Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56894857
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1173888 characters in sequence are not A, C, G, or T
File 85 of 185
Found at i:26811924 original size:15 final size:15
Alignment explanation
Indices: 26811876--26811928 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
26811866 AATCGATTTC
26811876 ATATTAATATAA-TA
1 ATATTAATATAATTA
* *
26811890 AGATT-TTATAAGTTA
1 ATATTAATATAA-TTA
26811905 A-ATTAATATAATTA
1 ATATTAATATAATTA
26811919 ATATTAATAT
1 ATATTAATAT
26811929 TTAAATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 5 0.16
14 11 0.34
15 16 0.50
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (15 bp):
ATATTAATATAATTA
Found at i:26816150 original size:28 final size:28
Alignment explanation
Indices: 26816117--26816170 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
26816107 TCAATTGAAA
26816117 TATTTAGATCAAGAAAAGAATCAATTAT
1 TATTTAGATCAAGAAAAGAATCAATTAT
26816145 TATTTAGATCAAGAAAAGAATCAATT
1 TATTTAGATCAAGAAAAGAATCAATT
26816171 GGACTTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.31
Consensus pattern (28 bp):
TATTTAGATCAAGAAAAGAATCAATTAT
Found at i:26820781 original size:34 final size:34
Alignment explanation
Indices: 26820728--26820794 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
26820718 GCACAGTTGA
* *
26820728 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
* *
26820763 ACAGT-TTGGGCTTCAGCCCATCTCAGTACAGT
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGT
26820795 TCAAAAATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 4 0.14
34 19 0.68
35 5 0.18
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:26826674 original size:25 final size:25
Alignment explanation
Indices: 26826607--26826678 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
26826597 CAGGCCCATT
* *
26826607 TTCACAGCTTGTGTGAGCATACCGA
1 TTCACAGCTTATGTGAGCATACCAA
* * * *
26826632 TCCATAGCTTACGCGAGCATACCAA
1 TTCACAGCTTATGTGAGCATACCAA
*
26826657 TTCACAGCTCATGTGAGCATAC
1 TTCACAGCTTATGTGAGCATAC
26826679 ATGTATAGGA
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (25 bp):
TTCACAGCTTATGTGAGCATACCAA
Found at i:26830207 original size:5 final size:5
Alignment explanation
Indices: 26830197--26830259 Score: 81
Period size: 5 Copynumber: 12.6 Consensus size: 5
26830187 ATATATATAT
* * * * *
26830197 ATTCC ATTCC ATACC ATTCC ATTCC ATACT ATTCC ATTTC ATACC ATTCC
1 ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC
26830247 ATTCC ATTCC ATT
1 ATTCC ATTCC ATT
26830260 TCATCAAGCA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCC
Found at i:26830217 original size:15 final size:15
Alignment explanation
Indices: 26830197--26830259 Score: 99
Period size: 15 Copynumber: 4.2 Consensus size: 15
26830187 ATATATATAT
26830197 ATTCCATTCCATACC
1 ATTCCATTCCATACC
*
26830212 ATTCCATTCCATACT
1 ATTCCATTCCATACC
*
26830227 ATTCCATTTCATACC
1 ATTCCATTCCATACC
*
26830242 ATTCCATTCCATTCC
1 ATTCCATTCCATACC
26830257 ATT
1 ATT
26830260 TCATCAAGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTCCATTCCATACC
Found at i:26831327 original size:51 final size:51
Alignment explanation
Indices: 26831157--26831607 Score: 312
Period size: 51 Copynumber: 8.9 Consensus size: 51
26831147 ACTATTATCA
* * * * *
26831157 TTCGATACACATAGTAGTCTTCACATAGTACTACACACGTGATC-AA-TTT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
* * * * * * * *
26831206 TTGCGATTCACGTAATAGCCTTCATACAGTACTACACACGTGATC-AAG-TT
1 TT-CGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
** * * * * *
26831256 TTATAGT-TACGTAGTAGCCTTCACATAGTACTCCATATGTGACTAAAGCTT
1 TT-CGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
* * *
26831307 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGA-C-TATCATT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGC-TT
** * * *
26831357 TATCAATTCACGTAGTAGCCTTCACACAGTACTACACATGTGACCAAAGCTT
1 T-TCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
* * * * *
26831409 CTCGGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCA-AAGCTT
* * * * * *
26831459 TATCGATTCACGTAATAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
* * * * *
26831511 CTCGGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCA-AAGCTT
* * * * *
26831561 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
1 T-TCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAA
26831608 CACTTTCACT
Statistics
Matches: 308, Mismatches: 79, Indels: 29
0.74 0.19 0.07
Matches are distributed among these distances:
49 32 0.10
50 56 0.18
51 211 0.69
52 7 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (51 bp):
TTCGGTACACATAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTT
Found at i:26831624 original size:102 final size:102
Alignment explanation
Indices: 26831264--26831607 Score: 571
Period size: 102 Copynumber: 3.4 Consensus size: 102
26831254 TTTTATAGTT
* * * * * * * *
26831264 ACGTAGTAGCCTTCACATAGTACTCCATATGTGACTAAAGCTTTTCGGTACACATAGTAGCCTTC
1 ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
* * *
26831329 ACTTAGTACTACACATGTGACTATCATTTATCAATTC
66 ACTTAGTACTACACATGTGACCATTATTTATCGATTC
*
26831366 ACGTAGTAGCCTTCACACAGTACTACACATGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
1 ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
26831431 ACTTAGTACTACACATGTGACCATTATTTATCGATTC
66 ACTTAGTACTACACATGTGACCATTATTTATCGATTC
*
26831468 ACGTAATAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
1 ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
26831533 ACTTAGTACTACACATGTGACCATTATTTATCGATTC
66 ACTTAGTACTACACATGTGACCATTATTTATCGATTC
26831570 ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
1 ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
26831608 CACTTTCACT
Statistics
Matches: 229, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 229 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (102 bp):
ACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTTC
ACTTAGTACTACACATGTGACCATTATTTATCGATTC
Found at i:26831857 original size:15 final size:16
Alignment explanation
Indices: 26831828--26831859 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26831818 AATCCAGTCC
26831828 AAAAATCACATTTTTG
1 AAAAATCACATTTTTG
*
26831844 AAAAATTACATTTTTG
1 AAAAATCACATTTTTG
26831860 CCCCTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATCACATTTTTG
Found at i:26833031 original size:54 final size:54
Alignment explanation
Indices: 26832949--26833055 Score: 214
Period size: 54 Copynumber: 2.0 Consensus size: 54
26832939 TACTTAGATT
26832949 ACCATGTAATGTTTCTCAAACTTGCAAAGGAAACATCACTTTAGTTTTTTTTTA
