Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 73 of 185
Found at i:22984534 original size:2 final size:2
Alignment explanation
Indices: 22984527--22984553 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22984517 TATCACTTTG
22984527 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
22984554 ATCTATCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:22992926 original size:21 final size:20
Alignment explanation
Indices: 22992902--22992949 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
22992892 AGAAGAGAAT
22992902 AGAAAATAAAGAGAAAAAAAA
1 AGAAAATAAAG-GAAAAAAAA
* * *
22992923 AGAAAGTTAAAGGAACATAAA
1 AGAAA-ATAAAGGAAAAAAAA
22992944 AGAAAA
1 AGAAAA
22992950 AAATTTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (20 bp):
AGAAAATAAAGGAAAAAAAA
Found at i:22998202 original size:8 final size:8
Alignment explanation
Indices: 22998189--22998213 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22998179 TATACTAAAC
22998189 AATAAAAT
1 AATAAAAT
22998197 AATAAAAT
1 AATAAAAT
22998205 AATAAAAT
1 AATAAAAT
22998213 A
1 A
22998214 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:22998840 original size:22 final size:22
Alignment explanation
Indices: 22998813--22998859 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22998803 TTTTAATGAC
* *
22998813 ATTTTTAATGCATTAAGTTTAA
1 ATTTTTAATGCAATAAGTATAA
*
22998835 ATTTTTCATGCAATAAGTATAA
1 ATTTTTAATGCAATAAGTATAA
22998857 ATT
1 ATT
22998860 CACGTGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (22 bp):
ATTTTTAATGCAATAAGTATAA
Found at i:23000925 original size:5 final size:5
Alignment explanation
Indices: 23000915--23000941 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
23000905 TACGAAGTGT
23000915 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
23000942 ACAGATTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:23001888 original size:16 final size:15
Alignment explanation
Indices: 23001854--23001898 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
23001844 AAATAATTTA
*
23001854 AAATTTAAA--AATC
1 AAATTTAAACTAATT
23001867 AAATTTAAACTACATT
1 AAATTTAAACTA-ATT
23001883 AAATTTAAACTAATT
1 AAATTTAAACTAATT
23001898 A
1 A
23001899 GAGAGTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 9 0.32
15 5 0.18
16 14 0.50
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATTTAAACTAATT
Found at i:23015266 original size:23 final size:23
Alignment explanation
Indices: 23015240--23015308 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
23015230 TGAAAGTAAT
23015240 TTAAAATAATAGGTGAACTGTCA
1 TTAAAATAATAGGTGAACTGTCA
* * *
23015263 TT--AA-ACTA--TGAA-AGTAA
1 TTAAAATAATAGGTGAACTGTCA
23015280 TTTAAAATAATAGGTGAACTGTCA
1 -TTAAAATAATAGGTGAACTGTCA
23015304 TTAAA
1 TTAAA
23015309 CTATTAGCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
17 3 0.09
18 6 0.18
20 5 0.15
21 5 0.15
23 11 0.33
24 3 0.09
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (23 bp):
TTAAAATAATAGGTGAACTGTCA
Found at i:23015286 original size:41 final size:41
Alignment explanation
Indices: 23015229--23015312 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
23015219 AAATCCTAAC
23015229 ATGAAAGTAATTTAAAATAATAGGTGAACTGTCATTAAACT
1 ATGAAAGTAATTTAAAATAATAGGTGAACTGTCATTAAACT
23015270 ATGAAAGTAATTTAAAATAATAGGTGAACTGTCATTAAACT
1 ATGAAAGTAATTTAAAATAATAGGTGAACTGTCATTAAACT
23015311 AT
1 AT
23015313 TAGCAAAGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGAAAGTAATTTAAAATAATAGGTGAACTGTCATTAAACT
Found at i:23019366 original size:23 final size:23
Alignment explanation
Indices: 23019328--23019378 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
23019318 CCAATGTCGT
* *
23019328 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
23019351 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
23019374 AGTAA
1 TGTAA
23019379 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:23020201 original size:75 final size:75
Alignment explanation
Indices: 23020109--23020262 Score: 272
Period size: 75 Copynumber: 2.1 Consensus size: 75
23020099 AGATTCAAGA
23020109 AATAGAAGCTGGAGGAGAAAGAAAACCAAGTTAAAGATTGAAATCAATAGGACAAGGTAAGAACA
1 AATAGAAGCTGGAGGAGAAAGAAAACCAAGTTAAAGATTGAAATCAATAGGACAAGGTAAGAACA
23020174 TCAAGATTGC
66 TCAAGATTGC
* * *
23020184 AATAGAAGCTGGTGGAGAGAGAAAATCAAGTTAAAGATTGAAATCAATAGGACAAGGTAAGAACA
1 AATAGAAGCTGGAGGAGAAAGAAAACCAAGTTAAAGATTGAAATCAATAGGACAAGGTAAGAACA
*
23020249 TCAAGATTTC
66 TCAAGATTGC
23020259 AATA
1 AATA
23020263 TATTTTTAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.49, C:0.10, G:0.23, T:0.18
Consensus pattern (75 bp):
AATAGAAGCTGGAGGAGAAAGAAAACCAAGTTAAAGATTGAAATCAATAGGACAAGGTAAGAACA
TCAAGATTGC
Found at i:23023191 original size:59 final size:61
Alignment explanation
Indices: 23023124--23023241 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 61
23023114 TGATTAAACT
* * *
23023124 TAATCACTTTAATAATAAATTAATATAATA-TTAA-TATTAGATTAAATTTAATATTAAGA
1 TAATCACTTTAATAATAAATTAATAAAATAGATAAGTATTAAATTAAATTTAATATTAAGA
* *
23023183 TAATCACTTTAATATTAAATTAATAAAATAGATAAGTATTAAATTTAATTTAATATTAA
1 TAATCACTTTAATAATAAATTAATAAAATAGATAAGTATTAAATTAAATTTAATATTAA
23023242 ACTATTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
59 28 0.54
60 3 0.06
61 21 0.40
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (61 bp):
TAATCACTTTAATAATAAATTAATAAAATAGATAAGTATTAAATTAAATTTAATATTAAGA
Found at i:23023549 original size:13 final size:13
Alignment explanation
Indices: 23023533--23023576 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
23023523 TTTTTCAAGA
23023533 AAATTCCTTAATC
1 AAATTCCTTAATC
* * *
23023546 AAATTCCTGAGTT
1 AAATTCCTTAATC
*
23023559 AAATTCTTTAATC
1 AAATTCCTTAATC
23023572 AAATT
1 AAATT
23023577 ATTTAGTTGA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.41
Consensus pattern (13 bp):
AAATTCCTTAATC
Found at i:23026196 original size:23 final size:23
Alignment explanation
Indices: 23026169--23026221 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
23026159 AATGTTATTG
23026169 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
23026192 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23026215 ATCAGTG
1 ATCAGTG
23026222 TGGCAGTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23027962 original size:5 final size:5
Alignment explanation
Indices: 23027952--23027979 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
23027942 TTACTTAGCC
23027952 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
23027980 CAAAAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:23030181 original size:15 final size:15
Alignment explanation
Indices: 23030161--23030190 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23030151 CTATGCATGC
*
23030161 AAAATATAAAAGACA
1 AAAATACAAAAGACA
23030176 AAAATACAAAAGACA
1 AAAATACAAAAGACA
23030191 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:23033029 original size:53 final size:53
Alignment explanation
Indices: 23032971--23033078 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
23032961 ATGTCATGTT
*
23032971 TACATGGACCGATTATTTAATTAATAGAAGAAGTACAAGATTATTTAACTACA
1 TACATGGACCGATTATTTAATTAATAGAAGAAGTACAAGAATATTTAACTACA
*
23033024 TACATGGACCGATTATTTAATTAGTAGAAGAAGTACAAGAATATTTAACTACA
1 TACATGGACCGATTATTTAATTAATAGAAGAAGTACAAGAATATTTAACTACA
23033077 TA
1 TA
23033079 AACAATATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (53 bp):
TACATGGACCGATTATTTAATTAATAGAAGAAGTACAAGAATATTTAACTACA
Found at i:23035287 original size:22 final size:23
Alignment explanation
Indices: 23035262--23035307 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
23035252 CCATTCAATG
* *
23035262 TTCAGTTTGGTACTT-GAGTTTT
1 TTCAATTTGATACTTCGAGTTTT
*
23035284 TTCAATTTGATATTTCGAGTTTT
1 TTCAATTTGATACTTCGAGTTTT
23035307 T
1 T
23035308 CTTTATCCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.17, C:0.09, G:0.17, T:0.57
Consensus pattern (23 bp):
TTCAATTTGATACTTCGAGTTTT
Found at i:23041070 original size:12 final size:11
Alignment explanation
Indices: 23041053--23041088 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
23041043 AACAAATCCT
23041053 CTCTCATATTTC
1 CTCTCA-ATTTC
*
23041065 CTCTCAATTTT
1 CTCTCAATTTC
23041076 CTCTCAATTTC
1 CTCTCAATTTC
23041087 CT
1 CT
23041089 TCCAAAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:23041099 original size:22 final size:23
Alignment explanation
Indices: 23041052--23041100 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
23041042 AAACAAATCC
**
23041052 TCTCTCATATTTCCTCTCAATTT
1 TCTCTCATATTTCCTCTCAAAAT
23041075 TCTCTCA-ATTTCCT-TCCAAAAT
1 TCTCTCATATTTCCTCT-CAAAAT
23041097 TCTC
1 TCTC
23041101 ATAAATCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.04
22 15 0.65
23 7 0.30
ACGTcount: A:0.20, C:0.33, G:0.00, T:0.47
Consensus pattern (23 bp):
TCTCTCATATTTCCTCTCAAAAT
Found at i:23041144 original size:51 final size:51
Alignment explanation
Indices: 23041068--23041188 Score: 163
Period size: 51 Copynumber: 2.4 Consensus size: 51
23041058 ATATTTCCTC
* * * *
23041068 TCAATTTTCTCTCAATTTCCTTCCAAAATTCTCAT-AAATCCATAATTAATA
1 TCAATTTACTCTCAATTTCATTCCAAAAATCTC-TCAAAGCCATAATTAATA
* *
23041119 TCAATTTACTCTCAATTTCATTCCAAAAATCTCTCAAAGCCATATTTAATT
1 TCAATTTACTCTCAATTTCATTCCAAAAATCTCTCAAAGCCATAATTAATA
*
23041170 TCAATTTGCTCTCAATTTC
1 TCAATTTACTCTCAATTTC
23041189 CTTTTTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 61 0.98
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (51 bp):
TCAATTTACTCTCAATTTCATTCCAAAAATCTCTCAAAGCCATAATTAATA
Found at i:23042318 original size:7 final size:7
Alignment explanation
Indices: 23042302--23042333 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
23042292 TGCAAATAGA
*
23042302 TATTTTG
1 TATTTAG
23042309 TATTTAG
1 TATTTAG
23042316 TATTTAG
1 TATTTAG
23042323 TATTTAG
1 TATTTAG
23042330 TATT
1 TATT
23042334 ATGCTGACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TATTTAG
Found at i:23043109 original size:832 final size:832
Alignment explanation
Indices: 23041506--23043168 Score: 3272
Period size: 832 Copynumber: 2.0 Consensus size: 832
23041496 TGACACGTGG
23041506 TGACGGTAGGCTGGGGATGCAAGTTGTACCCGAAACTAATTAGTGCATTGATCGAGAGGTGGAGA
1 TGACGGTAGGCTGGGGATGCAAGTTGTACCCGAAACTAATTAGTGCATTGATCGAGAGGTGGAGA
23041571 CCCGAGACGCACACATTCCATCTTCCATGTGGAGAGTGCACTATCACTCTAGAATATGTGAGTCT
66 CCCGAGACGCACACATTCCATCTTCCATGTGGAGAGTGCACTATCACTCTAGAATATGTGAGTCT
23041636 GCAATTGGGATTGCCGATCGACGGGAAGCCAGTCACCGGGACTGCTCAATCTAGCAATTGGGAGG
131 GCAATTGGGATTGCCGATCGACGGGAAGCCAGTCACCGGGACTGCTCAATCTAGCAATTGGGAGG
23041701 CAGTGTGCTACGAGCTTTTGGGCGCTATTCCGGATAAAATGGAGGGAGGTAAGATCGAGATGGGC
196 CAGTGTGCTACGAGCTTTTGGGCGCTATTCCGGATAAAATGGAGGGAGGTAAGATCGAGATGGGC
* *
23041766 TGGTTATGTGACACATTCCTTGATCCGGATGAAGATTCAACCGAAATTGAAAGAATCCGATATGC
261 TGGTTACGTGACACATTCCCTGATCCGGATGAAGATTCAACCGAAATTGAAAGAATCCGATATGC
23041831 TTGGGCATACATTCTTCAAATAATTGGAGGTTATCTGATGCCCGACACGTCACGGAGCCGCGTAC
326 TTGGGCATACATTCTTCAAATAATTGGAGGTTATCTGATGCCCGACACGTCACGGAGCCGCGTAC
23041896 ATTTAAGATGGCTCTTGAAAATCGTAGATTTTAGAGAAGCCGGTGAATTTAGTTGGGGGTCTGCC
391 ATTTAAGATGGCTCTTGAAAATCGTAGATTTTAGAGAAGCCGGTGAATTTAGTTGGGGGTCTGCC
