Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 79 of 185
Found at i:24778043 original size:29 final size:29
Alignment explanation
Indices: 24778011--24778073 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
24778001 TTTTCTTTTC
24778011 TTTTTTGATCATTTTTA-TTTTTTGAAATA
1 TTTTTTGAT-ATTTTTATTTTTTTGAAATA
*
24778040 TTTTTTGATTTTTTTATTTTTTTGAAATA
1 TTTTTTGATATTTTTATTTTTTTGAAATA
24778069 TTTTT
1 TTTTT
24778074 GATTGGATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.71
Consensus pattern (29 bp):
TTTTTTGATATTTTTATTTTTTTGAAATA
Found at i:24780022 original size:16 final size:16
Alignment explanation
Indices: 24779997--24780027 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24779987 TTATGATGAA
24779997 AATGCAATGCAATCAT
1 AATGCAATGCAATCAT
*
24780013 AATGCCATGCAATCA
1 AATGCAATGCAATCA
24780028 AAACAACACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (16 bp):
AATGCAATGCAATCAT
Found at i:24781927 original size:3 final size:3
Alignment explanation
Indices: 24781919--24781965 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
24781909 ATAACCAAAT
* *
24781919 ATA ATA AT- ATCA ATA ATA ATA AGA GTA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
24781965 A
1 A
24781966 ATTAATTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:24781937 original size:15 final size:13
Alignment explanation
Indices: 24781919--24781965 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 13
24781909 ATAACCAAAT
24781919 ATAATAATATCAATA
1 ATAATAA-AT-AATA
24781934 ATAATAAGAGTAATA
1 ATAATAA-A-TAATA
24781949 ATAATAAATAATA
1 ATAATAAATAATA
24781962 ATAA
1 ATAA
24781966 ATTAATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 9 0.30
14 1 0.03
15 19 0.63
16 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (13 bp):
ATAATAAATAATA
Found at i:24783184 original size:20 final size:21
Alignment explanation
Indices: 24783144--24783195 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 21
24783134 CACAATAAAT
24783144 AAATATAT-AAAA-TAGAAAA
1 AAATATATAAAAATTAGAAAA
24783163 AAATATATAAAAATTAGGAAAA
1 AAATATATAAAAATTA-GAAAA
24783185 AAATATATAAA
1 AAATATATAAA
24783196 TTATAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 8 0.27
20 4 0.13
21 2 0.07
22 16 0.53
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (21 bp):
AAATATATAAAAATTAGAAAA
Found at i:24783329 original size:11 final size:11
Alignment explanation
Indices: 24783281--24783339 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
24783271 ATATTTTTAC
24783281 AAAAAAATGTA
1 AAAAAAATGTA
*
24783292 AAAGAAATTGT-
1 AAA-AAAATGTA
* *
24783303 -AAAAATTATA
1 AAAAAAATGTA
*
24783313 ATAAAAATGTA
1 AAAAAAATGTA
*
24783324 AAAAAAATTTA
1 AAAAAAATGTA
24783335 AAAAA
1 AAAAA
24783340 TTTAAAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
9 6 0.16
10 2 0.05
11 24 0.63
12 6 0.16
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (11 bp):
AAAAAAATGTA
Found at i:24783384 original size:15 final size:16
Alignment explanation
Indices: 24783355--24783401 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
24783345 AAATATATTT
* *
24783355 TTATCTAATTATAAAA
1 TTATATAATTCTAAAA
24783371 -TATATAATTCTAAAA
1 TTATATAATTCTAAAA
* *
24783386 TTCTAAAATTCTAAAA
1 TTATATAATTCTAAAA
24783402 AGGTATTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (16 bp):
TTATATAATTCTAAAA
Found at i:24783389 original size:8 final size:8
Alignment explanation
Indices: 24783376--24783401 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
24783366 TAAAATATAT
24783376 AATTCTAA
1 AATTCTAA
24783384 AATTCTAA
1 AATTCTAA
24783392 AATTCTAA
1 AATTCTAA
24783400 AA
1 AA
24783402 AGGTATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTCTAA
Found at i:24785050 original size:30 final size:27
Alignment explanation
Indices: 24785004--24785058 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 27
24784994 TATAGAGTTG
*
24785004 CCACAGAGGCTTTCCTTTGACAGAGATCA
1 CCACAAAGGCTTTCCTTT--CAGAGATCA
24785033 CCACAAAGGCGTTTCCTTTCAGAGAT
1 CCACAAAGGC-TTTCCTTTCAGAGAT
24785059 TTGCCATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 7 0.29
29 9 0.38
30 8 0.33
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (27 bp):
CCACAAAGGCTTTCCTTTCAGAGATCA
Found at i:24786706 original size:25 final size:25
Alignment explanation
Indices: 24786678--24786747 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
24786668 TGGCTCTCAT
*
24786678 GAGCTTCCCGTTATATGGTTCTTGC
1 GAGCTTCCCGTTATATGGCTCTTGC
* **
24786703 GAGCTTTCCGATTA-ATGGCTCTTTT
1 GAGCTTCCCG-TTATATGGCTCTTGC
*
24786728 AAGCTTCCCGTT-TATGGCTC
1 GAGCTTCCCGTTATATGGCTC
24786748 CTCGGAGCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
24 9 0.24
25 25 0.68
26 3 0.08
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.40
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCTTGC
Found at i:24786805 original size:25 final size:25
Alignment explanation
Indices: 24786742--24786808 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
24786732 TTCCCGTTTA
* * *
24786742 TGGCTCCTCGGAGCTTTTCAATAAT
1 TGGCTCTTAGGAGCTTCTCAATAAT
*
24786767 TGGCTTTTAGGAGCTTCTCAATAAT
1 TGGCTCTTAGGAGCTTCTCAATAAT
24786792 TGGCTCTT-GTGAGCTTC
1 TGGCTCTTAG-GAGCTTC
24786809 CTGGTTAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (25 bp):
TGGCTCTTAGGAGCTTCTCAATAAT
Found at i:24786926 original size:25 final size:25
Alignment explanation
Indices: 24786801--24786962 Score: 104
Period size: 24 Copynumber: 6.6 Consensus size: 25
24786791 TTGGCTCTTG
*
24786801 TGAGCTTCCTGGTTA-ATGGCTCTTCA
1 TGAGCTTCCT-GTTATATGGCTC-ACA
* *
24786827 -GAGCTT-CTAGATAT-TGGCTCACT
1 TGAGCTTCCT-GTTATATGGCTCACA
* * **
24786850 TGAACTTCCTGATAT-TGGCTTGCA
1 TGAGCTTCCTGTTATATGGCTCACA
* * * *
24786874 TGAGCTTCCTG-AATTTGGCTCTCT
1 TGAGCTTCCTGTTATATGGCTCACA
*
24786898 TGAGCTTCTTGTTATATGGCTCACA
1 TGAGCTTCCTGTTATATGGCTCACA
*
24786923 TGAGCTTCCCGTTATATGGCTCGA-A
1 TGAGCTTCCTGTTATATGGCTC-ACA
* *
24786948 AGAGCTTCCCGTTAT
1 TGAGCTTCCTGTTAT
24786963 GTGCTCGTAT
Statistics
Matches: 109, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
23 3 0.03
24 53 0.49
25 52 0.48
26 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (25 bp):
TGAGCTTCCTGTTATATGGCTCACA
Found at i:24786929 original size:49 final size:50
Alignment explanation
Indices: 24786790--24786931 Score: 127
Period size: 48 Copynumber: 2.9 Consensus size: 50
24786780 CTTCTCAATA
* *
24786790 ATTGGCTCT-TGTGAGCTTCCTGGTTA-ATGGCTCTTCA-GAGCTT-CTAGAT
1 ATTGGCTCTCT-TGAGCTT-CTTGTTATATGGCTC-ACATGAGCTTCCTAGAT
* * * * **
24786839 ATTGGCTCACTTGAACTTCCTGATAT-TGGCTTGCATGAGCTTCCT-GA-
1 ATTGGCTCTCTTGAGCTTCTTGTTATATGGCTCACATGAGCTTCCTAGAT
24786886 ATTTGGCTCTCTTGAGCTTCTTGTTATATGGCTCACATGAGCTTCC
1 A-TTGGCTCTCTTGAGCTTCTTGTTATATGGCTCACATGAGCTTCC
24786932 CGTTATATGG
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
47 3 0.04
48 38 0.51
49 32 0.43
50 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.39
Consensus pattern (50 bp):
ATTGGCTCTCTTGAGCTTCTTGTTATATGGCTCACATGAGCTTCCTAGAT
Found at i:24799845 original size:27 final size:27
Alignment explanation
Indices: 24799807--24799940 Score: 119
Period size: 27 Copynumber: 5.0 Consensus size: 27
24799797 TCGCAATTGG
*
24799807 CGGACTGGCTCGCGAACAGGAGACTGA
1 CGGACTGCCTCGCGAACAGGAGACTGA
*
24799834 CGGACTGTCTCGCGAACA-GAGGACTGA
1 CGGACTGCCTCGCGAACAGGA-GACTGA
* * *
24799861 CGGATTGCCTCGCGAATAGGTGACTGA
1 CGGACTGCCTCGCGAACAGGAGACTGA
* * * * *
24799888 TGGATTGCCTTGCAAACAGGGGACT-A
1 CGGACTGCCTCGCGAACAGGAGACTGA
* * *
24799914 GCGGACTGCCTTGTGAACAGGGGACTG
1 -CGGACTGCCTCGCGAACAGGAGACTG
24799941 GTGGATTGTC
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.03
27 85 0.96
28 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (27 bp):
CGGACTGCCTCGCGAACAGGAGACTGA
Found at i:24799906 original size:54 final size:54
Alignment explanation
Indices: 24799806--24799973 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 54
24799796 CTCGCAATTG
* * * * *
24799806 GCGGACTGGCTCGCGAACAGGAGACTGACGGACTGTCTCGCGAACAGAGGACT-
1 GCGGACTGCCTCGCGAACAGGAGACTGATGGATTGCCTCGCAAACAGAGGACTA
* * * * *
24799859 GACGGATTGCCTCGCGAATAGGTGACTGATGGATTGCCTTGCAAACAGGGGACTA
1 G-CGGACTGCCTCGCGAACAGGAGACTGATGGATTGCCTCGCAAACAGAGGACTA
* * * * * ** *
24799914 GCGGACTGCCTTGTGAACAGGGGACTGGTGGATTGTCTCATAAACAGATGACTA
1 GCGGACTGCCTCGCGAACAGGAGACTGATGGATTGCCTCGCAAACAGAGGACTA
*
24799968 ACGGAC
1 GCGGAC
24799974 AACTGAGAGC
Statistics
Matches: 90, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
53 1 0.01
54 88 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.33, T:0.19
Consensus pattern (54 bp):
GCGGACTGCCTCGCGAACAGGAGACTGATGGATTGCCTCGCAAACAGAGGACTA
Found at i:24802844 original size:26 final size:26
