Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 83 of 185
Found at i:26047441 original size:27 final size:27
Alignment explanation
Indices: 26047411--26047466 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
26047401 CATGTTTAAA
26047411 ATTTGGCATGCTTTAGACATCCATAGC
1 ATTTGGCATGCTTTAGACATCCATAGC
*
26047438 ATTTGGCATGCTTTAGACATCCATGGC
1 ATTTGGCATGCTTTAGACATCCATAGC
26047465 AT
1 AT
26047467 CTCATACATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
ATTTGGCATGCTTTAGACATCCATAGC
Found at i:26063138 original size:5 final size:5
Alignment explanation
Indices: 26063128--26063174 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
26063118 AGAAGAGGGA
26063128 AAAAG AAAAG AAAAG AAAAG AAAA- AGAAAG AAAA- AGAAAG -AAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG A-AAAG AAAAG AAA
26063175 GGAGGAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
4 6 0.16
5 30 0.81
6 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:26063150 original size:21 final size:20
Alignment explanation
Indices: 26063126--26063170 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
26063116 TGAGAAGAGG
26063126 GAAAAAGAAA-AGAAAAGAAAA
1 GAAAAAGAAAGA-AAAAG-AAA
26063147 GAAAAAGAAAGAAAAAGAAA
1 GAAAAAGAAAGAAAAAGAAA
26063167 GAAA
1 GAAA
26063171 GAAAGGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.30
21 15 0.65
22 1 0.04
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (20 bp):
GAAAAAGAAAGAAAAAGAAA
Found at i:26066689 original size:27 final size:27
Alignment explanation
Indices: 26066659--26066836 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26066649 ATATTGAGTC
* * * *
26066659 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26066686 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26066713 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26066741 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26066768 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26066795 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26066822 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26066837 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26066798 original size:82 final size:81
Alignment explanation
Indices: 26066680--26066835 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26066670 TGCTATATAA
* *
26066680 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26066745 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26066762 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26066826 CACTTAGTGC
65 CACTTAGTGC
26066836 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26074752 original size:27 final size:27
Alignment explanation
Indices: 26074722--26074899 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26074712 ATATTGAGTC
* * * *
26074722 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26074749 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26074776 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26074804 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26074831 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26074858 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26074885 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26074900 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26074861 original size:82 final size:81
Alignment explanation
Indices: 26074743--26074898 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26074733 TGCTATATAA
* *
26074743 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26074808 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26074825 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26074889 CACTTAGTGC
65 CACTTAGTGC
26074899 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26081367 original size:14 final size:15
Alignment explanation
Indices: 26081348--26081376 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26081338 GAGAAGAAGG
26081348 AAAAAG-AAAAGAAA
1 AAAAAGAAAAAGAAA
26081362 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
26081377 GAAGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAA
Found at i:26081370 original size:20 final size:20
Alignment explanation
Indices: 26081347--26081386 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26081337 GGAGAAGAAG
26081347 GAAAAAGAAAAGAA-AAAAAA
1 GAAAAAG-AAAGAAGAAAAAA
26081367 GAAAAAGAAAGAAGAAAAAA
1 GAAAAAGAAAGAAGAAAAAA
26081387 TTTAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
GAAAAAGAAAGAAGAAAAAA
Found at i:26081377 original size:10 final size:10
Alignment explanation
Indices: 26081341--26081379 Score: 53
Period size: 9 Copynumber: 3.9 Consensus size: 10
26081331 AATTAGGGAG
*
26081341 AAGAAGGAAA
1 AAGAAAGAAA
26081351 AAGAAAAGAAA
1 AAG-AAAGAAA
26081362 AA-AAAGAAA
1 AAGAAAGAAA
26081371 AAGAAAGAA
1 AAGAAAGAA
26081380 GAAAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 9 0.35
10 9 0.35
11 8 0.31
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:26092793 original size:9 final size:9
Alignment explanation
Indices: 26092779--26092815 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26092769 TTAAATCATG
26092779 ATTATGTTA
1 ATTATGTTA
26092788 ATTATGTTA
1 ATTATGTTA
26092797 ATTATGTTA
1 ATTATGTTA
*
26092806 ATTAAGTTA
1 ATTATGTTA
26092815 A
1 A
26092816 ATTAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (9 bp):
ATTATGTTA
Found at i:26095923 original size:72 final size:72
Alignment explanation
Indices: 26095806--26095971 Score: 307
Period size: 72 Copynumber: 2.3 Consensus size: 72
26095796 GATACCTAGG
26095806 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
1 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
26095871 AACCAAT
66 AACCAAT
*
26095878 TTAAGTATTGATACAGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
1 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
26095943 AACCAAT
66 AACCAAT
*
26095950 TTAAGTATTAATACCGT-TTTAG
1 TTAAGTATTGATACCGTATTTAG
26095972 AATTTTTCAA
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 5 0.05
72 86 0.95
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (72 bp):
TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
AACCAAT
Found at i:26100077 original size:10 final size:10
Alignment explanation
Indices: 26100062--26100090 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
26100052 ATTGTGTGTT
26100062 TGAATAGAAA
1 TGAATAGAAA
26100072 TGAATAG-AA
1 TGAATAGAAA
26100081 TGAATAGAAA
1 TGAATAGAAA
26100091 ATGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:26103778 original size:28 final size:28
Alignment explanation
Indices: 26103725--26103805 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
26103715 TCTAAGGGCA
*
26103725 TTCGATCATTTTA-CCTTACAG-GGGTAC
1 TTCGGTCATTTTACCCTT-CAGAGGGTAC
*
26103752 TTCGGTCATTTTACCCTTCAGAGGGTAT
1 TTCGGTCATTTTACCCTTCAGAGGGTAC
* *
26103780 TTTGGTCAATTTACCCTTCA-AGGGTA
1 TTCGGTCATTTTACCCTTCAGAGGGTA
26103806 TTTCAGTCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.44
28 27 0.56
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (28 bp):
TTCGGTCATTTTACCCTTCAGAGGGTAC
Found at i:26128005 original size:220 final size:220
Alignment explanation
Indices: 26127621--26128061 Score: 812
Period size: 220 Copynumber: 2.0 Consensus size: 220
26127611 ATGGAGCCAT
26127621 TGCACAAGCTAAAGAAACAATATCTCACCAGTGATCCAAACATATACTTAGGCGCTACCATCTTA
1 TGCACAAGCTAAAGAAACAATATCTCACCAGTGATCCAAACATATACTTAGGCGCTACCATCTTA
*
26127686 TTCGAGAGATTATCGACTGAGGGGATGTAGACATATGCAGAGTACCTACAGATGATAACATTATT
66 TTCGAGAGATTATCGACTGAGGGGATGTAGACATATGCAGAGTACCTACAGATGATAACATTACT
* *
26127751 GATCCCTTGACCAAGCCTCTGACACAGTAGAAGCATGATCGTCACACTAAGTCGCTTGGTATTAG
131 GATCCCTTGACCAAGCCTCTGACACAGCAGAAGCATGATCGTCACACTAAGTCACTTGGTATTAG
*
26127816 ATATATAAGTTATTGGTCTTAGTGC
196 ATATATAAGTGATTGGTCTTAGTGC
26127841 TGCACAAGCTAAAGAAACAATATCTCACCAGTGATCCAAACATATACTTAGGCGCTACCATCTTA
1 TGCACAAGCTAAAGAAACAATATCTCACCAGTGATCCAAACATATACTTAGGCGCTACCATCTTA
* *
26127906 TTCGAGAGATTATCGA-TCGAGGGGATGTAGAGATATGCAGAGTACCTACAGATGATAACATTGC
66 TTCGAGAGATTATCGACT-GAGGGGATGTAGACATATGCAGAGTACCTACAGATGATAACATTAC
26127970 TGATCCCTTGACCAAGCCTCTGACACAGCAGAAGCATGATCGTCACACTAAGTCACTTGGTATTA
130 TGATCCCTTGACCAAGCCTCTGACACAGCAGAAGCATGATCGTCACACTAAGTCACTTGGTATTA
26128035 GATATATAAGTGATTGGTCTTAGTGC
195 GATATATAAGTGATTGGTCTTAGTGC
26128061 T
1 T
26128062 AGTGGGAGAT
Statistics
Matches: 214, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
219 1 0.00
220 213 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (220 bp):
TGCACAAGCTAAAGAAACAATATCTCACCAGTGATCCAAACATATACTTAGGCGCTACCATCTTA