23041961 GTCTTGGCAACGTTGTATCGGGAGATGTGCAGGGCGACGCGACCGAGGAGAGCGAAAATCGGAGG
456 GTCTTGGCAACGTTGTATCGGGAGATGTGCAGGGCGACGCGACCGAGGAGAGCGAAAATCGGAGG
* *
23042026 TTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCCTCGAGTGGACT
521 TTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCATCGAGTGGACC
23042091 ACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAATTATTATGTATA
586 ACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAATTATTATGTATA
23042156 TTTTTAAAAATAAAAGTATGCTAAAAATTTATTTAATTAGGTGGAACCATCCGGCAAGTCATGCT
651 TTTTTAAAAATAAAAGTATGCTAAAAATTTATTTAATTAGGTGGAACCATCCGGCAAGTCATGCT
23042221 CAATTACCTACTGAACTTGAAGATATATGGCTTCTATTGGACCAACGGTCGGAAGCACAAGTAAG
716 CAATTACCTACTGAACTTGAAGATATATGGCTTCTATTGGACCAACGGTCGGAAGCACAAGTAAG
23042286 TATTATTGCAAATAGATATTTTGTATTTAGTATTTAGTATTTAGTATTATGC
781 TATTATTGCAAATAGATATTTTGTATTTAGTATTTAGTATTTAGTATTATGC
23042338 TGACGGTAGGCTGGGGATGCAAGTTGTACCCGAAACTAATTAGTGCATTGATCGAGAGGTGGAGA
1 TGACGGTAGGCTGGGGATGCAAGTTGTACCCGAAACTAATTAGTGCATTGATCGAGAGGTGGAGA
23042403 CCCGAGACGCACACATTCCATCTTCCATGTGGAGAGTGCACTATCACTCTAGAATATGTGAGTCT
66 CCCGAGACGCACACATTCCATCTTCCATGTGGAGAGTGCACTATCACTCTAGAATATGTGAGTCT
23042468 GCAATTGGGATTGCCGATCGACGGGAAGCCAGTCACCGGGACTGCTCAATCTAGCAATTGGGAGG
131 GCAATTGGGATTGCCGATCGACGGGAAGCCAGTCACCGGGACTGCTCAATCTAGCAATTGGGAGG
*
23042533 CAGTGTGCTACGAGCTTTTGGGCGCTATTCCGGATAAAATGGATGGAGGTAAGATCGAGATGGGC
196 CAGTGTGCTACGAGCTTTTGGGCGCTATTCCGGATAAAATGGAGGGAGGTAAGATCGAGATGGGC
23042598 TGGTTACGTGACACATTCCCTGATCCGGATGAAGATTCAACCGAAATTGAAAGAATCCGATATGC
261 TGGTTACGTGACACATTCCCTGATCCGGATGAAGATTCAACCGAAATTGAAAGAATCCGATATGC
23042663 TTGGGCATACATTCTTCAAATAATTGGAGGTTATCTGATGCCCGACACGTCACGGAGCCGCGTAC
326 TTGGGCATACATTCTTCAAATAATTGGAGGTTATCTGATGCCCGACACGTCACGGAGCCGCGTAC
23042728 ATTTAAGATGGCTCTTGAAAATCGTAGATTTTAGAGAAGCCGGTGAATTTAGTTGGGGGTCTGCC
391 ATTTAAGATGGCTCTTGAAAATCGTAGATTTTAGAGAAGCCGGTGAATTTAGTTGGGGGTCTGCC
23042793 GTCTTGGCAACGTTGTATCGGGAGATGTGCAGGGCGACGCGACCGAGGAGAGCGAAAATCGGAGG
456 GTCTTGGCAACGTTGTATCGGGAGATGTGCAGGGCGACGCGACCGAGGAGAGCGAAAATCGGAGG
23042858 TTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCATCGAGTGGACC
521 TTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCATCGAGTGGACC
*
23042923 ACCCATATACATTCTCACTCATAACGAGGTAAATTTTATATTAGATTTTACAATTATTATGTATA
586 ACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAATTATTATGTATA
23042988 TTTTTAAAAATAAAAGTATGCTAAAAATTTATTTAATTAGGTGGAACCATCCGGCAAGTCATGCT
651 TTTTTAAAAATAAAAGTATGCTAAAAATTTATTTAATTAGGTGGAACCATCCGGCAAGTCATGCT
23043053 CAATTACCTACTGAACTTGAAGATATATGGCTTCTATTGGACCAACGGTCGGAAGCACAAGTAAG
716 CAATTACCTACTGAACTTGAAGATATATGGCTTCTATTGGACCAACGGTCGGAAGCACAAGTAAG
23043118 TATTATTGCAAATAGATATTTTGTATTTAGTATTTAGTATTTAGTATTATG
781 TATTATTGCAAATAGATATTTTGTATTTAGTATTTAGTATTTAGTATTATG
23043169 TATATAACTA
Statistics
Matches: 825, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
832 825 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (832 bp):
TGACGGTAGGCTGGGGATGCAAGTTGTACCCGAAACTAATTAGTGCATTGATCGAGAGGTGGAGA
CCCGAGACGCACACATTCCATCTTCCATGTGGAGAGTGCACTATCACTCTAGAATATGTGAGTCT
GCAATTGGGATTGCCGATCGACGGGAAGCCAGTCACCGGGACTGCTCAATCTAGCAATTGGGAGG
CAGTGTGCTACGAGCTTTTGGGCGCTATTCCGGATAAAATGGAGGGAGGTAAGATCGAGATGGGC
TGGTTACGTGACACATTCCCTGATCCGGATGAAGATTCAACCGAAATTGAAAGAATCCGATATGC
TTGGGCATACATTCTTCAAATAATTGGAGGTTATCTGATGCCCGACACGTCACGGAGCCGCGTAC
ATTTAAGATGGCTCTTGAAAATCGTAGATTTTAGAGAAGCCGGTGAATTTAGTTGGGGGTCTGCC
GTCTTGGCAACGTTGTATCGGGAGATGTGCAGGGCGACGCGACCGAGGAGAGCGAAAATCGGAGG
TTGCCTGTCACTACTGCAGTCATGGGCACGGTTTCGCTTTCCATTTCTACGTCATCGAGTGGACC
ACCCATATACATTCCCACTCATAACGAGGTAAATTTTATATTAGATTTTACAATTATTATGTATA
TTTTTAAAAATAAAAGTATGCTAAAAATTTATTTAATTAGGTGGAACCATCCGGCAAGTCATGCT
CAATTACCTACTGAACTTGAAGATATATGGCTTCTATTGGACCAACGGTCGGAAGCACAAGTAAG
TATTATTGCAAATAGATATTTTGTATTTAGTATTTAGTATTTAGTATTATGC
Found at i:23043150 original size:7 final size:7
Alignment explanation
Indices: 23043134--23043165 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
23043124 TGCAAATAGA
*
23043134 TATTTTG
1 TATTTAG
23043141 TATTTAG
1 TATTTAG
23043148 TATTTAG
1 TATTTAG
23043155 TATTTAG
1 TATTTAG
23043162 TATT
1 TATT
23043166 ATGTATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TATTTAG
Found at i:23043171 original size:14 final size:13
Alignment explanation
Indices: 23043137--23043171 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
23043127 AAATAGATAT
23043137 TTTGTATTTAGTA
1 TTTGTATTTAGTA
23043150 TTTAGTATTTAGTA
1 TTT-GTATTTAGTA
23043164 TTATGTAT
1 TT-TGTAT
23043172 ATAACTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.15
14 16 0.80
15 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (13 bp):
TTTGTATTTAGTA
Found at i:23043824 original size:18 final size:18
Alignment explanation
Indices: 23043797--23043836 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
23043787 CAGGTGCGTT
*
23043797 TCCTATCCCTTATATGTA
1 TCCTAACCCTTATATGTA
23043815 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
23043833 TCCT
1 TCCT
23043837 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:23044290 original size:25 final size:25
Alignment explanation
Indices: 23044261--23044308 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23044251 TTAATATTTT
*
23044261 GAAGTTTGTTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
23044286 GAAGTTT-TATTGATGTAAAAAAA
1 GAAGTTTAT-TTGATGTAATAAAA
23044309 ATTTAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (25 bp):
GAAGTTTATTTGATGTAATAAAATA
Found at i:23044365 original size:25 final size:25
Alignment explanation
Indices: 23044337--23044461 Score: 196
Period size: 25 Copynumber: 5.0 Consensus size: 25
23044327 TATTTTGATA
*
23044337 TTATTTGATGTAATAAAATATAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044362 TTATTTGATGTAATAAAATAGATGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044387 TTATATGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044412 TTATTTGATGTAATAAAATACAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
23044437 TTATCTGATGTCATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
23044462 CCCTATGAGT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 91 1.00
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:23044400 original size:50 final size:50
Alignment explanation
Indices: 23044337--23044600 Score: 211
Period size: 50 Copynumber: 5.4 Consensus size: 50
23044327 TATTTTGATA
* * *
23044337 TTATTTGATGTAATAAAATATAAGTTTATTTGATGTAATAAAATAGATGT
1 TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
*
23044387 TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATACAAGT
1 TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
* * *** * * ***
23044437 TTATCTGATGTCATAAAATAGAAGTCCCTATGA-GT--TGAAA-A-CCCT
1 TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
* * * ** *
23044482 TTA-A-AATATAAGATCATAGCGAA-TAATTATTTGATGTAATAAAATATAAGT
1 TTATATGATGTAATAAAATA--GAAGT--TTATTTGATGTAATAAAATAGAAGT
* * *
23044533 TTATTTGATGTAATAAAATAGATGTTTATATGATGTAATAAAATAGAAGT
1 TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
* *
23044583 TTATTTGATGTGATAAAA
1 TTATATGATGTAATAAAA
23044601 ATTGAAAACC
Statistics
Matches: 163, Mismatches: 39, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
43 8 0.05
44 1 0.01
45 7 0.04
46 5 0.03
47 6 0.04
49 6 0.04
50 114 0.70
51 6 0.04
52 1 0.01
53 9 0.06
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.38
Consensus pattern (50 bp):
TTATATGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGT
Found at i:23044536 original size:25 final size:25
Alignment explanation
Indices: 23044508--23044600 Score: 150
Period size: 25 Copynumber: 3.7 Consensus size: 25
23044498 TAGCGAATAA
*
23044508 TTATTTGATGTAATAAAATATAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044533 TTATTTGATGTAATAAAATAGATGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044558 TTATATGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
23044583 TTATTTGATGTGATAAAA
1 TTATTTGATGTAATAAAA
23044601 ATTGAAAACC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.42
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:23044632 original size:23 final size:23
Alignment explanation
Indices: 23044602--23045262 Score: 795
Period size: 23 Copynumber: 27.7 Consensus size: 23
23044592 GTGATAAAAA
23044602 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
23044625 TTGAAAACCGTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
*
23044648 TTAAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23044671 TTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
* * *
23044694 TTGAAAACCTTAACTTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
23044717 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23044740 TTGAAAACCCAAAACCCTAACCTAATTAAA
1 TTG-------AAAACCCTAACCTAATTAAG
*
23044770 TTGAAAACCCTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
*
23044793 TTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23044816 TTGAAAACCCTAACATAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
23044839 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
23044862 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23044885 TTGAAAACCCTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
* *
23044908 TTAAAAACCGTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23044931 TTGAAAACCCTAACCTAATTCTAAC
1 TTGAAAACCCTAACCTAA-T-TAAG
* **
23044956 CT-AATTAA-GTTGAAAACCCTAACCTAATTAAG
1 TTGAA--AACCCT---AA-CCT-A----ATTAAG
*
23044988 TTGAAAACCCCAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23045011 TTGAAAACCCTAACCTAATTAAC
1 TTGAAAACCCTAACCTAATTAAG
* *
23045034 TTAAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
23045057 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23045080 TTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
* * *
23045103 TTGAAAACCTTAACTTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
23045126 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23045149 TTGAAAACCCAAAACCCTAACCTAATTAAA
1 TTG-------AAAACCCTAACCTAATTAAG
*
23045179 TTGAAAACCCTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
*
23045202 TTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
23045225 TTGAAAACCTTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
23045248 TTGAAAACCCTAACC
1 TTGAAAACCCTAACC
23045263 CTAAACTTAA
Statistics
Matches: 557, Mismatches: 52, Indels: 58
0.84 0.08 0.09
Matches are distributed among these distances:
23 481 0.86
24 3 0.01
25 5 0.01
26 2 0.00
27 1 0.00
28 5 0.01
29 5 0.01
30 45 0.08
31 2 0.00
32 4 0.01
33 3 0.01
34 1 0.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (23 bp):
TTGAAAACCCTAACCTAATTAAG
Found at i:23044655 original size:46 final size:46
Alignment explanation
Indices: 23044602--23045262 Score: 878
Period size: 46 Copynumber: 14.3 Consensus size: 46
23044592 GTGATAAAAA
* *
23044602 TTGAAAACCCTAACCTAATTAAGTTGAAAACCGTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* *
23044648 TTAAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* * *
23044694 TTGAAAACCTTAACTTATTTAAGTTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* *
