Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 84 of 185
Found at i:26493417 original size:40 final size:40
Alignment explanation
Indices: 26493362--26493549 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
26493352 GAGCATTGGA
*
26493362 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
26493402 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* * *
26493442 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
26493482 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
26493522 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
26493550 ATGTGTTTGC
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:26507201 original size:101 final size:99
Alignment explanation
Indices: 26507023--26507221 Score: 326
Period size: 101 Copynumber: 2.0 Consensus size: 99
26507013 TGTTTTAAGC
*
26507023 AAATTAAAATCATGCTCTTTGTGTCGCTATGGAGCCGAAATTGCAAGAATGATAAATGTCTTGTG
1 AAATCAAAATCATGCTCTTTGTGTCGCTATGGAGCCGAAATTGCAAGAATGATAAATGTCTTGTG
*
26507088 TTTGAGTTTTGCTAACGAGAATGAAATACGAATA
66 TTTGAGTTTTGCTAACGAAAATGAAATACGAATA
* * *
26507122 AAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATGATAAGTGTCTTG
1 AAATCAAAATCATGCTC-TT-TGTGTCGCTATGGAGCCGAAATTGCAAGAATGATAAATGTCTTG
*
26507187 TGTTTGAGTTTTGCTAATGAAAATGAAATACGAAT
64 TGTTTGAGTTTTGCTAACGAAAATGAAATACGAAT
26507222 GTGTCATGAT
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 16 0.17
100 2 0.02
101 74 0.80
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (99 bp):
AAATCAAAATCATGCTCTTTGTGTCGCTATGGAGCCGAAATTGCAAGAATGATAAATGTCTTGTG
TTTGAGTTTTGCTAACGAAAATGAAATACGAATA
Found at i:26507402 original size:79 final size:81
Alignment explanation
Indices: 26507266--26507450 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26507256 TCGAATGATG
* *
26507266 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26507330 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26507345 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26507407 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26507425 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26507451 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26507464 original size:40 final size:40
Alignment explanation
Indices: 26507267--26507450 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26507257 CGAATGATGT
* * * *
26507267 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26507307 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26507347 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26507385 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26507426 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26507451 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26507472 original size:79 final size:79
Alignment explanation
Indices: 26507319--26507483 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26507309 GGACTAAGAT
* * **
26507319 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26507384 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26507398 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26507461 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26507477 CCGAAGG
1 CCGAAGG
26507484 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26516265 original size:18 final size:18
Alignment explanation
Indices: 26516244--26516282 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26516234 ATTGCATGGG
26516244 ATGCAT-GGTTCGCATGAA
1 ATGCATGGGTT-GCATGAA
*
26516262 ATGCATGGGTTGCATGGA
1 ATGCATGGGTTGCATGAA
26516280 ATG
1 ATG
26516283 TGTGAAATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.28
Consensus pattern (18 bp):
ATGCATGGGTTGCATGAA
Found at i:26524046 original size:12 final size:13
Alignment explanation
Indices: 26524029--26524058 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26524019 CTCATACATG
26524029 AATAAATAAA-GC
1 AATAAATAAATGC
26524041 AATAAATAAATGC
1 AATAAATAAATGC
26524054 AATAA
1 AATAA
26524059 TTATAGTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:26525874 original size:84 final size:83
Alignment explanation
Indices: 26525730--26525891 Score: 315
Period size: 84 Copynumber: 1.9 Consensus size: 83
26525720 GATTCTAATG
26525730 TTACAAACAATGAGTGGCATCTAGCAATGCATCATTGCTACCTAAGTTACAAGAAGTCATGATTC
1 TTACAAACAATGAGTGGCATCTAGCAATGCATCATTGCTACCTAAGTTACAAGAAGTCATGATTC
26525795 GACATAACCTTTTGTGAT
66 GACATAACCTTTTGTGAT
26525813 TTANCAAACAATGAGTGGCATCTAGCAATGCATCATTGCTACCTAAGTTACAAGAAGTCATGATT
1 TTA-CAAACAATGAGTGGCATCTAGCAATGCATCATTGCTACCTAAGTTACAAGAAGTCATGATT
26525878 CGACATAACCTTTT
65 CGACATAACCTTTT
26525892 TATGATTAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 3 0.04
84 75 0.96
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (83 bp):
TTACAAACAATGAGTGGCATCTAGCAATGCATCATTGCTACCTAAGTTACAAGAAGTCATGATTC
GACATAACCTTTTGTGAT
Found at i:26529402 original size:18 final size:18
Alignment explanation
Indices: 26529362--26529408 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
26529352 GCATGGTTCA
*
26529362 CATGAAATGCATGGGTTG
1 CATGGAATGCATGGGTTG
**
26529380 CATGGAATGCATGTTTTG
1 CATGGAATGCATGGGTTG
*
26529398 TATGGAATGCA
1 CATGGAATGCA
26529409 CGAAGTGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.32
Consensus pattern (18 bp):
CATGGAATGCATGGGTTG
Found at i:26532315 original size:124 final size:124
Alignment explanation
Indices: 26532095--26532342 Score: 487
Period size: 124 Copynumber: 2.0 Consensus size: 124
26532085 TCACCAAAGC
26532095 GAGATAATCACCCATGCTTAGATTTGATTAAGTTAGAATTCAGTTTTTCGAAAATCCTTTTATTA
1 GAGATAATCACCCATGCTTAGATTTGATTAAGTTAGAATTCAGTTTTTCGAAAATCCTTTTATTA
*
26532160 TTTTTATTTTTATTTCACTAGCTATAAAAACCCCCCAAAATATTTATTTTCATGTTTTA
66 TTTTTATTTTTATTTCACTAGCTATAAAAACCCCCCAAAATATTTACTTTCATGTTTTA
26532219 GAGATAATCACCCATGCTTAGATTTGATTAAGTTAGAATTCAGTTTTTCGAAAATCCTTTTATTA
1 GAGATAATCACCCATGCTTAGATTTGATTAAGTTAGAATTCAGTTTTTCGAAAATCCTTTTATTA
26532284 TTTTTATTTTTATTTCACTAGCTATAAAAACCCCCCAAAATATTTACTTTCATGTTTTA
66 TTTTTATTTTTATTTCACTAGCTATAAAAACCCCCCAAAATATTTACTTTCATGTTTTA
26532343 TCATACAATA
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (124 bp):
GAGATAATCACCCATGCTTAGATTTGATTAAGTTAGAATTCAGTTTTTCGAAAATCCTTTTATTA
TTTTTATTTTTATTTCACTAGCTATAAAAACCCCCCAAAATATTTACTTTCATGTTTTA
Found at i:26533326 original size:190 final size:190
Alignment explanation
Indices: 26533003--26533382 Score: 751
Period size: 190 Copynumber: 2.0 Consensus size: 190
26532993 AATTCTCAAA
*
26533003 TTCCATCGAGAAGTTTAAAAAGTTGCCTCTAGGCTATCCTAGAGATTTTAACCTGACGTTTGTTC
1 TTCCATCGAGAAGTCTAAAAAGTTGCCTCTAGGCTATCCTAGAGATTTTAACCTGACGTTTGTTC
26533068 ATTATTGAATGAATCGAGACTTCCTTCAGTGAATGAACATATCAGTGTCTTCTTATCTTAGGCCC
66 ATTATTGAATGAATCGAGACTTCCTTCAGTGAATGAACATATCAGTGTCTTCTTATCTTAGGCCC
26533133 TTACACCTTGTACCTCTTTAACCACTTCTCACCTAAACTAAGCCTACTCCATGGCATTTT
131 TTACACCTTGTACCTCTTTAACCACTTCTCACCTAAACTAAGCCTACTCCATGGCATTTT
26533193 TTCCATCGAGAAGTCTAAAAAGTTGCCTCTAGGCTATCCTAGAGATTTTAACCTGACGTTTGTTC
1 TTCCATCGAGAAGTCTAAAAAGTTGCCTCTAGGCTATCCTAGAGATTTTAACCTGACGTTTGTTC
26533258 ATTATTGAATGAATCGAGACTTCCTTCAGTGAATGAACATATCAGTGTCTTCTTATCTTAGGCCC
66 ATTATTGAATGAATCGAGACTTCCTTCAGTGAATGAACATATCAGTGTCTTCTTATCTTAGGCCC
26533323 TTACACCTTGTACCTCTTTAACCACTTCTCACCTAAACTAAGCCTACTCCATGGCATTTT
131 TTACACCTTGTACCTCTTTAACCACTTCTCACCTAAACTAAGCCTACTCCATGGCATTTT
26533383 CTAAGGAATC
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
190 189 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.35
Consensus pattern (190 bp):
TTCCATCGAGAAGTCTAAAAAGTTGCCTCTAGGCTATCCTAGAGATTTTAACCTGACGTTTGTTC
ATTATTGAATGAATCGAGACTTCCTTCAGTGAATGAACATATCAGTGTCTTCTTATCTTAGGCCC
TTACACCTTGTACCTCTTTAACCACTTCTCACCTAAACTAAGCCTACTCCATGGCATTTT
Found at i:26536205 original size:76 final size:76
Alignment explanation
Indices: 26536079--26536223 Score: 184
Period size: 76 Copynumber: 1.9 Consensus size: 76
26536069 GAAAACGTAA
* * * * * * * *
26536079 CAGCTATAAAGAGTAGAATACAAACGTGAAGAAAAGGCAGAGACATCTATCCTGGATTCACGTAC
1 CAGCTAAAAAGAGCAGAACACAAACGTGAAGAAAAGGAAAAGAAATCTATCCTAGATTCACGAAC
26536144 GATCAGGTTAG
66 GATCAGGTTAG
* *
26536155 CAGCTAAAAAGAGCAGAACACAGACGTGAA-AAGAGGGAAAAGAAATCTATCCTAGATTCACGAA
1 CAGCTAAAAAGAGCAGAACACAAACGTGAAGAA-AAGGAAAAGAAATCTATCCTAGATTCACGAA
26536219 CGATC
65 CGATC
26536224 GAAAAATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
75 2 0.03
76 56 0.97
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.17
Consensus pattern (76 bp):
CAGCTAAAAAGAGCAGAACACAAACGTGAAGAAAAGGAAAAGAAATCTATCCTAGATTCACGAAC
GATCAGGTTAG
Found at i:26537251 original size:37 final size:37
Alignment explanation
Indices: 26537210--26537284 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
26537200 TTCATTTTAA
*
26537210 TCCATAGCATTTAATATGGCTCAACTCTATTTCCTTT
1 TCCATAGCATTTAATATAGCTCAACTCTATTTCCTTT
* *
26537247 TCCATAGCATTTAATATAGCTCAGCTTTATTTCCTTT
1 TCCATAGCATTTAATATAGCTCAACTCTATTTCCTTT
26537284 T
1 T
26537285 TCTTAGTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (37 bp):
TCCATAGCATTTAATATAGCTCAACTCTATTTCCTTT
Found at i:26537916 original size:19 final size:19
Alignment explanation
Indices: 26537892--26537937 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
26537882 TGATTTATTC
26537892 TAAGATTTATCCACCTAAA