TTCGAGAGATTATCGACTGAGGGGATGTAGACATATGCAGAGTACCTACAGATGATAACATTACT
GATCCCTTGACCAAGCCTCTGACACAGCAGAAGCATGATCGTCACACTAAGTCACTTGGTATTAG
ATATATAAGTGATTGGTCTTAGTGC
Found at i:26134562 original size:15 final size:15
Alignment explanation
Indices: 26134542--26134576 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26134532 GCTGAATATA
*
26134542 ATAATTATAATAATT
1 ATAATTACAATAATT
*
26134557 ATAATTACCATAATT
1 ATAATTACAATAATT
26134572 ATAAT
1 ATAAT
26134577 ATTGTTTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATTACAATAATT
Found at i:26141809 original size:20 final size:20
Alignment explanation
Indices: 26141784--26141821 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26141774 TATTAAAGGG
* *
26141784 GTGTTTTATGTTTAAAAAAA
1 GTGTTTTAGGGTTAAAAAAA
26141804 GTGTTTTAGGGTTAAAAA
1 GTGTTTTAGGGTTAAAAA
26141822 TTGGGTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (20 bp):
GTGTTTTAGGGTTAAAAAAA
Found at i:26145226 original size:104 final size:105
Alignment explanation
Indices: 26145041--26145249 Score: 402
Period size: 104 Copynumber: 2.0 Consensus size: 105
26145031 GGGTTATGGG
26145041 ATTTAATAAATAAAAGAAAAGAATGAAAATGTGATGAAAAAAAAAGGGGCTTCATTCTTGTCTTC
1 ATTTAATAAATAAAAGAAAAGAATGAAAATGTGATGAAAAAAAAAGGGGCTTCATTCTTGTCTTC
26145106 TTGGCCGAATTGAAGGAAGGAATAGGGGCAAAGAACTTTT
66 TTGGCCGAATTGAAGGAAGGAATAGGGGCAAAGAACTTTT
26145146 ATTTAATAAATAAAAGAAAAGAATGAAAATGTGATG-AAAAAAAAGGGGCTTCATTCTTGTCTTC
1 ATTTAATAAATAAAAGAAAAGAATGAAAATGTGATGAAAAAAAAAGGGGCTTCATTCTTGTCTTC
*
26145210 TTGGCTGAATTGAAGGAAGGAATAGGGGCAAAGAACTTTT
66 TTGGCCGAATTGAAGGAAGGAATAGGGGCAAAGAACTTTT
26145250 GGCCATTTGA
Statistics
Matches: 103, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
104 67 0.65
105 36 0.35
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (105 bp):
ATTTAATAAATAAAAGAAAAGAATGAAAATGTGATGAAAAAAAAAGGGGCTTCATTCTTGTCTTC
TTGGCCGAATTGAAGGAAGGAATAGGGGCAAAGAACTTTT
Found at i:26146368 original size:28 final size:27
Alignment explanation
Indices: 26146311--26146462 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
26146301 TAAATTGTGC
*
26146311 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26146338 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26146366 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26146393 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
26146421 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26146448 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26146463 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26146375 original size:55 final size:55
Alignment explanation
Indices: 26146311--26146462 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
26146301 TAAATTGTGC
*
26146311 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
26146366 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
26146421 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
26146463 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26149483 original size:40 final size:40
Alignment explanation
Indices: 26149428--26149507 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
26149418 TTATTTTCAA
26149428 AAATCGACCTTAAGAGCGGTTATCACCAAATACGGATGCG
1 AAATCGACCTTAAGAGCGGTTATCACCAAATACGGATGCG
26149468 AAATCGACCTTAAGAGCGGTTATCACCAAATACGGATGCG
1 AAATCGACCTTAAGAGCGGTTATCACCAAATACGGATGCG
26149508 TGAGGGAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
AAATCGACCTTAAGAGCGGTTATCACCAAATACGGATGCG
Found at i:26152563 original size:21 final size:21
Alignment explanation
Indices: 26152518--26152580 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
26152508 TTTGAACCAT
* *
26152518 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
26152540 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
26152561 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
26152581 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:26152822 original size:19 final size:17
Alignment explanation
Indices: 26152798--26152842 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
26152788 AAATAGGTAC
26152798 AAAAAAATTCAAAATCGAA
1 AAAAAAATTCAAAA--GAA
*
26152817 AAAAAAATTGAAAAGAA
1 AAAAAAATTCAAAAGAA
26152834 AAAAAAATT
1 AAAAAAATT
26152843 GCATACGGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.48
19 13 0.52
ACGTcount: A:0.73, C:0.04, G:0.07, T:0.16
Consensus pattern (17 bp):
AAAAAAATTCAAAAGAA
Found at i:26152834 original size:17 final size:18
Alignment explanation
Indices: 26152798--26152843 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
26152788 AAATAGGTAC
*
26152798 AAAAAAATTCAAAATCGAA
1 AAAAAAATTGAAAA-CGAA
26152817 AAAAAAATTGAAAA-GAA
1 AAAAAAATTGAAAACGAA
26152834 AAAAAAATTG
1 AAAAAAATTG
26152844 CATACGGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 13 0.50
19 13 0.50
ACGTcount: A:0.72, C:0.04, G:0.09, T:0.15
Consensus pattern (18 bp):
AAAAAAATTGAAAACGAA
Found at i:26155074 original size:20 final size:20
Alignment explanation
Indices: 26155049--26155103 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
26155039 GTGAAAATAC
*
26155049 AAAAGAAAAGAAAAATGAAA
1 AAAAGAAAAGAAAAATCAAA
*
26155069 AAAAG-AAAGAAAATTCAAA
1 AAAAGAAAAGAAAAATCAAA
*
26155088 AAAAGAGAATGAAAAA
1 AAAAGA-AAAGAAAAA
26155104 AAATGAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 17 0.59
20 5 0.17
21 7 0.24
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAGAAAAATCAAA
Found at i:26171360 original size:14 final size:14
Alignment explanation
Indices: 26171317--26171371 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
26171307 ACTCTCCTCA
*
26171317 TTCTTTTCTTTCTTT
1 TTCTTTT-TCTCTTT
* *
26171332 TCCTTTTCACTCTTT
1 TTCTTTT-TCTCTTT
*
26171347 TTGTTTTTCTCTTT
1 TTCTTTTTCTCTTT
26171361 TTCTTTTTCTC
1 TTCTTTTTCTC
26171372 GATCAATAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
14 16 0.48
15 17 0.52
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.73
Consensus pattern (14 bp):
TTCTTTTTCTCTTT
Found at i:26180507 original size:39 final size:40
Alignment explanation
Indices: 26180436--26180579 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 40
26180426 GCTCCTCGTT
* *
26180436 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
26180476 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
26180515 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
26180556 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26180580 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 47 0.52
40 33 0.37
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:26185769 original size:42 final size:42
Alignment explanation
Indices: 26185723--26185804 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
26185713 CATGTGACCT
26185723 AAGTCAATGAGTTACAC-GAGCTGAGACACAGCCGTGTGTCTC
1 AAGTCAATGAGTTACACAG-GCTGAGACACAGCCGTGTGTCTC
* * *
26185765 AAGTCAATGAGTTACACAGGCTGGGACACGGCTGTGTGTC
1 AAGTCAATGAGTTACACAGGCTGAGACACAGCCGTGTGTC
26185805 CCAATTTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (42 bp):
AAGTCAATGAGTTACACAGGCTGAGACACAGCCGTGTGTCTC
Found at i:26188798 original size:27 final size:27
Alignment explanation
Indices: 26188741--26188892 Score: 146
Period size: 27 Copynumber: 5.6 Consensus size: 27
26188731 ACCTCAGGAA
* * **
26188741 AGAAAAGCCTTTTTGGTAAAGACT-GG
1 AGAAAAGCCTTTGTGGCAAACTCTAGG
* *
26188767 AAGAAAAACCTTTGTGGTAAACTCTAGG
1 -AGAAAAGCCTTTGTGGCAAACTCTAGG
26188795 AGAAAAGCCTTTGTGGCAAACTCT-GG
1 AGAAAAGCCTTTGTGGCAAACTCTAGG
* * *
26188821 AAGAATAGCCTTTGTGGCGAACTCTAAG
1 -AGAAAAGCCTTTGTGGCAAACTCTAGG
* * *
26188849 AGAATAGCCTTTGTGGCGAACTCTAAG
1 AGAAAAGCCTTTGTGGCAAACTCTAGG
* *
26188876 AGAATAGCCTTAGTGGC
1 AGAAAAGCCTTTGTGGC
26188893 GAATTATGAA
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
26 2 0.02
27 107 0.96
28 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (27 bp):
AGAAAAGCCTTTGTGGCAAACTCTAGG
Found at i:26188880 original size:54 final size:54
Alignment explanation
Indices: 26188741--26188895 Score: 168
Period size: 54 Copynumber: 2.9 Consensus size: 54
26188731 ACCTCAGGAA
* * ** * * * ** *
26188741 AGAAAAGCCTTTTTGGTAAAGACTGGAAGAAAAACCTTTGTGGTAAACTCTAGG
1 AGAAAAGCCTTTGTGGCAAACTCTAGAAGAATAGCCTTTGTGGCGAACTCTAAG
*
26188795 AGAAAAGCCTTTGTGGCAAACTCTGGAAGAATAGCCTTTGTGGCGAACTCTAAG
1 AGAAAAGCCTTTGTGGCAAACTCTAGAAGAATAGCCTTTGTGGCGAACTCTAAG
* * *
26188849 AGAATAGCCTTTGTGGCGAACTCTA-AGAGAATAGCCTTAGTGGCGAA
1 AGAAAAGCCTTTGTGGCAAACTCTAGA-AGAATAGCCTTTGTGGCGAA
26188896 TTATGAAGGG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 86 0.99
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (54 bp):
AGAAAAGCCTTTGTGGCAAACTCTAGAAGAATAGCCTTTGTGGCGAACTCTAAG