23044740 TTGAAAACCCAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
1 TTG-------AAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* *
23044793 TTGAAAACCCTAACCTATTTAAGTTGAAAACCCTAACATAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
23044839 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* * *
23044885 TTGAAAACCCTAACCTAATTAAATTAAAAACCGTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
23044931 TTGAAAACCCTAACC----TAA-TT-------CTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
*
23044965 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCCAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* * *
23045011 TTGAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
*
23045057 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* * *
23045103 TTGAAAACCTTAACTTATTTAAGTTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* *
23045149 TTGAAAACCCAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
1 TTG-------AAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
* *
23045202 TTGAAAACCCTAACCTATTTAAGTTGAAAACCTTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
23045248 TTGAAAACCCTAACC
1 TTGAAAACCCTAACC
23045263 CTAAACTTAA
Statistics
Matches: 545, Mismatches: 44, Indels: 52
0.85 0.07 0.08
Matches are distributed among these distances:
34 28 0.05
38 3 0.01
39 2 0.00
41 2 0.00
42 3 0.01
46 425 0.78
53 82 0.15
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (46 bp):
TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAG
Found at i:23044724 original size:69 final size:69
Alignment explanation
Indices: 23044602--23045262 Score: 878
Period size: 69 Copynumber: 9.6 Consensus size: 69
23044592 GTGATAAAAA
* * *
23044602 TTGAAAACCCTAACCTAATTAAGTTGAAAACCGTAACCTAATTAAATTAAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23044667 TAAG
66 TAAG
* * * *
23044671 TTGAAAACCCTAACCTATTTAAGTTGAAAACCTTAACTTATTTAAGTTGAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23044736 TAAG
66 TAAG
* *
23044740 TTGAAAACCCAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTA
1 TTG-------AAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTA
*
23044805 ACCTATTTAAG
59 ACCTAATTAAG
*
23044816 TTGAAAACCCTAACATAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23044881 TAAG
66 TAAG
* * *
23044885 TTGAAAACCCTAACCTAATTAAATTAAAAACCGTAACCTAATTAAGTTGAAAACCCTAACC----
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23044946 TAA-
66 TAAG
*
23044949 TT-------CTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCCAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23045007 TAAG
66 TAAG
* * *
23045011 TTGAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23045076 TAAG
66 TAAG
* * * *
23045080 TTGAAAACCCTAACCTATTTAAGTTGAAAACCTTAACTTATTTAAGTTGAAAACCCTAACCTAAT
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
23045145 TAAG
66 TAAG
* *
23045149 TTGAAAACCCAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTA
1 TTG-------AAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTA
*
23045214 ACCTATTTAAG
59 ACCTAATTAAG
*
23045225 TTGAAAACCTTAACCTAATTAAGTTGAAAACCCTAACC
1 TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACC
23045263 CTAAACTTAA
Statistics
Matches: 523, Mismatches: 43, Indels: 52
0.85 0.07 0.08
Matches are distributed among these distances:
57 48 0.09
61 3 0.01
62 2 0.00
64 2 0.00
65 3 0.01
69 341 0.65
76 124 0.24
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (69 bp):
TTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAAT
TAAG
Found at i:23044754 original size:30 final size:30
Alignment explanation
Indices: 23044720--23044779 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23044710 ATTTAAGTTG
*
23044720 AAAACCCTAACCTAATTAAGTTGAAAACCC
1 AAAACCCTAACCTAATTAAATTGAAAACCC
23044750 AAAACCCTAACCTAATTAAATTGAAAACCC
1 AAAACCCTAACCTAATTAAATTGAAAACCC
23044780 TAACCTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.05, T:0.20
Consensus pattern (30 bp):
AAAACCCTAACCTAATTAAATTGAAAACCC
Found at i:23044961 original size:34 final size:34
Alignment explanation
Indices: 23044918--23044984 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
23044908 TTAAAAACCG
23044918 TAACCTAATTAAGTTGAAAACCCTAACCTAATTC
1 TAACCTAATTAAGTTGAAAACCCTAACCTAATTC
23044952 TAACCTAATTAAGTTGAAAACCCTAACCTAATT
1 TAACCTAATTAAGTTGAAAACCCTAACCTAATT
23044985 AAGTTGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (34 bp):
TAACCTAATTAAGTTGAAAACCCTAACCTAATTC
Found at i:23045163 original size:30 final size:30
Alignment explanation
Indices: 23045129--23045188 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23045119 ATTTAAGTTG
*
23045129 AAAACCCTAACCTAATTAAGTTGAAAACCC
1 AAAACCCTAACCTAATTAAATTGAAAACCC
23045159 AAAACCCTAACCTAATTAAATTGAAAACCC
1 AAAACCCTAACCTAATTAAATTGAAAACCC
23045189 TAACCTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.05, T:0.20
Consensus pattern (30 bp):
AAAACCCTAACCTAATTAAATTGAAAACCC
Found at i:23050742 original size:125 final size:124
Alignment explanation
Indices: 23050512--23050751 Score: 367
Period size: 125 Copynumber: 1.9 Consensus size: 124
23050502 CCCAAACAGG
* * *
23050512 CTACTGTAGCAAAAGCGCGTCCCCAAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
23050577 CTAGAAGCGAATTTATACTATTTGCTCAGAAACGTAAAAAAAAAATTATTTCATCCATGAC
66 CTAGAAGCGAATTTATACTATTTGCTCAGAAACGT--AAAAAAAATTATTTCATCCATGAC
* *
23050638 CTACTGTAGCAAGAGCGCGTCCACGAGGGCGCGA-TTTCA-AAATTTCTTCTCAAATAGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAA-TTCTTCTCAAATAGCATCCT
* * *
23050701 GCTAGAAGCGATTTTATACTATTTGCTCAGAAAGGTCAAAAAAATTATTTC
65 GCTAGAAGCGAATTTATACTATTTGCTCAGAAACGTAAAAAAAATTATTTC
23050752 TTCCCAGACC
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
123 14 0.13
124 3 0.03
125 58 0.55
126 30 0.29
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGAATTTATACTATTTGCTCAGAAACGTAAAAAAAATTATTTCATCCATGAC
Found at i:23050790 original size:7 final size:7
Alignment explanation
Indices: 23050778--23050804 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
23050768 CCTTAAAAAG
23050778 CCTAAAC
1 CCTAAAC
23050785 CCTAAAC
1 CCTAAAC
23050792 CCTAAAC
1 CCTAAAC
23050799 CCTAAA
1 CCTAAA
23050805 AGCCAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
CCTAAAC
Found at i:23051729 original size:13 final size:13
Alignment explanation
Indices: 23051711--23051739 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
23051701 TTATTGAAAA
23051711 TCTGTTGAAGATT
1 TCTGTTGAAGATT
23051724 TCTGTTGAAGATT
1 TCTGTTGAAGATT
23051737 TCT
1 TCT
23051740 TCTTCTCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.48
Consensus pattern (13 bp):
TCTGTTGAAGATT
Found at i:23064900 original size:41 final size:42
Alignment explanation
Indices: 23064816--23064908 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 42
23064806 TTCTGTGGGA
* * *
23064816 AAACGCCGCTATAAAACATGATCTTTAGCGGTGCTTTTATTAC
1 AAACGCTGCTAAAAAACATGATCTTTAGCGAT-CTTTTATTAC
* * *
23064859 AAATGCTGCTAAAAAACATGATTTTTAGCGAT-TTTTTTTAC
1 AAACGCTGCTAAAAAACATGATCTTTAGCGATCTTTTATTAC
23064900 AAACGCTGC
1 AAACGCTGC
23064909 AAGAGAGTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 16 0.37
43 27 0.63
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (42 bp):
AAACGCTGCTAAAAAACATGATCTTTAGCGATCTTTTATTAC
Found at i:23072544 original size:23 final size:23
Alignment explanation
Indices: 23072514--23072557 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
23072504 AACAATTTGC
23072514 AAATATAGGACAATGAAGGCTTT
1 AAATATAGGACAATGAAGGCTTT
23072537 AAATATAGGACAATGAAGGCT
1 AAATATAGGACAATGAAGGCT
23072558 ATAAGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (23 bp):
AAATATAGGACAATGAAGGCTTT
Found at i:23078786 original size:19 final size:21
Alignment explanation
Indices: 23078748--23078801 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 21
23078738 GTTGAAAATG
23078748 ATATTTATTTAATATAAATTT
1 ATATTTATTTAATATAAATTT
*
23078769 ATATTTA-TT-ATTTAAATTT
1 ATATTTATTTAATATAAATTT
*
23078788 -T-TTTATATAATATA
1 ATATTTATTTAATATA
23078802 TAAAAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 4 0.14
18 2 0.07
19 13 0.46
20 2 0.07
21 7 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTTATTTAATATAAATTT
Found at i:23079335 original size:5 final size:6
Alignment explanation
Indices: 23079318--23079342 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23079308 TAAATAACTT
23079318 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
23079343 CTCTATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:23081250 original size:27 final size:24
Alignment explanation
Indices: 23081204--23081253 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
23081194 AGATGAAATT
*
23081204 TTTAATTAAAAAATTTATTTTTTA
1 TTTAATTAAAAAATTAATTTTTTA
*
23081228 TTTAATATATAAAAATTAAATTTTTA
1 TTTAAT-TA-AAAAATTAATTTTTTA
23081254 AATAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 6 0.27
25 2 0.09
26 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAATTAAAAAATTAATTTTTTA
Found at i:23083919 original size:24 final size:24
Alignment explanation
Indices: 23083886--23083949 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
23083876 AAACCTAATT
* * *
23083886 CTAATCAATGTTAAATATATTATG
1 CTAATAAATGCTAAATATATTATA
23083910 CTAATAAATGCTAAATATATTATA
1 CTAATAAATGCTAAATATATTATA
* *
23083934 CCAATAAATACTAAAT
1 CTAATAAATGCTAAAT
23083950 CTTCTAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (24 bp):
CTAATAAATGCTAAATATATTATA
Found at i:23092298 original size:16 final size:17
Alignment explanation
Indices: 23092277--23092314 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
23092267 CCATTCCTTT
23092277 CACACCCTCGTCA-CCC
1 CACACCCTCGTCACCCC
23092293 CACACCCTCGTCACCCC
1 CACACCCTCGTCACCCC
23092310 CACAC
1 CACAC
23092315 AACCCTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.21, C:0.63, G:0.05, T:0.11
Consensus pattern (17 bp):
CACACCCTCGTCACCCC
Found at i:23093004 original size:23 final size:23
Alignment explanation
Indices: 23092977--23093023 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
23092967 ATTAGGGGAG
*
23092977 AAAATTAACGAATTTTGAGGGTT
1 AAAATTAAAGAATTTTGAGGGTT
*
23093000 AAAATTAAAGAATTTTGGGGGTT
1 AAAATTAAAGAATTTTGAGGGTT
23093023 A
1 A
23093024 TCGGGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.34
Consensus pattern (23 bp):
AAAATTAAAGAATTTTGAGGGTT
Found at i:23095977 original size:6 final size:6
Alignment explanation
Indices: 23095954--23095996 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
23095944 GAATTATTTT
* * *
23095954 TTTTAT TTTTAG ACTTTAG TTTTAG TTTTCG TTTTAG TTTTAG
1 TTTTAG TTTTAG -TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
23095997 AATTTTATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.16, C:0.05, G:0.14, T:0.65
Consensus pattern (6 bp):
TTTTAG
Found at i:23101873 original size:37 final size:36
Alignment explanation
Indices: 23101822--23101912 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 36
23101812 ATTTCAAAAA
*
23101822 TAATATTATTTTAATAGT-TTAATATTAAATTTAA-AT
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
23101858 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