1 TAAGATTTATCCACCTAAA
26537911 TAAGATTTATCCACCTAAA
1 TAAGATTTATCCACCTAAA
26537930 TAA-ATTTA
1 TAAGATTTA
26537938 AAATATATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.35
Consensus pattern (19 bp):
TAAGATTTATCCACCTAAA
Found at i:26539420 original size:81 final size:80
Alignment explanation
Indices: 26539286--26539439 Score: 254
Period size: 81 Copynumber: 1.9 Consensus size: 80
26539276 CAGCACACTG
* * * * *
26539286 TTTTTTTTCCTACAGGTAATTCCATTGTTTCCCATGTACCTGTTTTTTCAAGAGCGCGCATCTTC
1 TTTTTTTCCCTACAGGTAATTCCACTATTTCCCATGTACCTGTTTTTTCAAGAGCGCACATCTCC
26539351 TCTAAAATGCCCACA
66 TCTAAAATGCCCACA
26539366 TTTTTTTCCCCTACAGGTAATTCCACTATTTCCCATGTACCTGTTTTTTCAAGAGCGCACATCTC
1 TTTTTTT-CCCTACAGGTAATTCCACTATTTCCCATGTACCTGTTTTTTCAAGAGCGCACATCTC
26539431 CTCTAAAAT
65 CTCTAAAAT
26539440 AACCTCCTTC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 7 0.10
81 61 0.90
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (80 bp):
TTTTTTTCCCTACAGGTAATTCCACTATTTCCCATGTACCTGTTTTTTCAAGAGCGCACATCTCC
TCTAAAATGCCCACA
Found at i:26542570 original size:19 final size:19
Alignment explanation
Indices: 26542546--26542592 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
26542536 TGATTTATTC
*
26542546 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTAACTAAA
26542565 TAAGATTTATCTAACTAAA
1 TAAGATTTATCTAACTAAA
26542584 TAAGATTTA
1 TAAGATTTA
26542593 AAATATATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (19 bp):
TAAGATTTATCTAACTAAA
Found at i:26542652 original size:102 final size:102
Alignment explanation
Indices: 26542532--26542737 Score: 412
Period size: 102 Copynumber: 2.0 Consensus size: 102
26542522 TAGAATATTT
26542532 CAAATGATTTATTCTAAGATTTATCTACCTAAATAAGATTTATCTAACTAAATAAGATTTAAAAT
1 CAAATGATTTATTCTAAGATTTATCTACCTAAATAAGATTTATCTAACTAAATAAGATTTAAAAT
26542597 ATATCCCCAAAATATATGGGTTTCACATATTTCAACA
66 ATATCCCCAAAATATATGGGTTTCACATATTTCAACA
26542634 CAAATGATTTATTCTAAGATTTATCTACCTAAATAAGATTTATCTAACTAAATAAGATTTAAAAT
1 CAAATGATTTATTCTAAGATTTATCTACCTAAATAAGATTTATCTAACTAAATAAGATTTAAAAT
26542699 ATATCCCCAAAATATATGGGTTTCACATATTTCAACA
66 ATATCCCCAAAATATATGGGTTTCACATATTTCAACA
26542736 CA
1 CA
26542738 TATAGTATGT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 104 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (102 bp):
CAAATGATTTATTCTAAGATTTATCTACCTAAATAAGATTTATCTAACTAAATAAGATTTAAAAT
ATATCCCCAAAATATATGGGTTTCACATATTTCAACA
Found at i:26542672 original size:19 final size:19
Alignment explanation
Indices: 26542648--26542694 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
26542638 TGATTTATTC
*
26542648 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTAACTAAA
26542667 TAAGATTTATCTAACTAAA
1 TAAGATTTATCTAACTAAA
26542686 TAAGATTTA
1 TAAGATTTA
26542695 AAATATATCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (19 bp):
TAAGATTTATCTAACTAAA
Found at i:26546015 original size:12 final size:12
Alignment explanation
Indices: 26545994--26546025 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
26545984 CACAAGTTAT
26545994 AAAACTATACTTA
1 AAAAC-ATACTTA
26546007 AAAACATACTTA
1 AAAACATACTTA
26546019 AAAACAT
1 AAAACAT
26546026 CAACTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAACATACTTA
Found at i:26546698 original size:27 final size:27
Alignment explanation
Indices: 26546662--26546717 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
26546652 GACTAGTGAA
* * *
26546662 CCTCAGTTCGCAGCTTAACTGGCAAAC
1 CCTCAATTCGCAACTCAACTGGCAAAC
26546689 CCTCAATTCGCAACTCAACTGGCAAAC
1 CCTCAATTCGCAACTCAACTGGCAAAC
26546716 CC
1 CC
26546718 ACTTGTAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.38, G:0.14, T:0.20
Consensus pattern (27 bp):
CCTCAATTCGCAACTCAACTGGCAAAC
Found at i:26548385 original size:16 final size:17
Alignment explanation
Indices: 26548354--26548392 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
26548344 TTTAAAATAA
26548354 ATATATTTTAGCAATTTT
1 ATATATTTTA-CAATTTT
26548372 ATATATTTTA-AATTTT
1 ATATATTTTACAATTTT
*
26548388 TTATA
1 ATATA
26548393 AAATATGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
18 10 0.50
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATATTTTACAATTTT
Found at i:26548485 original size:19 final size:20
Alignment explanation
Indices: 26548437--26548492 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
26548427 TATAAAATAT
*
26548437 AAATATAATAAAATATTTTAA
1 AAATAT-ATAAAATATTTGAA
* *
26548458 AAGTGTATAAAAT-TTTGAA
1 AAATATATAAAATATTTGAA
26548477 AAATATATAAAATATT
1 AAATATATAAAATATT
26548493 ATAAATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 16 0.55
20 9 0.31
21 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
AAATATATAAAATATTTGAA
Found at i:26548487 original size:29 final size:29
Alignment explanation
Indices: 26548467--26548525 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
26548457 AAAGTGTATA
26548467 AAATTT-TGAAAAATATATAAAATATTAT
1 AAATTTATGAAAAATATATAAAATATTAT
*
26548495 AAATTTATGATAAATATAT-AAATA-TAT
1 AAATTTATGAAAAATATATAAAATATTAT
26548522 AAAT
1 AAAT
26548526 CAACTAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 7 0.24
28 11 0.38
29 11 0.38
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (29 bp):
AAATTTATGAAAAATATATAAAATATTAT
Found at i:26548515 original size:8 final size:8
Alignment explanation
Indices: 26548477--26548551 Score: 60
Period size: 8 Copynumber: 8.4 Consensus size: 8
26548467 AAATTTTGAA
26548477 AAATATAT
1 AAATATAT
26548485 AAAATATTAT
1 -AAATA-TAT
26548495 AAATTTATGAT
1 AAA--TAT-AT
26548506 AAATATAT
1 AAATATAT
26548514 AAATATAT
1 AAATATAT
*
26548522 AAATCAACTAA
1 AAAT--A-TAT
*
26548533 AAATTTAT
1 AAATATAT
26548541 AAATATAT
1 AAATATAT
26548549 AAA
1 AAA
26548552 AGAACTACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
8 26 0.47
9 11 0.20
10 5 0.09
11 13 0.24
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (8 bp):
AAATATAT
Found at i:26548522 original size:27 final size:27
Alignment explanation
Indices: 26548463--26548551 Score: 94
Period size: 27 Copynumber: 3.3 Consensus size: 27
26548453 TTTAAAAGTG
26548463 TATA-AAATTT-TGAAAAATATATAAAA
1 TATATAAATTTATGAAAAATATAT-AAA
*
26548489 TATTATAAATTTATGATAAATATATAAA
1 TA-TATAAATTTATGAAAAATATATAAA
** *
26548517 TATATAAATCAACT-AAAAATTTATAAA
1 TATATAAATTTA-TGAAAAATATATAAA
26548544 TATATAAA
1 TATATAAA
26548552 AGAACTACAA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 2 0.04
27 29 0.54
28 12 0.22
29 11 0.20
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (27 bp):
TATATAAATTTATGAAAAATATATAAA
Found at i:26548557 original size:27 final size:28
Alignment explanation
Indices: 26548506--26548563 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
26548496 AATTTATGAT
*
26548506 AAATATATAAATATATAAATCAACTA-A
1 AAATATATAAATATATAAAACAACTACA
* *
26548533 AAATTTATAAATATATAAAAGAACTACA
1 AAATATATAAATATATAAAACAACTACA
26548561 AAA
1 AAA
26548564 CACGTCTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.28
Consensus pattern (28 bp):
AAATATATAAATATATAAAACAACTACA
Found at i:26550384 original size:17 final size:17
Alignment explanation
Indices: 26550362--26550409 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
26550352 TACAACCTAG
*
26550362 CACATGGTCGTGTGGGT
1 CACATGGCCGTGTGGGT
26550379 CACATGGCCGTGTGGGT
1 CACATGGCCGTGTGGGT
* *
26550396 CGCATGGCTGTGTG
1 CACATGGCCGTGTG
26550410 AATGGATCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.10, C:0.21, G:0.42, T:0.27
Consensus pattern (17 bp):
CACATGGCCGTGTGGGT
Found at i:26560618 original size:79 final size:81
Alignment explanation
Indices: 26560482--26560666 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
26560472 TTGAATGATG
*
26560482 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26560546 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26560561 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26560623 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26560641 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26560667 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26560680 original size:40 final size:40
Alignment explanation
Indices: 26560483--26560666 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
26560473 TGAATGATGT
* * * *
26560483 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26560523 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26560563 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26560601 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26560642 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26560667 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26560688 original size:79 final size:79
Alignment explanation
Indices: 26560535--26560699 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
26560525 GGACTAAGAT
* **
26560535 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26560600 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26560614 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26560677 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26560693 CCGAAGG
1 CCGAAGG
26560700 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26562679 original size:162 final size:162
Alignment explanation