Alignment explanation
Indices: 24802806--24802856 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24802796 ATAACTTACA
*
24802806 ACTTAACTACTGCAGTAGTTCATTCT
1 ACTTAACTACTGCAGCAGTTCATTCT
* *
24802832 ACTTAACTGCTGCTGCAGTTCATTC
1 ACTTAACTACTGCAGCAGTTCATTC
24802857 CTTAACATGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (26 bp):
ACTTAACTACTGCAGCAGTTCATTCT
Found at i:24803114 original size:20 final size:19
Alignment explanation
Indices: 24803089--24803127 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
24803079 CTTGGTGTGG
24803089 GAGAATATCGTAACCTCTT
1 GAGAATATCGTAACCTCTT
24803108 NGAGAATATCGTAACCTCTT
1 -GAGAATATCGTAACCTCTT
24803128 TCCCTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.31
Consensus pattern (19 bp):
GAGAATATCGTAACCTCTT
Found at i:24809357 original size:17 final size:17
Alignment explanation
Indices: 24809327--24809359 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24809317 ATAGAAACAA
24809327 ACAAACAAACACCAAAC
1 ACAAACAAACACCAAAC
24809344 ACAAGACAAA-ACCAAA
1 ACAA-ACAAACACCAAA
24809360 ACTCTCTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.67, C:0.30, G:0.03, T:0.00
Consensus pattern (17 bp):
ACAAACAAACACCAAAC
Found at i:24818004 original size:2 final size:2
Alignment explanation
Indices: 24817997--24818023 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24817987 AGCATGAATA
24817997 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
24818024 AAGTGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:24822618 original size:33 final size:33
Alignment explanation
Indices: 24822576--24822641 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
24822566 GAGCAAGCAG
24822576 ACAAAATGTCAGTACAGTATCAGATATATAGTC
1 ACAAAATGTCAGTACAGTATCAGATATATAGTC
24822609 ACAAAATGTCAGTACAGTATCAGATATATAGTC
1 ACAAAATGTCAGTACAGTATCAGATATATAGTC
24822642 TGGGCTTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
ACAAAATGTCAGTACAGTATCAGATATATAGTC
Found at i:24828191 original size:13 final size:13
Alignment explanation
Indices: 24828173--24828197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24828163 AATGCTAGGT
24828173 TGGGCACAAAAAG
1 TGGGCACAAAAAG
24828186 TGGGCACAAAAA
1 TGGGCACAAAAA
24828198 CTGAGACAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08
Consensus pattern (13 bp):
TGGGCACAAAAAG
Found at i:24829328 original size:14 final size:14
Alignment explanation
Indices: 24829293--24829349 Score: 59
Period size: 13 Copynumber: 4.3 Consensus size: 14
24829283 TATACAACGC
*
24829293 ATTAATTAAA-AAT
1 ATTATTTAAATAAT
24829306 ATT-TTTAAATAAT
1 ATTATTTAAATAAT
24829319 -TTAATTTAAA-AAT
1 ATT-ATTTAAATAAT
*
24829332 ATTATTTTAATAAT
1 ATTATTTAAATAAT
24829346 ATTA
1 ATTA
24829350 CANATAACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
12 7 0.19
13 15 0.41
14 15 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATTTAAATAAT
Found at i:24829333 original size:26 final size:26
Alignment explanation
Indices: 24829294--24829345 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24829284 ATACAACGCA
24829294 TTAATTAAAAATATT-TTTAAATAAT
1 TTAATTAAAAATATTATTTAAATAAT
*
24829319 TTAATTTAAAAATATTATTTTAATAAT
1 TTAA-TTAAAAATATTATTTAAATAAT
24829346 ATTACANATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.17
26 11 0.46
27 9 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
TTAATTAAAAATATTATTTAAATAAT
Found at i:24829475 original size:39 final size:41
Alignment explanation
Indices: 24829430--24829535 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 41
24829420 TTTCCTTATG
*
24829430 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACGCCTCTATTCCATTCAACCAAACACAAGAATTAC
*
24829470 C-ATTACGCCTCTATTCCATTCCATTCAACCAAACAGAAGAATTAC
1 CTATTACGCCTC---T--ATTCCATTCAACCAAACACAAGAATTAC
24829515 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
24829536 ACACATCTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
39 9 0.16
40 1 0.02
41 8 0.14
42 1 0.02
43 1 0.02
44 23 0.40
45 4 0.07
46 10 0.18
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (41 bp):
CTATTACGCCTCTATTCCATTCAACCAAACACAAGAATTAC
Found at i:24829510 original size:44 final size:46
Alignment explanation
Indices: 24829443--24829535 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 46
24829433 TTACACCTCT
24829443 ATTCCATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC
*
24829487 ATTCCATTCAACCAAACAGAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC
24829533 ATT
1 ATT
24829536 ACACATCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 23 0.50
45 4 0.09
46 19 0.41
ACGTcount: A:0.35, C:0.31, G:0.05, T:0.28
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACCTATTACGCCTCTATTCC
Found at i:24829544 original size:16 final size:16
Alignment explanation
Indices: 24829517--24829586 Score: 122
Period size: 16 Copynumber: 4.4 Consensus size: 16
24829507 AGAATTACCT
*
24829517 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
24829533 ATTACACATCTATTCC
1 ATTACACCTCTATTCC
24829549 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
24829565 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
24829581 ATTACA
1 ATTACA
24829587 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.27, C:0.34, G:0.01, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:24832332 original size:27 final size:27
Alignment explanation
Indices: 24832274--24832335 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
24832264 AAGTGTTTGC
* * *
24832274 AATATAGTCTACCTATAGTAGTCTTAG
1 AATATACTATACCTATAGCAGTCTTAG
*
24832301 TATATACTATACCTATAGCAGT-TTCAG
1 AATATACTATACCTATAGCAGTCTT-AG
24832328 AATATACT
1 AATATACT
24832336 TGGTGTACTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (27 bp):
AATATACTATACCTATAGCAGTCTTAG
Found at i:24833921 original size:14 final size:15
Alignment explanation
Indices: 24833902--24833935 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
24833892 ACGATTCAAG
*
24833902 ATTAAACCAATAAC-
1 ATTAAACCAAAAACA
24833916 ATTAAACCAAAAACA
1 ATTAAACCAAAAACA
24833931 ATTAA
1 ATTAA
24833936 TCTCCAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.62, C:0.18, G:0.00, T:0.21
Consensus pattern (15 bp):
ATTAAACCAAAAACA
Found at i:24848528 original size:19 final size:20
Alignment explanation
Indices: 24848496--24848533 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24848486 CGGCGCCGAT
24848496 TCTGTAAGTATTTT-AAAAC
1 TCTGTAAGTATTTTGAAAAC
24848515 TCTGATAAGT-TTTTGAAAA
1 TCTG-TAAGTATTTTGAAAA
24848534 TATGAGTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (20 bp):
TCTGTAAGTATTTTGAAAAC
Found at i:24860226 original size:27 final size:26
Alignment explanation
Indices: 24860196--24860332 Score: 98
Period size: 27 Copynumber: 5.1 Consensus size: 26
24860186 TCGATATCTA
24860196 GACCGAAATACCCTCGAAGGATAAAAT
1 GACCGAAATACCCT-GAAGGATAAAAT
* * * *
24860223 GACCAAAATACCCTTAATGGGTAATAT
1 GACCGAAATACCCTGAA-GGATAAAAT
* *
24860250 GATCGAAATACTCCTGTAGG-TAAGAAT
1 GACCGAAATAC-CCTGAAGGATAA-AAT
* * * *
24860277 -ACTGAAATACCCTCATAAGTTAAAAT
1 GACCGAAATACCCTGA-AGGATAAAAT
* *
24860303 GACCGTAATACTCCTGTAGGATAAAAT
1 GACCGAAATAC-CCTGAAGGATAAAAT
24860330 GAC
1 GAC
24860333 TGTAATGCCC
Statistics
Matches: 83, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
25 3 0.04
26 18 0.22
27 55 0.66
28 7 0.08
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (26 bp):
GACCGAAATACCCTGAAGGATAAAAT
Found at i:24860337 original size:27 final size:27
Alignment explanation
Indices: 24860256--24860386 Score: 108
Period size: 27 Copynumber: 4.9 Consensus size: 27
24860246 ATATGATCGA
* *
24860256 AATACTCCTGTAGG-TAAGAAT-ACTGA
1 AATACCCCTGTAGGTTAA-AATGACTGT
* * *
24860282 AATA-CCCTCATAAGTTAAAATGACCGT
1 AATACCCCT-GTAGGTTAAAATGACTGT
* *
24860309 AATACTCCTGTAGGATAAAATGACTGT
1 AATACCCCTGTAGGTTAAAATGACTGT
* *
24860336 AATGCCCCTGTAGGGTAAAATGA-TCGT
1 AATACCCCTGTAGGTTAAAATGACT-GT
* *
24860363 AATGCCCCTATAGGTTAAAATGAC
1 AATACCCCTGTAGGTTAAAATGAC
24860387 CATAATGCTC
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.04
26 11 0.13
27 67 0.80
28 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATACCCCTGTAGGTTAAAATGACTGT
Found at i:24860365 original size:54 final size:53
Alignment explanation
Indices: 24860217--24860386 Score: 148
Period size: 54 Copynumber: 3.2 Consensus size: 53
24860207 CCTCGAAGGA
** * * *
24860217 TAAAATGACCAAAATACCCTTA-ATGGGTAATATGATCGAAATACTCCTGTAGG
1 TAAAATGACTGAAATACCCTCATA-GGGTAAAATGATCGTAATACTCCTGTAGG
* * *
24860270 TAAGAAT-ACTGAAATACCCTCATAAGTTAAAATGACCGTAATACTCCTGTAGG
1 TAA-AATGACTGAAATACCCTCATAGGGTAAAATGATCGTAATACTCCTGTAGG
* * * * * *
24860323 ATAAAATGACTGTAATGCCC-CTGTAGGGTAAAATGATCGTAATGCCCCTATAGG