23101895 TAAAGTGATTATCTTAAT
1 T-AA-T-ATTATCTTAAT
23101913 CTTAAATTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
36 12 0.26
37 19 0.40
38 4 0.09
39 11 0.23
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:23113537 original size:14 final size:15
Alignment explanation
Indices: 23113518--23113546 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23113508 TTAGGGTCCG
23113518 TTTC-TTTTCTTTTT
1 TTTCTTTTTCTTTTT
23113532 TTTCTTTTTCTTTTT
1 TTTCTTTTTCTTTTT
23113547 AGTTTTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTCTTTTTCTTTTT
Found at i:23132593 original size:31 final size:32
Alignment explanation
Indices: 23132531--23132598 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
23132521 CTTTTTAGAT
* *
23132531 AAATTTGATCCTTGACCTTTTAAGAAAGAGTC
1 AAATTTGACCCTTGACCTTTCAAGAAAGAGTC
23132563 AAATTTGACCACTT-ACCTTTCAA-AAAGAGTC
1 AAATTTGACC-CTTGACCTTTCAAGAAAGAGTC
*
23132594 GAATT
1 AAATT
23132599 GTTGTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 12 0.38
32 17 0.53
33 3 0.09
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
AAATTTGACCCTTGACCTTTCAAGAAAGAGTC
Found at i:23132949 original size:32 final size:32
Alignment explanation
Indices: 23132911--23132999 Score: 89
Period size: 32 Copynumber: 2.9 Consensus size: 32
23132901 CCCATTTTTT
*
23132911 AAATAAATACCAAAAA-ATTATTTTTAAAATTA
1 AAATAAATACCAAAAACAGTA-TTTTAAAATTA
* **
23132943 AAATAAAAATTAAAAACAGTATTTTAAAATTA
1 AAATAAATACCAAAAACAGTATTTTAAAATTA
*
23132975 AAA-AAAT--TAAAAA-AGTATTTTAAAA
1 AAATAAATACCAAAAACAGTATTTTAAAA
23133000 ATATTTTAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 12 0.24
29 6 0.12
31 3 0.06
32 27 0.53
33 3 0.06
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (32 bp):
AAATAAATACCAAAAACAGTATTTTAAAATTA
Found at i:23132991 original size:28 final size:30
Alignment explanation
Indices: 23132922--23132999 Score: 106
Period size: 32 Copynumber: 2.6 Consensus size: 30
23132912 AATAAATACC
*
23132922 AAAAAATTATTTTTAAAATTAAAATAAAAATT
1 AAAAAAGTA-TTTTAAAATT-AAATAAAAATT
23132954 AAAAACAGTATTTTAAAATT-AA-AAAAATT
1 AAAAA-AGTATTTTAAAATTAAATAAAAATT
23132983 AAAAAAGTATTTTAAAA
1 AAAAAAGTATTTTAAAA
23133000 ATATTTTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
28 12 0.27
29 12 0.27
30 2 0.05
32 15 0.34
33 3 0.07
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAAAAGTATTTTAAAATTAAATAAAAATT
Found at i:23133015 original size:10 final size:11
Alignment explanation
Indices: 23132984--23133061 Score: 60
Period size: 11 Copynumber: 7.4 Consensus size: 11
23132974 AAAAAAATTA
23132984 AAAAAGTATTTT
1 AAAAA-TATTTT
23132996 AAAAATATTTT
1 AAAAATATTTT
23133007 AAAAA-ATTTT
1 AAAAATATTTT
23133017 --AAA-A--TT
1 AAAAATATTTT
* *
23133023 AAAAAAATTTAA
1 AAAAATATTT-T
23133035 AAAAAGTATTTT
1 AAAAA-TATTTT
*
23133047 AAAAGTATTTT
1 AAAAATATTTT
23133058 AAAA
1 AAAA
23133062 TTAAAAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
6 2 0.04
8 7 0.13
9 1 0.02
10 5 0.09
11 22 0.40
12 14 0.25
13 4 0.07
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:23133026 original size:16 final size:16
Alignment explanation
Indices: 23133005--23133036 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23132995 TAAAAATATT
*
23133005 TTAAAAAATTTTAAAA
1 TTAAAAAAATTTAAAA
23133021 TTAAAAAAATTTAAAA
1 TTAAAAAAATTTAAAA
23133037 AAAGTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTAAAAAAATTTAAAA
Found at i:23133050 original size:51 final size:49
Alignment explanation
Indices: 23132963--23133061 Score: 171
Period size: 51 Copynumber: 2.0 Consensus size: 49
23132953 TAAAAACAGT
23132963 ATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAAA
1 ATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAAA
*
23133012 ATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAGTATTTTAAAA
1 ATTTTAAAATTAAAAAAA-TT-AAAAAAGTATTTTAAAAATATTTTAAAA
23133062 TTAAAAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 18 0.38
50 2 0.04
51 27 0.57
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (49 bp):
ATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAAA
Found at i:23133057 original size:41 final size:40
Alignment explanation
Indices: 23132932--23133071 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
23132922 AAAAAATTAT
* *
23132932 TTTTAAAATTAAAATAAAAATTAAAAACAGTATTTTAAAAT-
1 TTTTAAAATT-AAA-AAAATTTAAAAAAAGTATTTTAAAATA
*** * ** *
23132973 TAAAAAAATTAAAAAAGTATTTTAAAAA-TATTTTAAAAAA
1 TTTTAAAATTAAAAAAAT-TTAAAAAAAGTATTTTAAAATA
23133013 TTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAGTA
1 TTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAA-TA
23133054 TTTTAAAATTAAAAAAAT
1 TTTTAAAATTAAAAAAAT
23133072 ATTTATTATT
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
39 20 0.25
40 33 0.42
41 26 0.33
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (40 bp):
TTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAATA
Found at i:23136251 original size:21 final size:21
Alignment explanation
Indices: 23136199--23136243 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
23136189 TTTAACCTTG
*
23136199 AACCCCAAACCATAAAACTCA
1 AACCTCAAACCATAAAACTCA
23136220 AACCTCAAACCATAAACACT-A
1 AACCTCAAACCATAAA-ACTCA
23136241 AAC
1 AAC
23136244 TTTAAACCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.53, C:0.36, G:0.00, T:0.11
Consensus pattern (21 bp):
AACCTCAAACCATAAAACTCA
Found at i:23136449 original size:19 final size:20
Alignment explanation
Indices: 23136419--23136468 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
23136409 TAGGATTTGA
* *
23136419 GGTTTAAGGTTTGGGTTTAT
1 GGTTTAAGGTTTGAGTTCAT
23136439 GGTTT-AGGTTTGAGTTCAT
1 GGTTTAAGGTTTGAGTTCAT
*
23136458 GGTTCAAGGTT
1 GGTTTAAGGTT
23136469 CGGGATTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (20 bp):
GGTTTAAGGTTTGAGTTCAT
Found at i:23136601 original size:13 final size:13
Alignment explanation
Indices: 23136583--23136610 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23136573 ATAAAATAAT
23136583 TTCTCCTAAACTA
1 TTCTCCTAAACTA
23136596 TTCTCCTAAACTA
1 TTCTCCTAAACTA
23136609 TT
1 TT
23136611 AAGGAGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (13 bp):
TTCTCCTAAACTA
Found at i:23138526 original size:3 final size:3
Alignment explanation
Indices: 23138518--23138587 Score: 52
Period size: 3 Copynumber: 23.3 Consensus size: 3
23138508 AAATTAGTCC
* * * ***
23138518 TTA TTA TTA TTA ATC TTA TTA TTA TTA TCA TTA GCG TTA TTA -TA CTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
23138566 TTC TTA TTA TTG TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
23138588 ATTTAGTACT
Statistics
Matches: 49, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
4 2 0.04
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:23155190 original size:26 final size:27
Alignment explanation
Indices: 23155137--23155200 Score: 112
Period size: 26 Copynumber: 2.4 Consensus size: 27
23155127 ATAAAAAATA
23155137 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTTTATTT
23155165 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
23155191 ACCAAAATAT
1 ACCAAAATAT
23155201 ACAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 21 0.58
28 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:23155284 original size:27 final size:27
Alignment explanation
Indices: 23155253--23155312 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
23155243 CCCTGATCAG
*
23155253 GCCAATCACATTGGCGGCACCAAAGGT
1 GCCAAACACATTGGCGGCACCAAAGGT
*** *
23155280 GCCAAAGTGATTGGCGGCACCAATGGT
1 GCCAAACACATTGGCGGCACCAAAGGT
*
23155307 ACCAAA
1 GCCAAA
23155313 GGACTAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (27 bp):
GCCAAACACATTGGCGGCACCAAAGGT
Found at i:23155313 original size:27 final size:27
Alignment explanation
Indices: 23155262--23155313 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23155252 GGCCAATCAC
*
23155262 ATTGGCGGCACCAAAGGTGCCAAAGTG
1 ATTGGCGGCACCAAAGGTACCAAAGTG
*
23155289 ATTGGCGGCACCAATGGTACCAAAG
1 ATTGGCGGCACCAAAGGTACCAAAG
23155314 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTACCAAAGTG
Found at i:23155448 original size:19 final size:19
Alignment explanation
Indices: 23155421--23155482 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
23155411 ACAGAATAGT
23155421 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * * *
23155440 TTGTTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
23155458 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
23155477 TTATTA
1 TTATTA
23155483 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 14 0.41
19 20 0.59
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:23155473 original size:18 final size:18
Alignment explanation
Indices: 23155415--23155474 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
23155405 TAGTTTACAG
23155415 AATAGTTTATTAAATTAA
1 AATAGTTTATTAAATTAA
* * * *
23155433 AATAGAGTTGTTAAATGAG
1 AATAG-TTTATTAAATTAA
23155452 AATAGTTTATTAAATTAA
1 AATAGTTTATTAAATTAA
23155470 AATAG
1 AATAG
23155475 AGTTATTACT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 19 0.58
19 14 0.42
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (18 bp):
AATAGTTTATTAAATTAA
Found at i:23156348 original size:26 final size:27
Alignment explanation
Indices: 23156295--23156358 Score: 112
Period size: 26 Copynumber: 2.4 Consensus size: 27
23156285 ATAAAAAATA
23156295 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTTTATTT
23156323 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
23156349 ACCAAAATAT
1 ACCAAAATAT
23156359 ACAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 21 0.58
28 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:23156442 original size:27 final size:27
Alignment explanation
Indices: 23156411--23156470 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
23156401 CCCTGATCAG
*
23156411 GCCAATCACATTGGCGGCACCAAAGGT
1 GCCAAACACATTGGCGGCACCAAAGGT
*** *
23156438 GCCAAAGTGATTGGCGGCACCAATGGT
1 GCCAAACACATTGGCGGCACCAAAGGT
*
23156465 ACCAAA
1 GCCAAA
23156471 GGACTAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (27 bp):
GCCAAACACATTGGCGGCACCAAAGGT
Found at i:23156471 original size:27 final size:27
Alignment explanation
Indices: 23156420--23156471 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23156410 GGCCAATCAC
*
23156420 ATTGGCGGCACCAAAGGTGCCAAAGTG
1 ATTGGCGGCACCAAAGGTACCAAAGTG
*
23156447 ATTGGCGGCACCAATGGTACCAAAG
1 ATTGGCGGCACCAAAGGTACCAAAG
23156472 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTACCAAAGTG
Found at i:23156606 original size:19 final size:19
Alignment explanation
Indices: 23156579--23156640 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
23156569 ACAGAATAGT
23156579 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * * *
23156598 TTGTTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
23156616 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
23156635 TTATTA
1 TTATTA
23156641 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 14 0.41
19 20 0.59
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:23156631 original size:18 final size:18
Alignment explanation