Indices: 26562412--26562726 Score: 456
Period size: 162 Copynumber: 1.9 Consensus size: 162
26562402 CATTTTGTTG
* * *
26562412 ATCCTTTAGCACAGCCCTGGTATTATCCCCCGATGTAAACTTCTTTACAACCTAAAACACGAAAT
1 ATCCTTTAGCACAGCCCTGGCATTATCCCCAGATGTAAACTTCTTTACAAACTAAAACACGAAAT
*
26562477 AACCTTCATAATTTCATAATTACTTAGTGAATTAAACCTTAAGTACCTAATTCATTACATCTAAG
66 AACCTTCATAATTTCATAATAACTTAGTGAATTAAACCTTAAGTACCTAATTCATTACATCTAAG
*
26562542 CATAATAGACGCTTCGCATGTCCATCTTACCA
131 CATAATAGACACTTCGCATGTCCATCTTACCA
* * * * * *
26562574 ATCCTTTAGCACAGCTCTGGCATTGTCCCTCAG-TGCT-AACTTCTTTGCAAATTGAAACATGAA
1 ATCCTTTAGCACAGCCCTGGCATTATCCC-CAGATG-TAAACTTCTTTACAAACTAAAACACGAA
* *
26562637 ATAACCTTCATAAGTTT-ATAATAACTTAGTGAATTAAACCTTAAGTACCTGATTCATTACGTCT
64 ATAACCTTCATAA-TTTCATAATAACTTAGTGAATTAAACCTTAAGTACCTAATTCATTACATCT
*
26562701 AAGCATAATAGACACTTTGCATGTCC
128 AAGCATAATAGACACTTCGCATGTCC
26562727 TTCATGTGTC
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
162 130 0.96
163 6 0.04
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.32
Consensus pattern (162 bp):
ATCCTTTAGCACAGCCCTGGCATTATCCCCAGATGTAAACTTCTTTACAAACTAAAACACGAAAT
AACCTTCATAATTTCATAATAACTTAGTGAATTAAACCTTAAGTACCTAATTCATTACATCTAAG
CATAATAGACACTTCGCATGTCCATCTTACCA
Found at i:26563484 original size:27 final size:27
Alignment explanation
Indices: 26563454--26563560 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
26563444 ACATAGGTTT
* *
26563454 TCCTTTCAGAGATTTGCCACAAAGGCG
1 TCCTTTAAGAGATTCGCCACAAAGGCG
* * *
26563481 TCCTTTAAGAGGTTCGCTACAAAGGCT
1 TCCTTTAAGAGATTCGCCACAAAGGCG
* ** *
26563508 TACCTTTTTAA-AGTTTTTCCACAAAGGCAA
1 T-CC--TTTAAGAGATTCGCCACAAAGGC-G
* *
26563538 TCCTTTAAGAGGTTCACCACAAA
1 TCCTTTAAGAGATTCGCCACAAA
26563561 TGCTTACCTT
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
27 28 0.45
28 13 0.21
29 15 0.24
30 6 0.10
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (27 bp):
TCCTTTAAGAGATTCGCCACAAAGGCG
Found at i:26563547 original size:57 final size:58
Alignment explanation
Indices: 26563470--26563593 Score: 164
Period size: 57 Copynumber: 2.2 Consensus size: 58
26563460 CAGAGATTTG
* * * *
26563470 CCACAAAGGCGTCCTTTAAGAGGTTCGCTACAAAGGCTTACCTTT-TTAAAG-TTTTT
1 CCACAAAGGCATCCTTTAAGAGGTTCACCACAAAGGCTTACCTTTAATAAAGATTTTT
* *
26563526 CCACAAAGGCAATCCTTTAAGAGGTTCACCACAAATGCTTACCTTTAATAGAGATTTTT
1 CCACAAAGGC-ATCCTTTAAGAGGTTCACCACAAAGGCTTACCTTTAATAAAGATTTTT
26563585 -CACAAAGGC
1 CCACAAAGGC
26563594 GTGTCCTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
56 10 0.17
57 31 0.53
58 13 0.22
59 5 0.08
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (58 bp):
CCACAAAGGCATCCTTTAAGAGGTTCACCACAAAGGCTTACCTTTAATAAAGATTTTT
Found at i:26563570 original size:28 final size:28
Alignment explanation
Indices: 26563470--26563573 Score: 88
Period size: 28 Copynumber: 3.7 Consensus size: 28
26563460 CAGAGATTTG
* *
26563470 CCACAAAGGCGT-CCTTTAAGAGGTTCG
1 CCACAAAGGCTTACCTTTAAGAGGTTCA
* * **
26563497 CTACAAAGGCTTACCTTTTTAA-AGTTTTT
1 CCACAAAGGCTTACC--TTTAAGAGGTTCA
*
26563526 CCACAAAGGC-AATCCTTTAAGAGGTTCA
1 CCACAAAGGCTTA-CCTTTAAGAGGTTCA
*
26563554 CCACAAATGCTTACCTTTAA
1 CCACAAAGGCTTACCTTTAA
26563574 TAGAGATTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
27 15 0.25
28 23 0.39
29 16 0.27
30 5 0.08
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (28 bp):
CCACAAAGGCTTACCTTTAAGAGGTTCA
Found at i:26565799 original size:16 final size:14
Alignment explanation
Indices: 26565780--26565852 Score: 60
Period size: 17 Copynumber: 4.9 Consensus size: 14
26565770 GTTTGCAAGC
26565780 AGGGGTTCGCACTTA
1 AGGGGTTCGCAC-TA
26565795 TAGGGGGTTCGCA-TA
1 -A-GGGGTTCGCACTA
26565810 AGGGGTTCGC-CTA
1 AGGGGTTCGCACTA
*
26565823 TAGTGGGTTCGCATGTA
1 -AG-GGGTTCGCA-CTA
26565840 AGGGGGTTCGCAC
1 A-GGGGTTCGCAC
26565853 ATGCAAGGGG
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
13 11 0.23
14 3 0.06
15 10 0.21
16 11 0.23
17 13 0.27
ACGTcount: A:0.18, C:0.18, G:0.38, T:0.26
Consensus pattern (14 bp):
AGGGGTTCGCACTA
Found at i:26565816 original size:13 final size:13
Alignment explanation
Indices: 26565798--26565851 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 13
26565788 GCACTTATAG
26565798 GGGGTTCGCATAA
1 GGGGTTCGCATAA
*
26565811 GGGGTTCGCCTATA
1 GGGGTTCGCATA-A
26565825 GTGGGTTCGCATGTAA
1 G-GGGTTCGCA--TAA
26565841 GGGGGTTCGCA
1 -GGGGTTCGCA
26565852 CATGCAAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 11 0.32
14 2 0.06
15 8 0.24
16 10 0.29
17 3 0.09
ACGTcount: A:0.17, C:0.17, G:0.41, T:0.26
Consensus pattern (13 bp):
GGGGTTCGCATAA
Found at i:26565831 original size:28 final size:31
Alignment explanation
Indices: 26565780--26565852 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 31
26565770 GTTTGCAAGC
26565780 AGGGGTTCGCACTTATAGGGGGTTCGCA-TA
1 AGGGGTTCGCACTTATAGGGGGTTCGCAGTA
*
26565810 AGGGGTTCGC-C-TATAGTGGGTTCGCATGTA
1 AGGGGTTCGCACTTATAGGGGGTTCGCA-GTA
26565840 AGGGGGTTCGCAC
1 A-GGGGTTCGCAC
26565853 ATGCAAGGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
28 14 0.37
29 1 0.03
30 13 0.34
31 9 0.24
32 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.38, T:0.26
Consensus pattern (31 bp):
AGGGGTTCGCACTTATAGGGGGTTCGCAGTA
Found at i:26565832 original size:15 final size:14
Alignment explanation
Indices: 26565780--26565834 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 14
26565770 GTTTGCAAGC
26565780 AGGGGTTCGCACTTAT
1 AGGGGTTCGC-C-TAT
*
26565796 AGGGGGTTCGCATA-
1 A-GGGGTTCGCCTAT
26565810 AGGGGTTCGCCTAT
1 AGGGGTTCGCCTAT
26565824 AGTGGGTTCGC
1 AG-GGGTTCGC
26565835 ATGTAAGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 11 0.32
14 3 0.09
15 10 0.29
16 1 0.03
17 9 0.26
ACGTcount: A:0.16, C:0.18, G:0.38, T:0.27
Consensus pattern (14 bp):
AGGGGTTCGCCTAT
Found at i:26577670 original size:25 final size:25
Alignment explanation
Indices: 26577636--26577705 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
26577626 CAAGAGCCAA
* *
26577636 ACAGAATACGCCATAAGGGGAACAT
1 ACAGAATACGCCATAAAGGCAACAT
* *
26577661 ATAGAGTACGCCATAAAGGCAACAT
1 ACAGAATACGCCATAAAGGCAACAT
* *
26577686 ACAGAATACGTCACAAAGGC
1 ACAGAATACGCCATAAAGGC
26577706 GGCATACATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.13
Consensus pattern (25 bp):
ACAGAATACGCCATAAAGGCAACAT
Found at i:26578344 original size:75 final size:75
Alignment explanation
Indices: 26578211--26578351 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 75
26578201 TTTTGTTGGA
* *
26578211 TAAATGCATCTTTGATTAATGTTTTGCATTAATACAATTGCATCTTTAGAAGCTTGCATTAAATG
1 TAAATGCATCTTTGATTAATGTTTTGCATTAATACAATAGCATCTTTAGAAGCCTGCATTAAATG
26578276 TCTTGTTTAT
66 TCTTGTTTAT
* * *
26578286 TAAATGCATCTTTGTTTAATGTTTTGCATTAATACACTAGCATCCTTTA-ATA-CCTGCATTATA
1 TAAATGCATCTTTGATTAATGTTTTGCATTAATACAATAGCAT-CTTTAGA-AGCCTGCATTAAA
26578349 TGT
64 TGT
26578352 TCTTCCTATT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
75 53 0.90
76 6 0.10
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (75 bp):
TAAATGCATCTTTGATTAATGTTTTGCATTAATACAATAGCATCTTTAGAAGCCTGCATTAAATG
TCTTGTTTAT
Found at i:26583090 original size:14 final size:15
Alignment explanation
Indices: 26583063--26583095 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26583053 AATGTATTTT
26583063 TTCTTTCTTCTTCTC
1 TTCTTTCTTCTTCTC
26583078 TTCTTTC-TCTTCTC
1 TTCTTTCTTCTTCTC
26583092 TTCT
1 TTCT
26583096 CCCAGCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTTCTTCTTCTC
Found at i:26586034 original size:20 final size:20
Alignment explanation
Indices: 26586011--26586048 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26586001 GTATAAAATT
*
26586011 AATGAAAGAGAAAGTTGATG
1 AATGAAAAAGAAAGTTGATG
26586031 AATGAAAAAGAAAGTTGA
1 AATGAAAAAGAAAGTTGA
26586049 ATCAAGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.18
Consensus pattern (20 bp):
AATGAAAAAGAAAGTTGATG
Found at i:26586930 original size:16 final size:16
Alignment explanation
Indices: 26586882--26586931 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
26586872 TAAAATTGAA
26586882 ATATTCAATAATTTATT
1 ATATT-AATAATTTATT
**
26586899 AT-TT--TAATACATT
1 ATATTAATAATTTATT
26586912 ATATTAATAATTTATT
1 ATATTAATAATTTATT
26586928 ATAT
1 ATAT
26586932 GACTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 9 0.35
14 2 0.08
16 13 0.50
17 2 0.08
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:26586941 original size:26 final size:26
Alignment explanation
Indices: 26586880--26586949 Score: 68
Period size: 29 Copynumber: 2.5 Consensus size: 26
26586870 AGTAAAATTG
* *
26586880 AAATATTCAATAATTTATTATTTTAAT
1 AAATATT-AATAATTTATTATATGAAT
*
26586907 ACATTATATTAATAATTTATTATATGACT
1 A-A--ATATTAATAATTTATTATATGAAT
*
26586936 AAATATAAATAATT
1 AAATATTAATAATT
26586950 AAATATGTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
26 11 0.31
27 1 0.03
28 2 0.06
29 17 0.47
30 5 0.14
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (26 bp):
AAATATTAATAATTTATTATATGAAT
Found at i:26590724 original size:39 final size:40
Alignment explanation
Indices: 26590629--26590851 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
26590619 TTGAATGATG
*