Found at i:26188910 original size:54 final size:54
Alignment explanation
Indices: 26188794--26188922 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
26188784 TAAACTCTAG
* * * *
26188794 GAGAAAAGCCTTTGTGGCAAACTCTGGAAGAATAGCCTTTGTGGCGAACTCTAA
1 GAGAATAGCCTTTGTGGCAAACTCTAGAAGAATAGCCTTAGTGGCGAACTATAA
* *
26188848 GAGAATAGCCTTTGTGGCGAACTCTA-AGAGAATAGCCTTAGTGGCGAATTATGAA
1 GAGAATAGCCTTTGTGGCAAACTCTAGA-AGAATAGCCTTAGTGGCGAACTAT-AA
* *
26188903 G-GGATAGCCTCTGTGGCAAA
1 GAGAATAGCCTTTGTGGCAAA
26188923 TCCTACAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 60 0.94
55 3 0.05
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (54 bp):
GAGAATAGCCTTTGTGGCAAACTCTAGAAGAATAGCCTTAGTGGCGAACTATAA
Found at i:26188919 original size:27 final size:27
Alignment explanation
Indices: 26188775--26188895 Score: 163
Period size: 27 Copynumber: 4.5 Consensus size: 27
26188765 GGAAGAAAAA
** * *
26188775 CCTTTGTGGTAAACTCTAGGAGAAAAG
1 CCTTTGTGGCGAACTCTAAGAGAATAG
* *
26188802 CCTTTGTGGCAAACTCT-GGAAGAATAG
1 CCTTTGTGGCGAACTCTAAG-AGAATAG
26188829 CCTTTGTGGCGAACTCTAAGAGAATAG
1 CCTTTGTGGCGAACTCTAAGAGAATAG
26188856 CCTTTGTGGCGAACTCTAAGAGAATAG
1 CCTTTGTGGCGAACTCTAAGAGAATAG
*
26188883 CCTTAGTGGCGAA
1 CCTTTGTGGCGAA
26188896 TTATGAAGGG
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
26 2 0.02
27 84 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (27 bp):
CCTTTGTGGCGAACTCTAAGAGAATAG
Found at i:26191981 original size:25 final size:25
Alignment explanation
Indices: 26191953--26192019 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
26191943 TCCTGTACAT
* *
26191953 GTATGCTCATACGAGCTGTGAATCG
1 GTATGCTCATACGAGCTGTAAATCA
26191978 GTATGCTC-TCACGAGCTGTAAATCA
1 GTATGCTCAT-ACGAGCTGTAAATCA
* *
26192003 GTAAGCTCATATGAGCT
1 GTATGCTCATACGAGCT
26192020 AAAAATTAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 34 0.94
26 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
GTATGCTCATACGAGCTGTAAATCA
Found at i:26192858 original size:25 final size:25
Alignment explanation
Indices: 26192815--26192868 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
26192805 GTACATGTAT
**
26192815 GCTCATACGAGCTGTAAATCAGTAA
1 GCTCATACGAGCTAAAAATCAGTAA
* **
26192840 GCTCATATGAGCTAAAAATTGGTAA
1 GCTCATACGAGCTAAAAATCAGTAA
26192865 GCTC
1 GCTC
26192869 TCACAAGCTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (25 bp):
GCTCATACGAGCTAAAAATCAGTAA
Found at i:26209342 original size:32 final size:32
Alignment explanation
Indices: 26209272--26209353 Score: 96
Period size: 32 Copynumber: 2.5 Consensus size: 32
26209262 GTTCAGGGAT
*
26209272 GGGATAACCGACGGGGAAAGGGGTTTCGAGATA
1 GGGA-AACCGACGGGGAAAGGGGTTTAGAGATA
* *
26209305 GGGAAATCGATGGGGAAAGGGG-TTAGACGAT-
1 GGGAAACCGACGGGGAAAGGGGTTTAGA-GATA
26209336 GAGGAAACCGACGGGGAA
1 G-GGAAACCGACGGGGAA
26209354 GGGACCAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
31 5 0.12
32 33 0.79
33 4 0.10
ACGTcount: A:0.33, C:0.11, G:0.44, T:0.12
Consensus pattern (32 bp):
GGGAAACCGACGGGGAAAGGGGTTTAGAGATA
Found at i:26210348 original size:18 final size:18
Alignment explanation
Indices: 26210322--26210380 Score: 109
Period size: 18 Copynumber: 3.3 Consensus size: 18
26210312 TACGACCGTT
26210322 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
26210340 TATGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
26210358 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
26210376 TACGG
1 TACGG
26210381 NNNNNNNNNN
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:26214430 original size:15 final size:16
Alignment explanation
Indices: 26214412--26214443 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26214402 ATTACAGTAC
26214412 AAATTAAAA-TAATTA
1 AAATTAAAATTAATTA
26214427 AAATTAAAATTAATTA
1 AAATTAAAATTAATTA
26214443 A
1 A
26214444 CATAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATTAAAATTAATTA
Found at i:26220788 original size:19 final size:20
Alignment explanation
Indices: 26220764--26220820 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 20
26220754 TGCATTGAGA
26220764 TTAATTTCATAATATT-TAT
1 TTAATTTCATAATATTATAT
*
26220783 TTAATTTAATAAATATTATAT
1 TTAATTTCAT-AATATTATAT
26220804 TATAATTATACATAATA
1 T-TAATT-T-CATAATA
26220821 AAGGCTAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 9 0.29
20 6 0.19
21 4 0.13
22 5 0.16
23 5 0.16
24 2 0.06
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAATTTCATAATATTATAT
Found at i:26221883 original size:85 final size:85
Alignment explanation
Indices: 26221779--26221948 Score: 313
Period size: 85 Copynumber: 2.0 Consensus size: 85
26221769 AATTAAAATT
*
26221779 TGACTATTATTATATAATATAAATTTAGAGTGTACGATAAGGACTAAAATTGGAATTTCACTATT
1 TGACTATTATTATATAATATAAATTTAGAGTGTACGATAAGGACTAAAATTGGAATTTCACCATT
*
26221844 TTTTATAAAATGCAAAAAAA
66 TTCTATAAAATGCAAAAAAA
*
26221864 TGACTATTATTATATAATATAAATTTTGAGTGTACGATAAGGACTAAAATTGGAATTTCACCATT
1 TGACTATTATTATATAATATAAATTTAGAGTGTACGATAAGGACTAAAATTGGAATTTCACCATT
26221929 TTCTATAAAATGCAAAAAAA
66 TTCTATAAAATGCAAAAAAA
26221949 AAGAGATGTT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (85 bp):
TGACTATTATTATATAATATAAATTTAGAGTGTACGATAAGGACTAAAATTGGAATTTCACCATT
TTCTATAAAATGCAAAAAAA
Found at i:26222399 original size:15 final size:15
Alignment explanation
Indices: 26222379--26222409 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26222369 AGGGATTGAC
*
26222379 TCAATCCTTTAAGAT
1 TCAATCCCTTAAGAT
26222394 TCAATCCCTTAAGAT
1 TCAATCCCTTAAGAT
26222409 T
1 T
26222410 ACAAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (15 bp):
TCAATCCCTTAAGAT
Found at i:26224258 original size:16 final size:16
Alignment explanation
Indices: 26224181--26224218 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
26224171 ACATGTCATA
26224181 AATACATTTACAATAT
1 AATACATTTACAATAT
26224197 AATACATTTACAATAT
1 AATACATTTACAATAT
*
26224213 GATACA
1 AATACA
26224219 ATATGATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.34
Consensus pattern (16 bp):
AATACATTTACAATAT
Found at i:26228253 original size:5 final size:5
Alignment explanation
Indices: 26228245--26228320 Score: 53
Period size: 5 Copynumber: 14.4 Consensus size: 5
26228235 CCAATTTAAT
* *
26228245 TTTTA TTTTTA TTTTG TTATATA TTTTA TTTTA TTTTA TTTTT TCTTTA
1 TTTTA -TTTTA TTTTA TT-T-TA TTTTA TTTTA TTTTA TTTTA T-TTTA
* * * * *
26228294 TTTTC TTTCA TGTTA ATTAA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
26228321 CTCTCTTCTT
Statistics
Matches: 53, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
5 39 0.74
6 11 0.21
7 3 0.06
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:26228288 original size:17 final size:17
Alignment explanation
Indices: 26228245--26228297 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
26228235 CCAATTTAAT
*
26228245 TTTTA-TTTTTATTTTG
1 TTTTATTTTTTATTTTA
* *
26228261 TTATATATTTTATTTTA
1 TTTTATTTTTTATTTTA
*
26228278 TTTTATTTTTT-CTTTA
1 TTTTATTTTTTATTTTA
26228294 TTTT
1 TTTT
26228298 CTTTCATGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 12 0.40
17 18 0.60
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTTATTTTA
Found at i:26229293 original size:107 final size:108
Alignment explanation
Indices: 26229068--26229301 Score: 316
Period size: 107 Copynumber: 2.2 Consensus size: 108
26229058 GTTAACCGAA
* *
26229068 ATTAAACAAA-AA-ATAATTAATTAAGAGTGTGTTGGGCTGAGTAACTGGGGTGGGATGCTTGGG
1 ATTAAA-AAATAATATAATAAATTAAGAGTATGTTGGGCTGAGTAACTGGGGTGGGATGCTTGGG
*
26229131 TTGTCATTCCACTTTGCATCAAAAGGGCCAATACATTCTTAAAC
65 TTGTCATTCCACTTTGCATCAAAAGGACCAATACATTCTTAAAC
* * * * *
26229175 AAT-ATATATAATATAATAAATTAGGAGTATGTTGGGCTGAGTAACTGGGGTGGGGTGCTT-GGT
1 ATTAAAAAATAATATAATAAATTAAGAGTATGTTGGGCTGAGTAACTGGGGTGGGATGCTTGGGT
* *
26229238 TGTCATTCCA-TTTCGCGTCAAAAGGACCAATACATTCTTAAGC
66 TGTCATTCCACTTT-GCATCAAAAGGACCAATACATTCTTAAAC
*
26229281 ATTAAAAAATAATAAAATAAA
1 ATTAAAAAATAATATAATAAA
26229302 AATAAATAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
105 5 0.05
106 44 0.40
107 60 0.55
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (108 bp):
ATTAAAAAATAATATAATAAATTAAGAGTATGTTGGGCTGAGTAACTGGGGTGGGATGCTTGGGT
TGTCATTCCACTTTGCATCAAAAGGACCAATACATTCTTAAAC
Found at i:26233069 original size:22 final size:23
Alignment explanation
Indices: 26233022--26233062 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26233012 TATCAAACCT
26233022 TTTGTTTATAGAAAAATATAAAA
1 TTTGTTTATAGAAAAATATAAAA
26233045 TTTGTTT-T-GAAAAA-ATAA
1 TTTGTTTATAGAAAAATATAA
26233063 TTAATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 1 0.06
23 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (23 bp):
