Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 74 of 185
Found at i:23287753 original size:22 final size:23
Alignment explanation
Indices: 23287728--23287786 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
23287718 CTCCTCCCCC
*
23287728 AAAATCCCCAACTTTCCCGCC-T
1 AAAATCCCCAACTTTCCCCCCTT
*
23287750 AAAATCCCTAA-TTTCCCCCCTT
1 AAAATCCCCAACTTTCCCCCCTT
* *
23287772 GAAACCCCCAACTTT
1 AAAATCCCCAACTTT
23287787 ACAAACATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 19 0.63
23 3 0.10
ACGTcount: A:0.29, C:0.42, G:0.03, T:0.25
Consensus pattern (23 bp):
AAAATCCCCAACTTTCCCCCCTT
Found at i:23287993 original size:22 final size:23
Alignment explanation
Indices: 23287968--23288026 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
23287958 CTCCTCCCCC
*
23287968 AAAATCCCCAACTTTCCCGCC-T
1 AAAATCCCCAACTTTCCCCCCTT
*
23287990 AAAATCCCTAA-TTTCCCCCCTT
1 AAAATCCCCAACTTTCCCCCCTT
* *
23288012 GAAACCCCCAACTTT
1 AAAATCCCCAACTTT
23288027 ACAAACATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 19 0.63
23 3 0.10
ACGTcount: A:0.29, C:0.42, G:0.03, T:0.25
Consensus pattern (23 bp):
AAAATCCCCAACTTTCCCCCCTT
Found at i:23288154 original size:163 final size:163
Alignment explanation
Indices: 23287905--23288230 Score: 652
Period size: 163 Copynumber: 2.0 Consensus size: 163
23287895 CTTCGAGGAA
23287905 AATAAAAACGCCGCAAAAAATTTACTTTAAAAAAATAGGCCATTTTATAAAATCTCCTCCCCCAA
1 AATAAAAACGCCGCAAAAAATTTACTTTAAAAAAATAGGCCATTTTATAAAATCTCCTCCCCCAA
23287970 AATCCCCAACTTTCCCGCCTAAAATCCCTAATTTCCCCCCTTGAAACCCCCAACTTTACAAACAT
66 AATCCCCAACTTTCCCGCCTAAAATCCCTAATTTCCCCCCTTGAAACCCCCAACTTTACAAACAT
23288035 ACCGTCCTTTAAAATTTTTAACTCCATGCCCAT
131 ACCGTCCTTTAAAATTTTTAACTCCATGCCCAT
23288068 AATAAAAACGCCGCAAAAAATTTACTTTAAAAAAATAGGCCATTTTATAAAATCTCCTCCCCCAA
1 AATAAAAACGCCGCAAAAAATTTACTTTAAAAAAATAGGCCATTTTATAAAATCTCCTCCCCCAA
23288133 AATCCCCAACTTTCCCGCCTAAAATCCCTAATTTCCCCCCTTGAAACCCCCAACTTTACAAACAT
66 AATCCCCAACTTTCCCGCCTAAAATCCCTAATTTCCCCCCTTGAAACCCCCAACTTTACAAACAT
23288198 ACCGTCCTTTAAAATTTTTAACTCCATGCCCAT
131 ACCGTCCTTTAAAATTTTTAACTCCATGCCCAT
23288231 TGCTATATTT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 163 1.00
ACGTcount: A:0.36, C:0.32, G:0.05, T:0.27
Consensus pattern (163 bp):
AATAAAAACGCCGCAAAAAATTTACTTTAAAAAAATAGGCCATTTTATAAAATCTCCTCCCCCAA
AATCCCCAACTTTCCCGCCTAAAATCCCTAATTTCCCCCCTTGAAACCCCCAACTTTACAAACAT
ACCGTCCTTTAAAATTTTTAACTCCATGCCCAT
Found at i:23288156 original size:22 final size:23
Alignment explanation
Indices: 23288131--23288189 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
23288121 CTCCTCCCCC
*
23288131 AAAATCCCCAACTTTCCCGCC-T
1 AAAATCCCCAACTTTCCCCCCTT
*
23288153 AAAATCCCTAA-TTTCCCCCCTT
1 AAAATCCCCAACTTTCCCCCCTT
* *
23288175 GAAACCCCCAACTTT
1 AAAATCCCCAACTTT
23288190 ACAAACATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 19 0.63
23 3 0.10
ACGTcount: A:0.29, C:0.42, G:0.03, T:0.25
Consensus pattern (23 bp):
AAAATCCCCAACTTTCCCCCCTT
Found at i:23291986 original size:24 final size:23
Alignment explanation
Indices: 23291958--23292005 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 23
23291948 AATTTAAAAA
23291958 ATAAAACATAATATAATATTT-ATT
1 ATAAAA-ATAA-ATAATATTTGATT
*
23291982 ATAAAAATAAATATTATTTGATT
1 ATAAAAATAAATAATATTTGATT
23292005 A
1 A
23292006 AAATAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 8 0.36
24 6 0.27
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
ATAAAAATAAATAATATTTGATT
Found at i:23292131 original size:43 final size:43
Alignment explanation
Indices: 23292030--23292234 Score: 250
Period size: 43 Copynumber: 4.8 Consensus size: 43
23292020 AGATTATGTT
* * * * *
23292030 TTTAGCGGTGTTTTTGCTAGAAGCGCCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* *
23292072 TTTAGCGGCGTTTGTGATAAAAGCGTCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* *
23292115 TATAGCGGCGTTTGTGATAAAAGCGCCACTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* ** *
23292158 TTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
* ** *
23292201 TTTAGCGGCATTTGTGGGAAAAGTGCCGCTAAAG
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAG
23292235 ATTATGTTTT
Statistics
Matches: 144, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 31 0.22
43 113 0.78
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:23293578 original size:21 final size:22
Alignment explanation
Indices: 23293537--23293580 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
23293527 TATGATATGC
*
23293537 AATCTTAGAAGATATATTTTGT
1 AATCTTAGAAGATATAATTTGT
*
23293559 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
23293580 A
1 A
23293581 GATATCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:23293814 original size:23 final size:23
Alignment explanation
Indices: 23293770--23293814 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
23293760 TCTTATTTTG
* *
23293770 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
23293793 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
23293815 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:23294173 original size:37 final size:37
Alignment explanation
Indices: 23294097--23294173 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
23294087 CATACATACG
*
23294097 TTTTATAATATATACATATACGTACACATTTTTTAATT
1 TTTTATAATATATACATATACG-ACACATTTTATAATT
* *
23294135 TTTTATAA-ATATATATATAC-ACATAGTTTTATATATT
1 TTTTATAATATATACATATACGACACA-TTTTATA-ATT
23294172 TT
1 TT
23294174 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 4 0.12
36 6 0.18
37 16 0.47
38 8 0.24
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.52
Consensus pattern (37 bp):
TTTTATAATATATACATATACGACACATTTTATAATT
Found at i:23295951 original size:19 final size:20
Alignment explanation
Indices: 23295914--23295964 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 20
23295904 TTAAAAAAAT
*
23295914 AAATTATAAAAAGTTATTTTTA
1 AAATTAT-AAAAGTTA-TTTAA
23295936 AAATT-TAAAA-TTATTTAA
1 AAATTATAAAAGTTATTTAA
23295954 AAATTATAAAA
1 AAATTATAAAA
23295965 ATGATAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 8 0.30
20 4 0.15
21 1 0.04
22 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
AAATTATAAAAGTTATTTAA
Found at i:23295975 original size:42 final size:42
Alignment explanation
Indices: 23295887--23295986 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
23295877 TTTAATTAAT
*
23295887 TTTTTAAAATTTTAAAATTAAAAAAATAAATTATAAAAAGTTA
1 TTTTTAAAA-TTTAAAATTAAAAAAATAAATTATAAAAAGTAA
***
23295930 TTTTTAAAATTTAAAATT-ATTTAA-AAATTATAAAAATGATAA
1 TTTTTAAAATTTAAAATTAAAAAAATAAATTATAAAAA-G-TAA
*
23295972 TTTTT-AATTTTAAAA
1 TTTTTAAAATTTAAAA
23295987 AAATAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 12 0.24
41 13 0.26
42 16 0.32
43 9 0.18
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (42 bp):
TTTTTAAAATTTAAAATTAAAAAAATAAATTATAAAAAGTAA
Found at i:23296424 original size:23 final size:22
Alignment explanation
Indices: 23296391--23296433 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
23296381 ATAAAAAAAT
23296391 ATTTTTAAAAAA-TAATATGATG
1 ATTTTTAAAAAAGTAA-ATGATG
23296413 ATTTTTAGAAAAAGTAAATGA
1 ATTTTTA-AAAAAGTAAATGA
23296434 GGTATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 9 0.47
24 3 0.16
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (22 bp):
ATTTTTAAAAAAGTAAATGATG
Found at i:23299756 original size:54 final size:54
Alignment explanation
Indices: 23299665--23299774 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
23299655 TCCCCCATAA
* *
23299665 TCCCTTAATTCACTCCTAAAATCGCTCCCTTACTTCCCACTACACATCCACCAC
1 TCCCCTAACTCACTCCTAAAATCGCTCCCTTACTTCCCACTACACATCCACCAC
* *
23299719 TCCCCTAACTCACTCCTAAAATCGCT-TCTTCACTTCCCACTATACATCCACCAC
1 TCCCCTAACTCACTCCTAAAATCGCTCCCTT-ACTTCCCACTACACATCCACCAC
23299773 TC
1 TC
23299775 ATAAACCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 3 0.06
54 48 0.94
ACGTcount: A:0.25, C:0.45, G:0.02, T:0.28
Consensus pattern (54 bp):
TCCCCTAACTCACTCCTAAAATCGCTCCCTTACTTCCCACTACACATCCACCAC
Found at i:23301748 original size:114 final size:113
Alignment explanation
Indices: 23301435--23302214 Score: 727
Period size: 113 Copynumber: 6.9 Consensus size: 113
23301425 TTACCACAAT
* * * * * * *
23301435 GCGCCGCGAAATCTCTTAACCAAAACGC-TGTGTTTTCGTCTTGATGTATCTTAAAAGTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCAT-AGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGC
* * * * * * * *
23301499 GTTTACGCG-AAACGCCATTAAAGGACAGTAATAGCGGCGCTTTCT-GGAA
64 GCTTATG-GTAAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
* * * * *
23301548 ACGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGCG
* * * * * * * *
23301612 TTTATAGGAAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTAT-GGAA
65 CTTAT-GGTAAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
* * * * * * *
23301661 GCGCCGCAAACTATCTTAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * * *
23301726 CATATGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTAGCTA
65 CTTATGGT-AAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
* * ** * * *
23301776 GCGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
1 GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGC
* * * *
23301841 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAG-AA
66 TTATGGTAAA-CGCCGTTAAAGAATAGTAATAGCGGCGATTTGT-AGCAA
* * *
23301890 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * *
23301955 CTTA--GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTA
65 CTTATGGT-AAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
* * *
23302003 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * *
23302068 CTTA--GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTA
65 CTTATGGT-AAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
* * * *
23302116 GCGCCGCAAAATATCTTAACAAAAACGCAGT-GTTTTGATCTTAATGTATATAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCA-TAGTTTTGGTCTTGATGTATATAGAATTAGTGGCG
* * *
23302180 CTTACGGTAAACCGCCGCTAAAGAATATTAATAGC
65 CTTATGGTAAA-CGCCGTTAAAGAATAGTAATAGC
23302215 AGCAAAATAT
Statistics
Matches: 567, Mismatches: 84, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
112 52 0.09
113 280 0.49
114 174 0.31
115 61 0.11
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (113 bp):
GCGCCGCAAAATATCTTAACCAAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGC
TTATGGTAAACGCCGTTAAAGAATAGTAATAGCGGCGATTTGTAGCAA
Found at i:23302129 original size:340 final size:337
Alignment explanation
Indices: 23301435--23302506 Score: 1175
Period size: 340 Copynumber: 3.2 Consensus size: 337
23301425 TTACCACAAT
* * * * * * * *
23301435 GCGCCGCGAAATCTCTTAACCAAAACGCTGTGTTTTCG-TCTTGATGTATCTTAAAAGTAGTGGC
1 GCGCCGCAAAATATCTTAACAAAAACGCAGCGTTTT-GATCTTAATGTAT-ATAAAATTAGTGGC
* ** * * * *
23301499 GTTTACGCG-AAA-CGCCATTAAAGGACAGTAATAGCGGCGCTTTCTGGAAACGCCGCAAAATAG
64 GCTTACG-GTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTT-TGG-AACGCCGCAAAATAT
* * * * * ** *
23301562 CTTAACCAAAACGCA-GAGTTTGGTCTTGAGGTATCTTAGAATTAGTGGCGTTTA-TAGGAAAAC
126 CTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGT--G-AAAC
* * * * * * * * * *
23301625 GCCGTTAAAGTACAGTAATAGCGACGCTTTAT-GGAAGCGCCGCAAACTATCTTAAGCGAAACAC
188 GCCGTTAAAGCATAGTATTAGCGGCGCTTTGTAGAAAGCGCCGCAAAATATCTTAACCAAAACGC
* * * *
23301689 ATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCGCATATGGTCAAACGCCGCTAAAGAATAG
253 ATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGC-T-TGGTAAAACGCCGCTAAAGCATAG
23301754 TATTAGCGGCGATTTGTAGCTA
316 TATTAGCGGCGATTTGTAGCTA
*
23301776 GCGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
1 GCGCCGCAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
23301841 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAAGCGCCGCAAAATATCT
66 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTT-TG-GAA-CGCCGCAAAATATCT
23301906 TAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGT
128 TAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGT
* ** **
23301971 TAAAGCATAGTATTAGCGGCGATTTGTAGCTAGCGCCGCAAAATATCTTAACCAAAACGCATAAT
193 TAAAGCATAGTATTAGCGGCGCTTTGTAGAAAGCGCCGCAAAATATCTTAACCAAAACGCATCGT
* * * * * *
23302036 TTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTAAAGCATAGTATTAGC
258 TTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTGGTAAAACGCCGCTAAAGCATAGTATTAGC
23302101 GGCGATTTGTAGCTA
323 GGCGATTTGTAGCTA
*
23302116 GCGCCGCAAAATATCTTAACAAAAACGCAGTGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
1 GCGCCGCAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
23302181 TTACGGTAAACCGCCGCTAAAGAATATTAATA-----GC-------A----GCAAAATATCTTAA
66 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTTGGAACGCCGCAAAATATCTTAA
*
23302230 CCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTAA
131 CCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTAA
* * * * *
23302295 AGCATAGTATTAGCGGCGCTTGGATA-AAAGCGCCACCAAGTATCTGAACCAAAACGCATCGTTT
196 AGCATAGTATTAGCGGCGCTTTG-TAGAAAGCGCCGCAAAATATCTTAACCAAAACGCATCGTTT
* * * *
23302359 TGGTCTTGATGTATACTTGATTTAGTGGCGATTTCGGTAAAACGTCGCTAAAGCATAGTATTAGC
260 TGGTCTTGATGTATACTAGAATTAGTGGCG-CTT-GGTAAAACGCCGCTAAAGCATAGTATTAGC
* *
23302424 GGCGATTTGTTGATA
323 GGCGATTTGTAGCTA
* ** * * * * * *
23302439 GCGCCGCGACTTACCATAA-ACAAAACGCAACGTTTTGGTCTTAATTTATACTAAAATTAGTGTC
1 GCGCCGCAAAATATCTTAACA-AAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGC
23302503 GCTT
64 GCTT
23302507 TGTTGAAAGT
Statistics
Matches: 635, Mismatches: 83, Indels: 43
0.83 0.11 0.06
Matches are distributed among these distances:
321 154 0.24
322 5 0.01
323 78 0.12
324 16 0.03
326 1 0.00
335 2 0.00
339 1 0.00
340 159 0.25
341 101 0.16
342 86 0.14
343 31 0.05
344 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (337 bp):
GCGCCGCAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTTGGAACGCCGCAAAATATCTTAA
CCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTAA
AGCATAGTATTAGCGGCGCTTTGTAGAAAGCGCCGCAAAATATCTTAACCAAAACGCATCGTTTT
GGTCTTGATGTATACTAGAATTAGTGGCGCTTGGTAAAACGCCGCTAAAGCATAGTATTAGCGGC
GATTTGTAGCTA
Found at i:23302373 original size:208 final size:209
Alignment explanation
Indices: 23302008--23302411 Score: 598
Period size: 208 Copynumber: 1.9 Consensus size: 209
23301998 AGCTAGCGCC
23302008 GCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAG
1 GCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAG
* ** * *
23302073 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTAGCGCCGCAAAATATCTTAACAA
66 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGGTAGAAAGCGCCACAAAATATCTGAACAA
* *
23302138 AAACGCAGTGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGCTTACGGTAAACCGCCGCTAAA
131 AAACGCAGTGTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTAAA
23302202 GAATATTAATAGCA
196 GAATATTAATAGCA
*
23302216 GCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAG
1 GCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAG
* * * *
23302281 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGCTTGGATA-AAAGCGCCACCAAGTATCTGAACC
66 TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGG-TAGAAAGCGCCACAAAATATCTGAACA
* * ** * * *
23302345 AAAACGCA-TCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGATTTCGGTAAAACGTCGCTA
130 AAAACGCAGT-GTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTA
23302409 AAG
194 AAG
23302412 CATAGTATTA
Statistics
Matches: 174, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
207 1 0.01
208 141 0.81
209 32 0.18
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (209 bp):
GCAAAATATCTTAACCAAAACGCATAATTTTGGACTCGATGTATAGTAGAATTAGTGGCGCTTAG
TGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTGGTAGAAAGCGCCACAAAATATCTGAACAA
AAACGCAGTGTTTTGATCTTAATGTATACTAAAATTAGTGGCGATTACGGTAAAACGCCGCTAAA
GAATATTAATAGCA
Found at i:23302733 original size:14 final size:14
Alignment explanation
Indices: 23302664--23302734 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
23302654 ACAGTGTAAA
*
23302664 GTTTAAAGTTTAGG
1 GTTTAAGGTTTAGG
* * *
23302678 GTTTACGATGTA-G
1 GTTTAAGGTTTAGG
23302691 GTTTAAGG-TTAGG
1 GTTTAAGGTTTAGG
*
23302704 GTATTAGGGTGTTTAGG
1 GT-TTA-AG-GTTTAGG
23302721 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
23302735 AGTCTGGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 2 0.05
13 10 0.23
14 18 0.42
15 2 0.05
16 4 0.09
17 7 0.16
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:23303902 original size:22 final size:22
Alignment explanation
Indices: 23303876--23303922 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
23303866 ACTATTCCGA
*
23303876 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
23303898 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
23303920 TTA
1 TTA
23303923 TTACAGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:23304328 original size:71 final size:71
Alignment explanation
Indices: 23304229--23305068 Score: 1655
Period size: 71 Copynumber: 11.8 Consensus size: 71
23304219 TGAGTGGATT
23304229 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304294 TGAGTC
66 TGAGTC
23304300 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304365 TGAGTC
66 TGAGTC
23304371 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304436 TGAGTC
66 TGAGTC
23304442 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304507 TGAGTC
66 TGAGTC
23304513 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304578 TGAGTC
66 TGAGTC
23304584 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304649 TGAGTC
66 TGAGTC
23304655 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304720 TGAGTC
66 TGAGTC
23304726 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304791 TGAGTC
66 TGAGTC
23304797 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304862 TGAGTC
66 TGAGTC
23304868 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23304933 TGAGTC
66 TGAGTC
23304939 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
23305004 TGAGTC
66 TGAGTC
*
23305010 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAATTATGCTTTGG-TTCTGAAAT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATT-TGAAAT
23305069 CTGGATCTGG
Statistics
Matches: 767, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
70 2 0.00
71 765 1.00
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.50
Consensus pattern (71 bp):
TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
TGAGTC
Found at i:23305223 original size:14 final size:14
Alignment explanation
Indices: 23305204--23305233 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
23305194 ATAAAAGGTT
23305204 TTTAGTTAATCATC
1 TTTAGTTAATCATC
23305218 TTTAGTTAATCATC
1 TTTAGTTAATCATC
23305232 TT
1 TT
23305234 GCTGTTCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TTTAGTTAATCATC
Found at i:23306695 original size:11 final size:11
Alignment explanation
Indices: 23306658--23306697 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
23306648 GAATATCTCA
23306658 AACT-ATGGGT
1 AACTAATGGGT
*
23306668 AACTAGTGGGT
1 AACTAATGGGT
23306679 AACTAATGGGT
1 AACTAATGGGT
23306690 AACTAATG
1 AACTAATG
23306698 TATTATCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:23308113 original size:40 final size:40
Alignment explanation
Indices: 23308057--23308511 Score: 253
Period size: 40 Copynumber: 9.7 Consensus size: 40
23308047 AATACATTAC
*
23308057 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
23308097 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
23308150 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
23308194 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
23308247 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
23308291 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
23308344 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
23308388 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
23308441 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
23308485 TTACTAAAATACATTACTTACTAAAAT
1 TTACTAAAATACATTACTTACTAAAAT
23308512 ACATTACTTA
Statistics
Matches: 338, Mismatches: 9, Indels: 136
0.70 0.02 0.28
Matches are distributed among these distances:
40 122 0.36
43 20 0.06
44 12 0.04
46 12 0.04
47 16 0.05
50 16 0.05
51 12 0.04
53 12 0.04
54 20 0.06
57 96 0.28
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (40 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
Found at i:23308119 original size:57 final size:57
Alignment explanation
Indices: 23308031--23308471 Score: 329
Period size: 57 Copynumber: 7.6 Consensus size: 57
23308021 CGATTGAATG
*
23308031 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
23308088 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTAC-ATAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTA-AAATTTGT
* * *
23308145 TTAAATTTATTTCTAAAATACATTACTTACTAAAAT---TT-GTT--T-AAATTTAT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
* *
23308195 TACTAAAATACATTACTTACTAAAATACATTACTTAC-ATAAAT---TT-GTT--T-AAATTTAT
1 T--T-AAAT---TTA-TTACTAAAATACATTACTTACTA-AAATACATTACTTACTAAAATTT-G
23308252 T
57 T
*
23308253 TCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA-TTACTAAAATACATTACTTACTAAAA
1 T-T-AAAT---TTA-TTACTAAAA------TACA-TTACTTACTAAAATACATTACTTACTAAAA
*
23308317 TACATTACT
53 T---TT-GT
* *
23308326 TACATAAATTTGTT--T-AAAT---TTA-TTTCTAAAATACATTACTTACTAAAATTTGT
1 T---TAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
23308379 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTAC-ATAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTA-AAATTTGT
*
23308436 TTAAATTTATTTCTAAAATACATTACTTACTAAAAT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAAT
23308472 TTGTTTAAAT
Statistics
Matches: 329, Mismatches: 16, Indels: 78
0.78 0.04 0.18
Matches are distributed among these distances:
50 17 0.05
52 2 0.01
53 12 0.04
54 4 0.01
56 9 0.03
57 240 0.73
58 2 0.01
61 1 0.00
63 11 0.03
64 4 0.01
66 2 0.01
67 5 0.02
68 1 0.00
69 1 0.00
70 6 0.02
71 2 0.01
73 5 0.02
74 4 0.01
75 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGT
Found at i:23308176 original size:97 final size:97
Alignment explanation
Indices: 23308060--23308543 Score: 959
Period size: 97 Copynumber: 5.0 Consensus size: 97
23308050 ACATTACTTA
*
23308060 CTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
23308125 CATTACTTACATAAATTTGTTTAAATTTATTT
66 CATTACTTACATAAATTTGTTTAAATTTATTT
23308157 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
23308222 CATTACTTACATAAATTTGTTTAAATTTATTT
66 CATTACTTACATAAATTTGTTTAAATTTATTT
23308254 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
23308319 CATTACTTACATAAATTTGTTTAAATTTATTT
66 CATTACTTACATAAATTTGTTTAAATTTATTT
23308351 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
23308416 CATTACTTACATAAATTTGTTTAAATTTATTT
66 CATTACTTACATAAATTTGTTTAAATTTATTT
23308448 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
23308513 CATTACTTACATAAATTTGTTTAAATTTATT
66 CATTACTTACATAAATTTGTTTAAATTTATT
23308544 AAGATTGCTA
Statistics
Matches: 386, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 386 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (97 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
CATTACTTACATAAATTTGTTTAAATTTATTT
Found at i:23308528 original size:17 final size:17
Alignment explanation
Indices: 23308040--23308527 Score: 175
Period size: 17 Copynumber: 25.5 Consensus size: 17
23308030 GTTAAATTTA
23308040 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
23308057 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