26590629 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26590667 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26590708 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26590747 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26590786 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26590825 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26590852 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26590815 original size:79 final size:81
Alignment explanation
Indices: 26590629--26590851 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
26590619 TTGAATGATG
* * *
26590629 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
26590690 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
26590708 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
26590770 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
26590786 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
26590850 TG
66 TG
26590852 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:26590873 original size:79 final size:79
Alignment explanation
Indices: 26590629--26590884 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
26590619 TTGAATGATG
* * * *
26590629 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
26590690 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
26590708 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
26590772 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
26590786 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
26590850 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
26590866 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26590885 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:26598753 original size:79 final size:81
Alignment explanation
Indices: 26598617--26598801 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
26598607 TTGAATGATG
*
26598617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26598681 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26598696 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26598758 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26598776 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26598802 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26598815 original size:40 final size:40
Alignment explanation
Indices: 26598618--26598801 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
26598608 TGAATGATGT
* * * *
26598618 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26598658 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26598698 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26598736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26598777 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26598802 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26598823 original size:79 final size:79
Alignment explanation
Indices: 26598670--26598834 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
26598660 GGACTAAGAT
* **
26598670 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26598735 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26598749 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26598812 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26598828 CCGAAGG
1 CCGAAGG
26598835 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26601160 original size:33 final size:32
Alignment explanation
Indices: 26601079--26601163 Score: 91
Period size: 33 Copynumber: 2.6 Consensus size: 32
26601069 ATGCTAGTCA
* * * *
26601079 ATATTTATTATCACTTCACAAAATTAAAGTTG
1 ATATTTGTTATCATTTCACAAAATAAAAGGTG
* *
26601111 -TAATCTGTTATAATTTCACAAAATGAAAAGGTG
1 AT-ATTTGTTATCATTTCACAAAAT-AAAAGGTG
26601144 ATATTTGTTATCATTTCACA
1 ATATTTGTTATCATTTCACA
26601164 GAACCGTGCG
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
31 1 0.02
32 18 0.43
33 22 0.52
34 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (32 bp):
ATATTTGTTATCATTTCACAAAATAAAAGGTG
Found at i:26602120 original size:17 final size:17
Alignment explanation
Indices: 26602073--26602120 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
26602063 ACAATTACAT
26602073 ACCAAAGAATA-TAAAA
1 ACCAAAGAATATTAAAA
* *
26602089 AACAAATGAAATATTAGAA
1 ACCAAA-G-AATATTAAAA
26602108 ACCAAAGAATATT
1 ACCAAAGAATATT
26602121 GGTGGCGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 5 0.19
19 9 0.35
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.19
Consensus pattern (17 bp):
ACCAAAGAATATTAAAA
Found at i:26605129 original size:17 final size:17
Alignment explanation
Indices: 26605107--26605139 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26605097 ATGCAAATCC
26605107 CGTACAAGCACGCATAT
1 CGTACAAGCACGCATAT
*
26605124 CGTACAAGCGCGCATA
1 CGTACAAGCACGCATA
26605140 CTAACCCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.21, T:0.15
Consensus pattern (17 bp):
CGTACAAGCACGCATAT
Found at i:26606511 original size:59 final size:61
Alignment explanation
Indices: 26606436--26606552 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
26606426 ATCACTTTAG
* * *
26606436 TATTAAATTAATATAATATTTA-T-CAAGACAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAAGATAATATTTACTACAAAACAAATATTAGATTAAATTTAATATTAAATCT
* *
26606495 TATTAAAATAAGATAATGTTTATCTACAAAATAAATATTAGATTAAATTTAATATTAA
1 TATTAAAATAAGATAATATTTA-CTACAAAACAAATATTAGATTAAATTTAATATTAA
26606553 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 19 0.38
61 1 0.02
62 30 0.60
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (61 bp):
TATTAAAATAAGATAATATTTACTACAAAACAAATATTAGATTAAATTTAATATTAAATCT
Found at i:26607073 original size:19 final size:19
Alignment explanation
Indices: 26607049--26607088 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26607039 AAAATATCAT
* *
26607049 ATTAATTTTATTTTATTTG
1 ATTAATTTAATTTTACTTG
26607068 ATTAATTTAATTTTACTTG
1 ATTAATTTAATTTTACTTG
26607087 AT
1 AT
26607089 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTAATTTAATTTTACTTG
Found at i:26612378 original size:22 final size:22
Alignment explanation
Indices: 26612332--26612378 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26612322 ATAAATTATT
* ** *
26612332 TTTATAATATAATTTTTTAATA
1 TTTATAATATAAATTTAGAAAA
26612354 TTTATAATATAAATTTAGAAAA
1 TTTATAATATAAATTTAGAAAA
26612376 TTT
1 TTT
26612379 TTGTTATAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTATAATATAAATTTAGAAAA
Found at i:26622003 original size:33 final size:33
Alignment explanation
Indices: 26621964--26622082 Score: 121
Period size: 33 Copynumber: 3.3 Consensus size: 33
26621954 TAAATAAAAG
26621964 ATAAATAAAAAGATGAATCAATTATGCAAGATA
1 ATAAATAAAAAGATGAATCAATTATGCAAGATA
*
26621997 ATAAATAAACGAGTTGAATTAAAACGAATCAATTATGCAAGATA
1 ATAAATAAA--A--AG-A-T-----GAATCAATTATGCAAGATA
*
26622041 ATAAATAAAAAGACGAATCAATTATGCAAGATA
1 ATAAATAAAAAGATGAATCAATTATGCAAGATA
26622074 ATAAATAAA
1 ATAAATAAA
26622083 CTTCAGTCTG
Statistics
Matches: 72, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
33 37 0.51
35 1 0.01
37 1 0.01
38 1 0.01
39 2 0.03
40 1 0.01
42 1 0.01
44 28 0.39
ACGTcount: A:0.57, C:0.08, G:0.12, T:0.24
Consensus pattern (33 bp):
ATAAATAAAAAGATGAATCAATTATGCAAGATA
Found at i:26622003 original size:44 final size:42
Alignment explanation
Indices: 26621954--26622050 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 42
26621944 CAAACAGCAG
*
26621954 TAAATAAAAGATAAATAAAAAGATGAATCAATTATGCAAGATAA
1 TAAATAAAAGATAAAT-AAAA-ACGAATCAATTATGCAAGATAA
* * *
26621998 TAAATAAACGAGTTGAATTAAAACGAATCAATTATGCAAGATAA
1 TAAATAAA--AGATAAATAAAAACGAATCAATTATGCAAGATAA
26622042 TAAATAAAA
1 TAAATAAAA
26622051 AGACGAATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
44 37 0.79
45 3 0.06
46 6 0.13
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.24
Consensus pattern (42 bp):
TAAATAAAAGATAAATAAAAACGAATCAATTATGCAAGATAA
Found at i:26622131 original size:44 final size:44
Alignment explanation
Indices: 26622081--26622620 Score: 251
Period size: 44 Copynumber: 12.0 Consensus size: 44
26622071 ATAATAAATA
*
26622081 AACTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * *
26622125 AACTTCAATCTGCTCCACTGCAGCTTCATGGAGATAAGACCTGT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * * **
26622169 ATCTTCAACCTGCTCCACTGCGACTTCAGGGAGATAAAATTTGAAATGAT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGAT--AA---GACTTG-T
* * * ** * *
26622219 AAGATTTAATCCGAC-CCTTTGCAACTTCAAAGG-TATAAGA-TT-T
1 AA-CTTCAATCTG-CTCCACTGCAACTTC-AGGGAGATAAGACTTGT
* * * * * *
26622262 ATCGTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGA-TTAGT
1 AAC--TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GT
** * *
26622308 AGTTTCAGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTTGT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * * **
26622352 ATCTTCAACCTGC-CCTACTGCAACTT-AGGGGGATAAGGTTTGT
1 AACTTCAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTTGT
* * * * ** *
26622395 TACTTTAA-CATACTCTACTGCAACTTCAGAAAGATAAG-GTT-T
1 AACTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * * * *
26622437 GA-TAT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCGGTAATTT
1 AACT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--T--TGT
* * * * * *
26622485 ATAGCTTCAATTTGTTCCGCTGCAACTTTAGGGAAATAAGACTCGCT
1 A-A-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-T