Indices: 23156573--23156632 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
23156563 TAGTTTACAG
23156573 AATAGTTTATTAAATTAA
1 AATAGTTTATTAAATTAA
* * * *
23156591 AATAGAGTTGTTAAATGAG
1 AATAG-TTTATTAAATTAA
23156610 AATAGTTTATTAAATTAA
1 AATAGTTTATTAAATTAA
23156628 AATAG
1 AATAG
23156633 AGTTATTACT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 19 0.58
19 14 0.42
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.38
Consensus pattern (18 bp):
AATAGTTTATTAAATTAA
Found at i:23157234 original size:27 final size:27
Alignment explanation
Indices: 23157193--23157244 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23157183 CATTTTAGTC
*
23157193 CTTTGGCACCATTGGTGCTGCCAATCT
1 CTTTGGCACCATTGGTGCCGCCAATCT
*
23157220 CTTTGGCACCTTTGGTGCCGCCAAT
1 CTTTGGCACCATTGGTGCCGCCAAT
23157245 GTGATTGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.13, C:0.31, G:0.23, T:0.33
Consensus pattern (27 bp):
CTTTGGCACCATTGGTGCCGCCAATCT
Found at i:23157252 original size:27 final size:27
Alignment explanation
Indices: 23157195--23157253 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
23157185 TTTTAGTCCT
* *
23157195 TTGGCACCATTGGTGCTGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
23157222 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
23157249 TTGGC
1 TTGGC
23157254 CTGATCAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.14, C:0.27, G:0.27, T:0.32
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:23157337 original size:27 final size:28
Alignment explanation
Indices: 23157307--23157371 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 28
23157297 TGTTTTTGGT
23157307 ATATTTTGGTAAATAAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
23157334 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
23157362 ATATTTTGGT
1 ATATTTTGGT
23157372 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:23160254 original size:3 final size:3
Alignment explanation
Indices: 23160246--23160289 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
23160236 ACCATAGCAA
23160246 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
23160290 CAACTTCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:23164321 original size:24 final size:24
Alignment explanation
Indices: 23164279--23164325 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
23164269 GTGATTCCCG
* *
23164279 TTAATTGCTCTTCGTAGCTACCCA
1 TTAATTGCACTTCGGAGCTACCCA
*
23164303 TTAATTGCACTTTGGAGCTACCC
1 TTAATTGCACTTCGGAGCTACCC
23164326 GTTATAGGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (24 bp):
TTAATTGCACTTCGGAGCTACCCA
Found at i:23166841 original size:8 final size:8
Alignment explanation
Indices: 23166828--23166857 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
23166818 GTTGATTTCC
23166828 AAACATTT
1 AAACATTT
23166836 AAACATTT
1 AAACATTT
23166844 AAACATTT
1 AAACATTT
23166852 AAACAT
1 AAACAT
23166858 GCATATTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (8 bp):
AAACATTT
Found at i:23167123 original size:22 final size:21
Alignment explanation
Indices: 23167097--23167220 Score: 96
Period size: 22 Copynumber: 5.9 Consensus size: 21
23167087 TTCACAAACA
23167097 AATTCCTTTCAAAAATTCTCTC
1 AATTCC-TTCAAAAATTCTCTC
*
23167119 AATTCCCTTCAAAATTTCTCTC
1 AATT-CCTTCAAAAATTCTCTC
* *
23167141 AATTTCCTTCCAGAATTCTCTC
1 AA-TTCCTTCAAAAATTCTCTC
* *
23167163 AA--ACTCTC--AAATTCTC-A
1 AATTCCT-TCAAAAATTCTCTC
* *
23167180 AATTCCTTCCAAAATCCTCTC
1 AATTCCTTCAAAAATTCTCTC
*
23167201 AATTTCCTTCAAAAAATCTC
1 AA-TTCCTTCAAAAATTCTC
23167221 CAAATCCATA
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
17 2 0.03
18 9 0.11
19 4 0.05
20 9 0.11
21 2 0.03
22 50 0.62
23 4 0.05
ACGTcount: A:0.31, C:0.31, G:0.01, T:0.37
Consensus pattern (21 bp):
AATTCCTTCAAAAATTCTCTC
Found at i:23167467 original size:24 final size:23
Alignment explanation
Indices: 23167412--23167467 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
23167402 TATATTTTAA
*
23167412 ATTTTTTTAAGATATTTTTATTT
1 ATTTTTTTAAGATATTTTTATAT
23167435 ATGTATTTTT-AGATATTTATTAATAT
1 AT-T-TTTTTAAGATATTT-TT-ATAT
23167461 ATTTTTT
1 ATTTTTT
23167468 GTTATAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 2 0.07
24 13 0.46
25 8 0.29
26 5 0.18
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (23 bp):
ATTTTTTTAAGATATTTTTATAT
Found at i:23169622 original size:23 final size:24
Alignment explanation
Indices: 23169596--23169660 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 24
23169586 ATTAAAATCT
23169596 CTAACCCT-ACTTAATTAAAAAAC
1 CTAACCCTAACTTAATTAAAAAAC
* *
23169619 CTAA-CCTAATTTAATTAAAAACC
1 CTAACCCTAACTTAATTAAAAAAC
* *
23169642 CAAACCCTAACCTAATTAA
1 CTAACCCTAACTTAATTAA
23169661 TTAAATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 3 0.09
23 20 0.57
24 12 0.34
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (24 bp):
CTAACCCTAACTTAATTAAAAAAC
Found at i:23169646 original size:28 final size:28
Alignment explanation
Indices: 23169616--23170588 Score: 959
Period size: 28 Copynumber: 32.3 Consensus size: 28
23169606 TTAATTAAAA
*
23169616 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
23169644 AACCCTAACCTAATTAATTAAATTAAAAACCCT
1 AA-CCTAACCTAA-T--TT-AATTAAAAACCCT
*
23169677 AACCTAACTTAATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAA--T--TT-AATTAAAAACCCT
*
23169710 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23169738 AACCCTAACCTATTTAAATAAATTAAAAACCCT
1 AA-CCTAACCTAATT---T-AATTAAAAACCCT
23169771 AACCTAACCTAATTTAACTAAATTAAAAACCCT
1 AACCTAACCTAA-TT---T-AATTAAAAACCCT
*
23169804 AACCCTAACTTAATTTAATTAAAAACCCT
1 AA-CCTAACCTAATTTAATTAAAAACCCT
23169833 AACCTAACCTAATTTAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAAAACCCT
** * ****
23169861 AACCTAATTTAATTAAAACCCCAAACCCT
1 AACCTAACCTAATT-TAATTAAAAACCCT
* *
23169890 AACCTAA-TTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23169917 AACCTAACTTAATTTAAATAATTAAAAACCCT
1 AACCTAACCTAA-TT---TAATTAAAAACCCT
23169949 AACCCTAACCTAATTTAATTAAAAA--C-
1 AA-CCTAACCTAATTTAATTAAAAACCCT
*
23169975 --CCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
23170001 AACCCTAACCTAATTAACTAAATTAAAAACCCT
1 AA-CCTAACCTAATT---T-AATTAAAAACCCT
23170034 AACCTAACCTAATTTAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170062 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170090 AACCCTAACCTATTTAATTAAATTAAAAACCCT
1 AA-CCTAACC----TAATTTAATTAAAAACCCT
23170123 AACCTAACCTAATTTAACTAAATTAAAAACCCT
1 AACCTAACCTAA-TT---T-AATTAAAAACCCT
23170156 AACCCTAACCTAATTTAATTAAAAACCCT
1 AA-CCTAACCTAATTTAATTAAAAACCCT
*
23170185 AACCTAACCTAATTTAATTAAAAACACT
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170213 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170241 AACCCTAACCTATTTAATTAAATTAAAAACCCT
1 AA-CCTAACC----TAATTTAATTAAAAACCCT
23170274 AACCTAACCTAATTTAACTAAATTAAAAACCCT
1 AACCTAACCTAA-TT---T-AATTAAAAACCCT
**
23170307 AACCCTAACCTAATTTAAAAAAAAACCCT
1 AA-CCTAACCTAATTTAATTAAAAACCCT
23170336 AACCTAACCTAATTTAACTAAATTAAAAAACCCT
1 AACCTAACCTAA-TT---T-AATT-AAAAACCCT
** *
23170370 AACCTAATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170398 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170426 AATCCTAACCTATTTAATTAAATTAAAAACCCT
1 AA-CCTAACC----TAATTTAATTAAAAACCCT
23170459 AACCTAACCTAAATTAACTAAATTAAAAACCCT
1 AACCTAACCT-AATT---T-AATTAAAAACCCT
23170492 AACCTAACCTAATTTAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170520 AACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAAAACCCT
*
23170548 AACCCTAACCTATTTAATTAAATTAAAAACCCT
1 AA-CCTAACC----TAATTTAATTAAAAACCCT
23170581 AACCTAAC
1 AACCTAAC
23170589 NNNNNNNNNN
Statistics
Matches: 821, Mismatches: 51, Indels: 142
0.81 0.05 0.14
Matches are distributed among these distances:
23 22 0.03
25 1 0.00
27 18 0.02
28 252 0.31
29 150 0.18
30 4 0.00
31 1 0.00
32 83 0.10
33 242 0.29
34 48 0.06
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (28 bp):
AACCTAACCTAATTTAATTAAAAACCCT
Found at i:23169668 original size:33 final size:32
Alignment explanation
Indices: 23169616--23170588 Score: 971
Period size: 33 Copynumber: 32.1 Consensus size: 32
23169606 TTAATTAAAA
* * *
23169616 AACCTAACCTAATTTAATTAAAAACCCAAACCCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAA-CCT
23169650 AACCTAATTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23169682 AACTTAATTTAATTAAATTAAAAACCCTAACCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAACCT
*
23169715 AACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
* *
23169744 AACCTATTTAAATAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23169776 AACCTAATTTAACTAAATTAAAAACCCTAA-C-
1 AACCTAA-TTAATTAAATTAAAAACCCTAACCT
*
23169807 --CCTAACTTAATTTAATTAAAAACCCTAACCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAACCT
23169838 AACCTAA-T--TT-AATTAAAAA--C---CCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
* *
23169861 AACCTAA-T--TT-AATTAAAACCCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
23169890 AACCTAATTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
* *
23169922 AACTTAATTTAAAT-AATTAAAAACCCTAACCCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAA-CCT
23169955 AACCTAA-T--TT-AATTAAAAA--C---CCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23169978 AACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
*
23170007 AACCTAATTAACTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
23170039 AACCTAA-T--TT-AATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170067 AACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
*
23170096 AACCTATTTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170128 AACCTAATTTAACTAAATTAAAAACCCTAACCCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAA-CCT
23170162 AACCTAA-T--TT-AATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170190 AACCTAA-T--TT-AATTAAAAACACTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170218 AACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
*
23170247 AACCTATTTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170279 AACCTAATTTAACTAAATTAAAAACCCTAACCCT
1 AACCTAA-TTAATTAAATTAAAAACCCTAA-CCT
*
23170313 AACCTAA-T--TTAAA-AAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170341 AACCTAATTTAACTAAATTAAAAAACCCTAACCT
1 AACCTAA-TTAATTAAATT-AAAAACCCTAACCT
23170375 AA--T--TTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170403 AACCTAA-T--TT-AATTAAAAACCCAAATCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
*
23170432 AACCTATTTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170464 AACCTAAATTAACTAAATTAAAAACCCTAACCT
1 AACCT-AATTAATTAAATTAAAAACCCTAACCT
23170497 AACCTAA-T--TT-AATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
*
23170525 AACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 AACCTAATTAATTAAATTAAAAACCCTAA-CCT
*
23170554 AACCTATTTAATTAAATTAAAAACCCTAACCT
1 AACCTAATTAATTAAATTAAAAACCCTAACCT
23170586 AAC
1 AAC
23170589 NNNNNNNNNN
Statistics
Matches: 820, Mismatches: 51, Indels: 138
0.81 0.05 0.14
Matches are distributed among these distances:
23 43 0.05
25 2 0.00
26 1 0.00
27 1 0.00
28 200 0.24
29 144 0.18
30 15 0.02
31 6 0.01
32 106 0.13