1 ACCATGTAATGTTTCTCAAACTTGCAAAGGAAACATCACTTTAGTTTTTTTTTA
26833003 ACCATGTAATGTTTCTCAAACTTGCAAAGGAAACATCACTTTAGTTTTTTTTT
1 ACCATGTAATGTTTCTCAAACTTGCAAAGGAAACATCACTTTAGTTTTTTTTT
26833056 TAAATTTATC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (54 bp):
ACCATGTAATGTTTCTCAAACTTGCAAAGGAAACATCACTTTAGTTTTTTTTTA
Found at i:26833973 original size:18 final size:19
Alignment explanation
Indices: 26833947--26833982 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26833937 CTAATTTTTC
*
26833947 TTCCAAAACTATTTTTACT
1 TTCCAAAACTATTATTACT
26833966 TTCC-AAACTATTATTAC
1 TTCCAAAACTATTATTAC
26833983 CTCTGTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (19 bp):
TTCCAAAACTATTATTACT
Found at i:26835585 original size:5 final size:5
Alignment explanation
Indices: 26835575--26835627 Score: 70
Period size: 5 Copynumber: 10.6 Consensus size: 5
26835565 TCATATATAT
* * * *
26835575 ATTCC ATTCC ATTCC ATACT ATTCC ATTTC ATACC ATTCC ATTCC ATTCC
1 ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC
26835625 ATT
1 ATT
26835628 TCATCAAGCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.42
Consensus pattern (5 bp):
ATTCC
Found at i:26836600 original size:50 final size:50
Alignment explanation
Indices: 26836540--26836666 Score: 200
Period size: 50 Copynumber: 2.5 Consensus size: 50
26836530 TACACGTAGG
* * *
26836540 AGCCTTCACATAGTATTACACACGTGATCAATTTTTACGGTTCACATAAT
1 AGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAGTTCACATAAT
* *
26836590 AGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAGTTCACGTAGT
1 AGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAGTTCACATAAT
*
26836640 AGCCTTCACACAGTACTACACACGTGA
1 AGCCTTCACATAGTACTACACACGTGA
26836667 CCAACACTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (50 bp):
AGCCTTCACATAGTACTACACACGTGATCAAGTTTTACAGTTCACATAAT
Found at i:26836827 original size:104 final size:104
Alignment explanation
Indices: 26836642--26836958 Score: 625
Period size: 104 Copynumber: 3.0 Consensus size: 104
26836632 CACGTAGTAG
26836642 CCTTCACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTC
1 CCTT-ACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTC
26836707 GTGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
65 GTGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
26836747 CCTTACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTCG
1 CCTTACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTCG
26836812 TGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
66 TGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
26836851 CCTTACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTCG
1 CCTTACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTCG
26836916 TGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
66 TGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
26836955 CCTT
1 CCTT
26836959 TTTTTATTCC
Statistics
Matches: 212, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
104 208 0.98
105 4 0.02
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (104 bp):
CCTTACACAGTACTACACACGTGACCAACACTTTCACTTTCATATAGTGGCCTACACACAGTTCG
TGCCACATGTGAAAGCATTTCTGTCACTTCATTCATATC
Found at i:26836912 original size:51 final size:51
Alignment explanation
Indices: 26836636--26836912 Score: 200
Period size: 51 Copynumber: 5.4 Consensus size: 51
26836626 ACAGTTCACG
* *
26836636 TAGTAGCCTTCACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
1 TAGTGGCCTACACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
* * * *
26836687 TAGTGGCCTACACACAGTTCGTGCCACATGTGA--AAGCATTTCTGTCAC-TTCATTCA
1 TAGTGGCCTACACACAGTAC-T-ACACACGTGACCAA-CA---CTTTCACTTTCA-T-A
* *
26836743 TA-T-CCCT-TACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
1 TAGTGGCCTACACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
* * * *
26836791 TAGTGGCCTACACACAGTTCGTGCCACATGTGA--AAGCATTTCTGTCAC-TTCATTCA
1 TAGTGGCCTACACACAGTAC-T-ACACACGTGACCAA-CA---CTTTCACTTTCA-T-A
* *
26836847 TA-T-CCCT-TACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
1 TAGTGGCCTACACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
26836895 TAGTGGCCTACACACAGT
1 TAGTGGCCTACACACAGT
26836913 TCGTGCCACA
Statistics
Matches: 172, Mismatches: 26, Indels: 56
0.68 0.10 0.22
Matches are distributed among these distances:
48 6 0.03
49 16 0.09
50 14 0.08
51 52 0.30
52 12 0.07
53 36 0.21
54 14 0.08
55 16 0.09
56 6 0.03
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (51 bp):
TAGTGGCCTACACACAGTACTACACACGTGACCAACACTTTCACTTTCATA
Found at i:26839313 original size:26 final size:27
Alignment explanation
Indices: 26839259--26839315 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26839249 AATTTTAAAA
* * *
26839259 TATTTTTAAAATAATTTTTTTATTTTT
1 TATTTTTAAAATAATATTTTTAGTATT
*
26839286 TATTTTTAAAATAA-ATTTTTGGTATT
1 TATTTTTAAAATAATATTTTTAGTATT
26839312 TATT
1 TATT
26839316 AAAAAAATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
TATTTTTAAAATAATATTTTTAGTATT
Found at i:26842006 original size:18 final size:17
Alignment explanation
Indices: 26841973--26842011 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26841963 TTTTATAAAT
26841973 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
26841991 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
26842008 TGTG
1 TGTG
26842012 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:26842256 original size:23 final size:23
Alignment explanation
Indices: 26842229--26842350 Score: 185
Period size: 23 Copynumber: 5.3 Consensus size: 23
26842219 AATGTTATTG
26842229 ATCAGTGGTAGCTTCGGCTACA-
1 ATCAGTGGTAGCTTCGGCTACAT
26842251 ATTCAGTGGTAGCTAT-GGCTACAT
1 A-TCAGTGGTAGCT-TCGGCTACAT
26842275 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
26842298 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
26842321 ATCAGTGGTAGCTCCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
26842344 ATCAGTG
1 ATCAGTG
26842351 TGGCACTTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
22 2 0.02
23 88 0.96
24 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:26846116 original size:3 final size:3
Alignment explanation
Indices: 26846108--26846146 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26846098 TTCACCAATT
26846108 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26846147 ACAAAAGGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26846565 original size:17 final size:17
Alignment explanation
Indices: 26846543--26846580 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26846533 ATATTATGTA
26846543 ATTATTTGAAATTAT-AT
1 ATTATTT-AAATTATAAT
*
26846560 ATTATTTATATTATAAT
1 ATTATTTAAATTATAAT
26846577 ATTA
1 ATTA