* * * * *
26622532 ATCTTCAGTCTGCTCCACCGCAACTTCAGAGAGATAATG-TTTGTT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GACTTG-T
* * *
26622577 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATGAGACTTGT
1 AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
26622621 TTTCGATCTG
Statistics
Matches: 371, Mismatches: 89, Indels: 72
0.70 0.17 0.14
Matches are distributed among these distances:
41 28 0.08
42 5 0.01
43 40 0.11
44 156 0.42
45 71 0.19
46 7 0.02
47 3 0.01
48 2 0.01
49 7 0.02
50 4 0.01
51 44 0.12
52 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
AACTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
Found at i:26622557 original size:45 final size:45
Alignment explanation
Indices: 26622506--26622617 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
26622496 TTGTTCCGCT
* *
26622506 GCAACTTTAGGGAAATAAGACTCGCTATCTTCAGTCTGCTCCACC
1 GCAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTGCTCCACC
* * * * *
26622551 GCAACTTCAGAGAGATAATG-TTTGTTATCTTCAGTCTGCTCCACT
1 GCAACTTCAGGGAGATAA-GACTCGCTATCTTCAGTCTGCTCCACC
*
26622596 GCAACTTCAGGGAGATGAGACT
1 GCAACTTCAGGGAGATAAGACT
26622618 TGTTTTCGAT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 1 0.02
45 53 0.96
46 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (45 bp):
GCAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTGCTCCACC
Found at i:26622776 original size:83 final size:84
Alignment explanation
Indices: 26622589--26622782 Score: 327
Period size: 83 Copynumber: 2.3 Consensus size: 84
26622579 CTTCAGTCTG
* *
26622589 CTCCACTGCAACTTCAGGGAGATGAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAGAC
1 CTCCACTGCTACTT-AGGGAGAT-AGACTTGTTTTCGATCTGCTTCACTGCCAGTACAAGAAGA-
*
26622654 AAGATCTACAATCTTTAACCTA
63 AAGATCTACAATCTTCAACCTA
26622676 CTCCACTGCTACTTAGGGAGATAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAAGAAG-AAG
1 CTCCACTGCTACTTAGGGAGATAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAAGAAGAAAG
26622740 ATCTACAATCTTCAACCTA
66 ATCTACAATCTTCAACCTA
26622759 CTCCACTGCTACTTAGGGAGATAG
1 CTCCACTGCTACTTAGGGAGATAG
26622783 GACTAGTGGC
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
83 45 0.43
85 38 0.37
86 8 0.08
87 13 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (84 bp):
CTCCACTGCTACTTAGGGAGATAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAAGAAGAAAG
ATCTACAATCTTCAACCTA
Found at i:26622824 original size:83 final size:82
Alignment explanation
Indices: 26622589--26622805 Score: 236
Period size: 83 Copynumber: 2.5 Consensus size: 82
26622579 CTTCAGTCTG
* ** ** * *
26622589 CTCCACTGCAACTTCAGGGAGATGAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAGAC
1 CTCCACTGCTACTT-AGGGAGAT-AGACTTGGCTTAAATCTGCTTCAC-GCCACTACAAGAAG--
*
26622654 AAGATCTACAATCTTTAACCTA
61 AAGATCTACAATCTTCAACCTA
** ** *
26622676 CTCCACTGCTACTTAGGGAGATAGACTTGTTTTCGATCTGCTTCACTGCCAGTACAAGAAGAAGA
1 CTCCACTGCTACTTAGGGAGATAGACTTGGCTTAAATCTGCTTCAC-GCCACTACAAGAAGAAGA
26622741 TCTACAATCTTCAACCTA
65 TCTACAATCTTCAACCTA
26622759 CTCCACTGCTACTTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTC
1 CTCCACTGCTACTTAGGGAGATA-GACT--TGGCTTAAATCTGCTTC
26622806 CCTACTACCT
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
83 44 0.37
84 4 0.03
85 38 0.32
86 21 0.17
87 13 0.11
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (82 bp):
CTCCACTGCTACTTAGGGAGATAGACTTGGCTTAAATCTGCTTCACGCCACTACAAGAAGAAGAT
CTACAATCTTCAACCTA
Found at i:26627983 original size:21 final size:21
Alignment explanation
Indices: 26627960--26628002 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
26627950 TAATTTTAGA
26627960 ATAATA-ATACATAT-TAAA-
1 ATAATATATACATATATAAAG
26627978 ATAATATATACATATATAAAG
1 ATAATATATACATATATAAAG
26627999 ATAA
1 ATAA
26628003 AGAAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 8 0.36
20 4 0.18
21 4 0.18
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATATATACATATATAAAG
Found at i:26629246 original size:13 final size:16
Alignment explanation
Indices: 26629215--26629246 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
26629205 TGGACTGTTA
26629215 TTTTTGGCTATTTATT
1 TTTTTGGCTATTTATT
26629231 TTTTTGG-T-TTTATT
1 TTTTTGGCTATTTATT
26629245 TT
1 TT
26629247 GGGCCCAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.09, C:0.03, G:0.12, T:0.75
Consensus pattern (16 bp):
TTTTTGGCTATTTATT
Found at i:26634711 original size:5 final size:5
Alignment explanation
Indices: 26634697--26634729 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
26634687 AAGTATTAAG
26634697 TATA- TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
26634730 ATAAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:26635529 original size:24 final size:24
Alignment explanation
Indices: 26635502--26635548 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
26635492 ATTGAAATGG
26635502 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
26635526 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
26635549 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:26635763 original size:41 final size:40
Alignment explanation
Indices: 26635706--26635841 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 40
26635696 TGATTTCGAG
26635706 TCGATGAGACACTGGGTGTCAATTTACTACTTCAGATTAAC
1 TCGATGAGACACTGGGTGTCAATTTA-TACTTCAGATTAAC
* *
26635747 TCGATGAGACACTGGGTGCCAA-TT-TACTTCAGTTTAAC
1 TCGATGAGACACTGGGTGTCAATTTATACTTCAGATTAAC
* *
26635785 -CGATGAGACACTGTGTGTCAATTTATTACTTC-GAATTATC
1 TCGATGAGACACTGGGTGTCAATTTA-TACTTCAG-ATTAAC
*
26635825 T-GATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
26635842 CCAAACTGGT
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
37 19 0.23
38 15 0.18
39 1 0.01
40 26 0.32
41 21 0.26
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAATTTATACTTCAGATTAAC
Found at i:26635807 original size:37 final size:38
Alignment explanation
Indices: 26635706--26635809 Score: 147
Period size: 37 Copynumber: 2.7 Consensus size: 38
26635696 TGATTTCGAG
26635706 TCGATGAGACACTGGGTGTCAATTTACTACTTCAGATTAAC
1 TCGATGAGACACTGGGTGTCAA-TT--TACTTCAGATTAAC
* *
26635747 TCGATGAGACACTGGGTGCCAATTTACTTCAGTTTAAC
1 TCGATGAGACACTGGGTGTCAATTTACTTCAGATTAAC
*
26635785 -CGATGAGACACTGTGTGTCAATTTA
1 TCGATGAGACACTGGGTGTCAATTTA
26635810 TTACTTCGAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
37 23 0.39
38 13 0.22
40 2 0.03
41 21 0.36
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (38 bp):
TCGATGAGACACTGGGTGTCAATTTACTTCAGATTAAC
Found at i:26638366 original size:25 final size:25
Alignment explanation
Indices: 26638285--26638491 Score: 113
Period size: 25 Copynumber: 8.2 Consensus size: 25
26638275 ATTCATATTT
*
26638285 GGGAATGCTCATGTGAGCACATA-AAC
1 GGGAA-GCTCATATGAGC-CATATAAC
* * *
26638311 GGGAAGCTCTCTCTCGAGCCATATAAT
1 GGGAAGCTC-ATAT-GAGCCATATAAC
*
26638338 GGGAAGCTCATATGAGCCATGTAAC
1 GGGAAGCTCATATGAGCCATATAAC
* * * *
26638363 GGGAAGCTTATACGGGCTATATAAC
1 GGGAAGCTCATATGAGCCATATAAC
* *
26638388 GGGAAGCTAATAAT-AGCCATAATTA-
1 GGGAAGCTCAT-ATGAGCCAT-ATAAC
**
26638413 -GGAAGCTCATGCGAGCCA-ATAAC
1 GGGAAGCTCATATGAGCCATATAAC
* ** * *
26638436 GGGTAGCTCCGAAGATCCAT-TAATC
1 GGGAAGCTCATATGAGCCATATAA-C
* *
26638461 GGGAAGCTCTAGAT-AGCCATATATC
1 GGGAAGCTC-ATATGAGCCATATAAC
26638486 GGGAAG
1 GGGAAG
26638492 TTCAAGCAAG
Statistics
Matches: 137, Mismatches: 32, Indels: 25
0.71 0.16 0.13
Matches are distributed among these distances:
22 3 0.02
24 29 0.21
25 69 0.50
26 21 0.15
27 15 0.11
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
GGGAAGCTCATATGAGCCATATAAC
Found at i:26638552 original size:26 final size:26
Alignment explanation
Indices: 26638521--26638576 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26638511 AAAGCTCCGG
26638521 AGAGCCATTAATCAAGAAGCTCACAA
1 AGAGCCATTAATCAAGAAGCTCACAA
* *
26638547 AGAGCCTTTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAAGAAGCTCACAA
26638573 AGAG
1 AGAG
26638577 TCATATATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.20, T:0.16
Consensus pattern (26 bp):
AGAGCCATTAATCAAGAAGCTCACAA
Found at i:26638674 original size:24 final size:26
Alignment explanation
Indices: 26638641--26638699 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 26
26638631 CACAACCAAT
*
26638641 CGGGACGCTCCG-AAGAGCT-AT-TAA
1 CGGGAAGCTCCGTAAGA-CTCATATAA
*
26638665 CGGGAAGCT-CGTAAGATTCATATAA
1 CGGGAAGCTCCGTAAGACTCATATAA
26638690 CGGGAAGCTC
1 CGGGAAGCTC
26638700 GAAAGGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 3 0.10
24 14 0.48
25 12 0.41
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.19
Consensus pattern (26 bp):
CGGGAAGCTCCGTAAGACTCATATAA
Found at i:26647119 original size:44 final size:45
Alignment explanation
Indices: 26647056--26647145 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 45
26647046 TTTATAAAGG
* *
26647056 AAATAAAAACCTAATATAAT-AGAGAATAAGTAAAACTAAAACTC
1 AAATAAAAACCTAATATAATAAGAAAATAAATAAAACTAAAACTC
*
26647100 AAATAAAAACCTGATATAATAAAGAAAATAAATAAAACTAAAACTC
1 AAATAAAAACCTAATATAAT-AAGAAAATAAATAAAACTAAAACTC
26647146 GAATTGCTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 19 0.46
46 22 0.54
ACGTcount: A:0.63, C:0.11, G:0.06, T:0.20
Consensus pattern (45 bp):