TTTGTTTATAGAAAAATATAAAA
Found at i:26233581 original size:2 final size:2
Alignment explanation
Indices: 26233574--26233603 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26233564 CAGTGCTCAG
26233574 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
26233604 TCTCTCTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26233608 original size:2 final size:2
Alignment explanation
Indices: 26233603--26233643 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
26233593 CACACACACA
26233603 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
26233644 AACCCTTTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:26233929 original size:16 final size:16
Alignment explanation
Indices: 26233900--26233935 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26233890 AGTGAAGATT
26233900 GAAA-AAAAAAGAGAG
1 GAAATAAAAAAGAGAG
*
26233915 GAAATAAAAAGGAGAG
1 GAAATAAAAAAGAGAG
26233931 GAAAT
1 GAAAT
26233936 CGAAGGTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.06
Consensus pattern (16 bp):
GAAATAAAAAAGAGAG
Found at i:26233974 original size:12 final size:12
Alignment explanation
Indices: 26233957--26233990 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
26233947 GGTCTTCTCC
26233957 TTTTCGCTTTCG
1 TTTTCGCTTTCG
26233969 TTTTCGCTTTCG
1 TTTTCGCTTTCG
26233981 TTTTCGCTTT
1 TTTTCGCTTT
26233991 GCATGCGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.24, G:0.15, T:0.62
Consensus pattern (12 bp):
TTTTCGCTTTCG
Found at i:26234914 original size:92 final size:92
Alignment explanation
Indices: 26234743--26235828 Score: 1414
Period size: 92 Copynumber: 11.8 Consensus size: 92
26234733 AAACTATATT
* * * *
26234743 TTTAGGTTTTAATTTTGGTAAAATTAGATTATAGATTTAAATAGGATTTGATTTGAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
* * * *
26234808 AAAATTATATTTTTAGGTTCTAGTAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
* * *
26234835 TTTATATTGTAATTTTGGTAAAATTAGTTTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
* * *
26234900 AAAATTAGAATTTTAGGTTCTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
* * * * * *
26234927 CTTAGATAATAATTTTGGAAAAAATAGATAATAGGATTAAATAGGATTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
** * * *
26234992 AGTATTATATTTTTAGGTTCTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
26235019 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
*
26235084 AAAATTAGATTTTTAGGTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
* * * *
26235111 CTTAGATCATAATTTTGGAAAAATTAGATAATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26235176 AAAATTAGATTTTTAGCTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
* * * * ** ** * * *
26235203 TTTAGATTTTAATTTTGGAAAAAATTATATTAGAATTTTAGTTAGAATTTGATTTTAAGTTCTAT
1 TTTAGATTATAATTTTGG-TAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAG
*** * *
26235268 TAAAATTAGATCGATAGGTTTTAATA-A
65 TAAAATTAGATTTTTAGCTTTTAATAGG
* * *** * * * * * ** * ** *
26235295 ATTAAATTATAAGTTTAAATGAGATTCGTTTGTAATTTTTAATAAAAATTAGATTTTAAGTTGTA
1 TTTAGATTATAA-TTTTGGTAAAATTAGATTATAGGTTTAAAT-AGGATTTGATTTTAAGTTGTA
26235360 GTAAAATTAGATTTTTAGCTTTTAATAGG
64 GTAAAATTAGATTTTTAGCTTTTAATAGG
*
26235389 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAA-AGGGTTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26235453 AAAATTAGATTTTTAGCTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
*
26235480 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAA-AGGGTTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26235544 AAAATTAGATTTTTAGCTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
*
26235571 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAA-AGGGTTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26235635 AAAATTAGATTTTTAGCTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
*
26235662 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAA-AGGGTTTGATTTTAAGTTGTAGT
1 TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
26235726 AAAATTAGATTTTTAGCTTTTAATAGG
66 AAAATTAGATTTTTAGCTTTTAATAGG
* * * * * *
26235753 TTTAGATTTTAATTTTGGAAAAAAATT--ATTATA-ATTATAAGTAGAATTTGATTTTAAGTTTT
1 TTTAGATTATAATTTTGG--TAAAATTAGATTATAGGTT-TAAATAGGATTTGATTTTAAGTTGT
26235815 AGTAAAATTAGATT
63 AGTAAAATTAGATT
26235829 GATAGATTTT
Statistics
Matches: 881, Mismatches: 105, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
90 2 0.00
91 345 0.39
92 399 0.45
93 125 0.14
94 10 0.01
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (92 bp):
TTTAGATTATAATTTTGGTAAAATTAGATTATAGGTTTAAATAGGATTTGATTTTAAGTTGTAGT
AAAATTAGATTTTTAGCTTTTAATAGG
Found at i:26235818 original size:23 final size:22
Alignment explanation
Indices: 26235792--26235859 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
26235782 TATAATTATA
*
26235792 AGTAGAATTTGATTTTAAGTTTT
1 AGTA-AATTAGATTTTAAGTTTT
*
26235815 AGTAAAATTAGA-TTGATAGATTTT
1 AGT-AAATTAGATTTTA-AG-TTTT
*
26235839 AGTAAATTAGATTATAAGTTT
1 AGTAAATTAGATTTTAAGTTT
26235860 AAATAAGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
22 6 0.16
23 21 0.57
24 10 0.27
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (22 bp):
AGTAAATTAGATTTTAAGTTTT
Found at i:26239386 original size:13 final size:14
Alignment explanation
Indices: 26239368--26239396 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26239358 ATTTGAACTG
26239368 AACTAACT-AAATT
1 AACTAACTAAAATT
26239381 AACTAACTAAAATT
1 AACTAACTAAAATT
26239395 AA
1 AA
26239397 ATAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.28
Consensus pattern (14 bp):
AACTAACTAAAATT
Found at i:26239470 original size:20 final size:21
Alignment explanation
Indices: 26239445--26239486 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
26239435 AATAGAAAAA
26239445 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
*
26239465 TGGAAATGAGCTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
26239486 T
1 T
26239487 CAACAAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:26244098 original size:13 final size:14
Alignment explanation
Indices: 26244080--26244108 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26244070 ATTTGAACTG
26244080 AACTAACT-AAATT
1 AACTAACTAAAATT
26244093 AACTAACTAAAATT
1 AACTAACTAAAATT
26244107 AA
1 AA
26244109 ATAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.28
Consensus pattern (14 bp):
AACTAACTAAAATT
Found at i:26244182 original size:20 final size:21
Alignment explanation
Indices: 26244157--26244198 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
26244147 AATAGAAAAA
26244157 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
*
26244177 TGGAAATGAGCTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
26244198 T
1 T
26244199 CAACAAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:26248934 original size:44 final size:44
Alignment explanation
Indices: 26248871--26248960 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
26248861 AGATAGAGTA
26248871 AGTTGAAATTCGTTAATTCACTGACTGCAAGTATTGGTAGCGTG
1 AGTTGAAATTCGTTAATTCACTGACTGCAAGTATTGGTAGCGTG
*
26248915 AGTTGAAATTCGTTAATTCACTGACTGCTAGTATTGGTAGCGTG
1 AGTTGAAATTCGTTAATTCACTGACTGCAAGTATTGGTAGCGTG
26248959 AG
1 AG
26248961 AATTGTTGAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (44 bp):
AGTTGAAATTCGTTAATTCACTGACTGCAAGTATTGGTAGCGTG
Found at i:26258703 original size:20 final size:20
Alignment explanation
Indices: 26258644--26258742 Score: 110
Period size: 20 Copynumber: 5.0 Consensus size: 20
26258634 TTGTATGGGA
*
26258644 TTTGCACTTCGGTGCCTCTC
1 TTTGCACTTCGGTGCCTCTG
26258664 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
* *
26258684 TTTGCATTTCGGTGCATCTG
1 TTTGCACTTCGGTGCCTCTG
**
26258704 TTCACACATTC-GTGCCTCTG
1 TTTGCAC-TTCGGTGCCTCTG
* * *
26258724 TCTACACTTCGGTGACTCT
1 TTTGCACTTCGGTGCCTCT
26258743 ATTATGCATC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
19 3 0.04
20 61 0.91
21 3 0.04
ACGTcount: A:0.10, C:0.30, G:0.20, T:0.39
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:26274023 original size:14 final size:14
Alignment explanation
Indices: 26274004--26274030 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26273994 CATGAAATAG
26274004 AAAAACCTCACAAC
1 AAAAACCTCACAAC
26274018 AAAAACCTCACAA
1 AAAAACCTCACAA
26274031 ATCTCTCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAAACCTCACAAC
Found at i:26279648 original size:25 final size:25
Alignment explanation
Indices: 26279614--26279698 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
26279604 GCGAGCACAC
*
26279614 TACAGCTCGTATGAGCTTCTCGATT
1 TACAGCTCGTATGAGCTTCCCGATT
26279639 TACAGCTCGTATGAGCTTCCCGATT
1 TACAGCTCGTATGAGCTTCCCGATT
* *