23308074 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
23308097 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308114 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
23308131 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
23308154 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
23308171 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
23308194 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308211 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
23308228 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
23308251 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
23308268 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
23308291 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308308 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
23308325 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
23308348 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
23308365 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
23308388 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308405 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
23308422 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
23308445 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
23308462 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
23308485 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308502 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
23308519 TTACATAAA
1 TTAC-TAAA
23308528 TTTGTTTAAA
Statistics
Matches: 364, Mismatches: 34, Indels: 145
0.67 0.06 0.27
Matches are distributed among these distances:
16 27 0.07
17 189 0.52
18 20 0.05
22 16 0.04
23 85 0.23
24 27 0.07
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Found at i:23308713 original size:18 final size:18
Alignment explanation
Indices: 23308690--23308768 Score: 69
Period size: 18 Copynumber: 4.4 Consensus size: 18
23308680 AATAACTTAC
23308690 AACTTACATAATACATTT
1 AACTTACATAATACATTT
*
23308708 AACTTACATTACTTACA--T
1 AACTTACA-TA-ATACATTT
*
23308726 AA--TACATAATA-ACTTAC
1 AACTTACATAATACA-TT-T
23308743 AACTTACATAATACATTT
1 AACTTACATAATACATTT
23308761 AACTTACA
1 AACTTACA
23308769 ACTTACATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 18
0.69 0.06 0.26
Matches are distributed among these distances:
13 1 0.02
14 2 0.04
15 2 0.04
16 4 0.08
17 2 0.04
18 19 0.40
19 13 0.27
20 5 0.10
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:23308754 original size:26 final size:26
Alignment explanation
Indices: 23308673--23308949 Score: 337
Period size: 26 Copynumber: 11.0 Consensus size: 26
23308663 ATTAAAATAA
23308673 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
*
23308699 AATACAT-TTAACTTACATTACTTACAT
1 AATACATAATAACTTACA--ACTTACAT
23308726 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
*
23308752 AATACAT-TTAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
* * * *
23308777 AATACAT-TTGACTGACATA-ATACAT
1 AATACATAATAACTTACA-ACTTACAT
* * *
23308802 -TTA-ATTTACAACTT---AC--AC--
1 AATACA-TAATAACTTACAACTTACAT
23308820 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
*
23308846 AATACATAATAACTTACAACTTACAC
1 AATACATAATAACTTACAACTTACAT
23308872 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
23308898 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
23308924 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
23308950 TTAACTTACA
Statistics
Matches: 219, Mismatches: 16, Indels: 32
0.82 0.06 0.12
Matches are distributed among these distances:
19 9 0.04
20 3 0.01
21 1 0.00
22 2 0.01
23 1 0.00
24 5 0.02
25 49 0.22
26 125 0.57
27 15 0.07
28 9 0.04
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.32
Consensus pattern (26 bp):
AATACATAATAACTTACAACTTACAT
Found at i:23308957 original size:11 final size:10
Alignment explanation
Indices: 23308941--23308994 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
23308931 AATAACTTAC
23308941 AACTTACATTT
1 AACTTACA-TT
23308952 AACTTACA-T
1 AACTTACATT
23308961 AA--TACATTT
1 AACTTACA-TT
23308970 AACTTACA-T
1 AACTTACATT
23308979 AACTTACA-T
1 AACTTACATT
23308988 AACTTAC
1 AACTTAC
23308995 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:23308990 original size:18 final size:18
Alignment explanation
Indices: 23308880--23308994 Score: 70
Period size: 18 Copynumber: 6.5 Consensus size: 18
23308870 ACAATACATA
23308880 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
*
23308896 ATAATACATA-ATAACTTAC
1 AT-A-ACTTACATAACTTAC
*
23308915 --AACTTACATAATACATA-
1 ATAACTTACAT-A-ACTTAC
23308932 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
23308948 ATTTAACTTACATAA--TAC
1 A--TAACTTACATAACTTAC
23308966 ATTTAACTTACATAACTTAC
1 A--TAACTTACATAACTTAC
23308986 ATAACTTAC
1 ATAACTTAC
23308995 CATTGCAATT
Statistics
Matches: 79, Mismatches: 4, Indels: 30
0.70 0.04 0.27
Matches are distributed among these distances:
15 8 0.10
16 7 0.09
17 2 0.03
18 42 0.53
19 14 0.18
20 6 0.08
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:23314471 original size:21 final size:21
Alignment explanation
Indices: 23314445--23314515 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
23314435 CTACAACTTA
* *
23314445 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
23314466 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
23314487 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
23314508 AAGCAGAG
1 AAGCAGAG
23314516 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:23314758 original size:14 final size:14
Alignment explanation
Indices: 23314739--23314772 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
23314729 ATTGCTATTG
23314739 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
23314753 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
23314767 TTTGCT
1 GTTGCT
23314773 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:23314981 original size:126 final size:125
Alignment explanation
Indices: 23314840--23315128 Score: 335
Period size: 126 Copynumber: 2.3 Consensus size: 125
23314830 TTTTTGTATA
* * * *
23314840 AAAGCGCCACTAAAGAACATGTTCTTTCGCGGCGTTTGTAAAAAATGCCACTAAAGAACATGTTC
1 AAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAACGCCACTAAAGAACATGGTC
* *
23314905 TTTAGCGGCGATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCT
66 TTTAGCGGC-ATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTACCG
* * *** * *
23314966 TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGT
1 AAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAACGCCACTAAAGAACATGGT
* ***** * * **
23315031 CTTTAGTGGCATTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAGGG
65 CTTTAGCGGCATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTACCG
* *
23315092 AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
1 AAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT
23315129 TTTTTCTAAT
Statistics
Matches: 136, Mismatches: 26, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
125 3 0.02
126 102 0.75
127 31 0.23
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (125 bp):
AAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAACGCCACTAAAGAACATGGTC
TTTAGCGGCATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTACCG
Found at i:23314992 original size:42 final size:40
Alignment explanation
Indices: 23314844--23315214 Score: 303
Period size: 42 Copynumber: 8.8 Consensus size: 40
23314834 TGTATAAAAG
* * ***
23314844 CGCCACTAAAGAACATGTTCTTTCGCGGCGTTTGTAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT-TCTTAAA
* * *****
23314885 TGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TT--TTCTTAAA
* *
23314928 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT--CTTAAA
* *
23314970 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTCTTAAA
* * * *
23315012 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT--AAA
***
23315054 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAGGGAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT--CTTAAA
* * *
23315096 CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAAT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTCT-TAAA
* *
23315139 CGCCGCTAAAGAACATGTTCTTTAGTGGCATTTT-TTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT--AAA
* *
23315180 CGCCGCGAAAGAACATGTTCTTTAGTGGCGCTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTT
23315215 ATACAAAAAC
Statistics
Matches: 275, Mismatches: 38, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.00
40 6 0.02
41 62 0.23
42 136 0.49
43 62 0.23
44 8 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (40 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTTAAA
Found at i:23315016 original size:84 final size:81
Alignment explanation
Indices: 23314826--23315214 Score: 357
Period size: 84 Copynumber: 4.6 Consensus size: 81
23314816 CAAAAATAGT
* * * *** * *
23314826 GGCGTTTTTGTATAAAAGCGCCACTAAAGAACATGTTCTTTCGCGGCGTTTGTAAAAAATGCCAC
1 GGCGTTTTT-TA-CAAA-CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT-TTTTAAACGCCGC
23314891 TAAAGAACATGTTCTTTAGC
62 TAAAGAACATGTTCTTTAGC
**** * * * *
23314911 GGCGATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGC
1 GGCG-TT-TTTTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT--TTTAAACGCCGC
23314976 TAAAGAACATGTTCTTTAGC
62 TAAAGAACATGTTCTTTAGC
* * * * *
23314996 GGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTACAAACGCCGCT
1 GGCGTTTTTTAC-AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT--AAACGCCGCT
23315061 AAAGAACATGTTCTTTAGC
63 AAAGAACATGTTCTTTAGC
** * *
23315080 GGCGTTTTAGGGA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAATCGCCG
1 GGCGTTTT--TTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG--TTTTTT-TAAACGCCG
*
23315144 CTAAAGAACATGTTCTTTAGT
61 CTAAAGAACATGTTCTTTAGC
* * * *
23315165 GGCATTTTTTACAAACGCCGCGAAAGAACATGTTCTTTAGTGGCGCTTTT
1 GGCGTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
23315215 ATACAAAAAC
Statistics
Matches: 249, Mismatches: 42, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
82 6 0.02
83 2 0.01
84 159 0.64
85 72 0.29
86 9 0.04
87 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (81 bp):
GGCGTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTAAACGCCGCTAAA
GAACATGTTCTTTAGC
Found at i:23315129 original size:126 final size:126
Alignment explanation
Indices: 23314925--23315215 Score: 440
Period size: 126 Copynumber: 2.3 Consensus size: 126
23314915 ATTAGAAAAA
* * ** *
23314925 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGTTC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTACCGAAAACGCCGCTAAAGAACATGTTC
23314990 TTTAGCGGCG-TTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC
66 TTTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCA-TTTTTTAC
** *
23315051 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAGGGAAAACGCCGCTAAAGATCATGTTC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTACCGAAAACGCCGCTAAAGAACATGTTC
* * *
23315116 TTTAGCGGCGTTTTTTTTCTAATCGCCGCTAAAGAACATGTTCTTTAGTGGCATTTTTTAC
66 TTTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTAC
* *
23315177 AAACGCCGCGAAAGAACATGTTCTTTAGTGGCGCTTTTA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTA
23315216 TACAAAAACG
Statistics
Matches: 150, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
126 106 0.71
127 44 0.29
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (126 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTACCGAAAACGCCGCTAAAGAACATGTTC
TTTAGCGGCGTTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTAC
Found at i:23315941 original size:21 final size:21
Alignment explanation
Indices: 23315912--23315952 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23315902 AGAACACGCC
23315912 AACAAAAGCTCATAAGAGCTA