1 -TAAAATGACTGAAATACCCTC-ATAGGGTAAAATGATCGTAATACTCCTGTAGG
24860377 TTAAAATGAC
1 -TAAAATGAC
24860387 CATAATGCTC
Statistics
Matches: 94, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 43 0.46
54 51 0.54
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (53 bp):
TAAAATGACTGAAATACCCTCATAGGGTAAAATGATCGTAATACTCCTGTAGG
Found at i:24860392 original size:27 final size:27
Alignment explanation
Indices: 24860286--24860394 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
24860276 TACTGAAATA
* *
24860286 CCCTCATAAGTTAAAATGACCGTAATAC
1 CCCT-ATAGGTTAAAATGACCGTAATGC
* * * *
24860314 TCCTGTAGGATAAAATGACTGTAATGC
1 CCCTATAGGTTAAAATGACCGTAATGC
* * *
24860341 CCCTGTAGGGTAAAATGATCGTAATGC
1 CCCTATAGGTTAAAATGACCGTAATGC
*
24860368 CCCTATAGGTTAAAATGACCATAATGC
1 CCCTATAGGTTAAAATGACCGTAATGC
24860395 TCTGGTGGGT
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
27 64 0.96
28 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (27 bp):
CCCTATAGGTTAAAATGACCGTAATGC
Found at i:24860685 original size:32 final size:33
Alignment explanation
Indices: 24860632--24860814 Score: 146
Period size: 32 Copynumber: 5.7 Consensus size: 33
24860622 GCTGCGATGC
* **
24860632 TACTGATGGCTTTGTATCGATCATAGT-ACCGT
1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT
* *
24860664 TACT-AGTGGCTGTGTGCCGATCAT-TTCACTGT
1 TACTGA-TGGCTGTGTGCCGATCATAGTCACCGT
* ** * *
24860696 TACTGATGGTTGTGTGATGATCATA-TCACTGC
1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT
* *
24860728 TACTGATGGCTTTGTG-CGAATCAT-GTTACCGT
1 TACTGATGGCTGTGTGCCG-ATCATAGTCACCGT
* * *
24860760 TACTGATGGTTGTGTGCCGATCATA-TCACTGC
1 TACTGATGGCTGTGTGCCGATCATAGTCACCGT
* *
24860792 TACTGATGGCTTTGTGCCAATCA
1 TACTGATGGCTGTGTGCCGATCA
24860815 CATTACTGTA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
31 3 0.03
32 114 0.95
33 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (33 bp):
TACTGATGGCTGTGTGCCGATCATAGTCACCGT
Found at i:24860720 original size:64 final size:64
Alignment explanation
Indices: 24860632--24860814 Score: 189
Period size: 64 Copynumber: 2.9 Consensus size: 64
24860622 GCTGCGATGC
*
24860632 TACTGATGGCTT-TGT-ATCGATCATAGT-ACCGTTACT-AGTGGCTGTGTGCCG-ATCAT-TTC
1 TACTGATGG-TTGTGTGAT-GATCATA-TCACCGCTACTGA-TGGCTGTGTG-CGAATCATGTT-
*
24860691 ACTGT
60 ACCGT
* *
24860696 TACTGATGGTTGTGTGATGATCATATCACTGCTACTGATGGCTTTGTGCGAATCATGTTACCGT
1 TACTGATGGTTGTGTGATGATCATATCACCGCTACTGATGGCTGTGTGCGAATCATGTTACCGT
** * * *
24860760 TACTGATGGTTGTGTGCCGATCATATCACTGCTACTGATGGCTTTGTGCCAATCA
1 TACTGATGGTTGTGTGATGATCATATCACCGCTACTGATGGCTGTGTGCGAATCA
24860815 CATTACTGTA
Statistics
Matches: 106, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
63 5 0.05
64 96 0.91
65 5 0.05
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (64 bp):
TACTGATGGTTGTGTGATGATCATATCACCGCTACTGATGGCTGTGTGCGAATCATGTTACCGT
Found at i:24861099 original size:28 final size:28
Alignment explanation
Indices: 24861065--24861131 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
24861055 TAACGGGCAG
24861065 AGGCCCACACTATTTCTATATTGGGCTA
1 AGGCCCACACTATTTCTATATTGGGCTA
*
24861093 AGGCCCACACTATTTCTGTATTGGGCTA
1 AGGCCCACACTATTTCTATATTGGGCTA
24861121 AGGCCCACACT
1 AGGCCCACACT
24861132 GTACTATTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (28 bp):
AGGCCCACACTATTTCTATATTGGGCTA
Found at i:24864027 original size:17 final size:17
Alignment explanation
Indices: 24863986--24864034 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
24863976 TCATTTATAT
*
24863986 ACATATAATATATATAC
1 ACATATAATATATACAC
*
24864003 ACACATAATATATACAC
1 ACATATAATATATACAC
24864020 A-ATTATAATAATATA
1 ACA-TATAAT-ATATA
24864035 AAAAATATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 1 0.04
17 21 0.78
18 5 0.19
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (17 bp):
ACATATAATATATACAC
Found at i:24867487 original size:21 final size:21
Alignment explanation
Indices: 24867454--24867502 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
24867444 ATCATGTTAT
*
24867454 TTAT-TTTTATTTGATTTTG-
1 TTATGTTTTATTTGAATTTGA
24867473 TTATGTTTATATTTGAATTTGAA
1 TTATGTTT-TATTTGAATTTG-A
24867496 TTATGTT
1 TTATGTT
24867503 AGCACCACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 4 0.16
20 3 0.12
21 11 0.44
23 7 0.28
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.65
Consensus pattern (21 bp):
TTATGTTTTATTTGAATTTGA
Found at i:24868480 original size:23 final size:23
Alignment explanation
Indices: 24868454--24868499 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24868444 GAGTGTATAA
*
24868454 ATGTATGCATATGAAT-TATTTTG
1 ATGTATGAAT-TGAATGTATTTTG
*
24868477 ATGTTTGAATTGAATGTATTTTG
1 ATGTATGAATTGAATGTATTTTG
24868500 TTATAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (23 bp):
ATGTATGAATTGAATGTATTTTG
Found at i:24869621 original size:14 final size:14
Alignment explanation
Indices: 24869602--24869635 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
24869592 ATTTTCTTCA
24869602 CTTGAACCCTGCAC
1 CTTGAACCCTGCAC
*
24869616 CTTGAATCCTGCAC
1 CTTGAACCCTGCAC
24869630 CTTGAA
1 CTTGAA
24869636 ACTTAAATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (14 bp):
CTTGAACCCTGCAC
Found at i:24869819 original size:18 final size:19
Alignment explanation
Indices: 24869793--24869830 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
24869783 TTAGAGTCCA
*
24869793 AAATGACATAAAAT-ATTG
1 AAATAACATAAAATAATTG
*
24869811 AAATAACATTAAATAATTG
1 AAATAACATAAAATAATTG
24869830 A
1 A
24869831 TAAAAAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.29
Consensus pattern (19 bp):
AAATAACATAAAATAATTG
Found at i:24873300 original size:3 final size:3
Alignment explanation
Indices: 24873292--24873320 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
24873282 ACAACCTTGA
24873292 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
24873321 AACAAAGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:24877219 original size:43 final size:43
Alignment explanation
Indices: 24877174--24877434 Score: 177
Period size: 43 Copynumber: 6.1 Consensus size: 43
24877164 GGACAGGACG
* * *
24877174 AAGTAATTATACTGGTACACATAGTACATCATTGGATAAACCG
1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
* ** ** ** *
24877217 AAGCAATTATGTTGGCACGTA-AGTGCATCATTGGATGTACCG
1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
* * * ** * *
24877259 AAGAAAATATA-TCG-ACATGTAAGTGCATCATAGGATATACCA
1 AAGTAATTATACTGGCACACAT-AGTGCATCATTGGATAAACCA
* ** * * * **
24877301 AAGCAATTATACTAACACACATAGTGCATTATCGGACAAGTCA
1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
* * * * ***
24877344 AATTAATTATACTAGCACACACAGTGCATCATTGGACAAGGTA
1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
* *
24877387 AAGTAATTATACTGGCACACATAGTGCATCATTGGGTAAATCA
1 AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
24877430 AAGTA
1 AAGTA
24877435 TAAATTGTAC
Statistics
Matches: 168, Mismatches: 46, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
40 3 0.02
41 2 0.01
42 53 0.32
43 106 0.63
44 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (43 bp):
AAGTAATTATACTGGCACACATAGTGCATCATTGGATAAACCA
Found at i:24877252 original size:42 final size:42
Alignment explanation
Indices: 24877200--24877311 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
24877190 ACACATAGTA
* * * *
24877200 CATCATTGGATAAACCGAAGCAATTATGTTGGCACGTAAGTG
1 CATCATTGGATATACCGAAGCAATTATATCGACACGTAAGTG
* * * *
24877242 CATCATTGGATGTACCGAAGAAAATATATCGACATGTAAGTG
1 CATCATTGGATATACCGAAGCAATTATATCGACACGTAAGTG
* *
24877284 CATCATAGGATATACCAAAGCAATTATA
1 CATCATTGGATATACCGAAGCAATTATA
24877312 CTAACACACA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (42 bp):
CATCATTGGATATACCGAAGCAATTATATCGACACGTAAGTG
Found at i:24882094 original size:46 final size:47
Alignment explanation
Indices: 24882031--24882120 Score: 112
Period size: 46 Copynumber: 1.9 Consensus size: 47
24882021 TTTGAATTGT
* *
24882031 GAACTCAAATCTCAAACCATAAATTTCAAATCTCAAAC-TCGAACTC
1 GAACTCAAATCTCAAACCATAAATCTCAAACCTCAAACTTCGAACTC
* * *
24882077 GAACTCGAA-CTCTAAACCTTAAATCTCAAACCTTAAACTTCGAA
1 GAACTCAAATCTC-AAACCATAAATCTCAAACCTCAAACTTCGAA
24882121 ACTTAAACAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 3 0.08
46 29 0.78
47 5 0.14
ACGTcount: A:0.42, C:0.28, G:0.06, T:0.24
Consensus pattern (47 bp):
GAACTCAAATCTCAAACCATAAATCTCAAACCTCAAACTTCGAACTC
Found at i:24884013 original size:14 final size:14
Alignment explanation
Indices: 24883996--24884022 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24883986 AAATTAAAAA
24883996 AAAATATTAGAATT
1 AAAATATTAGAATT
24884010 AAAATATTAGAAT
1 AAAATATTAGAAT
24884023 CACAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAATATTAGAATT
Found at i:24884029 original size:14 final size:14
Alignment explanation
Indices: 24883996--24884029 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
24883986 AAATTAAAAA
*
24883996 AAAATATTAGAATT
1 AAAATATTAGAATC
24884010 AAAATATTAGAATC
1 AAAATATTAGAATC
*
24884024 ACAATA
1 AAAATA
24884030 AAACAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (14 bp):
AAAATATTAGAATC
Found at i:24885016 original size:7 final size:7
Alignment explanation
Indices: 24884975--24885019 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
24884965 TAGTTGAACA
*
24884975 AATTGCA
1 AATTGCT
*
24884982 AATTGCA
1 AATTGCT
24884989 AATTGCT
1 AATTGCT
24884996 AATTGCT
1 AATTGCT
24885003 AATTGCT
1 AATTGCT
24885010 AATTGCT
1 AATTGCT
24885017 AAT
1 AAT
24885020 CGCTTAGCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (7 bp):
AATTGCT
Found at i:24886389 original size:31 final size:30
Alignment explanation
Indices: 24886332--24886394 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
24886322 AAATTCTATT
*
24886332 TTTTCGAAAAATTTAAAATTTTAAAAAATA
1 TTTTCGAAAAATTTAAAATTTAAAAAAATA
* *
24886362 TTTTCTAAAAATTTTAATAA-TTAAAAAATTA
1 TTTTCGAAAAA-TTTAA-AATTTAAAAAAATA
24886393 TT
1 TT
24886395 AAATTTTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 10 0.36
31 16 0.57
32 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (30 bp):
TTTTCGAAAAATTTAAAATTTAAAAAAATA
Found at i:24888512 original size:14 final size:14
Alignment explanation
Indices: 24888501--24888530 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24888491 TTAAAATGTT
24888501 TTTC-GGAAAATGA
1 TTTCTGGAAAATGA
24888514 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
24888528 TTT
1 TTT
24888531 ACTTTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:24888674 original size:20 final size:20
Alignment explanation
Indices: 24888651--24888689 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24888641 ATTTTTACAT
24888651 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
24888671 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
24888690 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:24888939 original size:38 final size:38
Alignment explanation
Indices: 24888896--24888982 Score: 174
Period size: 38 Copynumber: 2.3 Consensus size: 38
24888886 TCCAAACCAC
24888896 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
1 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
24888934 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
1 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
24888972 AATTAATACTA
1 AATTAATACTA
24888983 ATACAACATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (38 bp):
AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
Found at i:24888940 original size:22 final size:22
Alignment explanation
Indices: 24888915--24888979 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
24888905 TAGAAATTAA
24888915 TAATATTATCCAAATGCATAAT
1 TAATATTATCCAAATGCATAAT
* *
24888937 TAATACTA--GAAAT---TAA-
1 TAATATTATCCAAATGCATAAT
24888953 TAATATTATCCAAATGCATAAT
1 TAATATTATCCAAATGCATAAT
24888975 TAATA
1 TAATA
24888980 CTAATACAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 7 0.21
17 3 0.09
18 4 0.12
20 4 0.12
21 3 0.09
22 12 0.36
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (22 bp):
TAATATTATCCAAATGCATAAT
Found at i:24888994 original size:38 final size:38
Alignment explanation
Indices: 24888896--24888995 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 38
24888886 TCCAAACCAC
**
24888896 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
1 AATTAATACTAGAAACAAATAATATTATCCAAATGCAT
**
24888934 AATTAATACTAGAAATTAATAATATTATCCAAATGCAT
1 AATTAATACTAGAAACAAATAATATTATCCAAATGCAT
*
24888972 AATTAATACTA-ATACAACATAATA
1 AATTAATACTAGAAACAA-ATAATA
24888996 ACAACAACAT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 3 0.05
38 55 0.95
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.33
Consensus pattern (38 bp):
AATTAATACTAGAAACAAATAATATTATCCAAATGCAT
Found at i:24890033 original size:32 final size:32
Alignment explanation
Indices: 24889987--24890051 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
24889977 TGTCAATCAT
24889987 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
*
24890019 TTCAATATCTAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
24890051 T
1 T
24890052 ATCTAACATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:24890054 original size:27 final size:29
Alignment explanation
Indices: 24889990--24890059 Score: 90
Period size: 32 Copynumber: 2.4 Consensus size: 29
24889980 CAATCATTTC
*
24889990 AATATCCAACAAGCTTAAAACATAATAAATT
1 AATATCTAACAAGCTTAAAACATAAT-AA-T
24890021 CAATATCTAACAAGCTTAAAACATAAT-A-
1 -AATATCTAACAAGCTTAAAACATAATAAT
24890049 AATATCTAACA
1 AATATCTAACA
24890060 TTCAAGACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 11 0.30
30 1 0.03
32 25 0.68
ACGTcount: A:0.54, C:0.17, G:0.03, T:0.26
Consensus pattern (29 bp):
AATATCTAACAAGCTTAAAACATAATAAT
Found at i:24891674 original size:22 final size:21
Alignment explanation
Indices: 24891630--24891675 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
24891620 AGATGCAAGC
*
24891630 TATTAAAAGCAAAAGATATAA
1 TATTAAAAGCAAAAGAAATAA
24891651 TATTAAAAGCTAAAA-AAATGAA
1 TATTAAAAGC-AAAAGAAAT-AA
24891673 TAT
1 TAT
24891676 AGCTCATGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (21 bp):
TATTAAAAGCAAAAGAAATAA
Found at i:24893377 original size:57 final size:57
Alignment explanation
Indices: 24893289--24893435 Score: 294
Period size: 57 Copynumber: 2.6 Consensus size: 57
24893279 ATATTCGAAA
24893289 CAAACAACATAGATCTACCTTATCCATCTCATTGGATTATAAAAAGCTATCCCAACT
1 CAAACAACATAGATCTACCTTATCCATCTCATTGGATTATAAAAAGCTATCCCAACT
24893346 CAAACAACATAGATCTACCTTATCCATCTCATTGGATTATAAAAAGCTATCCCAACT
1 CAAACAACATAGATCTACCTTATCCATCTCATTGGATTATAAAAAGCTATCCCAACT
24893403 CAAACAACATAGATCTACCTTATCCATCTCATT
1 CAAACAACATAGATCTACCTTATCCATCTCATT
24893436 TTCACCGCCC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 90 1.00
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (57 bp):
CAAACAACATAGATCTACCTTATCCATCTCATTGGATTATAAAAAGCTATCCCAACT
Found at i:24896025 original size:24 final size:24
Alignment explanation
Indices: 24895991--24896042 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
24895981 TTTCTAGAAG
* **
24895991 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
24896015 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
24896039 ATTT
1 ATTT
24896043 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:24899528 original size:50 final size:50
Alignment explanation
Indices: 24899470--24899566 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
24899460 ACTAATTCAT
24899470 TTTTTTTAACTTTCATTTCTCAATATCTACAATTCAATTTGGCTTTCACA
1 TTTTTTTAACTTTCATTTCTCAATATCTACAATTCAATTTGGCTTTCACA
*
24899520 TTTTTTTAACTTTCATTTCTCAATATCTATAATTCAATTTGGCTTTC
1 TTTTTTTAACTTTCATTTCTCAATATCTACAATTCAATTTGGCTTTC
24899567 GTTAGTTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.53
Consensus pattern (50 bp):
TTTTTTTAACTTTCATTTCTCAATATCTACAATTCAATTTGGCTTTCACA
Found at i:24899660 original size:19 final size:18
Alignment explanation
Indices: 24899636--24899671 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
24899626 CATGCTTTCT
24899636 ATTCACATTTTCATATTCA
1 ATTCACATTTT-ATATTCA
24899655 ATTCACATTTTATATTC
1 ATTCACATTTTATATTC
24899672 CACAATCACG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTCACATTTTATATTCA
Found at i:24900485 original size:29 final size:29
Alignment explanation
Indices: 24900443--24900499 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
24900433 ATCTTTTCTT
*
24900443 AATTTATTTCATAATATAATAATATAATC
1 AATTTATTTCATAATATAATAAAATAATC
24900472 AATTTAATTT-ATAATATAATAAAATAAT
1 AATTT-ATTTCATAATATAATAAAATAAT
24900500 AACAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (29 bp):
AATTTATTTCATAATATAATAAAATAATC
Found at i:24900520 original size:37 final size:37
Alignment explanation
Indices: 24900453--24900523 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
24900443 AATTTATTTC
* * *
24900453 ATAATATAATAATATAATCAATTTAATTTATAATATA
1 ATAAAATAATAAAATAATCAATATAATTTATAATATA
*
24900490 ATAAAATAATAACAATAAT-AATATATTTTATAAT
1 ATAAAATAATAA-AATAATCAATATAATTTATAAT
24900524 TAAACAGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 24 0.83
38 5 0.17
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (37 bp):
ATAAAATAATAAAATAATCAATATAATTTATAATATA
Found at i:24903921 original size:38 final size:38
Alignment explanation
Indices: 24903879--24903953 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
24903869 TCTTTTCACA