26279664 TGCAGTTCGTATGAGCTTCCCGATT
1 TACAGCTCGTATGAGCTTCCCGATT
* *
26279689 CATAGCTCGT
1 TACAGCTCGT
26279699 GAGAGCATAC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
TACAGCTCGTATGAGCTTCCCGATT
Found at i:26279704 original size:25 final size:25
Alignment explanation
Indices: 26279615--26279730 Score: 119
Period size: 25 Copynumber: 4.7 Consensus size: 25
26279605 CGAGCACACT
* *
26279615 ACAGCTCGTATGAGCTTCTCGATTT
1 ACAGCTCGTATGAGCTTCCCGATTC
*
26279640 ACAGCTCGTATGAGCTTCCCGATTT
1 ACAGCTCGTATGAGCTTCCCGATTC
* *
26279665 GCAGTTCGTATGAGCTTCCCGATTC
1 ACAGCTCGTATGAGCTTCCCGATTC
* * * *
26279690 ATAGCTCGTGA-GAGCAT-ACTATTC
1 ACAGCTCGT-ATGAGCTTCCCGATTC
*
26279714 ATAGCTCGTATGAGCTT
1 ACAGCTCGTATGAGCTT
26279731 ACATGAATAT
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
23 1 0.01
24 19 0.24
25 57 0.73
26 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (25 bp):
ACAGCTCGTATGAGCTTCCCGATTC
Found at i:26281031 original size:88 final size:88
Alignment explanation
Indices: 26280877--26281054 Score: 311
Period size: 88 Copynumber: 2.0 Consensus size: 88
26280867 CCAATAGTGT
26280877 AAATATTTTAAGAGTGGAATAATCTAGAAACTAAGGAAAATGGATGAATTAGGACCAAATTAAAA
1 AAATATTTTAAGAGTGGAATAATCTAGAAACTAAGGAAAATGGATGAATTAGGACCAAATTAAAA
* * *
26280942 AGGTGAAGAATTTTGAGGGACTA
66 AGATAAAGAATTCTGAGGGACTA
*
26280965 AAATATTTTAAGAGTGGAATAATCTAGAAACTAAGGAAAATGGATGAATTAGGACCAAATTGAAA
1 AAATATTTTAAGAGTGGAATAATCTAGAAACTAAGGAAAATGGATGAATTAGGACCAAATTAAAA
*
26281030 AGATAAAGAATTCTGAGGGATTA
66 AGATAAAGAATTCTGAGGGACTA
26281053 AA
1 AA
26281055 TTGCAATTTT
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.25
Consensus pattern (88 bp):
AAATATTTTAAGAGTGGAATAATCTAGAAACTAAGGAAAATGGATGAATTAGGACCAAATTAAAA
AGATAAAGAATTCTGAGGGACTA
Found at i:26284020 original size:50 final size:50
Alignment explanation
Indices: 26283839--26284012 Score: 267
Period size: 50 Copynumber: 3.5 Consensus size: 50
26283829 TATTGAAATT
*
26283839 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
26283889 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * * *
26283939 ATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
**
26283989 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCATGTAAGACCAT
26284013 ATTTGGGATA
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 112 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:26320251 original size:50 final size:50
Alignment explanation
Indices: 26320123--26320369 Score: 230
Period size: 50 Copynumber: 4.8 Consensus size: 50
26320113 ATTTGGGCAA
* *
26320123 AGAGATCCCATGTAAGACCTTGTCTGGGACATGGCATTGGCATCATTGAGACTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AG---ATG
*
26320179 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* ** * ** *
26320229 AGAGGTCCCCCGTAAGACCATGTCTGGGACGTGGCACGGGCACCAATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* * * **
26320279 AGA-ACTCCCATGTAAGACCATATCTGGGATATGGCATTGGGAGTACAG--G
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AGATG
* * * *
26320328 AAACATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26320370 TGTTATTATC
Statistics
Matches: 159, Mismatches: 29, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
49 35 0.22
50 79 0.50
51 1 0.01
53 2 0.01
56 42 0.26
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:26326187 original size:18 final size:18
Alignment explanation
Indices: 26326166--26326205 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26326156 TTCTTGTCAA
26326166 AAAATAAATAAA-TATTGT
1 AAAATAAATAAATTA-TGT
*
26326184 AAAATAATTAAATTATGT
1 AAAATAAATAAATTATGT
26326202 AAAA
1 AAAA
26326206 AATATGAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAATAAATAAATTATGT
Found at i:26326253 original size:22 final size:23
Alignment explanation
Indices: 26326221--26326263 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26326211 GAACATGATA
26326221 AATTTTAATTAATTTT-ATAGTT
1 AATTTTAATTAATTTTGATAGTT
* *
26326243 AATTTTGATTATTTTTGATAG
1 AATTTTAATTAATTTTGATAG
26326264 ATTCGCACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAGTT
Found at i:26332351 original size:50 final size:50
Alignment explanation
Indices: 26332226--26332517 Score: 266
Period size: 50 Copynumber: 5.7 Consensus size: 50
26332216 GAATATAACA
* * * * * * *
26332226 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGA-TATTTCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATAGG
* * * *
26332275 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGG
* * * * *
26332325 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGG
* * * *
26332375 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTT-TCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATATAGG
* * * *
26332425 TGCCAATGTCATGTCCCAGACAAGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCAT-A--T--A-GG
*
26332481 TGCCAATGCCATGTCCCAGAGATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26332518 TCTCTTTACC
Statistics
Matches: 198, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
49 39 0.20
50 121 0.61
51 2 0.01
53 1 0.01
56 35 0.18
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATAGG
Found at i:26332400 original size:100 final size:102
Alignment explanation
Indices: 26332275--26332517 Score: 294
Period size: 100 Copynumber: 2.4 Consensus size: 102
26332265 TTTCTTGTAC
* * * * *
26332275 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGA-GTTCTCATATAGGTGCCCATGCCATGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTT-TCATATAGGTGCCAATGCCATGT
* *
26332339 CCCAGACATGGTCTTACAGGGGACCTCTC-ATCTC-GG
65 CCCAGACAAGGTCTTACAGGGGACCTCTCAATCTCAGA
* * * * *
26332375 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTTTCATCTCGGTGCCAATGTCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATATAGGTGCCAATGCCATGTC
*
26332440 CCAGACAAGGTCTTACATGGGACCTCTCATAATCTCAATGA
66 CCAGACAAGGTCTTACAGGGGACCTCTC--AATCTC-A-GA
*
26332481 TGCCAATGCCATGTCCCAGAGATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26332518 TCTCTTTACC
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
100 78 0.65
101 2 0.02
103 5 0.04
106 35 0.29
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (102 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATATAGGTGCCAATGCCATGTC
CCAGACAAGGTCTTACAGGGGACCTCTCAATCTCAGA
Found at i:26334549 original size:14 final size:14
Alignment explanation
Indices: 26334526--26334556 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26334516 TGTCGCGTTC
*
26334526 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
26334540 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
26334554 TTA
1 TTA
26334557 AAACAATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:26342592 original size:12 final size:12
Alignment explanation
Indices: 26342575--26342603 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26342565 GATTCAATAT
26342575 ATGTGAAGATGC
1 ATGTGAAGATGC
26342587 ATGTGAAGATGC
1 ATGTGAAGATGC
26342599 ATGTG
1 ATGTG
26342604 CATTTGGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.07, G:0.34, T:0.28
Consensus pattern (12 bp):
ATGTGAAGATGC
Found at i:26349215 original size:12 final size:12
Alignment explanation
Indices: 26349200--26349227 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26349190 TACTTACTCT
26349200 CTTACTTGTTTA
1 CTTACTTGTTTA
26349212 CTTACTTGTTTA
1 CTTACTTGTTTA
26349224 CTTA
1 CTTA
26349228 AATAACTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.57
Consensus pattern (12 bp):
CTTACTTGTTTA
Found at i:26349495 original size:49 final size:50
Alignment explanation
Indices: 26349429--26349558 Score: 147
Period size: 49 Copynumber: 2.6 Consensus size: 50
26349419 GATAATAACA
* * * *
26349429 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGATGTT-TCCTGT-AC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATAGGA-GTTCTCATATCAC
* * * *
26349478 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCAG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATAGGAGTTCTCATATCAC
* *
26349528 TGCCCATGCCATGTCCCAGACATGGTCTTAC
1 TGCCAATGCCATATCCCAGACATGGTCTTAC
26349559 GGGGGACCTC
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
48 3 0.04
49 36 0.54
50 28 0.42
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATAGGAGTTCTCATATCAC
Found at i:26349615 original size:50 final size:50
Alignment explanation
Indices: 26349429--26349667 Score: 187
Period size: 50 Copynumber: 4.7 Consensus size: 50
26349419 GATAATAACA
* * * *
26349429 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGA--TGTT-TCCTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTAT-CT-TAG
* * * ** * * *