1 AACAAAAGCTCATAAGAGCTA
* * *
23315933 AACAGAAGCTCGTGAGAGCT
1 AACAAAAGCTCATAAGAGCT
23315953 GATCCACCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.15
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTA
Found at i:23318434 original size:38 final size:41
Alignment explanation
Indices: 23318375--23318460 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 41
23318365 AATTATATTT
* * *
23318375 AATACAATAAAATATTTATTATATTTAT-TT-GTGTTTTTC
1 AATATAATAAAATAATTATTATATTTATGTTAGTGTTTATC
23318414 AATATAATAAAA-AATTATTATATTTATGTTAGTGTTTATC
1 AATATAATAAAATAATTATTATATTTATGTTAGTGTTTATC
23318454 AATATAA
1 AATATAA
23318461 ATACTTTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 14 0.33
39 13 0.31
40 15 0.36
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (41 bp):
AATATAATAAAATAATTATTATATTTATGTTAGTGTTTATC
Found at i:23320118 original size:22 final size:22
Alignment explanation
Indices: 23320079--23320123 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
23320069 TTTTGACATA
* *
23320079 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
23320101 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
23320123 T
1 T
23320124 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:23323093 original size:8 final size:8
Alignment explanation
Indices: 23323082--23323122 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
23323072 AAAAATAATA
23323082 AAAATTAT
1 AAAATTAT
*
23323090 AAAAATAT
1 AAAATTAT
* *
23323098 AAACTAAT
1 AAAATTAT
23323106 AAAATTAT
1 AAAATTAT
23323114 AAAATTAT
1 AAAATTAT
23323122 A
1 A
23323123 TTTTTACTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAATTAT
Found at i:23325565 original size:18 final size:19
Alignment explanation
Indices: 23325530--23325566 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23325520 TATATTATAT
*
23325530 TTAATAATTTTTTGACATA
1 TTAATAATTTTATGACATA
23325549 TTAATAATTTTAT-ACATA
1 TTAATAATTTTATGACATA
23325567 GATTTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (19 bp):
TTAATAATTTTATGACATA
Found at i:23325588 original size:22 final size:22
Alignment explanation
Indices: 23325549--23325593 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
23325539 TTTTGACATA
* *
23325549 TTAATAATTTTATACATAGATT
1 TTAATAAATTGATACATAGATT
* *
23325571 TTAATAAATTGATTCATATATT
1 TTAATAAATTGATACATAGATT
23325593 T
1 T
23325594 CATATTAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAATAAATTGATACATAGATT
Found at i:23327818 original size:25 final size:25
Alignment explanation
Indices: 23327781--23327879 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 25
23327771 GACACACCAC
* * * *
23327781 AGCTCGCAAGAGCGTCCCGTTATTT
1 AGCTCTCATGAGCTTCCCATTATTT
* * **
23327806 AGCTCTCATGAGCATCCTATTAAAT
1 AGCTCTCATGAGCTTCCCATTATTT
* *
23327831 GGCTCTCTTGAGCTTCCCATTATTT
1 AGCTCTCATGAGCTTCCCATTATTT
* * *
23327856 GGCTTTCATGAGCTTCCCAATATT
1 AGCTCTCATGAGCTTCCCATTATT
23327880 GGCTTGCATG
Statistics
Matches: 58, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.35
Consensus pattern (25 bp):
AGCTCTCATGAGCTTCCCATTATTT
Found at i:23327897 original size:25 final size:25
Alignment explanation
Indices: 23327839--23327894 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 25
23327829 ATGGCTCTCT
* *
23327839 TGAGCTTCCCATTATTTGGCTTTCA
1 TGAGCTTCCCAATATTTGGCTTGCA
23327864 TGAGCTTCCCAATA-TTGGCTTGCA
1 TGAGCTTCCCAATATTTGGCTTGCA
23327888 TGAGCTT
1 TGAGCTT
23327895 TCCGATTACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (25 bp):
TGAGCTTCCCAATATTTGGCTTGCA
Found at i:23327939 original size:25 final size:25
Alignment explanation
Indices: 23327807--23328005 Score: 145
Period size: 25 Copynumber: 8.0 Consensus size: 25
23327797 CCGTTATTTA
* * *
23327807 GCTCTCATGAGCATCCTATTAAATG
1 GCTCTCATGAGCTTCCCATTACATG
* **
23327832 GCTCTCTTGAGCTTCCCATTATTTG
1 GCTCTCATGAGCTTCCCATTACATG
* * *
23327857 GCTTTCATGAGCTTCCCAATA-TTG
1 GCTCTCATGAGCTTCCCATTACATG
*
23327881 GCT-TGCATGAGCTTTCCGATTAC--G
1 GCTCT-CATGAGC-TTCCCATTACATG
* *
23327905 GCTCTTATGAGCTTACCATTACATG
1 GCTCTCATGAGCTTCCCATTACATG
* * *
23327930 GCTCACATGAGATTCCCGTTACATG
1 GCTCTCATGAGCTTCCCATTACATG
* * * *
23327955 GCTCACATGAGTTTCTCATTATATG
1 GCTCTCATGAGCTTCCCATTACATG
** *
23327980 GCTCGAAAGAGCTTCCCGATTACATG
1 GCTCTCATGAGCTTCCC-ATTACATG
23328006 CTCGTATGGG
Statistics
Matches: 139, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
23 9 0.06
24 23 0.17
25 100 0.72
26 7 0.05
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCATTACATG
Found at i:23331605 original size:20 final size:20
Alignment explanation
Indices: 23331568--23331606 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23331558 CATTTTTTCT
*
23331568 TTACTTAAATTTCTTTTTAA
1 TTACTTAAATTACTTTTTAA
23331588 TTAC-TAAATTACTATTTTA
1 TTACTTAAATTACT-TTTTA
23331607 CCCTTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (20 bp):
TTACTTAAATTACTTTTTAA
Found at i:23332339 original size:22 final size:22
Alignment explanation
Indices: 23332299--23332341 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
23332289 ATATATATTT
*
23332299 TTATATTATTAAAATAAAATAA
1 TTATATTATTAAAAAAAAATAA
23332321 TTATA-TATTAAATAAAAAATA
1 TTATATTATTAAA-AAAAAATA
23332342 GAACTTGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TTATATTATTAAAAAAAAATAA
Found at i:23334906 original size:5 final size:5
Alignment explanation
Indices: 23334897--23334930 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
23334887 TTTATAAAGC
*
23334897 TTATA ATATA -TATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA
23334931 AAGTTATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TTATA
Found at i:23335898 original size:43 final size:43
Alignment explanation
Indices: 23335836--23335960 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
23335826 GGATTCCGAT
23335836 ATGTGTTCT-CGTGTAAGACCACGTCTGGGACGTTGGCATCAAC
1 ATGTGTT-TACGTGTAAGACCACGTCTGGGACGTTGGCATCAAC
* * ** ***
23335879 CTGTGTTTACGTGTAAGACC-CTGTTTGGGACAATGGCATCGGT
1 ATGTGTTTACGTGTAAGACCAC-GTCTGGGACGTTGGCATCAAC
* ** *
23335922 ATGTGATTACACGTAAGACCACGTCTGGGATGTTGGCAT
1 ATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
23335961 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 2 0.03
43 61 0.95
44 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
ATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAAC
Found at i:23339335 original size:18 final size:17
Alignment explanation
Indices: 23339309--23339344 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23339299 TTTGGTTATA
23339309 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
23339327 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
23339344 T
1 T
23339345 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:23340266 original size:2 final size:2
Alignment explanation
Indices: 23340259--23340283 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23340249 TTTGTTCTTT
23340259 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
23340284 GGGGCACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23342215 original size:43 final size:43
Alignment explanation
Indices: 23342128--23342290 Score: 217
Period size: 43 Copynumber: 3.8 Consensus size: 43
23342118 AGCTCGTACA
* *
23342128 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAATCACAAA-TCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAAT-A-AAAGTCG
* *
23342171 ATGTC-ACTGTCCCAGACAG-GGTCTTACACGAAAATAGAAGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAAATAAAAGTCG
23342214 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAATAAAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAATAAAAGTCG
*
23342257 ATGCCAACGTCTCAGACGTGGTCTTACACGAAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAA
23342291 AAATTATCAG
Statistics
Matches: 107, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
42 5 0.05
43 96 0.90
44 6 0.06
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAAATAAAAGTCG
Found at i:23344523 original size:7 final size:7
Alignment explanation
Indices: 23344511--23344538 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
23344501 TCACGAACAT
23344511 AAAAATA
1 AAAAATA
23344518 AAAAATA
1 AAAAATA
23344525 AAAAATA
1 AAAAATA
23344532 AAAAATA
1 AAAAATA
23344539 CAGAGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:23345348 original size:8 final size:8
Alignment explanation
Indices: 23345335--23345360 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
23345325 TATTTCTCAC
23345335 TATTATAT
1 TATTATAT
23345343 TATTATAT
1 TATTATAT
23345351 TATTATAT
1 TATTATAT
23345359 TA
1 TA
23345361 AAAATGGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:23348001 original size:58 final size:57
Alignment explanation
Indices: 23347967--23348110 Score: 168
Period size: 58 Copynumber: 2.5 Consensus size: 57
23347957 TTAGTTCATA
23347967 TAATAATAATTATATTAAGAATTTTATAAAATTATATATTATTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATTTTATAAAATTATATATTATTTTATTAAATTATA-T
* ** * * *
23348025 TAATAATAATTATATTAA-AATATGGTTAAATTATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTATATTAAGAATTTTATAAAATTATATATTA-TTTTATTAAATTA-TAT
*
23348083 TAATAATAATCT-TATTAA-AATTTAATAA
1 TAATAATAAT-TATATTAAGAATTTTATAA
23348111 CAATAACAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
57 17 0.23
58 54 0.74
59 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (57 bp):
TAATAATAATTATATTAAGAATTTTATAAAATTATATATTATTTTATTAAATTATAT
Found at i:23348297 original size:16 final size:16
Alignment explanation
Indices: 23348278--23348316 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
23348268 CTAATTACAA
23348278 CTCTATTCAATTGCAG
1 CTCTATTCAATTGCAG
23348294 CTCTATTCAATTGCAG
1 CTCTATTCAATTGCAG
23348310 CTCTATT
1 CTCTATT
23348317 TCATTACAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.41
Consensus pattern (16 bp):
CTCTATTCAATTGCAG
Found at i:23360000 original size:50 final size:50
Alignment explanation
Indices: 23359885--23360127 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
23359875 GATAATAACA
* ** * *
23359885 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
23359936 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
23359986 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
23360036 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
23360086 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
23360128 TTACCCAAAT
Statistics
Matches: 176, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 143 0.81
51 33 0.19
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:23360243 original size:13 final size:13
Alignment explanation
Indices: 23360222--23360253 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
23360212 GCTTGGATCA
*
23360222 TCATCAAATAAAT
1 TCATAAAATAAAT
23360235 TCATAAAATAAAT
1 TCATAAAATAAAT
23360248 TCATAA
1 TCATAA
23360254 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:23360500 original size:29 final size:30
Alignment explanation
Indices: 23360463--23360522 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
23360453 GCCCTCGACT
*
23360463 CTAACTTTTT-CAAAATTACAATTTTGCCC
1 CTAAATTTTTACAAAATTACAATTTTGCCC
* *
23360492 CTAAATTTTTACATAATTACATTTTTGCCC
1 CTAAATTTTTACAAAATTACAATTTTGCCC
23360522 C
1 C
23360523 AAGGCTCGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.43
Consensus pattern (30 bp):
CTAAATTTTTACAAAATTACAATTTTGCCC
Found at i:23363399 original size:18 final size:18
Alignment explanation
Indices: 23363346--23363399 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
23363336 AAATAGTGTC
* *
23363346 ATTCATTTCCAAAACATT
1 ATTCATTTACAAAACGTT
*
23363364 ATTCATTTACAAATCGTT
1 ATTCATTTACAAAACGTT
23363382 ATTCAATTT-CAAAACGTT
1 ATTC-ATTTACAAAACGTT