33 259 0.32
34 43 0.05
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (32 bp):
AACCTAATTAATTAAATTAAAAACCCTAACCT
Found at i:23169723 original size:61 final size:61
Alignment explanation
Indices: 23169616--23170588 Score: 1011
Period size: 61 Copynumber: 16.1 Consensus size: 61
23169606 TTAATTAAAA
*
23169616 AACCTAACCTAATTTAATTAAA--AACCCAAACCCTAACCTAA-TTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAA---AAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* * *
23169677 AACCTAACTTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
*
23169738 AACCCTAACCT-ATTTAAATAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAAAAACC
1 AA-CCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAA--T---TAAATTAAAAACC
23169802 CT
60 CT
* * *
23169804 AA-C---CCTAACTTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAA--C-
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
**** *
23169858 --CCTAACCTAATTTAATTAAAACCCCAAACCCTAACCTAA-TTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATT-AAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* * *
23169917 AACCTAACTTAATTTAAAT-AATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAA-CCTAACCTAATTAAATTAAAAACCCT
** *** * *
23169978 AACCTAATTTAA-TTAA--AAA-CCCAAACCCTAACCTAA-TTAACTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* *
23170034 AACCTAACCTAA--T--TT-AATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCA
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
23170090 AACCCTAACCT-ATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAAAAACC
1 AA-CCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAA--T---TAAATTAAAAACC
23170154 CT
60 CT
* *
23170156 AACCCTAACCTAA--T--TT-AATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACACT
1 AA-CCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
**
23170213 AACCTAACCTAATTTAATTAAA--AACCCAAACCCTAACCT-ATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAA---AAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* *
23170274 AACCTAACCTAATTTAACTAAATTAAAAACCCTAACCCTAACCTAATTTAAA-AAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAA-CCTAACCTAA-TTAAATTAAAAACCCT
* **
23170336 AACCTAACCTAATTTAACTAAATTAAAAAACCCTAACCTAATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATT-AAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* **
23170398 AACCTAACCTAATTTAATTAAA--AACCCAAATCCTAACCT-ATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAA---AAACCCTAACCTAACCTAATTAAATTAAAAACCCT
* * *
23170459 AACCTAACCTAAATTAACTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
**
23170520 AACCTAACCTAATTTAATTAAA--AACCCAAACCCTAACCT-ATTTAATTAAATTAAAAACCCT
1 AACCTAACCTAATTTAATTAAATTAA---AAACCCTAACCTAACCTAATTAAATTAAAAACCCT
23170581 AACCTAAC
1 AACCTAAC
23170589 NNNNNNNNNN
Statistics
Matches: 777, Mismatches: 72, Indels: 126
0.80 0.07 0.13
Matches are distributed among these distances:
53 1 0.00
54 2 0.00
55 16 0.02
56 81 0.10
57 54 0.07
58 12 0.02
59 19 0.02
60 49 0.06
61 302 0.39
62 173 0.22
63 26 0.03
64 1 0.00
65 1 0.00
66 39 0.05
67 1 0.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (61 bp):
AACCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAAAACCCT
Found at i:23169834 original size:23 final size:23
Alignment explanation
Indices: 23169804--23169878 Score: 96
Period size: 23 Copynumber: 3.0 Consensus size: 23
23169794 TAAAAACCCT
23169804 AACCCTAACTTAATTTAATTAAA
1 AACCCTAACTTAATTTAATTAAA
23169827 AACCCTAACCTAACCTAATTTAATTAAA
1 AACCCTAA-CT----TAATTTAATTAAA
*
23169855 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACTTAATTTAATTAAA
23169878 A
1 A
23169879 CCCCAAACCC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
23 22 0.48
24 2 0.04
27 1 0.02
28 21 0.46
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (23 bp):
AACCCTAACTTAATTTAATTAAA
Found at i:23169887 original size:23 final size:23
Alignment explanation
Indices: 23169804--23169887 Score: 87
Period size: 23 Copynumber: 3.4 Consensus size: 23
23169794 TAAAAACCCT
* *
23169804 AACCCTAACTTAATTTAATTAAA
1 AACCCAAACCTAATTTAATTAAA
23169827 AACCCTAACCTAACCTAATTTAATTAAA
1 AACCC--A---AACCTAATTTAATTAAA
*
23169855 AACCCTAACCTAATTTAATTAAA
1 AACCCAAACCTAATTTAATTAAA
*
23169878 ACCCCAAACC
1 AACCCAAACC
23169888 CTAACCTAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
23 30 0.59
28 21 0.41
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.27
Consensus pattern (23 bp):
AACCCAAACCTAATTTAATTAAA
Found at i:23170093 original size:23 final size:23
Alignment explanation
Indices: 23169949--23170004 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
23169939 TAAAAACCCT
23169949 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
23169972 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
23169995 AACCCAAACC
1 AACCCTAACC
23170005 CTAACCTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:23170721 original size:28 final size:28
Alignment explanation
Indices: 23170686--23170845 Score: 168
Period size: 28 Copynumber: 5.5 Consensus size: 28
23170676 NNTAAATTAA
23170686 AATTAAAAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCTAACCTAATTT
23170714 AATTAAAAACCCTAACCTAACCTAATTT
1 AATTAAAAACCCTAACCTAACCTAATTT
* * *
23170742 AATTAAAAACTCAAACCCTAACCTATTTAATTA
1 AATTAAAAACCCTAA-CCTAACC----TAATTT
23170775 AATTAAAAACCCTAACCTAACCTAATTTAACT
1 AATTAAAAACCCTAACCTAACCTAA-TT---T
23170807 AAATTAAAAACCCTAA-C---CCT-ATTT
1 -AATTAAAAACCCTAACCTAACCTAATTT
23170831 AATTAAAAACCCTAA
1 AATTAAAAACCCTAA
23170846 TTAAATTGTA
Statistics
Matches: 116, Mismatches: 6, Indels: 25
0.79 0.04 0.17
Matches are distributed among these distances:
23 15 0.13
24 1 0.01
27 2 0.02
28 45 0.39
29 12 0.10
32 8 0.07
33 33 0.28
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (28 bp):
AATTAAAAACCCTAACCTAACCTAATTT
Found at i:23170736 original size:33 final size:33
Alignment explanation
Indices: 23170696--23170824 Score: 135
Period size: 33 Copynumber: 4.1 Consensus size: 33
23170686 AATTAAAAAC
*
23170696 CCTAACCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAACCTAACCTAATTAAATTAAAAACCCTAA
* *
23170729 CCTAACCTAA--T--TT-AATTAAAAACTCAAA
1 CCTAACCTAACCTAATTAAATTAAAAACCCTAA
**
23170757 CCCTAACCT-ATTTAATTAAATTAAAAACCCTAA
1 -CCTAACCTAACCTAATTAAATTAAAAACCCTAA
** *
23170790 CCTAACCTAATTTAACTAAATTAAAAACCCTAA
1 CCTAACCTAACCTAATTAAATTAAAAACCCTAA
23170823 CC
1 CC
23170825 CTATTTAATT
Statistics
Matches: 84, Mismatches: 5, Indels: 14
0.82 0.05 0.14
Matches are distributed among these distances:
28 14 0.17
29 10 0.12
30 1 0.01
31 1 0.01
32 10 0.12
33 48 0.57
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.28
Consensus pattern (33 bp):
CCTAACCTAACCTAATTAAATTAAAAACCCTAA
Found at i:23170800 original size:61 final size:59
Alignment explanation
Indices: 23170689--23170837 Score: 201
Period size: 61 Copynumber: 2.4 Consensus size: 59
23170679 AAATTAAAAT
** * *
23170689 TAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAA
1 TAAAAACCCTAACCT-ATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAA
23170749 -AACTCAAACCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAA
1 TAA---AAACCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAA
23170810 TTAAAAACCCTAACCCTATTTAATTAAA
1 -TAAAAACCCTAA-CCTATTTAATTAAA
23170838 AACCCTAATT
Statistics
Matches: 79, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
59 2 0.03
60 9 0.11
61 54 0.68
62 12 0.15
63 2 0.03
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (59 bp):
TAAAAACCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAA
Found at i:23174202 original size:124 final size:123
Alignment explanation
Indices: 23173975--23174297 Score: 520
Period size: 124 Copynumber: 2.6 Consensus size: 123
23173965 CAAACTTGCT
*
23173975 ACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
* *
23174040 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACC
66 GAAGCGATTTTATACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCTCACATGACC
*
23174098 AACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGT
1 -ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGT
**
23174163 ATCAGCGATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAATTATTTCTCACATGACC
65 AGAAGCGATTTTATACTATTTCCTCAG-AAACGTCAAAAAAAATTATTTCTCACATGACC
* * * * *
23174223 ACTGTAGCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
*
23174288 GATGCGATTT
66 GAAGCGATTT
23174298 CCCACTATTT
Statistics
Matches: 183, Mismatches: 15, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
124 152 0.83
125 31 0.17
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (123 bp):
ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
GAAGCGATTTTATACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCTCACATGACC
Found at i:23176221 original size:13 final size:13
Alignment explanation
Indices: 23176197--23176235 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
23176187 TATTAGAATG
23176197 ATAAAT-AAATAA
1 ATAAATAAAATAA
23176209 ATAAATAAAATAA
1 ATAAATAAAATAA
23176222 A-AAGATAAAATAA
1 ATAA-ATAAAATAA
23176235 A
1 A
23176236 AATGCTATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (13 bp):
ATAAATAAAATAA
Found at i:23178170 original size:94 final size:94
Alignment explanation
Indices: 23178046--23178797 Score: 941
Period size: 94 Copynumber: 8.0 Consensus size: 94
23178036 AGTTTCATGT
* * * * * * * * *
23178046 TGCTCCATTGCAACTTTAAGAAGATAAGATTTGTTATTGTAGTTTCAATCCAACCCACCGCAACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
*
23178111 TCAGGGGTATAGGGTTTGTAGCTTCAATC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
* * * *
23178140 TGTTCCACTGCAACTTTAGGGAGATAAGATTCGCTATAGTAGATTCAATCTGACCCACTGAAACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
* *
23178205 TCAGAGGTATAGGATTTGTAGTTTCAATC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
* * * * * * *
23178234 CGCTCCACTACAATTTTAGGGAGATAAGATTCACCATGGTAGATTTAATTCGACCCACTGCAACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
23178299 TCAGGGGTATAGGATTTGTAGCTTCAATC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
** * * * * * *
23178328 TGCTCTGCTGCAACTTTAGGGAGATAATATTCGTTATAGTAGAATCAATCCAACCCATTGCAACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
*
23178393 TCAGGGGTATAAGATTTGTAGCTTCAATC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
* * * * *
23178422 TGTTTCACTGCAA-TTTCAAGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACAGCAAT
1 TGCTCCACTGCAACTTT-AGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAAC
23178486 TTCAGGGGTATAGGATTTGTAGCTTCAATC
65 TTCAGGGGTATAGGATTTGTAGCTTCAATC
* * *
23178516 TACTCCACTGTAACTTTAGGGAGATAAGATTC-CTTATGGTAGATTCAATCCGACCCACTGTAAC
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGC-TATGGTAGATTCAATCCGACCCACTGCAAC
*
23178580 TTCAGGGGTATAAGATTTGTAGCTTCAATC
65 TTCAGGGGTATAGGATTTGTAGCTTCAATC
* * * * ** *
23178610 TACTCCATTGCAACTTTAGGGTGACAAGATTCGCTATGGTAGATTCAATTTGACCCACTGCGACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
*
23178675 TCAGGGGTATAGGATTTGTAGCTTCAACC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
** * * * * * *
23178704 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCCTTGTAGTTTTATTCTGACCCAATGCAACT