AAATAAAAACCTAATATAATAAGAAAATAAATAAAACTAAAACTC
Found at i:26648529 original size:34 final size:35
Alignment explanation
Indices: 26648486--26648569 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
26648476 TTTATAAAGG
* * * *
26648486 AAATAAAAAC-CTAATATGATAGAGAAAATAAGTA
1 AAATTAAAACTCTAATATAATAAAGAAAATAAATA
26648520 AAATTAAAACTCT-ATATAATAAAGAAAATAAATA
1 AAATTAAAACTCTAATATAATAAAGAAAATAAATA
26648554 AAATTAAAACTCTAAT
1 AAATTAAAACTCTAAT
26648570 TGCTGCCGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
34 40 0.91
35 4 0.09
ACGTcount: A:0.62, C:0.07, G:0.06, T:0.25
Consensus pattern (35 bp):
AAATTAAAACTCTAATATAATAAAGAAAATAAATA
Found at i:26648939 original size:38 final size:38
Alignment explanation
Indices: 26648888--26648961 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
26648878 TCCTAATATA
26648888 CACTTATATACTAATTTCAACGAAATCATGCCACCATG
1 CACTTATATACTAATTTCAACGAAATCATGCCACCATG
26648926 CACTTATATACTAATTTCAACGAAATCATGCCACCA
1 CACTTATATACTAATTTCAACGAAATCATGCCACCA
26648962 CTAACTTGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.28
Consensus pattern (38 bp):
CACTTATATACTAATTTCAACGAAATCATGCCACCATG
Found at i:26655857 original size:20 final size:19
Alignment explanation
Indices: 26655834--26655894 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
26655824 AACATTGATG
26655834 GCTTGTTCACATTACTGGCA
1 GCTTGTTCACA-TACTGGCA
**
26655854 GCTTGTCTGCA-ATACTGGTG
1 GCTTGT-T-CACATACTGGCA
*
26655874 GCTTGTCCACAATACTGGCA
1 GCTTGTTCAC-ATACTGGCA
26655894 G
1 G
26655895 TTTATCTGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
18 2 0.06
20 26 0.81
21 2 0.06
22 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.31
Consensus pattern (19 bp):
GCTTGTTCACATACTGGCA
Found at i:26655861 original size:40 final size:40
Alignment explanation
Indices: 26655816--26655927 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 40
26655806 TACTGACAAT
* * *
26655816 TTGTCTGCAACATTGATGGCTTGTTCACATTACTGGCAGC
1 TTGTCTGCAACACTGATGGCTTGTCCACAATACTGGCAGC
* * *
26655856 TTGTCTGCAATACTGGTGGCTTGTCCACAATACTGGCAGT
1 TTGTCTGCAACACTGATGGCTTGTCCACAATACTGGCAGC
* * * * *
26655896 TTATCTGCAATACTGGTGGCTTATCCATAATA
1 TTGTCTGCAACACTGATGGCTTGTCCACAATA
26655928 TCGATAGTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (40 bp):
TTGTCTGCAACACTGATGGCTTGTCCACAATACTGGCAGC
Found at i:26655906 original size:20 final size:20
Alignment explanation
Indices: 26655846--26655911 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
26655836 TTGTTCACAT
26655846 TACTGGCAGCTTGTCTGCAA
1 TACTGGCAGCTTGTCTGCAA
** **
26655866 TACTGGTGGCTTGTCCACAA
1 TACTGGCAGCTTGTCTGCAA
* *
26655886 TACTGGCAGTTTATCTGCAA
1 TACTGGCAGCTTGTCTGCAA
26655906 TACTGG
1 TACTGG
26655912 TGGCTTATCC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (20 bp):
TACTGGCAGCTTGTCTGCAA
Found at i:26655919 original size:20 final size:20
Alignment explanation
Indices: 26655854--26655997 Score: 76
Period size: 20 Copynumber: 7.2 Consensus size: 20
26655844 ATTACTGGCA
*
26655854 GCTTGTCTGCAATACTGGTG
1 GCTTATCTGCAATACTGGTG
* ** **
26655874 GCTTGTCCACAATACTGGCA
1 GCTTATCTGCAATACTGGTG
*
26655894 GTTTATCTGCAATACTGGTG
1 GCTTATCTGCAATACTGGTG
*** * *
26655914 GCTTATCCATAATA-TCGATA
1 GCTTATCTGCAATACT-GGTG
*
26655934 GTTTATCTGCAATACTGGTG
1 GCTTATCTGCAATACTGGTG
* * * * *
26655954 GCTTGTC-GACATTTCTAGTA
1 GCTTATCTG-CAATACTGGTG
* *
26655974 GTTTATCTACAATACTGGTG
1 GCTTATCTGCAATACTGGTG
26655994 GCTT
1 GCTT
26655998 GTCCACAAAC
Statistics
Matches: 84, Mismatches: 36, Indels: 8
0.66 0.28 0.06
Matches are distributed among these distances:
19 2 0.02
20 81 0.96
21 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (20 bp):
GCTTATCTGCAATACTGGTG
Found at i:26655937 original size:40 final size:39
Alignment explanation
Indices: 26655859--26656002 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 39
26655849 TGGCAGCTTG
**
26655859 TCTGCAATACTGGTGGCTTGTCCACAATA-CTGGCAGTTTA
1 TCTGCAATACTGGTGGCTTGTCCA-AATATC-GATAGTTTA
*
26655899 TCTGCAATACTGGTGGCTTATCCATAATATCGATAGTTTA
1 TCTGCAATACTGGTGGCTTGTCCA-AATATCGATAGTTTA
* * * *
26655939 TCTGCAATACTGGTGGCTTGTCGACATTTCTAGTAGTTTA
1 TCTGCAATACTGGTGGCTTGTCCAAATATCGA-TAGTTTA
*
26655979 TCTACAATACTGGTGGCTTGTCCA
1 TCTGCAATACTGGTGGCTTGTCCA
26656003 CAAACTAGTG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 5 0.05
40 85 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (39 bp):
TCTGCAATACTGGTGGCTTGTCCAAATATCGATAGTTTA
Found at i:26656342 original size:11 final size:11
Alignment explanation
Indices: 26656326--26656350 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26656316 TTAAAGTACA
26656326 TTAAAACTTAT
1 TTAAAACTTAT
26656337 TTAAAACTTAT
1 TTAAAACTTAT
26656348 TTA
1 TTA
26656351 TATTATTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (11 bp):
TTAAAACTTAT
Found at i:26659159 original size:40 final size:40
Alignment explanation
Indices: 26659115--26659223 Score: 107
Period size: 40 Copynumber: 2.7 Consensus size: 40
26659105 AAATGCATAA
**
26659115 CAGGGGCACCAAAGTGCAATCAGGAGTGCAAATGAGCGA-T
1 CAGGGGCACCAAAGTGCAATCAGGAGCACAAATGAGC-ATT
* *
26659155 CAGGGGCACCGAAA-TGCAAAT-AGGGGCACAAATGTGCATT
1 CAGGGGCACC-AAAGTGC-AATCAGGAGCACAAATGAGCATT
* * *
26659195 CAGGGGTACCAAAGTTCAATCAGGGGCAC
1 CAGGGGCACCAAAGTGCAATCAGGAGCAC
26659224 TGATGTGCAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
39 7 0.12
40 45 0.78
41 6 0.10
ACGTcount: A:0.34, C:0.21, G:0.31, T:0.14
Consensus pattern (40 bp):
CAGGGGCACCAAAGTGCAATCAGGAGCACAAATGAGCATT
Found at i:26659192 original size:20 final size:20
Alignment explanation
Indices: 26659169--26659280 Score: 52
Period size: 20 Copynumber: 5.6 Consensus size: 20
26659159 GGCACCGAAA
26659169 TGCAAATAGGGGCACAAATG
1 TGCAAATAGGGGCACAAATG
* *
26659189 TGC-ATTCAGGGGTACCAAA-G
1 TGCAAAT-AGGGGCA-CAAATG
* **
26659209 TTC-AATCAGGGGCACTGATG
1 TGCAAAT-AGGGGCACAAATG
* * *
26659229 TGCAAATAAGGGTACCGAA-G
1 TGCAAATAGGGGCA-CAAATG
** *
26659249 TATAAATAGGGGCACTAATG
1 TGCAAATAGGGGCACAAATG
*
26659269 TGCAAACAGGGG
1 TGCAAATAGGGG
26659281 TACTTATTCA
Statistics
Matches: 66, Mismatches: 20, Indels: 12
0.67 0.20 0.12
Matches are distributed among these distances:
19 7 0.11
20 50 0.76
21 9 0.14
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (20 bp):
TGCAAATAGGGGCACAAATG
Found at i:26659230 original size:40 final size:40
Alignment explanation
Indices: 26659172--26659283 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
26659162 ACCGAAATGC
* *
26659172 AAATAGGGGCACAAATGTGCATTCAGGGGTACCAAAGT-T
1 AAATAGGGGCACTAATGTGCAATCAGGGGTACCAAAGTAT
* * * *
26659211 CAATCAGGGGCACTGATGTGCAAAT-AAGGGTACCGAAGTAT
1 AAAT-AGGGGCACTAATGTGC-AATCAGGGGTACCAAAGTAT
*
26659252 AAATAGGGGCACTAATGTGCAAACAGGGGTAC
1 AAATAGGGGCACTAATGTGCAATCAGGGGTAC
26659284 TTATTCATTT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.08
40 48 0.81
41 6 0.10
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (40 bp):
AAATAGGGGCACTAATGTGCAATCAGGGGTACCAAAGTAT
Found at i:26659918 original size:18 final size:18
Alignment explanation
Indices: 26659895--26659932 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
26659885 CAAGATCAGT
26659895 TAACAA-AATACTTTTAAA
1 TAACAACAATAC-TTTAAA
26659913 TAACAACTAATACTTTAAA
1 TAACAAC-AATACTTTAAA
26659932 T
1 T
26659933 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (18 bp):
TAACAACAATACTTTAAA
Found at i:26665585 original size:16 final size:16
Alignment explanation
Indices: 26665561--26665595 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26665551 TTGCTTAGCC
26665561 AGAAAAATAAAATAAT
1 AGAAAAATAAAATAAT
* *
26665577 AGAATAATAAAATATT
1 AGAAAAATAAAATAAT
26665593 AGA
1 AGA
26665596 TGGTTCTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23
Consensus pattern (16 bp):
AGAAAAATAAAATAAT
Found at i:26666878 original size:13 final size:14
Alignment explanation
Indices: 26666848--26666875 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26666838 AAATATCAAC
26666848 TAAAAATCAAATTT
1 TAAAAATCAAATTT
26666862 TAAAAATCAAATTT
1 TAAAAATCAAATTT
26666876 AAACTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAAATCAAATTT
Found at i:26668721 original size:43 final size:43
Alignment explanation
Indices: 26668660--26668741 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
26668650 GTACGAGTCA
26668660 GACTAAACATCGTTAGGGTCAGCAAAACCCATGGCTATGGTCG
1 GACTAAACATCGTTAGGGTCAGCAAAACCCATGGCTATGGTCG
26668703 GACTAAACATCGTTAGGGTCAGCAAAACCCATGGCTATG
1 GACTAAACATCGTTAGGGTCAGCAAAACCCATGGCTATG
26668742 TTAAAATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (43 bp):
GACTAAACATCGTTAGGGTCAGCAAAACCCATGGCTATGGTCG
Found at i:26668722 original size:21 final size:21
Alignment explanation
Indices: 26668656--26668724 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
26668646 TATGGTACGA
26668656 GTCAGACTAAACATCGTTAGG
1 GTCAGACTAAACATCGTTAGG
* * * *
26668677 GTCAG-CAAAACCCATGGCTATG
1 GTCAGACTAAA--CATCGTTAGG
*
26668699 GTCGGACTAAACATCGTTAGG
1 GTCAGACTAAACATCGTTAGG
26668720 GTCAG
1 GTCAG
26668725 CAAAACCCAT
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
20 4 0.11
21 16 0.46
22 11 0.31
23 4 0.11
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (21 bp):
GTCAGACTAAACATCGTTAGG