26349478 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTAG
* ** *
26349528 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTTATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTAG
* * * *
26349578 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTTAGAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT---A--TC-TTAG
* *
26349634 TGCCAATGCCATGTCCTAGACACGGTCTTACATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
26349668 AGATCTCATC
Statistics
Matches: 149, Mismatches: 32, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
49 32 0.21
50 79 0.53
51 3 0.02
52 1 0.01
53 1 0.01
55 2 0.01
56 31 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTAG
Found at i:26352733 original size:4 final size:4
Alignment explanation
Indices: 26352716--26352782 Score: 52
Period size: 4 Copynumber: 17.5 Consensus size: 4
26352706 CCTTTCTTTC
* * * * *
26352716 TTTA TTTC TCTA TTTA TTTA -TTA TTTA TTATT TTTA GTTA TTT- TCT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA
26352762 TTTA TTTA TTTA -TTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TT
26352783 ATCAAATTCT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
3 10 0.20
4 36 0.73
5 3 0.06
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:26352741 original size:7 final size:7
Alignment explanation
Indices: 26352729--26352784 Score: 53
Period size: 7 Copynumber: 7.6 Consensus size: 7
26352719 ATTTCTCTAT
26352729 TTATTTA
1 TTATTTA
26352736 TTATTTA
1 TTATTTA
26352743 TTATTTTTA
1 TTA--TTTA
26352752 GTTATTT-
1 -TTATTTA
26352759 TCT-TTTA
1 T-TATTTA
26352766 TTTATTTA
1 -TTATTTA
26352774 TTATTTA
1 TTATTTA
26352781 TTAT
1 TTAT
26352785 CAAATTCTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
6 4 0.10
7 23 0.55
8 8 0.19
9 4 0.10
10 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:26352793 original size:31 final size:30
Alignment explanation
Indices: 26352732--26352794 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
26352722 TCTCTATTTA
* **
26352732 TTTATTATTTATTATTTTTAGTTATTTTCT
1 TTTATTATTTATTATTTTTAGTCAAATTCT
26352762 TTTATTTATTTATTATTTATTA-TCAAATTCT
1 TTTA-TTATTTATTATTT-TTAGTCAAATTCT
26352793 TT
1 TT
26352795 GGCTTCTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 4 0.14
31 21 0.75
32 3 0.11
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (30 bp):
TTTATTATTTATTATTTTTAGTCAAATTCT
Found at i:26354476 original size:6 final size:6
Alignment explanation
Indices: 26354465--26354503 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
26354455 TTTTCTTTTC
* *
26354465 TTTTAT TTTTAT TTTTAT TTTTAT GTTTAT TATTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
26354504 CTTAGACTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:26355494 original size:17 final size:17
Alignment explanation
Indices: 26355471--26355508 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26355461 TTCTTATTGT
*
26355471 AAAAAAAAGAGAAAAAAG
1 AAAAAAAA-CGAAAAAAG
26355489 AAAAAAAACGAAAAAAG
1 AAAAAAAACGAAAAAAG
26355506 AAA
1 AAA
26355509 TCAAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.84, C:0.03, G:0.13, T:0.00
Consensus pattern (17 bp):
AAAAAAAACGAAAAAAG
Found at i:26356469 original size:30 final size:30
Alignment explanation
Indices: 26356433--26356489 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
26356423 CGGGCACTTT
*
26356433 CACACGGCCTGGCCACATGCCCGTGTGAGC
1 CACACGGCCTGGCCACATGCCCATGTGAGC
*
26356463 CACACGGGCTGGCCACATGCCCATGTG
1 CACACGGCCTGGCCACATGCCCATGTG
26356490 CCAACCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.18, C:0.39, G:0.30, T:0.14
Consensus pattern (30 bp):
CACACGGCCTGGCCACATGCCCATGTGAGC
Found at i:26357335 original size:14 final size:14
Alignment explanation
Indices: 26357312--26357342 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26357302 TGTCGCATTC
*
26357312 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
26357326 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
26357340 TTA
1 TTA
26357343 AAACAATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:26359585 original size:22 final size:24
Alignment explanation
Indices: 26359560--26359613 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
26359550 AACGCATTTG
26359560 GACAACT-TAAAT-ACAACATTCA
1 GACAACTATAAATCACAACATTCA
* *
26359582 GAC-ATTATAAATCACAACCTTCA
1 GACAACTATAAATCACAACATTCA
26359605 GAC-ACTATA
1 GACAACTATA
26359614 GTTTGCAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 8 0.30
23 17 0.63
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (24 bp):
GACAACTATAAATCACAACATTCA
Found at i:26359604 original size:23 final size:22
Alignment explanation
Indices: 26359567--26359613 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
26359557 TTGGACAACT
*
26359567 TAAATACAACATTCAGACATTA
1 TAAATACAACATTCAGACACTA
*
26359589 TAAATCACAACCTTCAGACACTA
1 TAAAT-ACAACATTCAGACACTA
26359612 TA
1 TA
26359614 GTTTGCAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (22 bp):
TAAATACAACATTCAGACACTA
Found at i:26360374 original size:4 final size:4
Alignment explanation
Indices: 26360365--26360394 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
26360355 AAGTTTTATT
*
26360365 TTTA TTTA TTTA TTTA TTTA TATA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
26360395 ACTTAGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:26368393 original size:27 final size:27
Alignment explanation
Indices: 26368363--26368429 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
26368353 ATTTTGCCAT
26368363 AAAGGC-ATTTCTTTTAGAGTTCAACAC
1 AAAGGCTA-TTCTTTTAGAGTTCAACAC
*
26368390 AAAGGCTATTCTTTTAGAGTTCACCAC
1 AAAGGCTATTCTTTTAGAGTTCAACAC
*
26368417 AATGGCTATTCTT
1 AAAGGCTATTCTT
26368430 AGTTGTCATG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (27 bp):
AAAGGCTATTCTTTTAGAGTTCAACAC
Found at i:26379644 original size:35 final size:35
Alignment explanation
Indices: 26379605--26379673 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
26379595 AGATGAGCTC
26379605 AATTAACTAAGATGAGTAATTTATTCCAACAACTT
1 AATTAACTAAGATGAGTAATTTATTCCAACAACTT
*
26379640 AATTAACTAAGATGAGTAATTTATTCCAGCAACT
1 AATTAACTAAGATGAGTAATTTATTCCAACAACT
26379674 AAATACTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.33
Consensus pattern (35 bp):
AATTAACTAAGATGAGTAATTTATTCCAACAACTT
Found at i:26379655 original size:54 final size:54
Alignment explanation
Indices: 26379536--26379655 Score: 204
Period size: 54 Copynumber: 2.2 Consensus size: 54
26379526 CAACTAAGTG
* * * *
26379536 AACTAAGCTGAACTTAATTAACTAAGATTAGTAATTTATTCCAACAACTTAATT
1 AACTAAGATGAGCTCAATTAACTAAGATGAGTAATTTATTCCAACAACTTAATT
26379590 AACTAAGATGAGCTCAATTAACTAAGATGAGTAATTTATTCCAACAACTTAATT
1 AACTAAGATGAGCTCAATTAACTAAGATGAGTAATTTATTCCAACAACTTAATT
26379644 AACTAAGATGAG
1 AACTAAGATGAG
26379656 TAATTTATTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (54 bp):
AACTAAGATGAGCTCAATTAACTAAGATGAGTAATTTATTCCAACAACTTAATT
Found at i:26385666 original size:11 final size:11
Alignment explanation
Indices: 26385650--26385683 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
26385640 TAGTAGTTTC
26385650 TTCAAAAAAAA
1 TTCAAAAAAAA
26385661 TTCAAAAAAAAA
1 TTC-AAAAAAAA
26385673 TTCAAAAAAAA
1 TTCAAAAAAAA
26385684 AATTGGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:26385687 original size:13 final size:12
Alignment explanation
Indices: 26385653--26385684 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26385643 TAGTTTCTTC
26385653 AAAAAAAATTCA
1 AAAAAAAATTCA
26385665 AAAAAAAATTCA
1 AAAAAAAATTCA
26385677 AAAAAAAA
1 AAAAAAAA
26385685 ATTGGTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:26385748 original size:17 final size:16
Alignment explanation
Indices: 26385724--26385766 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
26385714 GATATCAAGT
*
26385724 TGAAAAAAAAATTTCG
1 TGAAAAAAAAAATTCG
26385740 TGAAAAAAAAAATTCG
1 TGAAAAAAAAAATTCG
26385756 TGAAAAAAAAA
1 TGAAAAAAAAA
26385767 GAAGAAGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.65, C:0.05, G:0.12, T:0.19
Consensus pattern (16 bp):
TGAAAAAAAAAATTCG
Found at i:26388859 original size:67 final size:67
Alignment explanation
Indices: 26388750--26388887 Score: 267
Period size: 67 Copynumber: 2.1 Consensus size: 67
26388740 GCGAATGGAC
*
26388750 TAGAGGTGGACCAAGAGAAGATTAAAGCAATACAAGATTGGCCACGACCGAATAACATCAGCCAA
1 TAGAGGTGGACCAAGAGAAGATTAAAGCAATACAAGAATGGCCACGACCGAATAACATCAGCCAA
26388815 GT
66 GT
26388817 TAGAGGTGGACCAAGAGAAGATTAAAGCAATACAAGAATGGCCACGACCGAATAACATCAGCCAA
1 TAGAGGTGGACCAAGAGAAGATTAAAGCAATACAAGAATGGCCACGACCGAATAACATCAGCCAA
26388882 GT
66 GT
26388884 TAGA
1 TAGA