26846581 GGTAATAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTATTTAAATTATAAT
Found at i:26846937 original size:6 final size:7
Alignment explanation
Indices: 26846919--26846948 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
26846909 AGAAATATTA
26846919 TAAAAAT
1 TAAAAAT
26846926 TAAAAAT
1 TAAAAAT
*
26846933 TAAAAAA
1 TAAAAAT
26846940 TAAAAAT
1 TAAAAAT
26846947 TA
1 TA
26846949 TAATTCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAAAT
Found at i:26848068 original size:8 final size:8
Alignment explanation
Indices: 26848055--26848079 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26848045 GATTTTTGGG
26848055 AAATTTTA
1 AAATTTTA
26848063 AAATTTTA
1 AAATTTTA
26848071 AAATTTTA
1 AAATTTTA
26848079 A
1 A
26848080 TTTTTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTTTA
Found at i:26861182 original size:19 final size:18
Alignment explanation
Indices: 26861154--26861189 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26861144 CCTTAATCTC
*
26861154 TTTTCCAATTTTCTTTTCT
1 TTTTCAAATTTT-TTTTCT
26861173 TTTTCAAATTTTTTTTC
1 TTTTCAAATTTTTTTTC
26861190 ACTTTCAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTCAAATTTTTTTTCT
Found at i:26861195 original size:18 final size:19
Alignment explanation
Indices: 26861155--26861197 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26861145 CTTAATCTCT
* **
26861155 TTTCCAATTTTCTTTTCTT
1 TTTCAAATTTTCTTTTCAC
26861174 TTTCAAATTTT-TTTTCAC
1 TTTCAAATTTTCTTTTCAC
26861192 TTTCAA
1 TTTCAA
26861198 TATATTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTCAAATTTTCTTTTCAC
Found at i:26862087 original size:25 final size:25
Alignment explanation
Indices: 26862053--26862103 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26862043 AGTATGGAAC
26862053 TCACTTGATCGAGATTACAAAGGGA
1 TCACTTGATCGAGATTACAAAGGGA
*
26862078 TCACTTGATCGGGATTACAAAGGGA
1 TCACTTGATCGAGATTACAAAGGGA
26862103 T
1 T
26862104 GAATAAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (25 bp):
TCACTTGATCGAGATTACAAAGGGA
Found at i:26869486 original size:17 final size:17
Alignment explanation
Indices: 26869464--26869518 Score: 110
Period size: 17 Copynumber: 3.2 Consensus size: 17
26869454 AAGTAGGGGA
26869464 CACACGGTCGTGTGCCT
1 CACACGGTCGTGTGCCT
26869481 CACACGGTCGTGTGCCT
1 CACACGGTCGTGTGCCT
26869498 CACACGGTCGTGTGCCT
1 CACACGGTCGTGTGCCT
26869515 CACA
1 CACA
26869519 TGGTTGAGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.22
Consensus pattern (17 bp):
CACACGGTCGTGTGCCT
Found at i:26873803 original size:25 final size:25
Alignment explanation
Indices: 26873765--26873823 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
26873755 GTATGCTCAT
* * **
26873765 ACGAGTTGTGAATCGGCCTGCCCTC
1 ACGAGCTGTAAATCGGCAAGCCCTC
* *
26873790 ACGAGCTGTAAATCGGTAAGCTCTC
1 ACGAGCTGTAAATCGGCAAGCCCTC
26873815 ACGAGCTGT
1 ACGAGCTGT
26873824 GGGTCGGAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (25 bp):
ACGAGCTGTAAATCGGCAAGCCCTC
Found at i:26877864 original size:25 final size:25
Alignment explanation
Indices: 26877836--26877912 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
26877826 ATGCTCTGTT
26877836 GAGCTAGAAATCGGTAAGCTCATAC
1 GAGCTAGAAATCGGTAAGCTCATAC
*
26877861 GAGCT-GAGAATCGATAAGCTC-TCAC
1 GAGCTAGA-AATCGGTAAGCTCAT-AC
* * *
26877886 AAGTTAGAAATTGGTAAGCTCATAC
1 GAGCTAGAAATCGGTAAGCTCATAC
26877911 GA
1 GA
26877913 CCTGTGGTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
24 3 0.07
25 36 0.86
26 3 0.07
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.22
Consensus pattern (25 bp):
GAGCTAGAAATCGGTAAGCTCATAC
Found at i:26881185 original size:43 final size:43
Alignment explanation
Indices: 26881124--26881428 Score: 384
Period size: 43 Copynumber: 7.1 Consensus size: 43
26881114 AAAAACACCA
*
26881124 CTAAAGAACATGATCTTTAGCGACGCTTTACCCACAAACGCCG
1 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
* *
26881167 CTAAAGAACATGACCTTTAGTGGCGCTTTACCCACAAACGCCG
1 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
** * *
26881210 CTAAAGAACATGAGATTTA-CTGGCGCTTTTA-TCAAAAACGCCG
1 CTAAAGAACATGATCTTTAGC-GGCGC-TTTACCCACAAACGCCG
*
26881253 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCATAAACGCCG
1 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
* * * * * *
26881296 CTAAAAAACATGATCTTTAGAGGCACTTTGCCCACAAATGCCA
1 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
* * *
26881339 CTAAAGAACATGATCTTTAGCTGTGCTTTACCCACAAACGCCA
1 CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
* *
26881382 CTAAAG-ACATGATTTTTAGCGGCGCTTTTA-TCACAAACGCCG
1 CTAAAGAACATGATCTTTAGCGGCGC-TTTACCCACAAACGCCG
26881424 CTAAA
1 CTAAA
26881429 AGTACGTTCT
Statistics
Matches: 226, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
42 35 0.15
43 186 0.82
44 5 0.02
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
CTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAACGCCG
Found at i:26883889 original size:28 final size:28
Alignment explanation
Indices: 26883841--26883897 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
26883831 GCCCCCCCCC
26883841 ACCAACCCCCCCCAAAAAAAACTATCAA
1 ACCAACCCCCCCCAAAAAAAACTATCAA
* *
26883869 ACCACACCTCCCCC-AAGAAAACTATCAA
1 ACCA-ACCCCCCCCAAAAAAAACTATCAA
26883897 A
1 A
26883898 ATAAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.47, C:0.42, G:0.02, T:0.09
Consensus pattern (28 bp):
ACCAACCCCCCCCAAAAAAAACTATCAA
Found at i:26887453 original size:41 final size:41
Alignment explanation
Indices: 26887255--26887546 Score: 225
Period size: 41 Copynumber: 7.1 Consensus size: 41
26887245 TAAATTATTT
* *
26887255 TAAATCCCTAAGCATTAGCGGCGCTTT-TTAGAAAACGCCGC
1 TAAAGCCCTAAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
*** * * *
26887296 TAAA--AAGAGAGCATTAGCGGTGCTTACACAAAAACGCCGC
1 TAAAGCCCTA-AGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * * ** * * * *
26887336 TAAAGCCTTGAGCATTCGTGGCATTTTTTTAGGAAATGCCGC
1 TAAAGCCCTAAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
* * * * * *
26887378 TAAAGCCTTGAGCATTAGCGGTGC-CTCATAAAAAACGCAGC
1 TAAAGCCCTAAGCATTAGCGGCGCTTTC-TCAAAAACGCCGC
* * *
26887419 TAAATCCCTGAA-CATTAGCGCCGCTTTCTCAAAAAAAGCCGC
1 TAAAGCCCT-AAGCATTAGCGGCGCTTTCTC-AAAAACGCCGC
* *
26887461 TAAAGCCCTAAGCATTAGCGGGGCTTTCCCAAAAACGCCGC
1 TAAAGCCCTAAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
*
26887502 TAAAGCCCTAAGCATTAGCGGCGCTTTATCAAAAACGCCGC
1 TAAAGCCCTAAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
26887543 TAAA
1 TAAA
26887547 ACCCCGAAAG
Statistics
Matches: 191, Mismatches: 50, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
39 1 0.01
40 29 0.15
41 97 0.51
42 64 0.34