Found at i:26672660 original size:17 final size:17
Alignment explanation
Indices: 26672640--26672690 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
26672630 AGATACTGTC
* *
26672640 CACTAGTCGGTACTATT
1 CACTAGACGATACTATT
* * *
26672657 CACTAGGCAATACTATC
1 CACTAGACGATACTATT
26672674 CACTAGACGATACTATT
1 CACTAGACGATACTATT
26672691 TGCTAAGCGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (17 bp):
CACTAGACGATACTATT
Found at i:26672676 original size:34 final size:34
Alignment explanation
Indices: 26672632--26672709 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
26672622 CTGCTAGTAG
* * * *
26672632 ATACTGTCCACTAGTCGGTACTATTCACTAGGCA
1 ATACTATCCACTAGACGATACTATTCACTAAGCA
** *
26672666 ATACTATCCACTAGACGATACTATTTGCTAAGCG
1 ATACTATCCACTAGACGATACTATTCACTAAGCA
26672700 ATACTATCCA
1 ATACTATCCA
26672710 AAAAGTGATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (34 bp):
ATACTATCCACTAGACGATACTATTCACTAAGCA
Found at i:26704627 original size:35 final size:35
Alignment explanation
Indices: 26704588--26704660 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
26704578 TGCGCATACT
26704588 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
26704623 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
26704658 TTT
1 TTT
26704661 TGTGAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (35 bp):
TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
Found at i:26709006 original size:19 final size:20
Alignment explanation
Indices: 26708976--26709015 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
26708966 AGGTAGGACC
*
26708976 GTTTTCACAAAATATGTATT
1 GTTTTCACAAAATATGCATT
26708996 GTTTT-ACAAAATATGCATT
1 GTTTTCACAAAATATGCATT
26709015 G
1 G
26709016 ACATGATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (20 bp):
GTTTTCACAAAATATGCATT
Found at i:26710674 original size:16 final size:16
Alignment explanation
Indices: 26710649--26710685 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
26710639 AAACCTTTTA
26710649 TTAT-TATTATAAATG
1 TTATATATTATAAATG
*
26710664 TTATATATTATAAATT
1 TTATATATTATAAATG
26710680 TTATAT
1 TTATAT
26710686 TAACTTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTATATATTATAAATG
Found at i:26722983 original size:25 final size:25
Alignment explanation
Indices: 26722949--26723002 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
26722939 TTCTGATTTT
*
26722949 AGCTCTTATGAGCTTATCGATACTC
1 AGCTCGTATGAGCTTATCGATACTC
* * *
26722974 AGCTCGTATGTGCTTATCGTTATTC
1 AGCTCGTATGAGCTTATCGATACTC
26722999 AGCT
1 AGCT
26723003 TGGAGGTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (25 bp):
AGCTCGTATGAGCTTATCGATACTC
Found at i:26723011 original size:25 final size:25
Alignment explanation
Indices: 26722958--26723069 Score: 116
Period size: 25 Copynumber: 4.5 Consensus size: 25
26722948 TAGCTCTTAT
* * * * *
26722958 GAGCTTATCGATACTCAGCTCGTAT
1 GAGCTTATCGTTATTCAGCTTGGAG
*
26722983 GTGCTTATCGTTATTCAGCTTGGAG
1 GAGCTTATCGTTATTCAGCTTGGAG
* *
26723008 GTGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTATCGTTATTCAGCTTGGAG
* * * *
26723033 GACCTTACCATTATTCAGTTTGGAG
1 GAGCTTATCGTTATTCAGCTTGGAG
26723058 GAGCTTATCGTT
1 GAGCTTATCGTT
26723070 TACAGCTCGT
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (25 bp):
GAGCTTATCGTTATTCAGCTTGGAG
Found at i:26723274 original size:26 final size:26
Alignment explanation
Indices: 26723227--26723280 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26723217 TACAGGTATT
*
26723227 TACATGAGATATATGAAAATGATTTG
1 TACATGAGATATATGAAAATGATGTG
* *
26723253 TACATGATATATA-GATACATGATGTG
1 TACATGAGATATATGA-AAATGATGTG
26723279 TA
1 TA
26723281 AATTATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (26 bp):
TACATGAGATATATGAAAATGATGTG
Found at i:26725853 original size:21 final size:21
Alignment explanation
Indices: 26725811--26725872 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
26725801 TTAGGAACAT
* *
26725811 GAGGTGATCGGCCTCGA-GGTG
1 GAGGTGAACGGCCTC-ATTGTG
26725832 GAGGTGAACGGCCTCATTGTG
1 GAGGTGAACGGCCTCATTGTG
* * *
26725853 GAGGTAAACGTCCTCGTTGT
1 GAGGTGAACGGCCTCATTGT
26725873 CATTGTAAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.18, C:0.19, G:0.39, T:0.24
Consensus pattern (21 bp):
GAGGTGAACGGCCTCATTGTG
Found at i:26726457 original size:11 final size:10
Alignment explanation
Indices: 26726437--26726466 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
26726427 TATGAATCAA
26726437 TTTTTTTTCT
1 TTTTTTTTCT
26726447 TTTTTTCTTCT
1 TTTTTT-TTCT
26726458 TTTTTTTTC
1 TTTTTTTTC
26726467 AACTTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:26726529 original size:19 final size:19
Alignment explanation
Indices: 26726501--26726550 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
26726491 TCACTTCGTA
26726501 TATT-TTTCAAAATTTTTT
1 TATTATTTCAAAATTTTTT
*
26726519 TATTATTTCAAACTTTTTT
1 TATTATTTCAAAATTTTTT
* *
26726538 CACTATTTCAAAA
1 TATTATTTCAAAA
26726551 CTTCTAATAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTATTTCAAAATTTTTT
Found at i:26734747 original size:33 final size:33
Alignment explanation
Indices: 26734705--26734857 Score: 111
Period size: 33 Copynumber: 4.5 Consensus size: 33
26734695 ATATGGTGGG
26734705 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
* *
26734738 ATCAGCACTTAGTAACC-CC--T---TGGGGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
* *
26734765 ATCAGCACTTAGCAACCCCCTTTATATTCCAAGATACGGTGGA
1 ATCAGCACTTAGCAACCACC---A-A-T--GAG-T-CGG-GGA
* *
26734808 ATCAGCACTTAGCAACCACCAATGAATCGAGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
*
26734841 ATCAACACTTAGCAACC
1 ATCAGCACTTAGCAACC
26734858 CTTTTTATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 32
0.70 0.07 0.24
Matches are distributed among these distances:
27 22 0.23
28 2 0.02
30 1 0.01
32 2 0.02
33 35 0.37
34 2 0.02
35 2 0.02
36 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 1 0.01
42 2 0.02
43 22 0.23
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (33 bp):
ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
Found at i:26734815 original size:103 final size:102
Alignment explanation
Indices: 26734658--26734858 Score: 287
Period size: 103 Copynumber: 2.0 Consensus size: 102
26734648 CCAGTTATTC
* * * * *
26734658 GGGGAATTAGCATTTAGCAACCCCTTTCACATTTAAGATATGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATACGGTGGAATCAGCACTTAGCAACCA
* * * *
26734723 CCAATGAGTCGGGGAATCAGCACTTAGTAACCCCTTG
66 CCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
*
26734760 GGGGAATCAGCACTTAGCAACCCCCTTT-ATATTCCAAGATACGGTGGAATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAA-CCCCTTTCACATT-CAAGATACGGTGGAATCAGCACTTAGCAAC
26734824 CACCAATGAATCGAGGAATCAACACTTAGCAACCC
64 CACCAATGAATCGAGGAATCAACACTTAGCAACCC
26734859 TTTTTATATT
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
102 22 0.25
103 65 0.75
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
Found at i:26735956 original size:11 final size:13
Alignment explanation
Indices: 26735928--26735961 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
26735918 GCCCAAACGT
26735928 CGAAATTTTCGAA
1 CGAAATTTTCGAA
26735941 CGAAATTTT-G-A
1 CGAAATTTTCGAA
26735952 CGAAATTTTC
1 CGAAATTTTC
26735962 TGTGAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 10 0.50
12 1 0.05
13 9 0.45
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (13 bp):
CGAAATTTTCGAA
Found at i:26745350 original size:31 final size:31
Alignment explanation
Indices: 26745312--26745375 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
26745302 TTTTCTTGAG
26745312 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
1 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
26745343 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
1 TTTGGATTTTAGGCGAGAAATAGAATGCTAA
26745374 TT
1 TT
26745376 ATCGATACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (31 bp):
TTTGGATTTTAGGCGAGAAATAGAATGCTAA
Found at i:26750308 original size:39 final size:39
Alignment explanation
Indices: 26750244--26750320 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
26750234 TATACCTCTG
*
26750244 ATTGCACTTACGTGCCCCTGATGTACTTCGGTACCCCTA
1 ATTGCACTTACGTGCCCCTGATGTACTTCAGTACCCCTA
* * *
26750283 ATTGCGCTTACGTGCTCCT-ATTGTACTTCAGTAGCCCT
1 ATTGCACTTACGTGCCCCTGA-TGTACTTCAGTACCCCT
26750321 GATCGCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.17, C:0.31, G:0.18, T:0.34
Consensus pattern (39 bp):
ATTGCACTTACGTGCCCCTGATGTACTTCAGTACCCCTA
Found at i:26752745 original size:5 final size:5
Alignment explanation
Indices: 26752732--26752779 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
26752722 GGTTAAGTGA
*
26752732 TTTGG TTTGC TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTT
1 TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTTGG TTT
26752780 AATAATTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.00, C:0.02, G:0.35, T:0.62
Consensus pattern (5 bp):
TTTGG
Found at i:26761933 original size:25 final size:25
Alignment explanation
Indices: 26761905--26761956 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26761895 GTCTTCCCAT
26761905 TGCCATTTTCAGATCTTAGAAACCC
1 TGCCATTTTCAGATCTTAGAAACCC
26761930 TGCCATTTTCAGATCTTAGAAACCC