24903879 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG
1 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG
24903917 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCC
1 GCAATCCAAAATCACTCCATGTTCAGATAACCAATCC
24903954 ATCCCTAGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.37, C:0.32, G:0.09, T:0.21
Consensus pattern (38 bp):
GCAATCCAAAATCACTCCATGTTCAGATAACCAATCCG
Found at i:24906415 original size:19 final size:18
Alignment explanation
Indices: 24906391--24906430 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
24906381 AGTTCATGCT
24906391 TTCTATTCACATTTTCATA
1 TTCTATTCACATTTT-ATA
24906410 TTCTATTCACATTTTATA
1 TTCTATTCACATTTTATA
24906428 TTC
1 TTC
24906431 CACAATCACG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (18 bp):
TTCTATTCACATTTTATA
Found at i:24907271 original size:22 final size:21
Alignment explanation
Indices: 24907243--24907283 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
24907233 TCTTTTTCTA
24907243 TTTGTTTTATCTATTTATTTGT
1 TTTGTTTTATCT-TTTATTTGT
24907265 TTTGTTTTATCTTTTATTT
1 TTTGTTTTATCTTTTATTT
24907284 TACTTTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (21 bp):
TTTGTTTTATCTTTTATTTGT
Found at i:24912300 original size:24 final size:24
Alignment explanation
Indices: 24912266--24912317 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
24912256 TTTCAAGAAG
* **
24912266 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
24912290 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
24912314 ATTT
1 ATTT
24912318 GAATTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:24912328 original size:24 final size:24
Alignment explanation
Indices: 24912283--24912328 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
24912273 ATTTATGAGT
*
24912283 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAGAATTTATTAAC
24912307 ATAATATATTT-GAATTTGATTA
1 ATAATATATTTAGAATTT-ATTA
24912329 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (24 bp):
ATAATATATTTAGAATTTATTAAC
Found at i:24914630 original size:51 final size:52
Alignment explanation
Indices: 24914575--24914797 Score: 217
Period size: 51 Copynumber: 4.4 Consensus size: 52
24914565 TTCGGTGGGT
* * *
24914575 TGCACATAGTACCACCCATGTGACCATTGTC-ATCCGATACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCATTGTCTATCCGATACACGTAGTAGCC
* * * * * *
24914626 TGCACATAGTACT--ACACGTGATCA-AG-CTTTTCGGTTCACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCATTGTCTATCCGATACACGTAGTAGCC
* * * * * * *
24914674 TACACATAGTACTACACACATGACCA-AGGCCATCCGGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCATTGTCTATCCGATACACGTAGTAGCC
* * *
24914725 TGCACATAGTACTACACATGTGATCATTATCTAT-CGATACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCATTGTCTATCCGATACACGTAGTAGCC
*
24914776 TGCACTTAGTACTACACACGTG
1 TGCACATAGTACTACACACGTG
24914798 TTCATAGGTA
Statistics
Matches: 138, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
47 1 0.01
48 29 0.21
49 8 0.06
50 11 0.08
51 86 0.62
52 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (52 bp):
TGCACATAGTACTACACACGTGACCATTGTCTATCCGATACACGTAGTAGCC
Found at i:24922751 original size:113 final size:113
Alignment explanation
Indices: 24922553--24923476 Score: 1821
Period size: 113 Copynumber: 8.2 Consensus size: 113
24922543 TTACAGCGGG
* *
24922553 ATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGTCAGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24922618 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24922666 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24922731 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24922779 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24922844 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24922892 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24922957 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24923005 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24923070 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24923118 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24923183 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24923231 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24923296 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
24923344 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
1 ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
24923409 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
66 AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
*
24923457 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCCAGGATAAAT
24923477 TCAGACCCTA
Statistics
Matches: 808, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 808 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (113 bp):
ATTACCAGTCCAGGATAAATCCCCTGTAATATAAACTCATAGAGTATTGTCGGGATTACCAGTCC
AGGCTAAATCCCCTGCAATGACAATTACTCTAATGAGCTTGGATCTGA
Found at i:24933651 original size:50 final size:50
Alignment explanation
Indices: 24933583--24933770 Score: 216
Period size: 51 Copynumber: 3.7 Consensus size: 50
24933573 TGTCATCCGA
*
24933583 TACACGTAGTAGCCTACACATAGTACTACACACGTGATCAAGCTTTCAGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGCTTTCAGG
* * *
24933633 TGCACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCATTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAA-GCTTTCAGG
* ** * * * *
24933684 TACACATAGTAGCCTGGACATAGTACTACACATGTGACCATTATCTATCA-A
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCA--AGCTTTCAGG
* * *
24933735 TACACGTAGTAGGCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTG
24933771 CTCACAGGTA
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
50 39 0.34
51 73 0.63
52 3 0.03
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGCTTTCAGG
Found at i:24936433 original size:46 final size:46
Alignment explanation
Indices: 24936366--24936453 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
24936356 ATATGTGCAG
* *
24936366 TGTGGGCCTTAGCTAATTACAGT-ATCAGAATCAGAAATAGAATACA
1 TGTGGGCCTAAGCCAATTACAGTGA-CAGAATCAGAAATAGAATACA
*
24936412 TGTGGGCCTAAGCCCAA-TACAGTGACAGAATCAGTAATAGAA
1 TGTGGGCCTAAG-CCAATTACAGTGACAGAATCAGAAATAGAA
24936454 ATGCAACAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
46 33 0.89
47 4 0.11
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (46 bp):
TGTGGGCCTAAGCCAATTACAGTGACAGAATCAGAAATAGAATACA
Found at i:24936724 original size:32 final size:31
Alignment explanation
Indices: 24936669--24936807 Score: 163
Period size: 32 Copynumber: 4.4 Consensus size: 31
24936659 GAATGACTAC
* * *
24936669 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATCAGTACAGTAATATGATCGACACA
* *
24936700 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTA-CAGTAATATGATCGACACA
* * *
24936732 TAGGCATCAGTAACGGTAATATGATCGACACA
1 AAGCCATCAGT-ACAGTAATATGATCGACACA
24936764 AAGCCATCAGTA-ATGATAATATGATCGACACA
1 AAGCCATCAGTACA-G-TAATATGATCGACACA
24936796 AAGCCATCAGTA
1 AAGCCATCAGTA
24936808 GCATCGTAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
31 13 0.14
32 79 0.85
33 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (31 bp):
AAGCCATCAGTACAGTAATATGATCGACACA
Found at i:24937004 original size:11 final size:11
Alignment explanation
Indices: 24936988--24937030 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
24936978 AATCAGTCAT
24936988 ACAAATCACAA
1 ACAAATCACAA
*
24936999 ACAAATCAGTCAT
1 ACAAATCA--CAA
*
24937012 ACCAATCACAA
1 ACAAATCACAA
24937023 ACAAATCA
1 ACAAATCA
24937031 GTCATTTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.56, C:0.28, G:0.02, T:0.14
Consensus pattern (11 bp):
ACAAATCACAA
Found at i:24937010 original size:24 final size:24
Alignment explanation
Indices: 24936978--24937035 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
24936968 CCATGCTCAG
24936978 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
*
24937002 AATCAGTCATACCAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
24937026 AATCAGTCAT
1 AATCAGTCAT
24937036 TTACATCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.50, C:0.26, G:0.05, T:0.19
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:24937043 original size:24 final size:24
Alignment explanation
Indices: 24936978--24937064 Score: 88
Period size: 24 Copynumber: 3.6 Consensus size: 24
24936968 CCATGCTCAG
** *
24936978 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATTTACATCACAAACA
24937002 AATCAGTCA--TACCAATCACAAACA
1 AATCAGTCATTTA-C-ATCACAAACA
**
24937026 AATCAGTCATTTACATCACCGACA
1 AATCAGTCATTTACATCACAAACA
*
24937050 AATCAATCATTTACA
1 AATCAGTCATTTACA
24937065 CTCGAGGGGC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
22 1 0.02
24 50 0.93