26388888 AGTTTTCATG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.14
Consensus pattern (67 bp):
TAGAGGTGGACCAAGAGAAGATTAAAGCAATACAAGAATGGCCACGACCGAATAACATCAGCCAA
GT
Found at i:26389226 original size:95 final size:95
Alignment explanation
Indices: 26389063--26389251 Score: 369
Period size: 95 Copynumber: 2.0 Consensus size: 95
26389053 TTATGTTTGT
*
26389063 CGAATTTTAACAAAATTTTCGAGGTAGAATGTGATGCTTCTGGAATAGGAATAGGTGCGGTTTTA
1 CGAATTTTAACAAAATTTTCGAGGTAGAATGTGATGCTTCTGGAATAGGAATAGGTGCAGTTTTA
26389128 ACGCAAGATGGGCGACCGGTGGCTTATTTC
66 ACGCAAGATGGGCGACCGGTGGCTTATTTC
26389158 CGAATTTTAACAAAATTTTCGAGGTAGAATGTGATGCTTCTGGAATAGGAATAGGTGCAGTTTTA
1 CGAATTTTAACAAAATTTTCGAGGTAGAATGTGATGCTTCTGGAATAGGAATAGGTGCAGTTTTA
26389223 ACGCAAGATGGGCGACCGGTGGCTTATTT
66 ACGCAAGATGGGCGACCGGTGGCTTATTT
26389252 TAGCGAGAAA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (95 bp):
CGAATTTTAACAAAATTTTCGAGGTAGAATGTGATGCTTCTGGAATAGGAATAGGTGCAGTTTTA
ACGCAAGATGGGCGACCGGTGGCTTATTTC
Found at i:26389609 original size:104 final size:104
Alignment explanation
Indices: 26389425--26389632 Score: 398
Period size: 104 Copynumber: 2.0 Consensus size: 104
26389415 CTTAACAAAA
*
26389425 CGACATGCAAAATGGGTAGAATTCTTAGAATCCTTTCCATATGTGATTAAGTATAAGCAAGGTAA
1 CGACATACAAAATGGGTAGAATTCTTAGAATCCTTTCCATATGTGATTAAGTATAAGCAAGGTAA
*
26389490 GGAAAATATCGTTGCAGATGCTTTATCGCGAAGGTATGC
66 GGAAAATATCATTGCAGATGCTTTATCGCGAAGGTATGC
26389529 CGACATACAAAATGGGTAGAATTCTTAGAATCCTTTCCATATGTGATTAAGTATAAGCAAGGTAA
1 CGACATACAAAATGGGTAGAATTCTTAGAATCCTTTCCATATGTGATTAAGTATAAGCAAGGTAA
26389594 GGAAAATATCATTGCAGATGCTTTATCGCGAAGGTATGC
66 GGAAAATATCATTGCAGATGCTTTATCGCGAAGGTATGC
26389633 TCTTTTAAAT
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 102 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (104 bp):
CGACATACAAAATGGGTAGAATTCTTAGAATCCTTTCCATATGTGATTAAGTATAAGCAAGGTAA
GGAAAATATCATTGCAGATGCTTTATCGCGAAGGTATGC
Found at i:26393216 original size:50 final size:50
Alignment explanation
Indices: 26393150--26393347 Score: 204
Period size: 51 Copynumber: 3.9 Consensus size: 50
26393140 AAAGTGAAAG
* *
26393150 TGAT-GGTGACATGTGTAGTACTATGTGCAGGCTACTATGTATACCAGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAA
* *
26393199 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC-GAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAA
* * * * * *
26393248 TAGTTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-A
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAA
* * * * *
26393299 TGGTAATGGTCACATTTGTAGTACTATTTTCAGGCTACTATGTGAACCA
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCA
26393348 AACATCATTG
Statistics
Matches: 121, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 9 0.07
50 39 0.32
51 72 0.60
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAA
Found at i:26393435 original size:45 final size:45
Alignment explanation
Indices: 26393344--26393436 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
26393334 TACTATGTGA
* * * *
26393344 ACCAAACATCATTGATTAGTAAGGTGGTTTCTATGTGTCGATTCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTCTCGAATCC
*
26393389 ACCAGACATCATTGATTAATAAGGTGGTTGCTATGTACT-GAATCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGT-CTCGAATCC
26393434 ACC
1 ACC
26393437 GAGTATCTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 41 0.98
46 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (45 bp):
ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTCTCGAATCC
Found at i:26406995 original size:18 final size:19
Alignment explanation
Indices: 26406974--26407013 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
26406964 TTAAAGCATG
26406974 TAATAAAATTAGACAT-AT
1 TAATAAAATTAGACATAAT
* *
26406992 TAATGAATTTAGACATAAT
1 TAATAAAATTAGACATAAT
26407011 TAA
1 TAA
26407014 AACACTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (19 bp):
TAATAAAATTAGACATAAT
Found at i:26408889 original size:18 final size:18
Alignment explanation
Indices: 26408868--26408902 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26408858 TTTTTCTTTT
26408868 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
26408886 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
26408903 TTTCTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:26408899 original size:6 final size:6
Alignment explanation
Indices: 26408890--26408974 Score: 55
Period size: 6 Copynumber: 14.0 Consensus size: 6
26408880 TCAATCTCAA
* * ** *
26408890 TTTCTT TTTCAAT TTTCTT TTTCTC TCACTT TTT-TGA TTTCTT TTTCTT
1 TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT TTTCT-T TTTCTT TTTCTT
* ** * *
26408939 TTGCAA TTTCTT TTTCTT TTTCAT TTTCAT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
26408975 CTTTTTCATT
Statistics
Matches: 58, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
5 1 0.02
6 51 0.88
7 6 0.10
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTCTT
Found at i:26408939 original size:18 final size:18
Alignment explanation
Indices: 26408926--26408974 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
26408916 CACTTTTTTG
*
26408926 ATTTCTTTTTCTTTTGCA
1 ATTTCTTTTTCTTTTTCA
26408944 ATTTCTTTTTCTTTTTCA
1 ATTTCTTTTTCTTTTTCA
* *
26408962 TTTTCATTTTCTT
1 ATTTCTTTTTCTT
26408975 CTTTTTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.10, C:0.16, G:0.02, T:0.71
Consensus pattern (18 bp):
ATTTCTTTTTCTTTTTCA
Found at i:26408954 original size:24 final size:24
Alignment explanation
Indices: 26408927--26408986 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 24
26408917 ACTTTTTTGA
26408927 TTTCTTTTTC-TTTTGCAATTTCTT
1 TTTCTTTTTCATTTT-CAATTTCTT
26408951 TTTCTTTTTCATTTTC-A-TT-TT
1 TTTCTTTTTCATTTTCAATTTCTT
*
26408972 CTTCTTTTTCATTTT
1 TTTCTTTTTCATTTT
26408987 TATTACAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
21 16 0.47
22 2 0.06
23 1 0.03
24 11 0.32
25 4 0.12
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTCTTTTTCATTTTCAATTTCTT
Found at i:26409864 original size:21 final size:19
Alignment explanation
Indices: 26409834--26409874 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
26409824 TTACATGTAA
*
26409834 TTTAAATACAACTTCTTTTT
1 TTTAAATACAAATT-TTTTT
26409854 TTTAATATACAAATTTTTTT
1 TTTAA-ATACAAATTTTTTT
26409874 T
1 T
26409875 ACAAATCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTAAATACAAATTTTTTT
Found at i:26411267 original size:19 final size:17
Alignment explanation
Indices: 26411243--26411281 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
26411233 GCTTTTATTA
26411243 AATTAATTAATCTTAAGCT
1 AATTAATTAAT-TTAA-CT
*
26411262 AATTAATTTATTTAACT
1 AATTAATTAATTTAACT
26411279 AAT
1 AAT
26411282 CAACAACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.46
Consensus pattern (17 bp):
AATTAATTAATTTAACT
Found at i:26415160 original size:27 final size:27
Alignment explanation
Indices: 26415130--26415230 Score: 139
Period size: 27 Copynumber: 3.6 Consensus size: 27
26415120 TTAAACAACT
26415130 TATGAAAGGAATGCCTTTGTGGCAATA
1 TATGAAAGGAATGCCTTTGTGGCAATA
* * *
26415157 TATGAAAAGAATGTCTTTGTGACAATA
1 TATGAAAGGAATGCCTTTGTGGCAATA
26415184 TATGAAAGGAATGCCTTTGTGGCAATA
1 TATGAAAGGAATGCCTTTGTGGCAATA
*
26415211 TACGATGAAAGGAATACCTT
1 T---ATGAAAGGAATGCCTT
26415231 GACAGCGTAC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
27 49 0.77
30 15 0.23
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (27 bp):
TATGAAAGGAATGCCTTTGTGGCAATA
Found at i:26416377 original size:48 final size:48
Alignment explanation
Indices: 26416311--26416406 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
26416301 TTGTATCTAG
* * *
26416311 ATTCACATGGTAAGCTATGGAATGCCTCAGGAAATGTATCAGGAATGC
1 ATTCACATGATAAACTATGGAATGCCTCAGGAAATGTATCAAGAATGC
*
26416359 ATTCACATGATAAACTATGGAATGCCTCAGGAAATGTCTCAAGAATGC
1 ATTCACATGATAAACTATGGAATGCCTCAGGAAATGTATCAAGAATGC
26416407 CCTCATATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (48 bp):
ATTCACATGATAAACTATGGAATGCCTCAGGAAATGTATCAAGAATGC
Found at i:26421683 original size:20 final size:21
Alignment explanation
Indices: 26421644--26421683 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26421634 AGATCCTCGG
*
26421644 CTTTCCTCGTCGCTTCTCCCA
1 CTTTCCTCGTCGCATCTCCCA
*
26421665 CTTTCTTCGTC-CATCTCCC
1 CTTTCCTCGTCGCATCTCCC
26421684 TAAGACATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.05, C:0.47, G:0.07, T:0.40
Consensus pattern (21 bp):
CTTTCCTCGTCGCATCTCCCA
Found at i:26426717 original size:67 final size:68
Alignment explanation
Indices: 26426634--26426766 Score: 173
Period size: 67 Copynumber: 2.0 Consensus size: 68
26426624 GTTTAATAGT