1 TGCCATTTTCAGATCTTAGAAACCC
26761955 TG
1 TG
26761957 GAGCACATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (25 bp):
TGCCATTTTCAGATCTTAGAAACCC
Found at i:26763863 original size:17 final size:18
Alignment explanation
Indices: 26763841--26763879 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
26763831 TCTTTAGATT
*
26763841 TTTTTTAAAATTTAT-AA
1 TTTTTTAAAATATATAAA
*
26763858 TTTTTTTAAATATATAAA
1 TTTTTTAAAATATATAAA
26763876 TTTT
1 TTTT
26763880 GTAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTTAAAATATATAAA
Found at i:26763877 original size:18 final size:18
Alignment explanation
Indices: 26763840--26763879 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26763830 TTCTTTAGAT
*
26763840 TTTTTTTAAAATTTATAA
1 TTTTTTTAAAATATATAA
26763858 TTTTTTT-AAATATATAAA
1 TTTTTTTAAAATATAT-AA
26763876 TTTT
1 TTTT
26763880 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTTTAAAATATATAA
Found at i:26763884 original size:26 final size:26
Alignment explanation
Indices: 26763846--26763896 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26763836 AGATTTTTTT
26763846 TAAAATTTATAATTTTTTTAAATATA
1 TAAAATTTATAATTTTTTTAAATATA
* *
26763872 TAAATTTTGTAATTTTTTTAAATAT
1 TAAAATTTATAATTTTTTTAAATAT
26763897 TTTGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (26 bp):
TAAAATTTATAATTTTTTTAAATATA
Found at i:26763906 original size:19 final size:20
Alignment explanation
Indices: 26763875--26763947 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
26763865 AAATATATAA
*
26763875 ATTTTGTAATTTTTTTAAA-T
1 ATTTTG-AATTTTTTAAAATT
*
26763895 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTTAAAATT
*
26763914 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTTAAAATT
*
26763934 ATTTTGTATTTTTT
1 ATTTTGAATTTTTT
26763948 TTGTTGAGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 7 0.15
19 11 0.24
20 28 0.61
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.62
Consensus pattern (20 bp):
ATTTTGAATTTTTTAAAATT
Found at i:26768365 original size:23 final size:23
Alignment explanation
Indices: 26768311--26768365 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
26768301 ATTTAAGTTT
*
26768311 AATTTGATACATGAATTATTTTG
1 AATTTGATCCATGAATTATTTTG
26768334 AATTTGATCCATGAATTATTTTG
1 AATTTGATCCATGAATTATTTTG
26768357 AATTTGATC
1 AATTTGATC
26768366 ATATTGTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (23 bp):
AATTTGATCCATGAATTATTTTG
Found at i:26770109 original size:17 final size:18
Alignment explanation
Indices: 26770069--26770110 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
26770059 GACTAAATTG
26770069 TGAAAATGTAAAAGTTTAA
1 TGAAAATGTAAAAG-TTAA
* *
26770088 GGAAAATGTATAA-TTAA
1 TGAAAATGTAAAAGTTAA
26770105 TGAAAA
1 TGAAAA
26770111 GTTAAGGGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.45
19 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAAATGTAAAAGTTAA
Found at i:26781334 original size:26 final size:26
Alignment explanation
Indices: 26781298--26781367 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
26781288 CATTCTGACC
26781298 CACAGCTCATGTGAGCAAGCCCATTT
1 CACAGCTCATGTGAGCAAGCCCATTT
26781324 CACAGCTCATGTGAGCAAGCCCATTT
1 CACAGCTCATGTGAGCAAGCCCATTT
* *
26781350 CACAGCTCGTGTAAGCAA
1 CACAGCTCATGTGAGCAA
26781368 CGATGAAAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (26 bp):
CACAGCTCATGTGAGCAAGCCCATTT
Found at i:26787857 original size:27 final size:27
Alignment explanation
Indices: 26787799--26787861 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26787789 AACACGTTAA
*
26787799 GAAAGGAATGCCTATGTGGCACAATAC
1 GAAAGGAACGCCTATGTGGCACAATAC
* * * * *
26787826 AAAAGGAACGTCTATGTGGCGCATTAT
1 GAAAGGAACGCCTATGTGGCACAATAC
26787853 GAAAGGAAC
1 GAAAGGAAC
26787862 ACCTTTATGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (27 bp):
GAAAGGAACGCCTATGTGGCACAATAC
Found at i:26789918 original size:250 final size:250
Alignment explanation
Indices: 26789477--26789978 Score: 862
Period size: 250 Copynumber: 2.0 Consensus size: 250
26789467 AATGAATACA
*
26789477 ATGAAAGCTCATAAGTGTTTACAAGAACAGGTATGAAAGAATTAAGCTCTTAAGTTGTTTTTATT
1 ATGAAAGCTCATAAGTGTTTACAAGAAAAGGTATGAAAGAATTAAGCTCTTAAGTTGTTTTTATT
*
26789542 GATCTTTAAGCTTTGCACATATCTCTTGTACTTGTGGGACTTTTGGAATATGATATTTATACTCT
66 GATCTTTAAGCTTTGCACATATCTCTTGTACTTGTGGGACTTTTGGAATATGATATTTACACTCT
* *
26789607 CTAATTGATTTCCAATCGTTCTGGTTGTTTACGAATTGGATATAGCCGTTGGGATGGAAATAACA
131 CTAATTGATTTCCAATCGTTCTGGTTGTTAACGAATTGGATATAGCCATTGGGATGGAAATAACA
* *
26789672 GCTGATTAAATTCACCTACAACATTGAGTAT-TGATATTTTTTGTAATTAATGCAT
196 GCTCATTAAATACACCTACAACATTGAGTATCT-ATATTTTTTGTAATTAATGCAT
*
26789727 ATGAAAGCTCATAAGTGTTTACAAGAAAAGGTATGAAAGAATTAAGCTCTTAGGTTGTTTTTATT
1 ATGAAAGCTCATAAGTGTTTACAAGAAAAGGTATGAAAGAATTAAGCTCTTAAGTTGTTTTTATT
**
26789792 GATCTTTAAGCTTTGCACATATCTCTTGTTGTTGTGGGACTTTTGGAATATGATATTTACACTCT
66 GATCTTTAAGCTTTGCACATATCTCTTGTACTTGTGGGACTTTTGGAATATGATATTTACACTCT
* * *
26789857 CTAATTGATTTCCACTCGTTCTGGTTGTTAACGAATTGGATATAGCTATTGGGATGGAAATACCA
131 CTAATTGATTTCCAATCGTTCTGGTTGTTAACGAATTGGATATAGCCATTGGGATGGAAATAACA
* *
26789922 GTTCATTAAATACACCTACAACATTGAGTGTCTATATTTTTTGTAATTAATGCAT
196 GCTCATTAAATACACCTACAACATTGAGTATCTATATTTTTTGTAATTAATGCAT
26789977 AT
1 AT
26789979 TTCAGTGACC
Statistics
Matches: 237, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
250 236 1.00
251 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (250 bp):
ATGAAAGCTCATAAGTGTTTACAAGAAAAGGTATGAAAGAATTAAGCTCTTAAGTTGTTTTTATT
GATCTTTAAGCTTTGCACATATCTCTTGTACTTGTGGGACTTTTGGAATATGATATTTACACTCT
CTAATTGATTTCCAATCGTTCTGGTTGTTAACGAATTGGATATAGCCATTGGGATGGAAATAACA
GCTCATTAAATACACCTACAACATTGAGTATCTATATTTTTTGTAATTAATGCAT
Found at i:26790042 original size:21 final size:21
Alignment explanation
Indices: 26790016--26790055 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26790006 GATACCTGGT
26790016 AAAAGGTATCAATACTTTTTG
1 AAAAGGTATCAATACTTTTTG
*
26790037 AAAAGGTATCGATACTTTT
1 AAAAGGTATCAATACTTTT
26790056 GTCATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (21 bp):
AAAAGGTATCAATACTTTTTG
Found at i:26796120 original size:230 final size:230
Alignment explanation
Indices: 26795717--26796177 Score: 780
Period size: 230 Copynumber: 2.0 Consensus size: 230
26795707 ATGCGAGAGA
26795717 TTTGCTTGAAGACAAGTTAGGATGGACCTTGGAAATCAAAATGATGGACAAGGTAATGGAGTCAA
1 TTTGCTTGAAGACAAGTTAGGATGGACCTTGGAAATCAAAATGATGGACAAGGTAATGGAGTCAA
*
26795782 TCATATGTACAACCTAATCCTTATTGTTGATGATAGGGATCCTACCATAAGACAATACGCTTTGC
66 TCATATGTACAACCTAATCCTTATTGTTGATGATAGGGATCATACCATAAGACAATACGCTTTGC
* * *
26795847 TACTCTTCAATGAATTAAATTCAGGAGTCAGGAGGCTGAATATCAAGGCACCTTATTTTGAATTG
131 TACTCTTCAATGAATTAAATTCAGGAGTCAAGAGGCCGAATATCAAGGCACCTCATTTTGAATTG
* *
26795912 AAACCACTGATGTTTTAAATGCTCTAAATAGTGGG
196 AAACCACTGATGTTTCAAATGCTCTAAAAAGTGGG
*
26795947 TTTGCTTGAAGACAAGTT-GAGATGGACCTTGGAAATCAAAATGGTGGACAAGGTAATGGAGTCA
1 TTTGCTTGAAGACAAGTTAG-GATGGACCTTGGAAATCAAAATGATGGACAAGGTAATGGAGTCA
* * *
26796011 ATCATATGTACAACGTAATCCTTATTGTTGATGATAGGGATCATGCCATAAGAGAATACGCTTTG
65 ATCATATGTACAACCTAATCCTTATTGTTGATGATAGGGATCATACCATAAGACAATACGCTTTG
* *
26796076 CTACTCTTCAATGAATTAAATTCGGGAGTTAAGAGGCCGAATATCAAGGCACCTCATTTTGAATT
130 CTACTCTTCAATGAATTAAATTCAGGAGTCAAGAGGCCGAATATCAAGGCACCTCATTTTGAATT
* *
26796141 GAAACTAGTGATGTTTCAAATGCTCTAAAAAGTGGG
195 GAAACCACTGATGTTTCAAATGCTCTAAAAAGTGGG
26796177 T
1 T
26796178 CGGTTTAGTG
Statistics
Matches: 216, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
229 1 0.00
230 215 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (230 bp):
TTTGCTTGAAGACAAGTTAGGATGGACCTTGGAAATCAAAATGATGGACAAGGTAATGGAGTCAA
TCATATGTACAACCTAATCCTTATTGTTGATGATAGGGATCATACCATAAGACAATACGCTTTGC
TACTCTTCAATGAATTAAATTCAGGAGTCAAGAGGCCGAATATCAAGGCACCTCATTTTGAATTG
AAACCACTGATGTTTCAAATGCTCTAAAAAGTGGG
Found at i:26798637 original size:33 final size:33
Alignment explanation
Indices: 26798576--26798684 Score: 119
Period size: 33 Copynumber: 3.3 Consensus size: 33
26798566 TTTGAATCTT
* * * ***
26798576 ACACACCAGATGCTCACACGAGCCAATCCCTTAA
1 ACACACCA-ATGCTCATAAGAGCTAATCCAACAA
* *
26798610 ACACACTAATGCTCATAAGAGCTAATCCAACCA
1 ACACACCAATGCTCATAAGAGCTAATCCAACAA
*
26798643 ACACACCAATGCTCATAAGAGCTAATCCAACCA
1 ACACACCAATGCTCATAAGAGCTAATCCAACAA
*
26798676 ACACGCCAA
1 ACACACCAA
26798685 ATAAAGTGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
33 58 0.89
34 7 0.11
ACGTcount: A:0.40, C:0.35, G:0.10, T:0.15
Consensus pattern (33 bp):
ACACACCAATGCTCATAAGAGCTAATCCAACAA
Found at i:26809223 original size:16 final size:15
Alignment explanation
Indices: 26809202--26809231 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26809192 GTATAGTAAA
26809202 ATATTTAAAACAAAAC
1 ATATTTAAAA-AAAAC
26809218 ATATTTAAAAAAAA
1 ATATTTAAAAAAAA
26809232 GACACATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (15 bp):
ATATTTAAAAAAAAC
Found at i:26811824 original size:11 final size:11
Alignment explanation
Indices: 26811808--26811832 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26811798 AGTAAAATAT
26811808 ATTATAATTTA
1 ATTATAATTTA
26811819 ATTATAATTTA
1 ATTATAATTTA
26811830 ATT
1 ATT
26811833 TCTCAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTATAATTTA
Done.