25 1 0.02
26 2 0.04
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.22
Consensus pattern (24 bp):
AATCAGTCATTTACATCACAAACA
Found at i:24937137 original size:27 final size:28
Alignment explanation
Indices: 24937101--24937172 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
24937091 CTCTAGGGGC
* *
24937101 ATTACGGTCATTTTACCTGAA-AAGGGT
1 ATTACAGTCATTTTACCTCAATAAGGGT
* *
24937128 ATTTCAGTCATTTTACC-CAATGAGGGT
1 ATTACAGTCATTTTACCTCAATAAGGGT
24937155 ATTACAGTCATTTTACCT
1 ATTACAGTCATTTTACCT
24937173 TACAGGGGCA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (28 bp):
ATTACAGTCATTTTACCTCAATAAGGGT
Found at i:24937185 original size:27 final size:27
Alignment explanation
Indices: 24937095--24937207 Score: 79
Period size: 27 Copynumber: 4.1 Consensus size: 27
24937085 TTTACCCTCT
* * *
24937095 AGGGGCATTACGGTCATTTTACCTGAA
1 AGGGGCATTACAGTCATTTTACCTTAC
* * * *
24937122 AAGGGTATTTCAGTCATTTTACC-CA-
1 AGGGGCATTACAGTCATTTTACCTTAC
*
24937147 ATGAGGGTATTACAGTCATTTTACCTTAC
1 A-G-GGGCATTACAGTCATTTTACCTTAC
* *
24937176 AGGGGCATTA-TGATCATTTTACCCTAC
1 AGGGGCATTACAG-TCATTTTACCTTAC
24937203 GAGGG
1 -AGGG
24937208 TATTTCGATC
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 59 0.86
28 6 0.09
29 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (27 bp):
AGGGGCATTACAGTCATTTTACCTTAC
Found at i:24937217 original size:27 final size:27
Alignment explanation
Indices: 24937123--24937490 Score: 385
Period size: 27 Copynumber: 13.7 Consensus size: 27
24937113 TTACCTGAAA
24937123 AGGGTATTTC-AGTCATTTTACCCAAT-G
1 AGGGTATTTCGA-TCATTTTACCC-ATCG
* *
24937150 AGGGTATTAC-AGTCATTTTA-CCTTAC-
1 AGGGTATTTCGA-TCATTTTACCCAT-CG
*
24937176 AGGGGCATTAT-GATCATTTTACCC-TACG
1 A-GGGTATT-TCGATCATTTTACCCAT-CG
*
24937204 AGGGTATTTCGATCATTTTACCGATCG
1 AGGGTATTTCGATCATTTTACCCATCG
* * *
24937231 AGGATATTT-TAGTAATTTTACCCATCG
1 AGGGTATTTCGA-TCATTTTACCCATCG
** **
24937258 AGGGTATTTTAATCATTTTATTCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
* *
24937285 AGGGTATTTCAATAATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
24937312 AGGGTAGTTCGATCATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
* *
24937339 AGGGTATTTTGGTCATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
24937366 AGGGTATTTCAATCATTTTACCCATC-
1 AGGGTATTTCGATCATTTTACCCATCG
*
24937392 AGGGTATTTCGATCATTTTACCCAGCG
1 AGGGTATTTCGATCATTTTACCCATCG
* * * *
24937419 GGGGCATTTTGGTCATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
24937446 AGGGTATTTCGATAATTTTACCCATCG
1 AGGGTATTTCGATCATTTTACCCATCG
*
24937473 AGGGTTTTTCGATCATTT
1 AGGGTATTTCGATCATTT
24937491 AACAAATATT
Statistics
Matches: 287, Mismatches: 42, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.00
26 29 0.10
27 251 0.87
28 6 0.02
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATCATTTTACCCATCG
Found at i:24939261 original size:40 final size:41
Alignment explanation
Indices: 24939202--24939293 Score: 132
Period size: 44 Copynumber: 2.2 Consensus size: 41
24939192 GATTCCCTTC
24939202 CATTTTCTGTCTGT-TTGTTTCTAGTTAATCCGGGTAACTT
1 CATTTTCTGTCTGTCTTGTTTCTAGTTAATCCGGGTAACTT
* *
24939242 CATTTTCTGTCTAGCTGTTTGTTTCTGGTTAATCCGGGTAACTT
1 CATTTTCTGTCT-G-T-CTTGTTTCTAGTTAATCCGGGTAACTT
24939286 CATTTTCT
1 CATTTTCT
24939294 TGTTCTTGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
40 12 0.26
41 1 0.02
42 1 0.02
44 33 0.70
ACGTcount: A:0.14, C:0.18, G:0.17, T:0.50
Consensus pattern (41 bp):
CATTTTCTGTCTGTCTTGTTTCTAGTTAATCCGGGTAACTT
Found at i:24940465 original size:12 final size:12
Alignment explanation
Indices: 24940448--24940480 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24940438 TTTTCCAAAC
24940448 TTGTTTTTTTTT
1 TTGTTTTTTTTT
24940460 TTGTTTTTGTTTT
1 TTGTTTTT-TTTT
24940473 TT-TTTTTT
1 TTGTTTTTT
24940481 GCGTTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 13 0.65
13 6 0.30
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (12 bp):
TTGTTTTTTTTT
Found at i:24941064 original size:5 final size:5
Alignment explanation
Indices: 24941054--24941078 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24941044 TTGCTTTTAG
24941054 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
24941079 TCTTTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:24943217 original size:22 final size:23
Alignment explanation
Indices: 24943192--24943246 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
24943182 TGTACTATGA
*
24943192 TGCCTACTGATTCA-CACTTCGG
1 TGCCTACTGATTAATCACTTCGG
* *
24943214 TGCCTACT-ACTAATCACTTTGG
1 TGCCTACTGATTAATCACTTCGG
24943236 TGCCTACTGAT
1 TGCCTACTGAT
24943247 ATGGTGTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 3 0.11
22 23 0.85
23 1 0.04
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (23 bp):
TGCCTACTGATTAATCACTTCGG
Found at i:24943891 original size:16 final size:16
Alignment explanation
Indices: 24943870--24943900 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24943860 TTCATTAGTA
*
24943870 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
24943886 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
24943901 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:24945487 original size:14 final size:14
Alignment explanation
Indices: 24945465--24945496 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
24945455 AGGTCATTTA
*
24945465 GCCCCACCAAACTG
1 GCCCAACCAAACTG
24945479 GCCCAACCAAACTG
1 GCCCAACCAAACTG
24945493 GCCC
1 GCCC
24945497 GGTGATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.50, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:24950607 original size:14 final size:14
Alignment explanation
Indices: 24950588--24950619 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
24950578 AGGTCATTTA
24950588 GCCCAACCAAACTG
1 GCCCAACCAAACTG
24950602 GCCCAACCAAACTG
1 GCCCAACCAAACTG
24950616 GCCC
1 GCCC
24950620 GATGATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:24959076 original size:68 final size:70
Alignment explanation
Indices: 24958967--24959095 Score: 165
Period size: 68 Copynumber: 1.9 Consensus size: 70
24958957 TTTTAATAGT
*
24958967 TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTT-ATTA-ATTTAATATTAAAGTAA
1 TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTTAATAAGATTTAATATTAAAGTAA
24959030 TTATC
66 TTATC
** * ** *
24959035 TTAATATTAAATTAAATTTAATGTTTATCATT-CTATTATTTTAATAAGATTTACTATTAAA
1 TTAATATTAAATTAAATTTAATACTTAT-ATTAATAGCATTTTAATAAGATTTAATATTAAA
24959096 TTTAATCTAA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
68 33 0.65
69 6 0.12
70 12 0.24
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.50
Consensus pattern (70 bp):
TTAATATTAAATTAAATTTAATACTTATATTAATAGCATTTTAATAAGATTTAATATTAAAGTAA
TTATC
Found at i:24959158 original size:15 final size:17
Alignment explanation
Indices: 24959097--24959157 Score: 74
Period size: 17 Copynumber: 3.8 Consensus size: 17
24959087 ACTATTAAAT
24959097 TTAATCTAATATTTATC
1 TTAATCTAATATTTATC
24959114 TTAATCTAATATTTATC
1 TTAATCTAATATTTATC
* * *
24959131 TTGAT-AAATA-TTATA
1 TTAATCTAATATTTATC
24959146 TTAAT-TAATATT
1 TTAATCTAATATT
24959158 AAAGTGATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
15 12 0.32
16 5 0.13
17 21 0.55
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (17 bp):
TTAATCTAATATTTATC
Found at i:24965661 original size:56 final size:55
Alignment explanation
Indices: 24965575--24965685 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 55
24965565 TCCTTATAAT
24965575 AACTTGGCAATTCCTCCCTCTATCTATATAATTATCCGAAGGAGAAACTCTTTCC
1 AACTTGGCAATTCCTCCCTCTATCTATATAATTATCCGAAGGAGAAACTCTTTCC
*
24965630 NAACTTGGCAATTCCTCCCTCTATCTATATAATTATCCGAAGGAGAATCTCTTTCC
1 -AACTTGGCAATTCCTCCCTCTATCTATATAATTATCCGAAGGAGAAACTCTTTCC
24965686 CAAAGCTTTT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.33
Consensus pattern (55 bp):
AACTTGGCAATTCCTCCCTCTATCTATATAATTATCCGAAGGAGAAACTCTTTCC
Found at i:24997184 original size:36 final size:37
Alignment explanation
Indices: 24997110--24997294 Score: 239
Period size: 36 Copynumber: 5.0 Consensus size: 37
24997100 AAAAAAATAA
24997110 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
24997147 TACTGATTATATTGAAAGTGCTC-AATGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * * * *
24997183 TATTGATCCTACTGAATGTGCTCAAATGAGCAATGTC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
24997220 TACTGATTCTACTG-AAGTGCTCAAACGAGCAATATC
1 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
* * *
24997256 TACTAATTCTACTGAATAGTTGCTCAAACAAGCATTATC
1 TACTGATTCTACTGAA-AG-TGCTCAAACGAGCAATATC
24997295 CATTGATTAT
Statistics
Matches: 127, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
36 62 0.49
37 46 0.36
38 2 0.02
39 17 0.13