23363400 TTCTTATTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 27 0.87
19 4 0.13
ACGTcount: A:0.37, C:0.19, G:0.04, T:0.41
Consensus pattern (18 bp):
ATTCATTTACAAAACGTT
Found at i:23367103 original size:70 final size:70
Alignment explanation
Indices: 23367020--23367163 Score: 270
Period size: 70 Copynumber: 2.1 Consensus size: 70
23367010 ATATTAAATC
*
23367020 ACAATTTCATACAATTTCTTCTTGTAAATTAAACGATGTTAAATATATAATTAGGGTTTGACTGA
1 ACAATTTCATACAATTTCTTCTCGTAAATTAAACGATGTTAAATATATAATTAGGGTTTGACTGA
23367085 TAAAA
66 TAAAA
*
23367090 ACAATTTCATACAATTTCTTCTCGTAAATTAAACGATGTTAAATATATAATTAGGGTTTGGCTGA
1 ACAATTTCATACAATTTCTTCTCGTAAATTAAACGATGTTAAATATATAATTAGGGTTTGACTGA
23367155 TAAAA
66 TAAAA
23367160 ACAA
1 ACAA
23367164 CCGTACCGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (70 bp):
ACAATTTCATACAATTTCTTCTCGTAAATTAAACGATGTTAAATATATAATTAGGGTTTGACTGA
TAAAA
Found at i:23378845 original size:249 final size:248
Alignment explanation
Indices: 23378407--23378900 Score: 823
Period size: 249 Copynumber: 2.0 Consensus size: 248
23378397 TCTTCTCATG
23378407 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCGGTATTCACTCGTAGT
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCGGTATTCACTCGTAGT
* * * *
23378472 ATGCGATATCATTTTCCTAATTTTAAACCTGTCTTTAGTAGATGTTTTTGCCTACTTGATTCATA
66 ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
23378537 AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCAGAAAGAATTTTAGATAGC
131 AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCAGAAAGAATTTTAGATAGC
*
23378602 CGATTGAAG-TTTTCTGGGAAATAAGGTGTGAGACAAAAAAAGTATCATGGAGGT
196 CGATGGAAGTTTTTC-GGGAAATAAGGTGTGAGAC-AAAAAAGTATCATGGAGGT
*
23378656 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCGGTATTCAAC-CGTGG
1 GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCGGTATTC-ACTCGTAG
23378720 TATGCGATATCATCTTCCTAATTCTAAA-CAGCTCTTTAGTAGATGTTTCTGCCTACTTGATTCA
65 TATGCGATATCATCTTCCTAATTCTAAACCAG-TCTTTAGTAGATGTTTCTGCCTACTTGATTCA
* * * *
23378784 TAAATACATAAAATCTTGTTTTTGGTTCTTCATTGTGTATTTTGTCCCGGTAAGAATTTTAGATA
129 TAAATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCAGAAAGAATTTTAGATA
* *
23378849 GCTGATGGAAGTTTTTCGGGAAATAAGGTGTGAGACGAAAAAGTATCATGGA
194 GCCGATGGAAGTTTTTCGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGA
23378901 AGCCCTAGGA
Statistics
Matches: 230, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
248 17 0.07
249 206 0.90
250 7 0.03
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (248 bp):
GTAAGCATTTCATTGACATGGATTGCAGCATATGAACTTTGTTTGATTCGGTATTCACTCGTAGT
ATGCGATATCATCTTCCTAATTCTAAACCAGTCTTTAGTAGATGTTTCTGCCTACTTGATTCATA
AATACATAAAATCTTGTTCTTGGTTCTTCATTGAGTATTTTGTCCCAGAAAGAATTTTAGATAGC
CGATGGAAGTTTTTCGGGAAATAAGGTGTGAGACAAAAAAGTATCATGGAGGT
Found at i:23390740 original size:40 final size:40
Alignment explanation
Indices: 23390682--23390888 Score: 279
Period size: 40 Copynumber: 5.2 Consensus size: 40
23390672 AAATGCTTTT
* * *
23390682 TGAATGCACAAACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
* ** *
23390722 TAAATGCACATACATGCCCCTGTTTGTACTTTTTTATCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
* * *
23390762 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
*
23390802 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTGCCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
** *
23390842 TGAATGCACATACATGCCATTGTTTGTACTTTGGCACCCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTA-CCCC
23390883 TGAATG
1 TGAATG
23390889 TTTATAAAGT
Statistics
Matches: 145, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 135 0.93
41 10 0.07
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
Found at i:23390782 original size:20 final size:20
Alignment explanation
Indices: 23390759--23390859 Score: 69
Period size: 20 Copynumber: 5.0 Consensus size: 20
23390749 ACTTTTTTAT
23390759 CCCTGAATGCACATACGTGC
1 CCCTGAATGCACATACGTGC
** * * *
23390779 CCCTGTTTGTAC-TTCGATAC
1 CCCTGAATGCACATACG-TGC
*
23390799 CCCTGAATGCACATACATGC
1 CCCTGAATGCACATACGTGC
** * * **
23390819 CCCTGTTTGTACTTTGGTGC
1 CCCTGAATGCACATACGTGC
*
23390839 CCCTGAATGCACATACATGC
1 CCCTGAATGCACATACGTGC
23390859 C
1 C
23390860 ATTGTTTGTA
Statistics
Matches: 54, Mismatches: 25, Indels: 4
0.65 0.30 0.05
Matches are distributed among these distances:
19 3 0.06
20 49 0.91
21 2 0.04
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.29
Consensus pattern (20 bp):
CCCTGAATGCACATACGTGC
Found at i:23391978 original size:40 final size:40
Alignment explanation
Indices: 23391920--23392126 Score: 279
Period size: 40 Copynumber: 5.2 Consensus size: 40
23391910 AAATGCTTTT
* * *
23391920 TGAATGCACAAACGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
* ** *
23391960 TAAATGCACATACATGCCCCTGTTTGTACTTTTTTATCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
* * *
23392000 TGAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
*
23392040 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTGCCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
** *
23392080 TGAATGCACATACATGCCATTGTTTGTACTTTGGCACCCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTA-CCCC
23392121 TGAATG
1 TGAATG
23392127 TTTATAATGT
Statistics
Matches: 145, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 135 0.93
41 10 0.07
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
Found at i:23392020 original size:20 final size:20
Alignment explanation
Indices: 23391997--23392097 Score: 69
Period size: 20 Copynumber: 5.0 Consensus size: 20
23391987 ACTTTTTTAT
23391997 CCCTGAATGCACATACGTGC
1 CCCTGAATGCACATACGTGC
** * * *
23392017 CCCTGTTTGTAC-TTCGATAC
1 CCCTGAATGCACATACG-TGC
*
23392037 CCCTGAATGCACATACATGC
1 CCCTGAATGCACATACGTGC
** * * **
23392057 CCCTGTTTGTACTTTGGTGC
1 CCCTGAATGCACATACGTGC
*
23392077 CCCTGAATGCACATACATGC
1 CCCTGAATGCACATACGTGC
23392097 C
1 C
23392098 ATTGTTTGTA
Statistics
Matches: 54, Mismatches: 25, Indels: 4
0.65 0.30 0.05
Matches are distributed among these distances:
19 3 0.06
20 49 0.91
21 2 0.04
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.29
Consensus pattern (20 bp):
CCCTGAATGCACATACGTGC
Found at i:23394829 original size:24 final size:24
Alignment explanation
Indices: 23394787--23394839 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
23394777 GCTAGGATAA
* *
23394787 TTAAAATATTATCTGTTAACATAT
1 TTAAAATATTATCTATTAACACAT
*
23394811 TTAAAATATTAT-TAATTAATACAT
1 TTAAAATATTATCT-ATTAACACAT
23394835 TTAAA
1 TTAAA
23394840 TGTTACGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAAAATATTATCTATTAACACAT
Found at i:23395940 original size:69 final size:69
Alignment explanation
Indices: 23395860--23396000 Score: 255
Period size: 69 Copynumber: 2.0 Consensus size: 69
23395850 CAGTATCATA
23395860 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGCATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGCATATATATA
23395925 CATC
66 CATC
* * *
23395929 TTAACATCATACTTCAAGCAAAAGATCTTTCTCAGGTCAACTTAATTTGTTTGAGCATATATATA
1 TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGCATATATATA
23395994 CATC
66 CATC
23395998 TTA
1 TTA
23396001 TAGGAAACAA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (69 bp):
TTAACATCATACTTCAAGCAAAAGAACTTTCTCAGGTCAAATTAATGTGTTTGAGCATATATATA
CATC
Found at i:23406100 original size:3 final size:3
Alignment explanation
Indices: 23406092--23406118 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23406082 TGAAGTTGAT
23406092 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
23406119 AATGGCCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23406657 original size:21 final size:21
Alignment explanation
Indices: 23406611--23406657 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
23406601 AGGGTCAGTT
*
23406611 CTTCATTGCTTAAAAAAAGTA
1 CTTCTTTGCTTAAAAAAAGTA
23406632 CTTCTTTGCTTAAAAAAAGTA
1 CTTCTTTGCTTAAAAAAAGTA
23406653 CTTCT
1 CTTCT
23406658 GACTCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (21 bp):
CTTCTTTGCTTAAAAAAAGTA
Found at i:23407240 original size:13 final size:13
Alignment explanation
Indices: 23407224--23407276 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
23407214 TTTAAACTAA
23407224 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
23407237 ACTTTTTC-ATAGC
1 AC-TTTTCAAAAGC
*
23407250 ACTTTTCAAAATC
1 ACTTTTCAAAAGC
23407263 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
23407276 A
1 A
23407277 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 5 0.15
13 24 0.71
14 5 0.15
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:23411688 original size:25 final size:25
Alignment explanation
Indices: 23411651--23411728 Score: 104
Period size: 25 Copynumber: 3.2 Consensus size: 25
23411641 ACACCCAGCC
*
23411651 GTGTCCCA-GCCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGTGCCAGGCT
23411675 GTGTCACACGCCCGTGTGCCAGGCT
1 GTGTCACACGCCCGTGTGCCAGGCT
* * * *
23411700 ATGTCACACGCCCATGTGTCAGGCC
1 GTGTCACACGCCCGTGTGCCAGGCT
23411725 GTGT
1 GTGT
23411729 AACTCTCGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 7 0.15
25 40 0.85
ACGTcount: A:0.13, C:0.35, G:0.31, T:0.22
Consensus pattern (25 bp):
GTGTCACACGCCCGTGTGCCAGGCT
Found at i:23414886 original size:99 final size:98
Alignment explanation
Indices: 23414707--23414885 Score: 272
Period size: 99 Copynumber: 1.8 Consensus size: 98
23414697 TCTTAAAACC
* *
23414707 GAATGTATATTCACTATAAACATGAATAGTTGAATGCATATATACATATATGCTTAATAAATATT
1 GAATGTATATTCACTATAAACATGAATAGTCGAATGCATATATACA-ATATGCTTAACAAATATT
*
23414772 AGCTCCAAATGTATATACACTTTGAACATGAACT
65 AGCACCAAATGTATATACACTTTGAACATGAACT
* *
23414806 GAATGTATATTTACTATAAACGTGAATAGTCGAATGCATATATAC-ATATGCTTAACAAATATTA
1 GAATGTATATTCACTATAAACATGAATAGTCGAATGCATATATACAATATGCTTAACAAATATTA
*
23414870 -CAACCAATTGTATATA
66 GC-ACCAAATGTATATA
23414886 TGTATTTATC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
96 1 0.01
97 30 0.41
99 42 0.58
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (98 bp):
GAATGTATATTCACTATAAACATGAATAGTCGAATGCATATATACAATATGCTTAACAAATATTA
GCACCAAATGTATATACACTTTGAACATGAACT
Found at i:23414940 original size:35 final size:35
Alignment explanation
Indices: 23414873--23414941 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 35
23414863 AATATTACAA
* * * *
23414873 CCAATTGTATATATGTATTTATCACCTGCATATAT
1 CCAATTGCATATATGTACTTAACACCTACATATAT
**
23414908 CCAATTGCATATATGTACTTAACATGTACATATA
1 CCAATTGCATATATGTACTTAACACCTACATATA
23414942 ACTAAACCTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (35 bp):
CCAATTGCATATATGTACTTAACACCTACATATAT
Found at i:23415508 original size:41 final size:41
Alignment explanation
Indices: 23415312--23415507 Score: 313
Period size: 41 Copynumber: 4.8 Consensus size: 41
23415302 TGATTCAGTA
* *
23415312 CACCGGCAATT-AGCCTACTAGACGTAAAGTCTGAAATATTT
1 CACCGGC-ATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
*
23415353 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
23415394 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
* * *
23415435 CACCAGCATTAAGCTTGCTAGACGTAAAGTCTAAAACATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
*
23415476 CACCGGCATCAAGCCTGCTAGACGTAAAGTCT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCT
23415508 ATAAAATCCA
Statistics
Matches: 146, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 3 0.02
41 143 0.98
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAACATTT
Found at i:23426534 original size:46 final size:46
Alignment explanation
Indices: 23426461--23426636 Score: 291
Period size: 46 Copynumber: 3.8 Consensus size: 46
23426451 ACAATGCTAT
*
23426461 AACTCAGTATGGTTTTC-TTCACCGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCGTT-ACTGAAATACCATACCTACTTTTCAC
23426507 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACTTTTCAC
23426553 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACTTTTCAC
* * * *
23426599 AACTCAGCATGGTTTTCTTTACTAAAATATCATACCTA
1 AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTA
23426637 TGTTCCACAC
Statistics
Matches: 124, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
46 122 0.98
47 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCGTTACTGAAATACCATACCTACTTTTCAC
Found at i:23427749 original size:10 final size:10
Alignment explanation
Indices: 23427736--23427772 Score: 56
Period size: 10 Copynumber: 3.5 Consensus size: 10
23427726 ATGACACTCC
23427736 ATAAATATTT
1 ATAAATATTT
23427746 ATAAAAATATTT
1 AT--AAATATTT
23427758 ATAAATATTT
1 ATAAATATTT
23427768 ATAAA
1 ATAAA
23427773 AATATTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 15 0.60
12 10 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATAAATATTT
Found at i:23427755 original size:12 final size:12
Alignment explanation
Indices: 23427738--23427781 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
23427728 GACACTCCAT
23427738 AAATATTTATAA
1 AAATATTTATAA
23427750 AAATATTTAT--
1 AAATATTTATAA
23427760 AAATATTTATAA
1 AAATATTTATAA
23427772 AAATATTTAT
1 AAATATTTAT
23427782 GGCTCAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.33
12 20 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:23427764 original size:22 final size:22
Alignment explanation
Indices: 23427736--23427781 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
23427726 ATGACACTCC
23427736 ATAAATATTTATAAAAATATTT
1 ATAAATATTTATAAAAATATTT
23427758 ATAAATATTTATAAAAATATTT
1 ATAAATATTTATAAAAATATTT
23427780 AT
1 AT
23427782 GGCTCAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATAAATATTTATAAAAATATTT
Found at i:23429181 original size:40 final size:41
Alignment explanation
Indices: 23429137--23429282 Score: 177
Period size: 41 Copynumber: 3.6 Consensus size: 41
23429127 AGGGGCACCA
* * *
23429137 AAGTACAAAAAGGGGCATGTATGTGCAATTTAGAAGTA-CG
1 AAGTACAAACAGGGGCATGTATGTGCAATTCAGAGGTACCG
* * **
23429177 AAGTACAAACAGGGGCATGTCTGTGCAATTCAGGGGTATTG
1 AAGTACAAACAGGGGCATGTATGTGCAATTCAGAGGTACCG
* * *
23429218 AAGTACAAACAGGGGCATTTACGTACAATTCAGAGGTACCG
1 AAGTACAAACAGGGGCATGTATGTGCAATTCAGAGGTACCG
* *
23429259 AAGTACAAACAGAGGCACGTATGT
1 AAGTACAAACAGGGGCATGTATGT
23429283 AAAACTCATA
Statistics
Matches: 88, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 33 0.38
41 55 0.62
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.21
Consensus pattern (41 bp):
AAGTACAAACAGGGGCATGTATGTGCAATTCAGAGGTACCG
Found at i:23429232 original size:20 final size:20
Alignment explanation
Indices: 23429207--23429270 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
23429197 CTGTGCAATT
23429207 CAGGGGTATTGAAGTACAAA
1 CAGGGGTATTGAAGTACAAA
* * * *
23429227 CAGGGGCATTTACGTACAATT
1 CAGGGGTATTGAAGTACAA-A
* **
23429248 CAGAGGTACCGAAGTACAAA
1 CAGGGGTATTGAAGTACAAA
23429268 CAG
1 CAG
23429271 AGGCACGTAT
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.38, C:0.17, G:0.27, T:0.19
Consensus pattern (20 bp):
CAGGGGTATTGAAGTACAAA
Found at i:23433944 original size:3 final size:3
Alignment explanation
Indices: 23433936--23433980 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
23433926 ATATTTTAGC
23433936 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23433981 TCCTACTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23434362 original size:18 final size:17
Alignment explanation
Indices: 23434339--23434377 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
23434329 TGCTTTAATT
*
23434339 TTTTATTTGTTTATTTAC
1 TTTTATTTGTTGATTT-C
23434357 TTTTATTTGTTGATTTC
1 TTTTATTTGTTGATTTC
23434374 TTTT
1 TTTT
23434378 CATTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTATTTGTTGATTTC
Found at i:23434688 original size:109 final size:109
Alignment explanation
Indices: 23434492--23434807 Score: 541
Period size: 109 Copynumber: 2.9 Consensus size: 109
23434482 AACGAAAATT
*
23434492 TTTTCAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
23434557 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTCAAAA
66 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTCAAAA
23434601 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
23434666 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTCAAAA
66 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTCAAAA
* * *
23434710 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
23434774 CGA-TT-TCTCGTTTAACCAAATTG-CTAAATATCCT
66 CGATTTCTCTCGTTCAACCAAA-TGACTTAATATCCT
23434808 CTTGAATTTC
Statistics
Matches: 200, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
106 24 0.12
107 4 0.02
108 25 0.12
109 147 0.74
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTCAAAA
Found at i:23438211 original size:8 final size:8
Alignment explanation
Indices: 23438194--23438233 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
23438184 GACTCGAAAG
23438194 AAAAAT-A
1 AAAAATCA
23438201 AAAAATCAA
1 AAAAATC-A
23438210 AAAAATCA
1 AAAAATCA
*
23438218 AAAAATAA
1 AAAAATCA
23438226 AAAAATCA
1 AAAAATCA
23438234 TAAGAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 6 0.21
8 15 0.52
9 8 0.28
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATCA
Found at i:23438215 original size:16 final size:16
Alignment explanation
Indices: 23438194--23438233 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
23438184 GACTCGAAAG
23438194 AAAAAT-AAAAAATCAA
1 AAAAATCAAAAAAT-AA
23438210 AAAAATCAAAAAATAA
1 AAAAATCAAAAAATAA
23438226 AAAAATCA
1 AAAAATCA
23438234 TAAGAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAATCAAAAAATAA
Found at i:23438243 original size:16 final size:16
Alignment explanation
Indices: 23438194--23438244 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
23438184 GACTCGAAAG
*
23438194 AAAAAT-AAAAAATCAA
1 AAAAATCAAAAAA-GAA
*
23438210 AAAAATCAAAAAATAA
1 AAAAATCAAAAAAGAA
* *
23438226 AAAAATCATAAGAGAA
1 AAAAATCAAAAAAGAA
23438242 AAA
1 AAA
23438245 GAAAGAAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 24 0.80
17 6 0.20
ACGTcount: A:0.78, C:0.06, G:0.04, T:0.12
Consensus pattern (16 bp):
AAAAATCAAAAAAGAA
Found at i:23438247 original size:6 final size:6
Alignment explanation
Indices: 23438238--23438276 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
23438228 AAATCATAAG
23438238 AGAAAA AGAAAGA AGGAAAA AG-AAA AGAAAA AGAAAA AG
1 AGAAAA AGAAA-A A-GAAAA AGAAAA AGAAAA AGAAAA AG
23438277 GAGAAGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.17
6 17 0.57
7 4 0.13
8 4 0.13
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:23438264 original size:15 final size:14
Alignment explanation
Indices: 23438239--23438278 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 14
23438229 AATCATAAGA
23438239 GAAAAAGAAAGAAG
1 GAAAAAGAAAGAAG
23438253 GAAAAAG-AA-AA-
1 GAAAAAGAAAGAAG
23438264 GAAAAAGAAA-AAG
1 GAAAAAGAAAGAAG
23438277 GA
1 GA
23438279 GAAGTCAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 7 0.29
12 6 0.25
13 4 0.17
14 7 0.29
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
GAAAAAGAAAGAAG
Found at i:23439460 original size:43 final size:44
Alignment explanation
Indices: 23439390--23439505 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
23439380 CCCAAAAAGG
* * * *
23439390 GCGGCTCAAATTTTGAAACAAAATGGGGCACGG-AGTGATTAGA
1 GCGGCTCAAATTTTGGATCAAATTGGGGCACGGTAGTGATCAGA
* * *
23439433 GCGGCTTAAATTTTGGATCAAATTGGGGCATGGTGGTGATCAGA
1 GCGGCTCAAATTTTGGATCAAATTGGGGCACGGTAGTGATCAGA
* * *
23439477 GCAGCTCAAATTTT-GATCAGATCGGGGCA
1 GCGGCTCAAATTTTGGATCAAATTGGGGCA
23439506 TATGATGATC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 41 0.67
44 20 0.33
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (44 bp):
GCGGCTCAAATTTTGGATCAAATTGGGGCACGGTAGTGATCAGA
Found at i:23445498 original size:50 final size:50
Alignment explanation
Indices: 23445423--23446929 Score: 734
Period size: 50 Copynumber: 30.2 Consensus size: 50
23445413 TCAGCAGCAG
* ** * **
23445423 AACAGATTGAAGCTACTACAACGAATTTTACTTCCTTGACATTGCAATTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* *
23445473 AACAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * * * ** ****
23445524 AA-AGATTGAAGCTACAACAGCGAATCTAACCTCCCTGGTGA-TGCAGCGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCC-CGACATTGCAATTA
* * * *
23445573 AACAGATCGAAGCTACGACGGTGAATCTCACTTCCCCGACATTGCAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * * ** ** * ****
23445624 AA-ATATTGAAGCCACAATGGTAAATCTTACTTCCTAGGCGA-TGCAGGGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTA
* * * *
23445673 AGCAGATTGAAGCTACAACAGCAAATCTCACTTCCCCGACATTGCAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * * * ** * * * *
23445724 AA-AGATCGAAGCCACAACGGTGAATCTTATTTCCTAGGCAGTGCAGTTG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * * * *
23445773 AACAGATTGAAGCTACAACAGTGGATCTTGCTTCCTCGACATTGTAATTTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAA-TTA
* * * * * * * **
23445824 AA-AGATCGAAGCCACAACAGTGAATCTTATTTCCCAGGCGA-TGC-AGCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTA
* * * * *
23445872 GAATAGATTGAAGCTACAACGGCGAATCTCACTTCCCAGACATTGTAGTTTA
1 -AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCA-ATTA
* * * * * * * ****
23445924 AA-AGATCGAAGCCACAACGGTGAATCGTATTTCCCAGGCGA-TGCAGCGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTA
* * * *
23445973 AATAGATTGAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAA-TTA
* * * * * ** ****
23446024 AA-AGATTGAAGCCACAATGGCGAATCTTATTTCCCAGGCGCTGCAGCGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * * * *
23446073 AACAGATTGAAGCTACGACGGTGAATCTCACTTTCTCGACATTGTAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * * * ****
23446124 AA-AGATTGAAG-TCACAACGGCAAATCTCA-TTTCCCTAGCGA-TGCAGCGG
1 AACAGATTGAAGCT-ACAACGGCGAATCTTACTTCCCCGA-C-ATTGCAATTA
* * * *
23446173 AACAGATTGAAGCTACAATGGCGAATCTCACTTCCCCAACATTACAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * ** * * **
23446224 AA-AGATTGAAGCCACCAA-GGCGAATCTTACCTT-CCAGACGGTACAGTGG
1 AACAGATTGAAGCTA-CAACGGCGAATCTTA-CTTCCCCGACATTGCAATTA
* * * *
23446273 AACAGATTGAAGCTACAACGGCAAATTTTGCTTCCCCGACATTGCGATTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * * ** **
23446323 AAAAGATTGAA-CCACAACGGCGAATCTTACTCCCCCGGCGGTGC-AGCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* ** * **
23446371 GAACAGATTGAAGCTACTACAACGAATTTTACTTCCTTGACATTGCAATTA
1 -AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * *
23446422 AACAAATTGAAGCTACGACGGCGAATCTCACTTCCCTGACATTGCAATTTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAA-TTA
* * * * * * ****
23446473 AA-AGATCGAAGCCACAACGGCGAATCTTATTTCCCAGGCGA-TGTAGCGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTA
* * *
23446522 AACAGATTGAAGCTACGACGGCGAATCTCACTTTCCCGACATTGCAATTCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATT-A
* * * * * * **
23446573 AA-AGATTGAAG-TCACAACGGCAAATCTCA-TTTCCCTAGCAATGCAGTGG
1 AACAGATTGAAGCT-ACAACGGCGAATCTTACTTCCCCGA-CATTGCAATTA
* * *
23446622 AACA-AGTTGAAGCTACGATGGCGAATCTCACTTCCCC-AGCATTGCAATTCA
1 AACAGA-TTGAAGCTACAACGGCGAATCTTACTTCCCCGA-CATTGCAATT-A
* * * * * *** * * **
23446673 AA-AGATTAAAGCCACCAA-GGCAAATCTTACTTTCCAGATGGTACAGTGG
1 AACAGATTGAAGCTA-CAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * *
23446722 AATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCGATTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * * * ****
23446772 AAAAGATTGAAGCCACAACGGCGAATCTTAC-TCCCCCAGTAGTGCAGCGG
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGA-CATTGCAATTA
* * * ** *
23446822 AACAGATTGAAGCTACAACAGCGAATTTTGCTTCCTTGACATTGCAATCA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
* * * *