1 TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
* *
23178769 TCAGGGGTATAGGAATTGTAGCTTTAATC
66 TCAGGGGTATAGGATTTGTAGCTTCAATC
23178798 CGAAGATTTG
Statistics
Matches: 561, Mismatches: 93, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
93 4 0.01
94 553 0.99
95 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (94 bp):
TGCTCCACTGCAACTTTAGGGAGATAAGATTCGCTATGGTAGATTCAATCCGACCCACTGCAACT
TCAGGGGTATAGGATTTGTAGCTTCAATC
Found at i:23181095 original size:25 final size:26
Alignment explanation
Indices: 23181067--23181136 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
23181057 GCATGTAAAT
23181067 GGGAAGCTCTAT-CGAGCCATATAAC
1 GGGAAGCTCTATGCGAGCCATATAAC
* * ** *
23181092 GGGAAACTC-ATGTGAGCTGTATAGC
1 GGGAAGCTCTATGCGAGCCATATAAC
23181117 GGGAAGCTCT-TGCGAGCCAT
1 GGGAAGCTCTATGCGAGCCAT
23181137 TTATTGGAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
24 2 0.06
25 32 0.94
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (26 bp):
GGGAAGCTCTATGCGAGCCATATAAC
Found at i:23181173 original size:25 final size:25
Alignment explanation
Indices: 23181145--23181214 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
23181135 ATTTATTGGA
*
23181145 AAGCTCAAGAGAGCCAAATATCAGG
1 AAGCTCAAGAGAGCTAAATATCAGG
*** *
23181170 AAGCTTGTGAGAGCTAAATATCGGG
1 AAGCTCAAGAGAGCTAAATATCAGG
*
23181195 ATGCTCATA-AGAGCTAAATA
1 AAGCTCA-AGAGAGCTAAATA
23181215 ATGGGAAACT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (25 bp):
AAGCTCAAGAGAGCTAAATATCAGG
Found at i:23181220 original size:25 final size:25
Alignment explanation
Indices: 23181179--23181232 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
23181169 GAAGCTTGTG
**
23181179 AGAGCTAAATATCGGGATGCTCATA
1 AGAGCTAAATATCGGGAAACTCATA
23181204 AGAGCTAAATAAT-GGGAAACTCATA
1 AGAGCTAAAT-ATCGGGAAACTCATA
23181229 AGAG
1 AGAG
23181233 TTGTGGTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (25 bp):
AGAGCTAAATATCGGGAAACTCATA
Found at i:23192975 original size:21 final size:21
Alignment explanation
Indices: 23192950--23192992 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23192940 TTTTCTAAAG
*
23192950 ATGTGTATTGGACTAAATTGA
1 ATGTGAATTGGACTAAATTGA
* *
23192971 ATGTGAATTGTATTAAATTGA
1 ATGTGAATTGGACTAAATTGA
23192992 A
1 A
23192993 CTAAATTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (21 bp):
ATGTGAATTGGACTAAATTGA
Found at i:23196211 original size:25 final size:25
Alignment explanation
Indices: 23196178--23196316 Score: 99
Period size: 25 Copynumber: 5.5 Consensus size: 25
23196168 TGAGCATCCC
*
23196178 ATTATATGGCTCTCACGAGCTTCTAG
1 ATTA-ATGGCTCTCACGAGCTTCTCG
***
23196204 ATTAATGGCTCTCTTAAGCTTCTCG
1 ATTAATGGCTCTCACGAGCTTCTCG
* *
23196229 -TTTATGGCTCGT-ATGAGCTTC-CTG
1 ATTAATGGCTC-TCACGAGCTTCTC-G
** *
23196253 A-TAATTTGGCTCTCTGGAGCTTTTCG
1 ATTAA--TGGCTCTCACGAGCTTCTCG
*
23196279 A-TAATTGGCTCTCACGAACTTCTCG
1 ATTAA-TGGCTCTCACGAGCTTCTCG
23196304 ATTAATGGCTCTC
1 ATTAATGGCTCTC
23196317 CGAAACTTCC
Statistics
Matches: 90, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
23 1 0.01
24 19 0.21
25 45 0.50
26 24 0.27
27 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
ATTAATGGCTCTCACGAGCTTCTCG
Found at i:23196420 original size:25 final size:25
Alignment explanation
Indices: 23196364--23196425 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
23196354 TTACGACTCT
*
23196364 TATGAGCTTCCCGTTATATAGCACG
1 TATGAGCTTCCCGTTACATAGCACG
* * *
23196389 AAAGAGCTTCCCGTTTACAT-GCTCG
1 TATGAGCTTCCCG-TTACATAGCACG
23196414 TATGAGCATTCC
1 TATGAGC-TTCC
23196426 TGAATATGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 20 0.69
26 9 0.31
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (25 bp):
TATGAGCTTCCCGTTACATAGCACG
Found at i:23201404 original size:13 final size:13
Alignment explanation
Indices: 23201372--23201405 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
23201362 TCCTAATACT
23201372 AATATTA-TATTA
1 AATATTATTATTA
23201384 AA-ATTATTATTA
1 AATATTATTATTA
23201396 AATATTATTA
1 AATATTATTA
23201406 AGAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 9 0.45
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATATTATTATTA
Found at i:23201416 original size:22 final size:22
Alignment explanation
Indices: 23201379--23201443 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
23201369 ACTAATATTA
23201379 TATTAAAATTATTATTAAATA-T
1 TATTAAAATTA-TATTAAATAGT
*
23201401 TATTAAGAATTATATTAAGAAAGT
1 TATTAA-AATTATATTAA-ATAGT
*
23201425 TATT-AAATTATATTTAATA
1 TATTAAAATTATATTAAATA
23201444 ATAATTATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 2 0.05
22 22 0.59
23 8 0.22
24 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (22 bp):
TATTAAAATTATATTAAATAGT
Found at i:23201421 original size:12 final size:12
Alignment explanation
Indices: 23201375--23201418 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
23201365 TAATACTAAT
23201375 ATTA-TATTAAA
1 ATTATTATTAAA
23201386 ATTATTATT-AA
1 ATTATTATTAAA
23201397 A-TATTATTAAGA
1 ATTATTATTAA-A
23201409 ATTA-TATTAA
1 ATTATTATTAA
23201419 GAAAGTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.24
11 8 0.28
12 12 0.41
13 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (12 bp):
ATTATTATTAAA
Found at i:23210617 original size:16 final size:16
Alignment explanation
Indices: 23210598--23210630 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23210588 AAAAATTTTC
23210598 AGTCCAACCCATTTAA
1 AGTCCAACCCATTTAA
*
23210614 AGTCTAACCCATTTAA
1 AGTCCAACCCATTTAA
23210630 A
1 A
23210631 ATTCTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (16 bp):
AGTCCAACCCATTTAA
Found at i:23215820 original size:18 final size:17
Alignment explanation
Indices: 23215788--23215821 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23215778 CAACCGCGAT
*
23215788 AAACGCAATGCGACCGA
1 AAACGCAACGCGACCGA
23215805 AAACGCGAACGCGACCG
1 AAACGC-AACGCGACCG
23215822 CGACCGCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.32, G:0.26, T:0.03
Consensus pattern (17 bp):
AAACGCAACGCGACCGA
Found at i:23238091 original size:106 final size:106
Alignment explanation
Indices: 23237906--23238106 Score: 384
Period size: 106 Copynumber: 1.9 Consensus size: 106
23237896 AAGCTTTAAG
*
23237906 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAATCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
23237971 TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
66 TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
*
23238012 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
23238077 TTTTCCAAACGCGAAATATTGCCTTATTTA
66 TTTTCCAAACGCGAAATATTGCCTTATTTA
23238107 GAAAAATTTT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 93 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (106 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
TTTTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
Found at i:23238627 original size:38 final size:38
Alignment explanation
Indices: 23238568--23238673 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
23238558 TATTTTTAAG
*
23238568 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
23238605 AATATGTATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
23238643 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
23238674 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:23239016 original size:22 final size:23
Alignment explanation
Indices: 23238960--23239016 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
23238950 AGTTTAAAAT
23238960 AAAATATATAAAAGAAAGTCTTA
1 AAAATATATAAAAGAAAGTCTTA
*
23238983 AATAATA-A-AAAAGACAGT-TTA
1 AA-AATATATAAAAGAAAGTCTTA
23239004 AAAATATATAAAA
1 AAAATATATAAAA
23239017 ATAGTGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 13 0.43
23 3 0.10
24 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAATATATAAAAGAAAGTCTTA
Found at i:23240408 original size:132 final size:132
Alignment explanation
Indices: 23240239--23240975 Score: 1018
Period size: 132 Copynumber: 5.6 Consensus size: 132
23240229 CTGTTTTTCA
* *
23240239 ATCCACTTCCTACCAATATAGGAAGGCAGGATATGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* *
23240304 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
23240369 GG
131 CG
* * *
23240371 ATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
23240436 GAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
23240501 CG
131 CG
* *
23240503 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
23240568 GAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
23240633 CG
131 CG
* * * * * * * * **
23240635 ATCCACTTCATGCCAATACATG-AGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATG
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC-ACGCCAATACA
* * *** *** * *
23240699 GGAAGACAAGATCTGC-ATCTTCGAT-TCACTTC-ATGCCAATACATG-AGACAAGATTTGCTTT
65 TGAAGACAAGATCTGCTTTCTTCGATCT-ACTTCGCCACCAATATGGGAAGACAAGATCTGC-AT
23240760 CTTCG
128 CTTCG
* * * * *
23240765 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACGCCAATACA
1 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACA
*
23240829 TGAAGACAAGATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
65 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
23240894 TCG
130 TCG
* * * *
23240897 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCCTCGATCTACTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
23240962 GAAGACAAGATCTG
66 GAAGACAAGATCTG
23240976 TTTTAATGAC
Statistics
Matches: 526, Mismatches: 69, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
129 12 0.02
130 43 0.08
131 94 0.18
132 365 0.69
133 12 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CG
Found at i:23240687 original size:87 final size:88
Alignment explanation
Indices: 23240226--23240949 Score: 838
Period size: 88 Copynumber: 8.3 Consensus size: 88
23240216 AGGGAGATAG
* * * * * * * *
23240226 GATCTG-TTT-TTCAATCCACTTC-CTACCAATATAGGAAGGCAGGATATGCTATCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
23240288 CTTCACGCCAATACATGAAGACAA
65 CTTCACGCCAATACATGAAGACAA
* * *
23240312 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
** * * * *
23240377 TTC-CTATCAATATAGGAAGATAG
66 TTCAC-GCCAATACATGAAGACAA
* * * * *** * * *
23240400 GACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
* * ***
23240464 CTTCGCCACCAATATGGGAAGACAA
65 CTTC-ACGCCAATACATGAAGACAA
* * * * * * * *
23240489 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
23240552 CTTCACGCCAATACATGAAGACAA
65 CTTCACGCCAATACATGAAGACAA
*
23240576 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
23240641 TTCATGCCAATACATG-AGACAA
66 TTCACGCCAATACATGAAGACAA
*
23240663 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATTCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
23240728 TTCATGCCAATACATG-AGACAA
66 TTCACGCCAATACATGAAGACAA
*
23240750 GATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
23240815 TTCACGCCAATACATGAAGACAA
66 TTCACGCCAATACATGAAGACAA
*
23240838 GATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * * *
23240903 TTC-CTACCAATATAGGAAGATAG
66 TTCAC-GCCAATACATGAAGACAA
* * *
23240926 GACCTGCTATCCTCGATCTACTTC
1 GATCTGCTTTCTTCGATCTACTTC