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (37 bp):
TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATC
Found at i:24997250 original size:73 final size:73
Alignment explanation
Indices: 24997110--24997307 Score: 245
Period size: 73 Copynumber: 2.7 Consensus size: 73
24997100 AAAAAAATAA
* * *
24997110 TACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATTATATTGAAAGTGCTCAATGA
1 TACTGATTCTACTGAATGTGCTCAAACGAGCAATATCTACTGATTATACTGAAAGTGCTCAACGA
24997175 GCAATATC
66 GCAATATC
* * * * *
24997183 TATTGATCCTACTGAATGTGCTCAAATGAGCAATGTCTACTGATTCTACTG-AAGTGCTCAAACG
1 TACTGATTCTACTGAATGTGCTCAAACGAGCAATATCTACTGATTATACTGAAAGTGCTC-AACG
24997247 AGCAATATC
65 AGCAATATC
* * * * *
24997256 TACTAATTCTACTGAATAGTTGCTCAAACAAGCATTATCCATTGATTATACT
1 TACTGATTCTACTGAAT-G-TGCTCAAACGAGCAATATCTACTGATTATACT
24997308 AAATAAGATT
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
72 8 0.08
73 70 0.67
74 1 0.01
75 25 0.24
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (73 bp):
TACTGATTCTACTGAATGTGCTCAAACGAGCAATATCTACTGATTATACTGAAAGTGCTCAACGA
GCAATATC
Found at i:24998793 original size:24 final size:24
Alignment explanation
Indices: 24998766--24998814 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
24998756 CTTGAAACCA
24998766 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
*
24998790 TTTCCACAGCTCTTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
24998814 T
1 T
24998815 CTTCACCCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.47, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:25005976 original size:23 final size:22
Alignment explanation
Indices: 25005920--25005980 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
25005910 AAAAATACAT
*
25005920 GAGCA-CATAAGTGCTAAATCGG
1 GAGCACCA-AAGTGCTAAATCAG
25005942 GAGCACCAAAGTGCTAAATTCAG
1 GAGCACCAAAGTGCTAAA-TCAG
* *
25005965 TAGCACCGAAGTGCTA
1 GAGCACCAAAGTGCTA
25005981 GTTTCAAGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (22 bp):
GAGCACCAAAGTGCTAAATCAG
Found at i:25005986 original size:23 final size:23
Alignment explanation
Indices: 25005928--25005980 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
25005918 ATGAGCACAT
* *
25005928 AAGTGCTAAA-TCGGGAGCACCA
1 AAGTGCTAAATTCAGTAGCACCA
*
25005950 AAGTGCTAAATTCAGTAGCACCG
1 AAGTGCTAAATTCAGTAGCACCA
25005973 AAGTGCTA
1 AAGTGCTA
25005981 GTTTCAAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (23 bp):
AAGTGCTAAATTCAGTAGCACCA
Found at i:25009977 original size:11 final size:11
Alignment explanation
Indices: 25009963--25009995 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
25009953 GAAAAAGTGC
25009963 AGAGAAAACTA
1 AGAGAAAACTA
*
25009974 AGAG-AAACTT
1 AGAGAAAACTA
25009984 AGAGAAAACTA
1 AGAGAAAACTA
25009995 A
1 A
25009996 ACCTAAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.61, C:0.09, G:0.18, T:0.12
Consensus pattern (11 bp):
AGAGAAAACTA
Found at i:25015161 original size:194 final size:193
Alignment explanation
Indices: 25014832--25015218 Score: 720
Period size: 194 Copynumber: 2.0 Consensus size: 193
25014822 CTATCTACCC
25014832 AAAGTTTTGGTAGACTCTTGATTTTGTTTGGTTCGATCGAAGTGGCATGTATATAGATAGTTGGT
1 AAAGTTTTGGTAGACTCTTGATTTTGTTTGGTTCGATCGAAGTGGCATGTATATAGATAGTTGGT
*
25014897 TATTTGTAAATAAATGTGTTAAATTTAGAAGTTGATTGCTTTGGAATCTGTTGATGTATATAAAT
66 TATTTGTAAACAAATGTGTTAAATTTAGAAGTTGATTGCTTTGGAATCTGTTGATGTATATAAAT
*
25014962 AAAATGAACTCAGGTTCTGTTATGTTCCGCATTATAAGTTTTGCGGGATCTATCGCAGTTTGGG
131 AAAATGAACTCA-GATCTGTTATGTTCCGCATTATAAGTTTTGCGGGATCTATCGCAGTTTGGG
*
25015026 AAAGTTTTGGTAGACTCTTGATTTTTTTTGGTTCGATCGAAGTGGCATGTATATAGATAGTTGGT
1 AAAGTTTTGGTAGACTCTTGATTTTGTTTGGTTCGATCGAAGTGGCATGTATATAGATAGTTGGT
25015091 TATTTGTAAACAAATGTGTTAAATTTAGAAGTTGATTGCTTTGGAATCTGTTGATGTATATAAAT
66 TATTTGTAAACAAATGTGTTAAATTTAGAAGTTGATTGCTTTGGAATCTGTTGATGTATATAAAT
* *
25015156 AAAATGAACTCAGATCTGTTATGTTTCGCATTATAAGTTTTGCGGGATCTATTGCAGTTTGGG
131 AAAATGAACTCAGATCTGTTATGTTCCGCATTATAAGTTTTGCGGGATCTATCGCAGTTTGGG
25015219 GTATTCGTAG
Statistics
Matches: 188, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
193 48 0.26
194 140 0.74
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (193 bp):
AAAGTTTTGGTAGACTCTTGATTTTGTTTGGTTCGATCGAAGTGGCATGTATATAGATAGTTGGT
TATTTGTAAACAAATGTGTTAAATTTAGAAGTTGATTGCTTTGGAATCTGTTGATGTATATAAAT
AAAATGAACTCAGATCTGTTATGTTCCGCATTATAAGTTTTGCGGGATCTATCGCAGTTTGGG
Found at i:25016194 original size:22 final size:22
Alignment explanation
Indices: 25016169--25016238 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 22
25016159 AAATGTCACA
*
25016169 ACATTGAAGGTCAGATGTTGCG
1 ACATTGAAGGTCGGATGTTGCG
* * *
25016191 ACATTGCAGGTCGGATGTTACA
1 ACATTGAAGGTCGGATGTTGCG
* *
25016213 ACATTGAAGGTTGGATGTCGCG
1 ACATTGAAGGTCGGATGTTGCG
25016235 ACAT
1 ACAT
25016239 CAGAGACAGA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (22 bp):
ACATTGAAGGTCGGATGTTGCG
Found at i:25016922 original size:23 final size:23
Alignment explanation
Indices: 25016878--25016964 Score: 86
Period size: 23 Copynumber: 3.8 Consensus size: 23
25016868 AATAGCACAT
**
25016878 AAGTGCTAAA-TCGGGAGCACCA
1 AAGTGCTAAATTCAAGAGCACCA
25016900 AAGTGCTAAATTCAAGAGCACCA
1 AAGTGCTAAATTCAAGAGCACCA
* ** **
25016923 AAGTCCTAGTTTCAAGAGCATTA
1 AAGTGCTAAATTCAAGAGCACCA
* *
25016946 GAGTGCTAAATTCATGAGC
1 AAGTGCTAAATTCAAGAGC
25016965 GCGTTATGGA
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 10 0.19
23 42 0.81
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (23 bp):
AAGTGCTAAATTCAAGAGCACCA
Found at i:25019774 original size:30 final size:30
Alignment explanation
Indices: 25019739--25019799 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
25019729 AGATGTTATT
25019739 TTTAATGAAACTTTTATGTTGTCTAACTTA
1 TTTAATGAAACTTTTATGTTGTCTAACTTA
25019769 TTTAATGAAACTTTTATGTTGTCTAACTTA
1 TTTAATGAAACTTTTATGTTGTCTAACTTA
25019799 T
1 T
25019800 CTCTTAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (30 bp):
TTTAATGAAACTTTTATGTTGTCTAACTTA
Found at i:25028823 original size:35 final size:35
Alignment explanation
Indices: 25028772--25028838 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
25028762 ATATGATGAC
*
25028772 TAAGTCACTTCCTATAACCAAGTTTGAGCATTACT
1 TAAGTCACTTCCTATAACCAAGTTTAAGCATTACT
*
25028807 TAAGTCACTTCTTATAACCAAGTTTAAGCATT
1 TAAGTCACTTCCTATAACCAAGTTTAAGCATT
25028839 GCTTGGACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (35 bp):
TAAGTCACTTCCTATAACCAAGTTTAAGCATTACT
Found at i:25029224 original size:28 final size:28
Alignment explanation
Indices: 25029193--25029248 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
25029183 GATTTCTACG
25029193 TAAAATCTGTGTGTTTTATTTTTCCTTT
1 TAAAATCTGTGTGTTTTATTTTTCCTTT
25029221 TAAAATCTGTGTGTTTTATTTTTCCTTT
1 TAAAATCTGTGTGTTTTATTTTTCCTTT
25029249 CTTTTTTGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.61
Consensus pattern (28 bp):
TAAAATCTGTGTGTTTTATTTTTCCTTT
Found at i:25035005 original size:13 final size:14
Alignment explanation
Indices: 25034972--25035011 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
25034962 AAGAAAGTTG
* *
25034972 TAAAAGATAGACAA
1 TAAAAAATATACAA
25034986 TAAAAAATATACAA
1 TAAAAAATATACAA
25035000 -AAAAAATATACA
1 TAAAAAATATACA
25035012 GAGGTTGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.17
Consensus pattern (14 bp):
TAAAAAATATACAA
Found at i:25035672 original size:5 final size:5
Alignment explanation
Indices: 25035657--25035696 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
25035647 TTTTTCTTTA
*
25035657 ATTTT ATTTTT GTTTT ATTTT ATTTT ATTTT -TTTT ATTTT
1 ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
25035697 TATTGATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 4 0.13
5 23 0.74
6 4 0.13
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
ATTTT
Found at i:25035677 original size:10 final size:9
Alignment explanation
Indices: 25035645--25035697 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
25035635 CTAGTCCTCC
25035645 TATTTTTCTT
1 TATTTTT-TT
* *
25035655 TAATTTTAT
1 TATTTTTTT
*
25035664 T-TTTGTTT
1 TATTTTTTT
25035672 TATTTTATTT
1 TATTTT-TTT
25035682 TATTTTTTT
1 TATTTTTTT
25035691 TATTTTT
1 TATTTTT
25035698 ATTGATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
8 5 0.14
9 15 0.43
10 15 0.43
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (9 bp):
TATTTTTTT
Found at i:25035681 original size:21 final size:19
Alignment explanation
Indices: 25035647--25035696 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
25035637 AGTCCTCCTA
* *
25035647 TTTTTCTTTAATTTTATTTT
1 TTTTTATTTTATTTTA-TTT
25035667 TGTTTTATTTTATTTTATTT
1 T-TTTTATTTTATTTTATTT
25035687 TTTTTATTTT
1 TTTTTATTTT