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (41 bp):
TAAAGCCCTAAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:26887460 original size:83 final size:82
Alignment explanation
Indices: 26887373--26887546 Score: 208
Period size: 83 Copynumber: 2.1 Consensus size: 82
26887363 TTTAGGAAAT
* * * * *
26887373 GCCGCTAAAGCCTTGAGCATTAGCGGTGC-CTCATAAAAAACGCAGCTAAATCCCTGAA-CATTA
1 GCCGCTAAAGCCCTAAGCATTAGCGGGGCTCTC-CAAAAAACGCAGCTAAAGCCCT-AAGCATTA
*
26887436 GCGCCGCTTTCTCAAAAAAA
64 GCGCCGCTTTATC-AAAAAA
* * *
26887456 GCCGCTAAAGCCCTAAGCATTAGCGGGGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGC
1 GCCGCTAAAGCCCTAAGCATTAGCGGGGCTCTCCAAAAAACGCAGCTAAAGCCCTAAGCATTAGC
* *
26887521 GGCGCTTTATCAAAAAC
66 GCCGCTTTATCAAAAAA
26887538 GCCGCTAAA
1 GCCGCTAAA
26887547 ACCCCGAAAG
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
82 16 0.21
83 60 0.77
84 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (82 bp):
GCCGCTAAAGCCCTAAGCATTAGCGGGGCTCTCCAAAAAACGCAGCTAAAGCCCTAAGCATTAGC
GCCGCTTTATCAAAAAA
Found at i:26887720 original size:40 final size:41
Alignment explanation
Indices: 26887614--26887720 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 41
26887604 GAAAATGCCA
* * *
26887614 CTAATGCT-TATTCTTAGCGGCA-TTTTCCATAACGCGCCG
1 CTAATGCTCGATTTTTAGCGGCATTTTTCCATAAAGCGCCG
* * * * *
26887653 CTAATGTTCGATCTTTAGCGGCGTTTTTCGA-AAAGCGTCG
1 CTAATGCTCGATTTTTAGCGGCATTTTTCCATAAAGCGCCG
26887693 CTAATGCTCGATTTTTAGCGGCATTTTT
1 CTAATGCTCGATTTTTAGCGGCATTTTT
26887721 TATCCAAACG
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
39 7 0.13
40 42 0.76
41 6 0.11
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (41 bp):
CTAATGCTCGATTTTTAGCGGCATTTTTCCATAAAGCGCCG
Found at i:26893259 original size:34 final size:34
Alignment explanation
Indices: 26893219--26893292 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 34
26893209 AGCATATATT
*
26893219 TATACTTATCAAGT-ACATGTGCCGAATGC-ACATA
1 TATACTTAT-AA-TCACATATGCCGAATGCAACATA
26893253 TATACTTATAATCCACATATGCCGAATGCATACATA
1 TATACTTATAAT-CACATATGCCGAATGCA-ACATA
26893289 TATA
1 TATA
26893293 TATCCAACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
32 1 0.03
33 2 0.06
34 23 0.66
36 9 0.26
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (34 bp):
TATACTTATAATCACATATGCCGAATGCAACATA
Found at i:26893560 original size:42 final size:41
Alignment explanation
Indices: 26893460--26893612 Score: 234
Period size: 41 Copynumber: 3.7 Consensus size: 41
26893450 TTAGTTTAAA
*
26893460 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTAATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* *
26893502 CAGTTCACTGGCACTTAGCCTGCTAGGCTTATAAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAA-CCTGATT
* * *
26893544 CAGATCACCGGTACTTAGCTTGCTAAGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
26893585 CAGATCACCGGCACTTAGCCTGCTAGGC
1 CAGATCACCGGCACTTAGCCTGCTAGGC
26893613 GCTAAGCCTA
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
41 61 0.62
42 38 0.38
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
Found at i:26896749 original size:45 final size:44
Alignment explanation
Indices: 26896686--26896849 Score: 150
Period size: 45 Copynumber: 3.6 Consensus size: 44
26896676 AGCACACAGC
* ** ** *
26896686 ACCACCCTTATAGTCAATGATACTAGGTGGAACCAGGACATAGA-A
1 ACCA-CCTTATAATCAATGATACCCGGTGGAACCAACACACA-ATA
* * *
26896731 GCCACCTTCATAATCAATGGTACCCGGTGGAATCAACACACAATA
1 ACCACCTT-ATAATCAATGATACCCGGTGGAACCAACACACAATA
* * * *
26896776 ACCACCTTTATAATCAATGATACCCGGTGGAATCAGCATACAACA
1 ACCACC-TTATAATCAATGATACCCGGTGGAACCAACACACAATA
*
26896821 ACCACCATTATAATCAATGCTACCCGGTG
1 ACCACC-TTATAATCAATGATACCCGGTG
26896850 CACGTAGTAG
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
44 5 0.05
45 93 0.93
46 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (44 bp):
ACCACCTTATAATCAATGATACCCGGTGGAACCAACACACAATA
Found at i:26896787 original size:90 final size:90
Alignment explanation
Indices: 26896686--26896849 Score: 208
Period size: 90 Copynumber: 1.8 Consensus size: 90
26896676 AGCACACAGC
* * * *
26896686 ACCACCCTTATAGTCAATGATACTAGGTGGAACCAGGACATA-GA-AGCCACC-TTCATAATCAA
1 ACCACCCTTATAATCAATGATACCAGGTGGAACCA-G-CATACAACAACCACCATT-ATAATCAA
*
26896748 TGGTACCCGGTGGAATCAACACACAATA
63 TGCTACCCGGTGGAATCAACACACAATA
* * *
26896776 ACCACCTTTATAATCAATGATACCCGGTGGAATCAGCATACAACAACCACCATTATAATCAATGC
1 ACCACCCTTATAATCAATGATACCAGGTGGAACCAGCATACAACAACCACCATTATAATCAATGC
26896841 TACCCGGTG
66 TACCCGGTG
26896850 CACGTAGTAG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
88 4 0.06
89 2 0.03
90 55 0.87
91 2 0.03
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (90 bp):
ACCACCCTTATAATCAATGATACCAGGTGGAACCAGCATACAACAACCACCATTATAATCAATGC
TACCCGGTGGAATCAACACACAATA
Found at i:26907502 original size:15 final size:15
Alignment explanation
Indices: 26907484--26907520 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
26907474 GGCTGTGTGT
26907484 CACACACGGCTGAGA
1 CACACACGGCTGAGA
26907499 CACACACGGCTGAGA
1 CACACACGGCTGAGA
26907514 CACACAC
1 CACACAC
26907521 CCGTGTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.38, G:0.22, T:0.05
Consensus pattern (15 bp):
CACACACGGCTGAGA
Found at i:26915038 original size:25 final size:25
Alignment explanation
Indices: 26914998--26915067 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
26914988 TCATGTACCT
* *
26914998 GTATGCTCACATGAGCTGTGAATCG
1 GTATGCTCTCACGAGCTGTGAATCG
* *
26915023 GTATGCTCTCACGAGCTGTAAATTG
1 GTATGCTCTCACGAGCTGTGAATCG
* *
26915048 GTATACTCTCACGAGTTGTG
1 GTATGCTCTCACGAGCTGTG
26915068 GGTGAAATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTGTGAATCG
Found at i:26918404 original size:18 final size:18
Alignment explanation
Indices: 26918383--26918438 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
26918373 ATTTAATTTA
26918383 AATATATGTGATAATGTG
1 AATATATGTGATAATGTG
26918401 -A-ATAT-TG--AAT-TG
1 AATATATGTGATAATGTG
26918413 AATATATGTGATAATGT-
1 AATATATGTGATAATGTG
26918430 ATATATATG
1 A-ATATATG
26918439 AGATTGGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
12 2 0.06
13 4 0.13
14 4 0.13
15 4 0.13
16 4 0.13
17 5 0.16
18 8 0.26
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (18 bp):
AATATATGTGATAATGTG
Found at i:26918435 original size:16 final size:16
Alignment explanation
Indices: 26918384--26918435 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26918374 TTTAATTTAA
26918384 ATATATGTGATAATGT
1 ATATATGTGATAATGT
* *
26918400 GA-ATAT-TGA-ATTGA
1 -ATATATGTGATAATGT
26918414 ATATATGTGATAATGT
1 ATATATGTGATAATGT
26918430 ATATAT
1 ATATAT
26918436 ATGAGATTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