23446872 AATAGATTGAAGCTACAACGGCGAATCTTACTTCCTCGACATTGTAGTTA
1 AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
23446922 AACAGATT
1 AACAGATT
23446930 AGAGATGACA
Statistics
Matches: 1059, Mismatches: 340, Indels: 116
0.70 0.22 0.08
Matches are distributed among these distances:
48 3 0.00
49 94 0.09
50 898 0.85
51 63 0.06
52 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
AACAGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTA
Found at i:23445599 original size:100 final size:100
Alignment explanation
Indices: 23445473--23446459 Score: 1034
Period size: 100 Copynumber: 9.9 Consensus size: 100
23445463 ATTGCAATTA
* *
23445473 AACAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCTA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * ** *
23445538 CAACAGCGAATCTAACCTCCCTGGTGATGCAGCGG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* * * *
23445573 AACAGATCGAAGCTACGACGGTGAATCTCACTTCCCCGACATTGCAATTCAAAATATTGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* ** * *
23445638 CAATGGTAAATCTTACTT-CCTAGGCGATGCAGGGG
66 CAACGGCGAATCTTATTTCCCT-GGCGATGCAGCGG
* * * *
23445673 AGCAGATTGAAGCTACAACAGCAAATCTCACTTCCCCGACATTGCAATTCAAAAGATCGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* **
23445738 CAACGGTGAATCTTATTT-CCTAGGC-AGTGCAGTTG
66 CAACGGCGAATCTTATTTCCCT-GGCGA-TGCAGCGG
* * * ** * * * *
23445773 AACAGATTGAAGCTACAACAGTGGATCTTGCTTCCTCGACATTGTAATTTAAAAGATCGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * * *
23445838 CAACAGTGAATCTTATTTCCCAGGCGATGCAGCAG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* * * * * *
23445873 AATAGATTGAAGCTACAACGGCGAATCTCACTTCCCAGACATTGTAGTTTAAAAGATCGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * *
23445938 CAACGGTGAATCGTATTTCCCAGGCGATGCAGCGG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* * * *
23445973 AATAGATTGAAGCTACGACGGCGAATCTCACTTCCTCGACATTGCAATTTAAAAGATTGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * *
23446038 CAATGGCGAATCTTATTTCCCAGGCGCTGCAGCGG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* * * * * *
23446073 AACAGATTGAAGCTACGACGGTGAATCTCACTTTCTCGACATTGTAATTCAAAAGATTGAAGTCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * *
23446138 CAACGGCAAATCTCATTTCCCTAGCGATGCAGCGG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* * *
23446173 AACAGATTGAAGCTACAATGGCGAATCTCACTTCCCCAACATTACAATTCAAAAGATTGAAGCCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * * * * *
23446238 CCAA-GGCGAATCTTACCTT-CCAGACGGTACAGTGG
66 -CAACGGCGAATCTTA-TTTCCCTGGCGATGCAGCGG
* * ** * *
23446273 AACAGATTGAAGCTACAACGGCAAATTTTGCTTCCCCGACATTGCGATTAAAAAGATTGAA-CCA
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
* * * * *
23446337 CAACGGCGAATCTTACTCCCCCGGCGGTGCAGCAG
66 CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
* ** * * ** * *
23446372 AACAGATTGAAGCTACTACAACGAATTTTACTTCCTTGACATTGCAATT-AAACAAATTGAAGCT
1 AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAA-AGATTGAAGCC
* * *
23446436 ACGACGGCGAATCTCACTTCCCTG
65 ACAACGGCGAATCTTATTTCCCTG
23446460 ACATTGCAAT
Statistics
Matches: 758, Mismatches: 119, Indels: 20
0.85 0.13 0.02
Matches are distributed among these distances:
98 8 0.01
99 77 0.10
100 665 0.88
101 8 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (100 bp):
AACAGATTGAAGCTACAACGGCGAATCTCACTTCCCCGACATTGCAATTCAAAAGATTGAAGCCA
CAACGGCGAATCTTATTTCCCTGGCGATGCAGCGG
Found at i:23448708 original size:12 final size:10
Alignment explanation
Indices: 23448681--23448711 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
23448671 TTTTTTAAAC
23448681 TTATATATTT
1 TTATATATTT
23448691 TTATATATTT
1 TTATATATTT
*
23448701 TTACATATTT
1 TTATATATTT
23448711 T
1 T
23448712 ACCACTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:23448976 original size:18 final size:17
Alignment explanation
Indices: 23448949--23448987 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
23448939 TGCTTTAATT
* *
23448949 TTTTATTTGTTTATTTAC
1 TTTTACTTGTTGATTT-C
23448967 TTTTACTTGTTGATTTC
1 TTTTACTTGTTGATTTC
23448984 TTTT
1 TTTT
23448988 CATTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.72
Consensus pattern (17 bp):
TTTTACTTGTTGATTTC
Found at i:23449298 original size:109 final size:109
Alignment explanation
Indices: 23449102--23449405 Score: 549
Period size: 109 Copynumber: 2.8 Consensus size: 109
23449092 AACGAAAATT
* * *
23449102 TTTTCAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
23449167 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
66 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
23449211 TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
23449276 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
66 CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
*
23449320 TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTT
1 TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
23449385 CGA-TT-TCTCGTTTAACCAAAT
66 CGATTTCTCTCGTTCAACCAAAT
23449406 TGCCAAATAT
Statistics
Matches: 190, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
107 15 0.08
108 2 0.01
109 173 0.91
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTCTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
Found at i:23449820 original size:35 final size:35
Alignment explanation
Indices: 23449774--23449925 Score: 180
Period size: 35 Copynumber: 4.3 Consensus size: 35
23449764 CACTCTCTGT
23449774 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
**
23449809 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * **
23449844 TTGCTGTGTTTCAGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * * * *
23449879 TTGCTGTGTTTTGGAGGGAATGGCT-TGTGTGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCT-TATGAGCA
23449914 TCTGGTGTGTTT
1 T-TGGTGTGTTT
23449926 TGGTTGGACT
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
34 1 0.01
35 93 0.90
36 9 0.09
ACGTcount: A:0.14, C:0.13, G:0.33, T:0.39
Consensus pattern (35 bp):
TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
Found at i:23454529 original size:32 final size:32
Alignment explanation
Indices: 23454455--23454563 Score: 114
Period size: 32 Copynumber: 3.4 Consensus size: 32
23454445 TGGTTCTATG
* * *
23454455 AAATGATAACAAATATCAGCTTTTCATTTTGTG
1 AAATGATAACAAATATCAAC-TTTAATTTTGTA
* *
23454488 AATTTATAACAAATTAT-AACTTTAATTTTGTA
1 AAATGATAACAAA-TATCAACTTTAATTTTGTA
* *
23454520 AAATGATAACAAATATCAA-TTAACATTTTGTT
1 AAATGATAACAAATATCAACTTTA-ATTTTGTA
23454552 AAATGATAACAA
1 AAATGATAACAA
23454564 TATTCCTCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
31 6 0.09
32 42 0.66
33 13 0.20
34 3 0.05
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (32 bp):
AAATGATAACAAATATCAACTTTAATTTTGTA
Found at i:23456900 original size:18 final size:17
Alignment explanation
Indices: 23456858--23456898 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
23456848 GAAAATATTA
23456858 ATAAAAATAGAATTTAG
1 ATAAAAATAGAATTTAG
*
23456875 ATAGAAATAGAATTTTAG
1 ATAAAAATAGAA-TTTAG
23456893 -TAAAAA
1 ATAAAAA
23456899 ATTTTAAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
ATAAAAATAGAATTTAG
Found at i:23456927 original size:11 final size:11
Alignment explanation
Indices: 23456905--23456958 Score: 56
Period size: 11 Copynumber: 4.8 Consensus size: 11
23456895 AAAAATTTTA
23456905 AGAGAGAATTTG
1 AGAGA-AATTTG
23456917 AGAGAAATTTG
1 AGAGAAATTTG
* *
23456928 AAAGAATTTTG
1 AGAGAAATTTG
23456939 AGAG-AATGTTG
1 AGAGAAAT-TTG
*
23456950 TGAGAAATT
1 AGAGAAATT
23456959 AGTAGGGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
10 2 0.06
11 25 0.71
12 8 0.23
ACGTcount: A:0.43, C:0.00, G:0.28, T:0.30
Consensus pattern (11 bp):
AGAGAAATTTG
Found at i:23458236 original size:35 final size:35
Alignment explanation
Indices: 23458190--23458256 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
23458180 TCTTTGTGTG
* *
23458190 AATGGTGGAAAAGAAGTTACAGATATAGGTATGTC
1 AATGGTAGAAAAGAAGTTACAAATATAGGTATGTC
23458225 AATGGTAGAAAAGAAGTTACAAATATAGGTAT
1 AATGGTAGAAAAGAAGTTACAAATATAGGTAT
23458257 TTTCTGAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.45, C:0.04, G:0.25, T:0.25
Consensus pattern (35 bp):
AATGGTAGAAAAGAAGTTACAAATATAGGTATGTC
Found at i:23459866 original size:5 final size:5
Alignment explanation
Indices: 23459825--23459863 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
23459815 CAAGAACCCA
*
23459825 AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCC AGGC
1 AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGC
23459864 CAGACATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.23, G:0.41, T:0.15
Consensus pattern (5 bp):
AGGCT
Found at i:23470011 original size:12 final size:12
Alignment explanation
Indices: 23469994--23470031 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
23469984 TGCGAAGCCA
23469994 CACATGAGATCG
1 CACATGAGATCG
23470006 CACATGAGATCG
1 CACATGAGATCG
* *
23470018 CATATGAGACCG
1 CACATGAGATCG
23470030 CA
1 CA
23470032 TAAACACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (12 bp):
CACATGAGATCG
Found at i:23474286 original size:21 final size:21
Alignment explanation
Indices: 23474260--23474300 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23474250 ATCTGCTCAA
* *
23474260 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
23474281 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
23474301 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:23493186 original size:46 final size:46
Alignment explanation
Indices: 23493113--23493297 Score: 271
Period size: 46 Copynumber: 4.0 Consensus size: 46
23493103 ACAAGGCTAT
* *
23493113 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGATTTTCTTCACCGAAATACCATACCTACTTTTCAC
* * * *
23493159 AACTCAGCATGGTTTTCTTTACCGAAATACCATACCTACTTTTTAC
1 AACTCAGTATGATTTTCTTCACCGAAATACCATACCTACTTTTCAC
* *
23493205 AACTCAGTATGATTTTCTTTACCGAAATATCATACCTACTTTTCAC
1 AACTCAGTATGATTTTCTTCACCGAAATACCATACCTACTTTTCAC
* * *
23493251 AACTCAGTATGATTTTCTTCACTGGAATACCATACCTACGTTTCAC
1 AACTCAGTATGATTTTCTTCACCGAAATACCATACCTACTTTTCAC
23493297 A
1 A
23493298 CTTTTCCGTG
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGATTTTCTTCACCGAAATACCATACCTACTTTTCAC
Found at i:23494572 original size:16 final size:17
Alignment explanation
Indices: 23494526--23494573 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
23494516 AAATTCTTTT
23494526 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
23494543 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
23494560 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
23494574 TTCTAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:23506243 original size:6 final size:6
Alignment explanation
Indices: 23506232--23506270 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
23506222 AGTAGATGAT
23506232 GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCT
1 GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCTGAG GCT
23506271 AATTTTAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.18, G:0.49, T:0.18
Consensus pattern (6 bp):
GCTGAG
Found at i:23514175 original size:481 final size:481
Alignment explanation
Indices: 23513273--23514234 Score: 1915
Period size: 481 Copynumber: 2.0 Consensus size: 481
23513263 TCGTCCATTT
23513273 GGCGCATCACACTATTATCGAGGTACAAGTTTTAATTCTACTTTCAACAATTTGAAACCTTCTTA
1 GGCGCATCACACTATTATCGAGGTACAAGTTTTAATTCTACTTTCAACAATTTGAAACCTTCTTA
*
23513338 TGCTATTAATAAGTTGCTGCCAAAACAAGCTGAGACTAAACCTTTTGAGTGGAAAAGTGGGGCTC
66 TGCTATTAATAAGTTGCTGCCAAAACAAGCTGAGACTAAACCATTTGAGTGGAAAAGTGGGGCTC
23513403 CAACAAAAAATTCTTTTACATCTTTCAAGCAGTTCATTTCTACTAATTTTGCACCAAAACAACAA
131 CAACAAAAAATTCTTTTACATCTTTCAAGCAGTTCATTTCTACTAATTTTGCACCAAAACAACAA
23513468 AGAGCTCGTGACATTGACTGTTTTACGTGTAAAGGGTGTAACACCCCAAATCTGGTCTAAACGTC