25035697 TATTGATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 9 0.33
20 5 0.19
21 13 0.48
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTATTTTATTTTATTT
Found at i:25035688 original size:16 final size:16
Alignment explanation
Indices: 25035645--25035700 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
25035635 CTAGTCCTCC
* *
25035645 TATTTTTCTTTAATTT
1 TATTTTTATTTTATTT
*
25035661 TATTTTTGTTTTATTT
1 TATTTTTATTTTATTT
25035677 TA-TTTTATTTT-TTT
1 TATTTTTATTTTATTT
25035691 TATTTTTATT
1 TATTTTTATT
25035701 GATTTGATGC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.14
15 15 0.42
16 16 0.44
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (16 bp):
TATTTTTATTTTATTT
Found at i:25044868 original size:29 final size:31
Alignment explanation
Indices: 25044819--25044878 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
25044809 TAAGGCCTCG
25044819 TTTATCTAAATAAAAAATAAAGGGTTTATTT
1 TTTATCTAAATAAAAAATAAAGGGTTTATTT
*
25044850 TTTATC-AAA-AATAAATAAAGGGTTTATTT
1 TTTATCTAAATAAAAAATAAAGGGTTTATTT
25044879 AGTATATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 19 0.68
30 3 0.11
31 6 0.21
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (31 bp):
TTTATCTAAATAAAAAATAAAGGGTTTATTT
Found at i:25048303 original size:24 final size:23
Alignment explanation
Indices: 25048259--25048303 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
25048249 TAATAATTTT
**
25048259 ATTTTTATGATACATTTTTTTAA
1 ATTTTTATGATACATGCTTTTAA
*
25048282 ATTTTTATGTATATATGCTTTT
1 ATTTTTATG-ATACATGCTTTT
25048304 GTGCTTTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (23 bp):
ATTTTTATGATACATGCTTTTAA
Found at i:25052427 original size:39 final size:38
Alignment explanation
Indices: 25052378--25052474 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 38
25052368 GATATAATTT
* *
25052378 AATGAAATACATAAATATAATA-ATACATGATA-ATGCATG
1 AATGAAATACATAAATATAATACATA-ATAATATAT--ATA
*
25052417 AATGCAATACATAAATATAATACATAATAATATATATA
1 AATGAAATACATAAATATAATACATAATAATATATATA
*
25052455 AATGTAATACATAAATATAA
1 AATGAAATACATAAATATAA
25052475 CAAGGATAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 21 0.40
39 26 0.50
40 5 0.10
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (38 bp):
AATGAAATACATAAATATAATACATAATAATATATATA
Found at i:25052450 original size:15 final size:13
Alignment explanation
Indices: 25052383--25052474 Score: 82
Period size: 13 Copynumber: 7.2 Consensus size: 13
25052373 AATTTAATGA
25052383 AATACATAAATAT
1 AATACATAAATAT
*
25052396 AATA-ATACATGAT
1 AATACATAAAT-AT
* * **
25052409 AATGCATGAATGC
1 AATACATAAATAT
25052422 AATACATAAATAT
1 AATACATAAATAT
25052435 AATACAT-AATA-
1 AATACATAAATAT
* *
25052446 ATATATATAAATGT
1 A-ATACATAAATAT
25052460 AATACATAAATAT
1 AATACATAAATAT
25052473 AA
1 AA
25052475 CAAGGATAAG
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
11 1 0.02
12 14 0.23
13 40 0.67
14 5 0.08
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (13 bp):
AATACATAAATAT
Found at i:25053748 original size:23 final size:24
Alignment explanation
Indices: 25053707--25053756 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
25053697 GGACTTTATT
25053707 TTTTTTTATTTTGGGTTTGTTTGA
1 TTTTTTTATTTTGGGTTTGTTTGA
* *
25053731 TTTTTTTATTTT-GTTTTGTTTTA
1 TTTTTTTATTTTGGGTTTGTTTGA
25053754 TTT
1 TTT
25053757 ATTTGGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.08, C:0.00, G:0.14, T:0.78
Consensus pattern (24 bp):
TTTTTTTATTTTGGGTTTGTTTGA
Found at i:25053761 original size:18 final size:18
Alignment explanation
Indices: 25053722--25053760 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
25053712 TTATTTTGGG
25053722 TTTGTTTGATTTTTTTAT
1 TTTGTTTGATTTTTTTAT
25053740 TTTGTTTTG-TTTTATTTAT
1 TTTG-TTTGATTTT-TTTAT
25053759 TT
1 TT
25053761 GGGTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (18 bp):
TTTGTTTGATTTTTTTAT
Found at i:25055333 original size:18 final size:17
Alignment explanation
Indices: 25055310--25055352 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
25055300 ATACAAGTAC
*
25055310 TTTGGTTGGTAATGTGAA
1 TTTGGTTGATAAT-TGAA
25055328 TTTGGTTTGATAATTGAA
1 TTTGG-TTGATAATTGAA
25055346 TTGTGGT
1 TT-TGGT
25055353 GCCAATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (17 bp):
TTTGGTTGATAATTGAA
Found at i:25057693 original size:18 final size:17
Alignment explanation
Indices: 25057647--25057694 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
25057637 CAAAATTGTT
25057647 ATGTGAAGTGAATAAGC
1 ATGTGAAGTGAATAAGC
* *
25057664 -TCGTGAATTGAACTAGGC
1 AT-GTGAAGTGAA-TAAGC
25057682 ATGTGAAGTGAAT
1 ATGTGAAGTGAAT
25057695 TAAATATGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
16 1 0.04
17 10 0.40
18 13 0.52
19 1 0.04
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (17 bp):
ATGTGAAGTGAATAAGC
Found at i:25060861 original size:15 final size:15
Alignment explanation
Indices: 25060837--25060892 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 15
25060827 TTTAGAAAAC
*
25060837 ATATAAAAATTTATA
1 ATATATAAATTTATA
25060852 ATATATAAA--T-TA
1 ATATATAAATTTATA
25060864 ATA-A-AAATTTATA
1 ATATATAAATTTATA
* *
25060877 ATTTATAATTTTATA
1 ATATATAAATTTATA
25060892 A
1 A
25060893 AAATATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
10 3 0.09
11 1 0.03
12 6 0.18
13 5 0.15
14 1 0.03
15 17 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATAAATTTATA
Found at i:25060867 original size:25 final size:25
Alignment explanation
Indices: 25060839--25060911 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
25060829 TAGAAAACAT
25060839 ATAAAAATTTATAATATATAAATTA
1 ATAAAAATTTATAATATATAAATTA
* * *
25060864 ATAAAAATTTATAATTTATAATTTT
1 ATAAAAATTTATAATATATAAATTA
* *
25060889 ATAAAAATATATAAACATATAAA
1 ATAAAAATTTAT-AATATATAAA
25060912 AGAACTAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 33 0.82
26 7 0.17
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAAAAATTTATAATATATAAATTA
Found at i:25063991 original size:44 final size:44
Alignment explanation
Indices: 25063854--25064191 Score: 134
Period size: 44 Copynumber: 7.8 Consensus size: 44
25063844 ACTTGATGCG
* * * * *
25063854 ATCTGCTCTATTGCAACCTCAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA
* ** * * * * *
25063898 ATCCGCTCCACCACAACCTCAGGGAAATAGGAT-TATCGACTTTA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCT-TACTTCA
*
25063942 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTT-CTTCA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCT-CTTACTTCA
* * * ** * * * *
25063986 GTCTGCCCCATTGTGACTTTAGGGGGATAAGACCTGCTTAC-TCA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCT-CTTACTTCA
* * * * * * *
25064030 GTCTGCTCTACTACAACCTCAGGAAGATAAGA-C-CTGA-TGCG
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA
** * * * * * *
25064071 ATCCACTCTACTGCAACTTTAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA
* * * * * * *
25064115 ATCCGCTCCACTACAACTTCAAGGAGATAGGATTATCGGT--TTCA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA-TCTC-TTACTTCA
* * * *
25064159 ATCTGCTCCGCTGTAACTTCAGCGAGATAAGAT
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGAT
25064192 TTGTAGTTTC
Statistics
Matches: 213, Mismatches: 71, Indels: 21
0.70 0.23 0.07
Matches are distributed among these distances:
41 28 0.13
42 1 0.00
43 7 0.03
44 171 0.80
45 4 0.02
46 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACCTCAGGGAGATAAGATCTCTTACTTCA
Found at i:25065520 original size:15 final size:14
Alignment explanation
Indices: 25065493--25065544 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
25065483 TTAGCCTCTC
25065493 CATTTTTACTTTTT
1 CATTTTTACTTTTT
*
25065507 CATTTTTCATTTTTT
1 CATTTTT-ACTTTTT
25065522 CATTTTTTACTCTTTT
1 CA-TTTTTACT-TTTT
25065538 -ATTTTTA
1 CATTTTTA
25065545 GTTTGAGGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 13 0.39
15 11 0.33
16 9 0.27
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTACTTTTT
Found at i:25083176 original size:3 final size:3
Alignment explanation
Indices: 25083168--25083212 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
25083158 TATATATAGG
* *
25083168 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25083213 GGAGCTGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25088755 original size:23 final size:24
Alignment explanation
Indices: 25088710--25088755 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
25088700 GCGCATTATG
* *
25088710 TTGGCCTTTGTGGTGTACTTCTGT
1 TTGGCCTTTGTGGCGTACATCTGT
25088734 TTGGCCTTTGTGGCGTA-ATCTG
1 TTGGCCTTTGTGGCGTACATCTG
25088756 CTAAGCCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.07, C:0.17, G:0.30, T:0.46
Consensus pattern (24 bp):
TTGGCCTTTGTGGCGTACATCTGT
Done.