23240950 ATGCCAATAC
Statistics
Matches: 554, Mismatches: 73, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
86 6 0.01
87 217 0.39
88 266 0.48
89 64 0.12
90 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (88 bp):
GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCACGCCAATACATGAAGACAA
Found at i:23252535 original size:38 final size:38
Alignment explanation
Indices: 23252484--23252580 Score: 103
Period size: 38 Copynumber: 2.6 Consensus size: 38
23252474 TTCTNTAAAG
* *
23252484 AATATATATAAGTATGTATATG-ATGTA-AAATATGTATA
1 AATATATATAAGTATGTATAAGAAT-TAGAAATATG-AAA
*
23252522 AATATATGTAAGTA--TATAAGAATTATGAAATATGAAA
1 AATATATATAAGTATGTATAAGAATTA-GAAATATGAAA
*
23252559 AATATATTTAAGTATGTATAAG
1 AATATATATAAGTATGTATAAG
23252581 TACGTATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
36 7 0.14
37 17 0.34
38 20 0.40
39 6 0.12
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.37
Consensus pattern (38 bp):
AATATATATAAGTATGTATAAGAATTAGAAATATGAAA
Found at i:23252923 original size:22 final size:23
Alignment explanation
Indices: 23252867--23252923 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
23252857 AGTTTAAAAT
23252867 AAAATATATAAAAGAAAGTCTTA
1 AAAATATATAAAAGAAAGTCTTA
*
23252890 AATAATA-A-AAAAGACAGT-TTA
1 AA-AATATATAAAAGAAAGTCTTA
23252911 AAAATATATAAAA
1 AAAATATATAAAA
23252924 ATAGTGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 13 0.43
23 3 0.10
24 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAATATATAAAAGAAAGTCTTA
Found at i:23253653 original size:13 final size:13
Alignment explanation
Indices: 23253635--23253659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23253625 AAATGCGTAG
23253635 ATAAATAAATGAA
1 ATAAATAAATGAA
23253648 ATAAATAAATGA
1 ATAAATAAATGA
23253660 TAGATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATAAATAAATGAA
Found at i:23254805 original size:132 final size:132
Alignment explanation
Indices: 23254570--23255438 Score: 1257
Period size: 132 Copynumber: 6.6 Consensus size: 132
23254560 CTGGCCCATG
*
23254570 GATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
*
23254635 TGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
66 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
*
23254700 TG
131 TC
*
23254702 GATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
* *
23254767 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCT
66 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
*
23254832 TG
131 TC
*
23254834 GATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
*
23254899 TGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
66 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
23254964 TC
131 TC
* *
23254966 GATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACA
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
*
23255031 TGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
66 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
23255096 TC
131 TC
* * * * * * * * * * *
23255098 GATCCACTTCATGCCAATACATG-AGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC-ACGCCAATAC
** * *** *** * *
23255162 GGGAAGACAAGATCTGC-ATCTTCGAT-TCACTTC-ATGCCAATACATG-AGACAAGATTTGCTT
65 ATGAAGACAAGATCTGCTTTCTTCGATCT-ACTTCGCCACCAATATGGGAAGACAAGATCTGC-A
23255223 TCTTC
128 TCTTC
* * * * * * *
23255228 GATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACGCCAATAC
1 GATCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAC
*
23255292 ATG-AGACAAGATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
65 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATC
23255356 TTC
130 TTC
* *
23255359 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCCTCGATCTACTTCATGCCAATACA
1 GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
23255424 TGAAGACAAGATCTG
66 TGAAGACAAGATCTG
23255439 TTTTAATGAC
Statistics
Matches: 657, Mismatches: 69, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
129 24 0.04
130 65 0.10
131 107 0.16
132 461 0.70
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
GATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
TC
Found at i:23255151 original size:87 final size:88
Alignment explanation
Indices: 23254603--23255412 Score: 841
Period size: 87 Copynumber: 9.2 Consensus size: 88
23254593 AAGATAGGAC
* * * *** * * *
23254603 CTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTT
* * ***
23254667 CGCCACCAATATGGGAAGACAAGAT
65 C-ACGCCAATACATGAAGACAAGAT
* * * * * * * * * *
23254692 CTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTT
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTT
23254755 CACGCCAATACATGAAGACAAGAT
65 CACGCCAATACATGAAGACAAGAT
* * *
23254779 CTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCACTTC
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
** * * * * *
23254844 -CTATCAATATAGGAAGATAGGAC
66 AC-GCCAATACATGAAGACAAGAT
* * * *** * * *
23254867 CTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTT
* * ***
23254931 CGCCACCAATATGGGAAGACAAGAT
65 C-ACGCCAATACATGAAGACAAGAT
* * * * * * * *
23254956 CTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTT
23255019 CACGCCAATACATGAAGACAAGAT
65 CACGCCAATACATGAAGACAAGAT
*
23255043 CTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
*
23255108 ATGCCAATACATG-AGACAAGAT
66 ACGCCAATACATGAAGACAAGAT
*
23255130 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATTCACTTC
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
*
23255195 ATGCCAATACATG-AGACAAGAT
66 ACGCCAATACATGAAGACAAGAT
*
23255217 TTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
23255282 ACGCCAATACATG-AGACAAGAT
66 ACGCCAATACATGAAGACAAGAT
*
23255304 TTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
1 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
* * * * * *
23255369 -CTACCAATATAGGAAGATAGGAC
66 AC-GCCAATACATGAAGACAAGAT
* *
23255392 CTGCTATCCTCGATCTACTTC
1 CTGCTTTCTTCGATCTACTTC
23255413 ATGCCAATAC
Statistics
Matches: 618, Mismatches: 93, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
86 1 0.00
87 317 0.51
88 232 0.38
89 67 0.11
90 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (88 bp):
CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
ACGCCAATACATGAAGACAAGAT
Found at i:23268487 original size:43 final size:44
Alignment explanation
Indices: 23268426--23268523 Score: 135
Period size: 43 Copynumber: 2.2 Consensus size: 44
23268416 GGTATAGGAA
** *
23268426 TTGTAGCTTCAATATGCTCCACTGTAGCTTCAGAGAGATAAGAT
1 TTGTAGCTTCAATATGCTCCACTACAACTTCAGAGAGATAAGAT
* * *
23268470 TTG-AGCTTTAATCTGCTCCACTACAACTTCAGAGAGATAAGGT
1 TTGTAGCTTCAATATGCTCCACTACAACTTCAGAGAGATAAGAT
23268513 TTGTAGCTTCA
1 TTGTAGCTTCA
23268524 TCTTACTCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
43 37 0.80
44 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (44 bp):
TTGTAGCTTCAATATGCTCCACTACAACTTCAGAGAGATAAGAT
Found at i:23268545 original size:44 final size:43
Alignment explanation
Indices: 23268453--23268557 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 43
23268443 TCCACTGTAG
* *
23268453 CTTCAGAGAGATAAGATTTGAGCTTTAATCTGCTCCACTACAA
1 CTTCAGAGAGATAAGATTTGAGCTTTAATCTACTCCACCACAA
* * *
23268496 CTTCAGAGAGATAAGGTTTGTAGC-TTCATCTTACTCCACCGCAA
1 CTTCAGAGAGATAAGATTTG-AGCTTTAATC-TACTCCACCACAA
* * *
23268540 TTTCAGGGAGATACGATT
1 CTTCAGAGAGATAAGATT
23268558 CGCCATGGTA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 24 0.47
44 27 0.53
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTCAGAGAGATAAGATTTGAGCTTTAATCTACTCCACCACAA
Found at i:23277321 original size:18 final size:18
Alignment explanation
Indices: 23277261--23277321 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
23277251 TGTACCAATT
23277261 TCTGCCATGTCGTCCAGA
1 TCTGCCATGTCGTCCAGA
* * * **
23277279 TCTACTCTTGTTCTATCCATT
1 TCTGC-CATG-TC-GTCCAGA
23277300 TCTGCCATGTCGTCCAGA
1 TCTGCCATGTCGTCCAGA
23277318 TCTG
1 TCTG
23277322 GAACAATGGG
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
18 12 0.40
19 5 0.17
20 5 0.17
21 8 0.27
ACGTcount: A:0.15, C:0.31, G:0.16, T:0.38
Consensus pattern (18 bp):
TCTGCCATGTCGTCCAGA
Found at i:23277840 original size:19 final size:18
Alignment explanation
Indices: 23277818--23277853 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
23277808 AAGGCCTTTT
*
23277818 ATGAAATTTAATGCATGAG
1 ATGAAATGTAATG-ATGAG
23277837 ATGAAATGTAATGATGA
1 ATGAAATGTAATGATGA
23277854 TGAATGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (18 bp):
ATGAAATGTAATGATGAG
Found at i:23281067 original size:5 final size:5
Alignment explanation
Indices: 23281057--23281091 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
23281047 ATTACTTGAC
23281057 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT
23281092 GGAAAATGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:23285797 original size:41 final size:41
Alignment explanation
Indices: 23285731--23285946 Score: 290
Period size: 41 Copynumber: 5.3 Consensus size: 41
23285721 CTCAGATCTA
*
23285731 AAAAGCGCCGCTAACT-CTCATATCTTTAGCGGCGTTTTTGG
1 AAAAGCGCCGCTAA-TGCTCAGATCTTTAGCGGCGTTTTTGG
* *
23285772 AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCATTTTTGA
1 AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGG
* *
23285813 AAAAGCGCCGCTAATTCTCAGATCTTTAGCAGCGTTTTTGG
1 AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGG
* *
23285854 GAAAGCGCCGCTAATGCTTAGATCTTTAGCGGCGTTTTTGG
1 AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGG
* * ** * * *
23285895 AAAAGCGCCGTTAATGCTCGGGGCTTTAGCGACATTTTTGA
1 AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGG
23285936 AAAAGCGCCGC
1 AAAAGCGCCGC
23285947 AAAAACATTT
Statistics
Matches: 153, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 1 0.01
41 152 0.99
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (41 bp):
AAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGG
Found at i:23286386 original size:14 final size:15
Alignment explanation
Indices: 23286353--23286386 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
23286343 TAAGGTTTAT
23286353 AGATTATGGAATTAG
1 AGATTATGGAATTAG
23286368 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
*
23286382 GGATT
1 AGATT
23286387 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:23286585 original size:82 final size:82
Alignment explanation
Indices: 23286448--23286625 Score: 252
Period size: 82 Copynumber: 2.2 Consensus size: 82
23286438 GAGTTAGGGA
* * *
23286448 TTTAGGGTTTATGGATTCAGTGTCAGGTTAGGCTTTAGAGTTTAGATTAATTAGTGTATTT-TAA
1 TTTAGGGTTTAGGGATTCAGGGTCAGGTTAGGCTTTAGAGTTTAGACTAATTAGTGT-TTTCTAA
23286512 TTTATATATTAAATAATG
65 TTTATATATTAAATAATG
* * * * *
23286530 TTTAGGGGTTAGGGATTCGGGGTCGGGTTAGGGTTT-GTGATTTAGACTAATTAGTGTTTTCTAA
1 TTTAGGGTTTAGGGATTCAGGGTCAGGTTAGGCTTTAGAG-TTTAGACTAATTAGTGTTTTCTAA
23286594 TTTATATATTAAATAATG
65 TTTATATATTAAATAATG
23286612 TTTAGGGTTTAGGG
1 TTTAGGGTTTAGGG
23286626 TTTGTGGTTA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
81 5 0.06
82 80 0.94
ACGTcount: A:0.26, C:0.04, G:0.26, T:0.44
Consensus pattern (82 bp):
TTTAGGGTTTAGGGATTCAGGGTCAGGTTAGGCTTTAGAGTTTAGACTAATTAGTGTTTTCTAAT
TTATATATTAAATAATG
Done.