* * * * *
26426634 TTAATATTAAATTTAATTTACTACTTATCTTA-AT-AATATTTTATTAATTTAATATTAAAGTGA
1 TTAAGATTAAATTTAATATAATACTTATC-AAGATAAATA-TATATTAATTTAATATTAAAGTGA
26426697 TTATC
64 TTATC
*
26426702 TTAAGATTAAA-TTAATATAATATTTATCAAGATAAATATATATTAATTTAATATTAAAGTGATT
1 TTAAGATTAAATTTAATATAATACTTATCAAGATAAATATATATTAATTTAATATTAAAGTGATT
26426766 A
66 A
26426767 CGTTTAACCA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
66 1 0.02
67 42 0.74
68 14 0.25
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (68 bp):
TTAAGATTAAATTTAATATAATACTTATCAAGATAAATATATATTAATTTAATATTAAAGTGATT
ATC
Found at i:26431376 original size:21 final size:21
Alignment explanation
Indices: 26431352--26431395 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
26431342 CTAGACTTGT
*
26431352 AGGGAAAGGCTACACACAAAA
1 AGGGAAAGACTACACACAAAA
*
26431373 AGGGAAAGACTACACACAGAA
1 AGGGAAAGACTACACACAAAA
26431394 AG
1 AG
26431396 AAGACATCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.25, T:0.05
Consensus pattern (21 bp):
AGGGAAAGACTACACACAAAA
Found at i:26434616 original size:50 final size:50
Alignment explanation
Indices: 26434523--26434765 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
26434513 TTTCTTGTAC
* * * **
26434523 TGCCAATGGCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
26434573 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26434623 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
26434673 TGCCAACGCCATGTCCCAGACATGGTTTTACATTAGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
26434729 TGCCAATGCCATGTCCAAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26434766 TCACTTTACC
Statistics
Matches: 164, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 130 0.79
53 1 0.01
56 33 0.20
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26437432 original size:24 final size:24
Alignment explanation
Indices: 26437400--26437448 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26437390 TGAGAAGTCA
26437400 TTCCATTATCTAAGAATCAATTCT
1 TTCCATTATCTAAGAATCAATTCT
26437424 TTCCATTATCTAAGAATCAATTCT
1 TTCCATTATCTAAGAATCAATTCT
26437448 T
1 T
26437449 CGACTCAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (24 bp):
TTCCATTATCTAAGAATCAATTCT
Found at i:26451138 original size:43 final size:43
Alignment explanation
Indices: 26451077--26451164 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
26451067 TCCAGAGAAA
26451077 GGTTTCATGGCACGTATTCGTCAGGTTGCTGAAACTCTCAATT
1 GGTTTCATGGCACGTATTCGTCAGGTTGCTGAAACTCTCAATT
* *
26451120 GGTTTTATGGCGCGTATTCGTCAGGTTGCTGAAACTCTCAATT
1 GGTTTCATGGCACGTATTCGTCAGGTTGCTGAAACTCTCAATT
26451163 GG
1 GG
26451165 GTGTTGTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (43 bp):
GGTTTCATGGCACGTATTCGTCAGGTTGCTGAAACTCTCAATT
Found at i:26455711 original size:15 final size:15
Alignment explanation
Indices: 26455691--26455719 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26455681 CGGTGTTTTG
26455691 TTGATTGATAACACA
1 TTGATTGATAACACA
26455706 TTGATTGATAACAC
1 TTGATTGATAACAC
26455720 GGTGTGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (15 bp):
TTGATTGATAACACA
Found at i:26458091 original size:15 final size:15
Alignment explanation
Indices: 26458073--26458111 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26458063 TGGTGGTAGA
26458073 GGTGCTGGTCAACGT
1 GGTGCTGGTCAACGT
* *
26458088 GGTGCTGCTCAAGGT
1 GGTGCTGGTCAACGT
*
26458103 GGTGATGGT
1 GGTGCTGGT
26458112 GGTCTAGCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.13, C:0.15, G:0.44, T:0.28
Consensus pattern (15 bp):
GGTGCTGGTCAACGT
Found at i:26471170 original size:50 final size:53
Alignment explanation
Indices: 26471066--26471194 Score: 156
Period size: 56 Copynumber: 2.4 Consensus size: 53
26471056 GGGAAGAGAC
**
26471066 CCCACGTAAGACCATGTCTGGGACATGACATTGGCATTATTGAGGTTATCAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGACATTGG-A-TACCGAGG-TATCAGAGGT
* * *
26471122 CCCATGTAAGACCATGTCTGGGACATGGCATTGG-TACCGA-G-ATGAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGACATTGGATACCGAGGTATCAGAGGT
*
26471172 CCCCCGTAAGACCATGTCTGGGA
1 CCCACGTAAGACCATGTCTGGGA
26471195 TGATACGACC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
50 29 0.44
52 1 0.02
53 4 0.06
56 32 0.48
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (53 bp):
CCCACGTAAGACCATGTCTGGGACATGACATTGGATACCGAGGTATCAGAGGT
Found at i:26473178 original size:23 final size:22
Alignment explanation
Indices: 26473142--26473194 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
26473132 ACGGTATTGT
* * *
26473142 AAAAAAAATAAAAAAGAACTTG
1 AAAAAAAATAAAAAAAAAATTC
*
26473164 AAAAAAAATTCAAAAAAAAATTC
1 AAAAAAAA-TAAAAAAAAAATTC
26473187 AAAAAAAA
1 AAAAAAAA
26473195 AGTTTGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.13
Consensus pattern (22 bp):
AAAAAAAATAAAAAAAAAATTC
Found at i:26473179 original size:12 final size:12
Alignment explanation
Indices: 26473164--26473195 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26473154 AAAGAACTTG
26473164 AAAAAAAATTCA
1 AAAAAAAATTCA
26473176 AAAAAAAATTCA
1 AAAAAAAATTCA
26473188 AAAAAAAA
1 AAAAAAAA
26473196 GTTTGTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:26474182 original size:15 final size:16
Alignment explanation
Indices: 26474162--26474193 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26474152 AGAAAATGAA
26474162 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
26474177 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
26474193 A
1 A
26474194 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:26474238 original size:41 final size:41
Alignment explanation
Indices: 26474184--26474266 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
26474174 ATGAAAGAAA
26474184 AAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAG
1 AAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAG
26474225 AAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAG
1 AAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAG
26474266 A
1 A
26474267 TTGAGAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (41 bp):
AAGAAGATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAG
Found at i:26474251 original size:23 final size:23
Alignment explanation
Indices: 26474182--26474252 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
26474172 AAATGAAAGA
26474182 AAAAGAAGATGAGTGTGAGATAG
1 AAAAGAAGATGAGTGTGAGATAG
*
26474205 AAAAGAA-A--A-T-TGA-AAATG
1 AAAAGAAGATGAGTGTGAGATA-G
*
26474223 AGAAGAAGATGAGTGTGAGATAG
1 AAAAGAAGATGAGTGTGAGATAG
26474246 AAAAGAA
1 AAAAGAA
26474253 AATTGAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
17 2 0.05
18 10 0.27
19 2 0.05
20 1 0.03
21 1 0.03
22 2 0.05
23 17 0.46
24 2 0.05
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (23 bp):
AAAAGAAGATGAGTGTGAGATAG
Found at i:26477392 original size:21 final size:21
Alignment explanation
Indices: 26477368--26477407 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26477358 CTCTTTGAAT
26477368 CAATTTGAGCCTTTATTCTAC
1 CAATTTGAGCCTTTATTCTAC
26477389 CAATTTGAGCCTTTATTCT
1 CAATTTGAGCCTTTATTCT
26477408 TTCTTTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (21 bp):
CAATTTGAGCCTTTATTCTAC
Found at i:26477849 original size:20 final size:20
Alignment explanation
Indices: 26477824--26477862 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26477814 TGAATTATTT
26477824 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAA-CAGAGTAAGTAAAC
*
26477844 AAGTAATAGAGTAAGTAAA
1 AAGTAACAGAGTAAGTAAA
26477863 AAATAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (20 bp):
AAGTAACAGAGTAAGTAAAC
Found at i:26483725 original size:46 final size:43
Alignment explanation
Indices: 26483652--26483750 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
26483642 TACTATGTGA
*
26483652 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* *
26483695 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
26483741 ACCGTGTATC
1 ACCG-GTATC
26483751 TGTTATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.23
45 2 0.04
46 27 0.56
47 3 0.06
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:26490334 original size:26 final size:26
Alignment explanation
Indices: 26490305--26490365 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
26490295 TACATCTTTG
**
26490305 CATTCATTTTTGAGCCAA-TATTTTTT
1 CATTC-TTTTTGAAACAATTATTTTTT
*
26490331 CATTCTTTTTGAAATAATTATTTTTT
1 CATTCTTTTTGAAACAATTATTTTTT
26490357 CATTCTTTT
1 CATTCTTTT
26490366 GGAGTTTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.23, C:0.13, G:0.05, T:0.59
Consensus pattern (26 bp):
CATTCTTTTTGAAACAATTATTTTTT
Done.