13 1 0.04
14 7 0.25
15 6 0.21
16 13 0.46
17 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (16 bp):
ATATATGTGATAATGT
Found at i:26918785 original size:20 final size:20
Alignment explanation
Indices: 26918762--26918816 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
26918752 ATGAAATTTA
26918762 AATATGTGAAATGGAAATAC
1 AATATGTGAAATGGAAATAC
* *
26918782 AATATGTAAAATGGAAATGC
1 AATATGTGAAATGGAAATAC
*
26918802 AATATGTGACATGGA
1 AATATGTGAAATGGA
26918817 TTGGAATGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.47, C:0.05, G:0.22, T:0.25
Consensus pattern (20 bp):
AATATGTGAAATGGAAATAC
Found at i:26920344 original size:17 final size:17
Alignment explanation
Indices: 26920322--26920354 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26920312 CACTAACATT
*
26920322 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
26920339 AAAATGCAACGACAAT
1 AAAATGCAACGACAAT
26920355 GTGCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:26922284 original size:50 final size:50
Alignment explanation
Indices: 26922230--26922338 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
26922220 CATCCCAAAT
* ** *
26922230 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATC-CCATGTCCCAGAC
1 ATGGTCTTACAGGGGACCTCTCATATCGGTG-CCAACGCCATGTCCCAGAC
* * * *
26922280 ATGGTCTCACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGGC
1 ATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
26922330 ATGGTCTTA
1 ATGGTCTTA
26922339 TGTGAGACAT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 4 0.08
50 45 0.92
ACGTcount: A:0.18, C:0.31, G:0.25, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
Found at i:26927184 original size:26 final size:26
Alignment explanation
Indices: 26927155--26927205 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26927145 CCCGATATAT
*
26927155 GGCTCTTAGTGAGCTTCCTGATTAAA
1 GGCTCTTACTGAGCTTCCTGATTAAA
*
26927181 GGCTCTTTCTGAGCTTCCTGATTAA
1 GGCTCTTACTGAGCTTCCTGATTAA
26927206 TGTTTCTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GGCTCTTACTGAGCTTCCTGATTAAA
Found at i:26927317 original size:24 final size:24
Alignment explanation
Indices: 26927290--26927341 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
26927280 GGCTCTTCAA
*
26927290 AGCTACC-CATTATTGGCTCGTATG
1 AGCTACCTAATTA-TGGCTCGTATG
* *
26927314 AGCTTCCTAATTATGGCTCTTATG
1 AGCTACCTAATTATGGCTCGTATG
26927338 AGCT
1 AGCT
26927342 TCCTGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (24 bp):
AGCTACCTAATTATGGCTCGTATG
Found at i:26927342 original size:24 final size:25
Alignment explanation
Indices: 26927298--26927345 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
26927288 AAAGCTACCC
26927298 ATTATTGGCTCGTATGAGCTTCCTA
1 ATTATTGGCTCGTATGAGCTTCCTA
*
26927323 ATTA-TGGCTCTTATGAGCTTCCT
1 ATTATTGGCTCGTATGAGCTTCCT
26927346 GTTATATAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (25 bp):
ATTATTGGCTCGTATGAGCTTCCTA
Found at i:26930721 original size:14 final size:14
Alignment explanation
Indices: 26930702--26930731 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26930692 GCAAAAATTA
26930702 AAAGAAAGAAAAAG
1 AAAGAAAGAAAAAG
*
26930716 AAAGAAAGAACAAG
1 AAAGAAAGAAAAAG
26930730 AA
1 AA
26930732 GAGACCGACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:26931222 original size:78 final size:78
Alignment explanation
Indices: 26931043--26931209 Score: 262
Period size: 78 Copynumber: 2.1 Consensus size: 78
26931033 AAAATAGAGA
* *
26931043 ACTAAATTTAGCTTAGAGTAAAATTAGTATAAAAATTTGAGGTTAAATATGGGTATTAAAATCAG
1 ACTAAATTTAGCTTAGAGTAAAATTAGTATAAAAATTTGAGGTTAAATACGAGTATTAAAATCAG
**
26931108 TATTGGTTTAGGG
66 TATTGAATTAGGG
* *
26931121 ACTAAATTTATCTTAGAGTAAAATTAGTATAAAAATTTGAGGTTAAATACGAGTATTAAAATTAG
1 ACTAAATTTAGCTTAGAGTAAAATTAGTATAAAAATTTGAGGTTAAATACGAGTATTAAAATCAG
* *
26931186 TCTTGAATTCGGG
66 TATTGAATTAGGG
26931199 ACTAAATTTAG
1 ACTAAATTTAG
26931210 AATTAAGCAA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (78 bp):
ACTAAATTTAGCTTAGAGTAAAATTAGTATAAAAATTTGAGGTTAAATACGAGTATTAAAATCAG
TATTGAATTAGGG
Found at i:26944458 original size:6 final size:6
Alignment explanation
Indices: 26944447--26944479 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
26944437 ATCAAAAGTG
*
26944447 TTCCTT TTCCTT TTCCTT TTCCTT TTCTTT TTC
1 TTCCTT TTCCTT TTCCTT TTCCTT TTCCTT TTC
26944480 ATAGATGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (6 bp):
TTCCTT
Found at i:26960024 original size:40 final size:40
Alignment explanation
Indices: 26959977--26960205 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
26959967 TAAAGCACGA
*
26959977 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGC
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
* * * * * *
26960017 ATATGCATTCAAGGGTACCGAAGTATAAACAGGAGCATTT
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
* * ** *
26960057 ATGTTCATTCAGGGGTACCAAAGTACAAACAAAAGCACGT
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
* ** *
26960097 ATGTGCATTCAAGGGTACTGAAGTACAAATAGGAGCACGT
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
* * *
26960137 ATGTTCATTTAGGGGTACCAAAGTACAAATAGGAGCATGC
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
* * *
26960177 ATGTGCATTTAGGGGTAGCGAAGTACAAA
1 ATGTGCATTCAGGGGTACCAAAGTACAAA
26960206 CAGGGGCAAT
Statistics
Matches: 156, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (40 bp):
ATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGT
Found at i:26960080 original size:80 final size:80
Alignment explanation
Indices: 26959970--26960209 Score: 327
Period size: 80 Copynumber: 3.0 Consensus size: 80
26959960 GTTCATTTAA
* * *
26959970 AGCACGAATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATATGCATTCAAGGGTAC
1 AGCACGTATGTTCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATGTGCATTCAAGGGTAC
*
26960035 CGAAGTATAAACAGG
66 CGAAGTACAAACAGG
** * ** * *
26960050 AGCATTTATGTTCATTCAGGGGTACCAAAGTACAAACAAAAGCACGTATGTGCATTCAAGGGTAC
1 AGCACGTATGTTCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATGTGCATTCAAGGGTAC
* *
26960115 TGAAGTACAAATAGG
66 CGAAGTACAAACAGG
* * * *
26960130 AGCACGTATGTTCATTTAGGGGTACCAAAGTACAAATAGGAGCATGCATGTGCATTTAGGGGTAG
1 AGCACGTATGTTCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATGTGCATTCAAGGGTAC
26960195 CGAAGTACAAACAGG
66 CGAAGTACAAACAGG
26960210 GGCAATAATG
Statistics
Matches: 134, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 134 1.00
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (80 bp):
AGCACGTATGTTCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATGTGCATTCAAGGGTAC
CGAAGTACAAACAGG