196 AGAGCTCGTGACATTGACTGTTTTACGTGTAAAGGGTGTAACACCCCAAATCTGGTCTAAACGTC
23513533 ATGACCGAATCTGGTGATGTCACATTGTAACACCCCTTACCCGTATTCGACGCCGGAATAGGGTA
261 ATGACCGAATCTGGTGATGTCACATTGTAACACCCCTTACCCGTATTCGACGCCGGAATAGGGTA
23513598 CGAGGCATTACTAGAAGACATACATTTGCATATGTATTAAACCGAGTTACAAAATTTCATCCGAA
326 CGAGGCATTACTAGAAGACATACATTTGCATATGTATTAAACCGAGTTACAAAATTTCATCCGAA
23513663 TTAAAACTGTTAAATTATTAAGATGATTTTATAATTCTTTACAGCATATCCTCGAAATATTATAT
391 TTAAAACTGTTAAATTATTAAGATGATTTTATAATTCTTTACAGCATATCCTCGAAATATTATAT
23513728 TCATAACAAATAGGGACTACGAGACC
456 TCATAACAAATAGGGACTACGAGACC
23513754 GGCGCATCACACTATTATCGAGGTACAAGTTTTAATTCTACTTTCAACAATTTGAAACCTTCTTA
1 GGCGCATCACACTATTATCGAGGTACAAGTTTTAATTCTACTTTCAACAATTTGAAACCTTCTTA
23513819 TGCTATTAATAAGTTGCTGCCAAAACAAGCTGAGACTAAACCATTTGAGTGGAAAAGTGGGGCTC
66 TGCTATTAATAAGTTGCTGCCAAAACAAGCTGAGACTAAACCATTTGAGTGGAAAAGTGGGGCTC
23513884 CAACAAAAAATTCTTTTACATCTTTCAAGCAGTTCATTTCTACTAATTTTGCACCAAAACAACAA
131 CAACAAAAAATTCTTTTACATCTTTCAAGCAGTTCATTTCTACTAATTTTGCACCAAAACAACAA
23513949 AGAGCTCGTGACATTGACTGTTTTACGTGTAAAGGGTGTAACACCCCAAATCTGGTCTAAACGTC
196 AGAGCTCGTGACATTGACTGTTTTACGTGTAAAGGGTGTAACACCCCAAATCTGGTCTAAACGTC
23514014 ATGACCGAATCTGGTGATGTCACATTGTAACACCCCTTACCCGTATTCGACGCCGGAATAGGGTA
261 ATGACCGAATCTGGTGATGTCACATTGTAACACCCCTTACCCGTATTCGACGCCGGAATAGGGTA
23514079 CGAGGCATTACTAGAAGACATACATTTGCATATGTATTAAACCGAGTTACAAAATTTCATCCGAA
326 CGAGGCATTACTAGAAGACATACATTTGCATATGTATTAAACCGAGTTACAAAATTTCATCCGAA
23514144 TTAAAACTGTTAAATTATTAAGATGATTTTATAATTCTTTACAGCATATCCTCGAAATATTATAT
391 TTAAAACTGTTAAATTATTAAGATGATTTTATAATTCTTTACAGCATATCCTCGAAATATTATAT
23514209 TCATAACAAATAGGGACTACGAGACC
456 TCATAACAAATAGGGACTACGAGACC
23514235 CGATATTTAC
Statistics
Matches: 480, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
481 480 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (481 bp):
GGCGCATCACACTATTATCGAGGTACAAGTTTTAATTCTACTTTCAACAATTTGAAACCTTCTTA
TGCTATTAATAAGTTGCTGCCAAAACAAGCTGAGACTAAACCATTTGAGTGGAAAAGTGGGGCTC
CAACAAAAAATTCTTTTACATCTTTCAAGCAGTTCATTTCTACTAATTTTGCACCAAAACAACAA
AGAGCTCGTGACATTGACTGTTTTACGTGTAAAGGGTGTAACACCCCAAATCTGGTCTAAACGTC
ATGACCGAATCTGGTGATGTCACATTGTAACACCCCTTACCCGTATTCGACGCCGGAATAGGGTA
CGAGGCATTACTAGAAGACATACATTTGCATATGTATTAAACCGAGTTACAAAATTTCATCCGAA
TTAAAACTGTTAAATTATTAAGATGATTTTATAATTCTTTACAGCATATCCTCGAAATATTATAT
TCATAACAAATAGGGACTACGAGACC
Found at i:23520505 original size:62 final size:62
Alignment explanation
Indices: 23520408--23520531 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
23520398 TGTAATCCTA
*
23520408 GAAATAGGACGACATAAATCTACCAGATTAGAGTCAAATCTAATAGTGGAATCCATAGATCG
1 GAAATAGGACGACATAAATCTACCAGATTAGAGTCAAATCTAATAGTGGAATCCATAAATCG
23520470 GAAATAGGACGACATAAATCTACCAGATTAGAGTCAAATCTAATAGTGGAATCCATAAATCG
1 GAAATAGGACGACATAAATCTACCAGATTAGAGTCAAATCTAATAGTGGAATCCATAAATCG
23520532 AGTTAATGAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.23
Consensus pattern (62 bp):
GAAATAGGACGACATAAATCTACCAGATTAGAGTCAAATCTAATAGTGGAATCCATAAATCG
Found at i:23531049 original size:36 final size:36
Alignment explanation
Indices: 23531002--23531082 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
23530992 GGCCCAAGTT
*
23531002 ACGCCCAAAAGGAGGCCTAAATCAGCGCTCCATATC
1 ACGCCCAAAAGGAGGCCCAAATCAGCGCTCCATATC
* * *
23531038 ACGCCCAAAAGGAGGCCCAAATCTGTGCTCTATATC
1 ACGCCCAAAAGGAGGCCCAAATCAGCGCTCCATATC
23531074 ACGCCCAAA
1 ACGCCCAAA
23531083 TACACGACCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.33, C:0.33, G:0.19, T:0.15
Consensus pattern (36 bp):
ACGCCCAAAAGGAGGCCCAAATCAGCGCTCCATATC
Found at i:23533101 original size:68 final size:69
Alignment explanation
Indices: 23532972--23533106 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 69
23532962 TGATTAAACT
* * *
23532972 TAATCACTTTAATATTAAATTAGCATAATAGTTATCAAGATAAATATTAAATTAAAATTAATATT
1 TAATCACTTTAATATTAAATTAACAAAATAGCTATCAAGATAAATATTAAATTAAAATTAATATT
23533037 AAGA
66 AAGA
* * * * * *
23533041 TAATCAGTTTAATATTAAATTAATAAAATA-CTATTAAGATAAGTATTAAATTTAATTTAATATT
1 TAATCACTTTAATATTAAATTAACAAAATAGCTATCAAGATAAATATTAAATTAAAATTAATATT
23533105 AA
66 AA
23533107 ACTATTAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
68 31 0.54
69 26 0.46
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.40
Consensus pattern (69 bp):
TAATCACTTTAATATTAAATTAACAAAATAGCTATCAAGATAAATATTAAATTAAAATTAATATT
AAGA
Found at i:23537756 original size:21 final size:21
Alignment explanation
Indices: 23537732--23537815 Score: 102
Period size: 21 Copynumber: 4.1 Consensus size: 21
23537722 GTGTTTTATT
*
23537732 TTCTGTTCAACTCTTATGAGT
1 TTCTGTTCAACTCTTATGAGC
*
23537753 TTCTGTTCAACTCTTACGAGC
1 TTCTGTTCAACTCTTATGAGC
*
23537774 TTCTGTTCAGCTCTT-TCGAGC
1 TTCTGTTCAACTCTTAT-GAGC
*
23537795 TTCTGTTCAGCT-TT-TGAGC
1 TTCTGTTCAACTCTTATGAGC
23537814 TT
1 TT
23537816 TTGATTGGAG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
19 6 0.10
20 3 0.05
21 49 0.84
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.45
Consensus pattern (21 bp):
TTCTGTTCAACTCTTATGAGC
Found at i:23539733 original size:21 final size:21
Alignment explanation
Indices: 23539709--23539748 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23539699 AAACTGCCTG
*
23539709 CTATGTCGCGACACGCCCCTA
1 CTATGTCGCAACACGCCCCTA
*
23539730 CTATGTCGCAACAGGCCCC
1 CTATGTCGCAACACGCCCC
23539749 CTTATGGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.42, G:0.20, T:0.17
Consensus pattern (21 bp):
CTATGTCGCAACACGCCCCTA
Found at i:23539988 original size:17 final size:19
Alignment explanation
Indices: 23539956--23539990 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
23539946 GAGACAAATT
23539956 ATTCTTAGGTTTTTATTTC
1 ATTCTTAGGTTTTTATTTC
23539975 ATTCTTA-G-TTTTATTT
1 ATTCTTAGGTTTTTATTT
23539991 TGTTTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.17, C:0.09, G:0.09, T:0.66
Consensus pattern (19 bp):
ATTCTTAGGTTTTTATTTC
Found at i:23541498 original size:28 final size:30
Alignment explanation
Indices: 23541466--23541592 Score: 158
Period size: 30 Copynumber: 4.4 Consensus size: 30
23541456 TTTTATTTAT
23541466 TTAGGGTTTAAG-GTTTTAGAA-AAA-TAAA
1 TTAGGGTTTAAGTGTTTTA-AATAAATTAAA
23541494 TTAGGGTTTAGAG-GTTTTAAA-AAA-TAAA
1 TTAGGGTTTA-AGTGTTTTAAATAAATTAAA
* *
23541522 TTAGGGTTTATGTTTTTTAAATAAATTAAA
1 TTAGGGTTTAAGTGTTTTAAATAAATTAAA
* *
23541552 TTAGGGTTTATGTTTTTTAAATAAATTAAA
1 TTAGGGTTTAAGTGTTTTAAATAAATTAAA
23541582 TTAGGGTTTAA
1 TTAGGGTTTAA
23541593 AGATTTTTAA
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.01
28 36 0.39
29 11 0.12
30 44 0.48
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (30 bp):
TTAGGGTTTAAGTGTTTTAAATAAATTAAA
Found at i:23541887 original size:125 final size:126
Alignment explanation
Indices: 23541707--23542380 Score: 930
Period size: 125 Copynumber: 5.4 Consensus size: 126
23541697 TTTTTCAGTG
* *
23541707 AGCAAAAGTACT-AAAAAGAGCTCCCAGCTGGACGCTATTTTTCTACAGTAGTTTCTGAAAAAAT
1 AGCAAAAGTACTGAAAAA-AGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAAT
* * * ** * *
23541771 AATTTTGAGAAGATGATTCTAAAAAAATAAGGTAAAAAACATTTCAAGAAAGATGCACTGTC
65 AATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
* * * *
23541833 AGCAAAAGTACTGAAAAAAGCTCTCACTTGGATGCTC-TTTTCTATAGTAGTTTCTGAAAAAATA
1 AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATA
* * * *
23541897 ATTTTGGGAAGATAGTTTTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTTTC
66 ATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
* * *
23541958 AGCAAAAGTA-TCGAAAAAAGCTCCCACCTGGACACTCTTTTTCTACAATAATTTCTGAAAAAAA
1 AGCAAAAGTACT-GAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTG-AAAAAA
* *
23542022 TAA--TTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAATGCTTCAAGCAGGATGCACTGTT
64 TAATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
23542083 AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTG-AAAAATA
1 AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATA
* * *
23542147 ATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAAAGCTTCAAGCAGGATGCACTTTT
66 ATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
23542208 AGCAAAAGTACTAAAAAAAGCTCCCACCTAGATGCTCTTTTTCTATAGTAGTTTTTGAAAAAATA
1 AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATA
* *
23542273 ATTTTGAGAAGATGGTTCT-AAATAAATAGGGTCAAAAACGCTTCAAGCAGGATGCATTGTC
66 ATTTTGAGAAGATGGTTCTGAAA-AAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
23542334 AGCAAAAGTACTAAAAAAATCTCCCACCTAGAAGCTTTTTTTCTACA
1 AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACA
23542381 ATACATCCTA
Statistics
Matches: 490, Mismatches: 49, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
123 8 0.02
124 1 0.00
125 322 0.66
126 145 0.30
127 14 0.03
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
AGCAAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATA
ATTTTGAGAAGATGGTTCTGAAAAAATAGGGTAAAAAACGCTTCAAGCAGGATGCACTGTC
Found at i:23542480 original size:25 final size:25
Alignment explanation
Indices: 23542451--23542521 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
23542441 TTACAGCAAG
*
23542451 AGAAATT-AGAGAAGTTTAGAAGAAT
1 AGAAATTGA-AGAAGTTCAGAAGAAT
* *
23542476 AGAAATTGAAAAAGTTCAGAAGAGT
1 AGAAATTGAAGAAGTTCAGAAGAAT
* *
23542501 ATAAATTGAAGAAGTTGAGAA
1 AGAAATTGAAGAAGTTCAGAA
23542522 TGTATAAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.52, C:0.01, G:0.24, T:0.23
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAGAAGAAT
Found at i:23543843 original size:15 final size:16
Alignment explanation
Indices: 23543817--23543848 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
23543807 TTTTGAATAT
23543817 TATTGTTATTATTTAA
1 TATTGTTATTATTTAA
23543833 TATTG-TATTATTTAA
1 TATTGTTATTATTTAA
23543848 T
1 T
23543849 GTACTCATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
TATTGTTATTATTTAA
Found at i:23544542 original size:17 final size:18
Alignment explanation
Indices: 23544522--23544555 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23544512 TAATCACCAC
*
23544522 TAATATT-ATTTTGTTTG
1 TAATATTCAATTTGTTTG
23544539 TAATATTCAATTTGTTT
1 TAATATTCAATTTGTTT
23544556 TTGAATGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (18 bp):
TAATATTCAATTTGTTTG
Found at i:23546585 original size:27 final size:27
Alignment explanation
Indices: 23546555--23546699 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
23546545 GGGTATAATA
* * *
23546555 GTCATTTTACCCCATGAGAGTTTTTCG
1 GTCATTTTACCCAATGAGGGTATTTCG
* *
23546582 GTCATTTTACCCAATGGGGGTATTTCA
1 GTCATTTTACCCAATGAGGGTATTTCG
* * *
23546609 GTTATTCTACCCAATGGGGGTATTTCG
1 GTCATTTTACCCAATGAGGGTATTTCG
* *
23546636 GTTATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCAATGAGGGTATTTCG
* * *
23546663 GTCATTTTACTCTATGA-GGTATTTTG
1 GTCATTTTACCCAATGAGGGTATTTCG
*
23546689 GTTATTTTACC
1 GTCATTTTACC
23546700 TATTTTGAGG
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 17 0.17
27 85 0.83
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCAATGAGGGTATTTCG
Found at i:23560512 original size:17 final size:17
Alignment explanation
Indices: 23560490--23560523 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23560480 TAATCCCAAA
*
23560490 CAAAATCAATAAAAACT
1 CAAAATCAAAAAAAACT
*
23560507 CAAAATTAAAAAAAACT
1 CAAAATCAAAAAAAACT
23560524 GCAATGTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.18
Consensus pattern (17 bp):
CAAAATCAAAAAAAACT
Found at i:23560907 original size:12 final size:12
Alignment explanation
Indices: 23560890--23560925 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
23560880 AATAAGTCTG
23560890 AAAAATAAAATA
1 AAAAATAAAATA
23560902 AAAAATAACAAT-
1 AAAAATAA-AATA
23560914 AAAAATAAAATA
1 AAAAATAAAATA
23560926 TAGTTCGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAATAAAATA
Done.