Found at i:26960191 original size:120 final size:120
Alignment explanation
Indices: 26959968--26960207 Score: 309
Period size: 120 Copynumber: 2.0 Consensus size: 120
26959958 AAGTTCATTT
* *
26959968 AAAGCACGAATGTGCATTCAGGGGTACCAAAGTACAAATAGGAGCATGCATATGCATTCAAGGGT
1 AAAGCACGAATGTGCATTCAAGGGTACCAAAGTACAAATAGGAGCACGCATATGCATTCAAGGGT
* * ** *
26960033 ACCGAAGTATAAACAGGAGCATTTATGTTCATTCAGGGGTACCAAAGTACAAACA
66 ACCAAAGTACAAACAGGAGCATGCATGTGCATTCAGGGGTACCAAAGTACAAACA
* ** * * * * *
26960088 AAAGCACGTATGTGCATTCAAGGGTACTGAAGTACAAATAGGAGCACGTATGTTCATTTAGGGGT
1 AAAGCACGAATGTGCATTCAAGGGTACCAAAGTACAAATAGGAGCACGCATATGCATTCAAGGGT
* * * *
26960153 ACCAAAGTACAAATAGGAGCATGCATGTGCATTTAGGGGTAGCGAAGTACAAACA
66 ACCAAAGTACAAACAGGAGCATGCATGTGCATTCAGGGGTACCAAAGTACAAACA
26960208 GGGGCAATAA
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 101 1.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (120 bp):
AAAGCACGAATGTGCATTCAAGGGTACCAAAGTACAAATAGGAGCACGCATATGCATTCAAGGGT
ACCAAAGTACAAACAGGAGCATGCATGTGCATTCAGGGGTACCAAAGTACAAACA
Found at i:26960226 original size:40 final size:40
Alignment explanation
Indices: 26959970--26960226 Score: 192
Period size: 40 Copynumber: 6.4 Consensus size: 40
26959960 GTTCATTTAA
* * * *
26959970 AGCACGAATGTGCATTCAGGGGTACCAAAGTACAAATAGG
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
* * * * * * *
26960010 AGCATGCATATGCATTCAAGGGTACCGAAGTATAAACAGG
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
** * * **
26960050 AGCATTTATGTTCATTCAGGGGTACCAAAGTACAAACAAA
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
* * * * * ** *
26960090 AGCACGTATGTGCATTCAAGGGTACTGAAGTACAAATAGG
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
* * * *
26960130 AGCACGTATGTTCATTTAGGGGTACCAAAGTACAAATAGG
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
* * * *
26960170 AGCATGCATGTGCATTTAGGGGTAGCGAAGTACAAACAGG
1 AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
*
26960210 GGCAAT-AATGTACATTT
1 AGC-ATGAATGTACATTT
26960227 CAGTAACATT
Statistics
Matches: 177, Mismatches: 39, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
40 175 0.99
41 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (40 bp):
AGCATGAATGTACATTTAGGGGTACCAAAGTACAAACAGG
Found at i:26962114 original size:43 final size:42
Alignment explanation
Indices: 26962035--26962116 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 42
26962025 ATGGACTCCC
**
26962035 TGTAATTTGTTTATATTTGTATTAGTCCAATGCCCATCANCTT
1 TGTAATTTGTTTATATTTGTATTAGTCCAACACCCATCA-CTT
* *
26962078 TGTAATTTGTTTCTATTTGTATTAGTCTAACACCCATCA
1 TGTAATTTGTTTATATTTGTATTAGTCCAACACCCATCA
26962117 TGCCATTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.46
Consensus pattern (42 bp):
TGTAATTTGTTTATATTTGTATTAGTCCAACACCCATCACTT
Found at i:26967413 original size:20 final size:20
Alignment explanation
Indices: 26967388--26967431 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
26967378 TTTAGCTCAG
*
26967388 TTCAACTCACATGAGTTTAA
1 TTCAACTCACATGAGCTTAA
*
26967408 TTCAACTCACATGGGCTTAA
1 TTCAACTCACATGAGCTTAA
26967428 TTCA
1 TTCA
26967432 GCTCGTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
TTCAACTCACATGAGCTTAA
Found at i:26968692 original size:18 final size:18
Alignment explanation
Indices: 26968669--26968711 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26968659 TACAATCGGG
*
26968669 CACATCAACGAGTC-GACT
1 CACATCAACGAGCCGGA-T
*
26968687 CACATCACCGAGCCGGAT
1 CACATCAACGAGCCGGAT
26968705 CACATCA
1 CACATCA
26968712 TTTGGCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.33, C:0.37, G:0.16, T:0.14
Consensus pattern (18 bp):
CACATCAACGAGCCGGAT
Found at i:26969872 original size:13 final size:14
Alignment explanation
Indices: 26969854--26969882 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26969844 ATCGAGAGAC
26969854 GAAAAAAAGAA-AT
1 GAAAAAAAGAAGAT
26969867 GAAAAAAAGAAGAT
1 GAAAAAAAGAAGAT
26969881 GA
1 GA
26969883 GTGTGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (14 bp):
GAAAAAAAGAAGAT
Found at i:26969913 original size:35 final size:35
Alignment explanation
Indices: 26969871--26969952 Score: 130
Period size: 35 Copynumber: 2.3 Consensus size: 35
26969861 AGAAATGAAA
* *
26969871 AAAAGAAGATGAGTGTGAGAACGAAAAGAAAATTG
1 AAAAGAAGACGAGTGTGAGAACAAAAAGAAAATTG
26969906 AAAAGAAGACGAGTGTGAGAACAAAAAGAAAATTG
1 AAAAGAAGACGAGTGTGAGAACAAAAAGAAAATTG
26969941 AAAAAGAA-ACGA
1 -AAAAGAAGACGA
26969953 AAGAAGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
35 37 0.84
36 7 0.16
ACGTcount: A:0.59, C:0.05, G:0.26, T:0.11
Consensus pattern (35 bp):
AAAAGAAGACGAGTGTGAGAACAAAAAGAAAATTG
Found at i:26973615 original size:21 final size:19
Alignment explanation
Indices: 26973589--26973631 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
26973579 AAAAGTCGAA
*
26973589 ACTAAAAACGAGAAGAAAAGT
1 ACTAAAAA-GA-AACAAAAGT
*
26973610 ACTAAATAGAAACAAAAGT
1 ACTAAAAAGAAACAAAAGT
26973629 ACT
1 ACT
26973632 GTTATTGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 2 0.10
21 7 0.35
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14
Consensus pattern (19 bp):
ACTAAAAAGAAACAAAAGT
Found at i:26975954 original size:23 final size:23
Alignment explanation
Indices: 26975909--26975954 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
26975899 CCTCGTGGTG
* *
26975909 TATTTTGTGATGCCTTTGTGGCA
1 TATTTTGTGATGCCATTGAGGCA
26975932 TATTTTGTGATGCCATTGAGGCA
1 TATTTTGTGATGCCATTGAGGCA
26975955 AAATCAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.26, T:0.43
Consensus pattern (23 bp):
TATTTTGTGATGCCATTGAGGCA
Found at i:26979256 original size:27 final size:26
Alignment explanation
Indices: 26979172--26979255 Score: 125
Period size: 26 Copynumber: 3.2 Consensus size: 26
26979162 CTCTATTTAG
* *
26979172 AATACTTTGGTTTAAAAAATTACTGA
1 AATACTTTGGTTTACAAAATTACTAA
26979198 AATACTCTTGGTTTACAAAA-TACTAA
1 AATACT-TTGGTTTACAAAATTACTAA
26979224 AATACCTTTGGTTTACAAAATTACTAA
1 AATA-CTTTGGTTTACAAAATTACTAA
26979251 AATAC
1 AATAC
26979256 CCTCGACTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 29 0.55
27 24 0.45
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (26 bp):
AATACTTTGGTTTACAAAATTACTAA
Found at i:26979270 original size:27 final size:27
Alignment explanation
Indices: 26979240--26979338 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
26979230 TTTGGTTTAC
* * *
26979240 AAAATTACTAAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GAATTGA
* * *
26979267 AAAATTACCGAAGTACCCCTGATTTGA
1 AAAATTACCAAAATACCCCTGAATTGA
* *
26979294 AAAATTACCAAAGTACCCCTGAATTGC
1 AAAATTACCAAAATACCCCTGAATTGA
*
26979321 AAAATTATCAAAATACCC
1 AAAATTACCAAAATACCC
26979339 TCAGTTTGGA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
27 57 0.93
28 4 0.07
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.25
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGAATTGA
Found at i:26979868 original size:27 final size:27
Alignment explanation
Indices: 26979830--26979885 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
26979820 TACTGATGTG
* *
26979830 GTATTGGGCTAAGGCCCACCTTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
26979857 GTATTGGGCTAAAGCCCACATTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
26979884 GT
1 GT
26979886 TCTGTTACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (27 bp):
GTATTGGGCTAAAGCCCACATTGTTCT
Found at i:26980462 original size:19 final size:18
Alignment explanation
Indices: 26980435--26980473 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26980425 AACAACAAGG
*
26980435 TTTTGAAGGTAATAACTTT
1 TTTTAAAGG-AATAACTTT
*
26980454 TTTTAAAGGACTAACTTT
1 TTTTAAAGGAATAACTTT
26980472 TT
1 TT
26980474 AATTCACGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.49
Consensus pattern (18 bp):
TTTTAAAGGAATAACTTT
Found at i:26982561 original size:27 final size:27
Alignment explanation
Indices: 26982523--26982683 Score: 157
Period size: 27 Copynumber: 6.0 Consensus size: 27
26982513 ATTACTTTGG
**
26982523 TTTACAAAATTACTGAAATACCCTTGA
1 TTTACAAAATTACTGAAATACCCTCAA
26982550 TTTACAAAATTACTGAAATACCCTCAA
1 TTTACAAAATTACTGAAATACCCTCAA
* ** * *
26982577 CTTGTAAAATTAC-CAAAGTACCCTCGA
1 TTTACAAAATTACTGAAA-TACCCTCAA
* *
26982604 TTTGCAAAATTA-TCAAAATACCCTCAA
1 TTTACAAAATTACT-GAAATACCCTCAA
* *
26982631 TTTACAAAATTAC-CAAAGTACCCTTAA
1 TTTACAAAATTACTGAAA-TACCCTCAA
* *
26982658 ATTACAAAATTATTGAAATACCCTCA
1 TTTACAAAATTACTGAAATACCCTCA
26982684 GTTTGGAGAA
Statistics
Matches: 110, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
26 6 0.05
27 98 0.89
28 6 0.05
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTCAA
Found at i:26982680 original size:81 final size:81
Alignment explanation
Indices: 26982538--26982704 Score: 178
Period size: 81 Copynumber: 2.1 Consensus size: 81
26982528 AAAATTACTG
** * * **
26982538 AAATACCCTTGATTTACAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTC-
1 AAATACCCTCAATTTACAAAATTACTCAAATACCCTCAAATTACAAAATTACCAAAGTACCCTCA
26982602 GATTTGCAAAATTATCA
66 G-TTTGCAAAATTATCA
* **
26982619 AAATACCCTCAATTTACAAAATTAC-CAAAGTACCCTTAAATTACAAAATTATTGAAA-TACCCT
1 AAATACCCTCAATTTACAAAATTACTCAAA-TACCCTCAAATTACAAAATTA-CCAAAGTACCCT
* * *
26982682 CAGTTTGGAGAATTATCG
64 CAGTTTGCAAAATTATCA
26982700 AAATA
1 AAATA
26982705 ACCTTACAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
80 3 0.04
81 64 0.90
82 4 0.06
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATACCCTCAATTTACAAAATTACTCAAATACCCTCAAATTACAAAATTACCAAAGTACCCTCA
GTTTGCAAAATTATCA
Found at i:26982696 original size:54 final size:54
Alignment explanation
Indices: 26982527--26982688 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 54
26982517 CTTTGGTTTA
* * *
26982527 CAAAATTACTGAAA-TACCCTTGATTTACAAAATTACTGAAATACCCTCAACTTG
1 CAAAATTAC-CAAAGTACCCTTGATTTACAAAATTATTGAAATACCCTCAATTTG
* * * ** *
26982581 TAAAATTACCAAAGTACCCTCGATTTGCAAAATTATCAAAATACCCTCAATTTA
1 CAAAATTACCAAAGTACCCTTGATTTACAAAATTATTGAAATACCCTCAATTTG
* * *
26982635 CAAAATTACCAAAGTACCCTTAAATTACAAAATTATTGAAATACCCTCAGTTTG
1 CAAAATTACCAAAGTACCCTTGATTTACAAAATTATTGAAATACCCTCAATTTG
26982689 GAGAATTATC
Statistics
Matches: 89, Mismatches: 18, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
53 3 0.03
54 86 0.97
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
CAAAATTACCAAAGTACCCTTGATTTACAAAATTATTGAAATACCCTCAATTTG
Found at i:26993351 original size:20 final size:20
Alignment explanation
Indices: 26993328--26993410 Score: 87
Period size: 20 Copynumber: 4.2 Consensus size: 20
26993318 CACTTATGTG
26993328 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
*
26993348 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
** * *
26993368 CCCCTAATTGCACTTAC-GTG
1 CCCCTGTTTGTACTT-CGGTA
* *
26993388 CCCATGTTTGTACCTCGGTA
1 CCCCTGTTTGTACTTCGGTA
26993408 CCC
1 CCC
26993411 TTGAATGCAC
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:27007422 original size:51 final size:51
Alignment explanation
Indices: 27007346--27007478 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 51
27007336 TATGAACACG
* *
27007346 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GAT-ACATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGACAT--TGGTCACA
* * * * *
27007397 TGTGTAGTACTATGTGCAGGCTACTATGTTTACCAGATGGCCTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGACATTGGTCACA
*
27007448 TGTGTAGTACTATGTGTAGGCTACTACGTGT
1 TGTGTAGTACTATGTGCAGGCTACTACGTGT
27007479 GTAGTACTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
51 65 0.93
52 3 0.04
53 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGACATTGGTCACA
Found at i:27007465 original size:12 final size:12
Alignment explanation
Indices: 27007448--27007495 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
27007438 CTTGGTCACG
27007448 TGTGTAGTACTA
1 TGTGTAGTACTA
27007460 TGTGTAGGCTACTA
1 TGTGTA-G-TACTA
27007474 CGTGTGTAGTACTA
1 --TGTGTAGTACTA
*
27007488 TGAGTAGT
1 TGTGTAGT
27007496 TGCAAACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 13 0.42
13 1 0.03
14 10 0.32
15 1 0.03
16 6 0.19
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (12 bp):
TGTGTAGTACTA
Found at i:27007486 original size:14 final size:14
Alignment explanation
Indices: 27007445--27007487 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
27007435 GGCCTTGGTC
27007445 ACGTGTGTAGTACT
1 ACGTGTGTAGTACT
27007459 A--TGTGTAGGCTACT
1 ACGTGTGTA-G-TACT
27007473 ACGTGTGTAGTACT
1 ACGTGTGTAGTACT
27007487 A
1 A
27007488 TGAGTAGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 6 0.24
13 1 0.04
14 11 0.44
15 1 0.04
16 6 0.24
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (14 bp):
ACGTGTGTAGTACT
Found at i:27014994 original size:51 final size:51
Alignment explanation
Indices: 27014918--27015139 Score: 166
Period size: 51 Copynumber: 4.4 Consensus size: 51
27014908 TATGAACACG
* * *
27014918 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATC-GATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAAGCTACTACGTGAACCAGATAGAT-ATGGTCACA
* * * * * *
27014969 TGTGTAGAACTATGTGCAAGCTACTATGTGTACCAGATGGCCTA-GGTCACG
1 TGTGTAGTACTATGTGCAAGCTACTACGTGAACCAGATAG-ATATGGTCACA
* * * * * * *
27015020 TGTGTAGTACTATGTACAGGCTACTACATGAACC-GAAAAGCT-TGATCACG
1 TGTGTAGTACTATGTGCAAGCTACTACGTGAACCAG-ATAGATATGGTCACA
* * * * *
27015070 TGTGTAGTACTATGTGTAGGCTACTACGTGAATCGGAT-GACAATGGTCACA
1 TGTGTAGTACTATGTGCAAGCTACTACGTGAACCAGATAGA-TATGGTCACA
* *
27015121 TGGGTGGTACTATGTGCAA
1 TGTGTAGTACTATGTGCAA
27015140 ACCACCGAAT
Statistics
Matches: 135, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
49 1 0.01
50 40 0.30
51 88 0.65
52 5 0.04
53 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAAGCTACTACGTGAACCAGATAGATATGGTCACA
Found at i:27017357 original size:13 final size:12
Alignment explanation
Indices: 27017338--27017363 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
27017328 CAGTTTTACC
27017338 CAAAAAAAAATT
1 CAAAAAAAAATT
27017350 CAAAAAAAAATT
1 CAAAAAAAAATT
27017362 CA
1 CA
27017364 TTTGAGTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (12 bp):
CAAAAAAAAATT
Found at i:27019461 original size:18 final size:18
Alignment explanation
Indices: 27019438--27019473 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27019428 AAGTTACGAG
27019438 ATAGTCCTTGGTCACTTT
1 ATAGTCCTTGGTCACTTT
27019456 ATAGTCCTTGGTCACTTT
1 ATAGTCCTTGGTCACTTT
27019474 TAAGCTCGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (18 bp):
ATAGTCCTTGGTCACTTT
Found at i:27025461 original size:851 final size:851
Alignment explanation
Indices: 27023790--27025883 Score: 3969
Period size: 851 Copynumber: 2.5 Consensus size: 851
27023780 ACCCTCTATC
* *
27023790 ATATATGCTTATGCC-TTTCTCTTTTCCCTT-TTTTATAGTGTTACCAAGCCAGCTCGAAAATCG
1 ATATATGCTTAT-CCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCG
* * * * *
27023853 GAGGTTTTTAGATATCCAGTCACACTATCAACTTCCTTTTGGGTATTTTAGTCAAAAAATATTAT
65 GAGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTAT
27023918 TTTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATA
130 TTTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATA
27023983 TACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATG
195 TACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATG
27024048 TATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAA
260 TATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAA
27024113 AAGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCG
325 AAGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCG
27024178 GTCCGAGTATCTGACTTTGGAAAATCACTAAAAATTGTAAAAAAATAATTATGGTTTGTAATTTA
390 GTCCGAGTATCTGACTTTGGAAAATCACTAAAAATTGTAAAAAAATAATTATGGTTTGTAATTTA
27024243 TATGCTTAAATTTCTCAATGAGTGTATTCTCAAGAGAAACAAACAAGAACATCATTTGAATTCTG
455 TATGCTTAAATTTCTCAATGAGTGTATTCTCAAGAGAAACAAACAAGAACATCATTTGAATTCTG
27024308 TACAAAAAGATAATCAATTTTTAGTTAAGAGGGGAAGAGCTTTCAAGCAGTGAAATAGGGGAAAC
520 TACAAAAAGATAATCAATTTTTAGTTAAGAGGGGAAGAGCTTTCAAGCAGTGAAATAGGGGAAAC
27024373 TTTAAAGAATAAAATATACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATA
585 TTTAAAGAATAAAATATACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATA
27024438 TTTGAGTCTAGTTTCAAGGAAAATTGACCGATCTCAATTTGGAGTTCCGTAACTCTAGATAAAAA
650 TTTGAGTCTAGTTTCAAGGAAAATTGACCGATCTCAATTTGGAGTTCCGTAACTCTAGATAAAAA
27024503 TAATTTAGTGACTATGACGCGAATAAACAGCTTGCTGGAACTTTAATAAAGAATGAATTTATGTG
715 TAATTTAGTGACTATGACGCGAATAAACAGCTTGCTGGAACTTTAATAAAGAATGAATTTATGTG
27024568 TGATTATGATTATATTATCTATGGAAATATGCTAGAAACTTGTTTATTAATTACATATTTACTTA
780 TGATTATGATTATATTATCTATGGAAATATGCTAGAAACTTGTTTATTAATTACATATTTACTTA
27024633 CTAAGCT
845 CTAAGCT
27024640 ATATATGCTTATCCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCGG
1 ATATATGCTTATCCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCGG
27024705 AGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTATT
66 AGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTATT
27024770 TTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATAT
131 TTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATAT
27024835 ACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATGT
196 ACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATGT
27024900 ATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAAA
261 ATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAAA
27024965 AGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCGG
326 AGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCGG
27025030 TCCGAGTATCTGACTTTGGAAAATCACTAAAAATTGTAAAAAAATAATTATGGTTTGTAATTTAT
391 TCCGAGTATCTGACTTTGGAAAATCACTAAAAATTGTAAAAAAATAATTATGGTTTGTAATTTAT
27025095 ATGCTTAAATTTCTCAATGAGTGTATTCTCAAGAGAAACAAACAAGAACATCATTTGAATTCTGT
456 ATGCTTAAATTTCTCAATGAGTGTATTCTCAAGAGAAACAAACAAGAACATCATTTGAATTCTGT
27025160 ACAAAAAGATAATCAATTTTTAGTTAAGAGGGGAAGAGCTTTCAAGCAGTGAAATAGGGGAAACT
521 ACAAAAAGATAATCAATTTTTAGTTAAGAGGGGAAGAGCTTTCAAGCAGTGAAATAGGGGAAACT
27025225 TTAAAGAATAAAATATACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATAT
586 TTAAAGAATAAAATATACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATAT
27025290 TTGAGTCTAGTTTCAAGGAAAATTGACCGATCTCAATTTGGAGTTCCGTAACTCTAGATAAAAAT
651 TTGAGTCTAGTTTCAAGGAAAATTGACCGATCTCAATTTGGAGTTCCGTAACTCTAGATAAAAAT
27025355 AATTTAGTGACTATGACGCGAATAAACAGCTTGCTGGAACTTTAATAAAGAATGAATTTATGTGT
716 AATTTAGTGACTATGACGCGAATAAACAGCTTGCTGGAACTTTAATAAAGAATGAATTTATGTGT
27025420 GATTATGATTATATTATCTATGGAAATATGCTAGAAACTTGTTTATTAATTACATATTTACTTAC
781 GATTATGATTATATTATCTATGGAAATATGCTAGAAACTTGTTTATTAATTACATATTTACTTAC
27025485 TAAGCT
846 TAAGCT
27025491 ATATATGCTTATCCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCGG
1 ATATATGCTTATCCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCGG
27025556 AGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTATT
66 AGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTATT
* * * * *
27025621 TTGGAATTATGGCATGTATAGAAGACTTGGTCATTTTTTTATGTGTCATAAATTGTTTTGTATGT
131 TTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATAT
* *
27025686 ACTATATAATAGTTTATTTTGTATAAGTCATTGATATGGACTAATATGGATTAAATTCCACGTGT
196 ACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATGT
* *
27025751 ATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTATGTAAATGTTTAAATGCAAA-AAA
261 ATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAAA
* * * * *
27025815 AGGGACTTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTGTAATGCCTTGTACTTGG
326 AGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCGG
27025880 TCCG
391 TCCG
27025884 GGCGTTTGAC
Statistics
Matches: 1221, Mismatches: 21, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
849 2 0.00
850 94 0.08
851 1125 0.92
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (851 bp):
ATATATGCTTATCCTTTTCTCTTTTCCCTTGTTTTATAGTGTTGCCAAGCCAGCTCAAAAATCGG
AGGTTTTCAGAGATCCAGTCACATTATCAACTTCCTTTTGGTTATTTTAGTCGAAAAATATTATT
TTGGAATTATGGCATGTATAGTAGACTTGGTAATTTTGTTATGTGTCATAAATTGTTCTGTATAT
ACTATATAATAGTTTATTTTGTATAAGTCATCGATATGGACTAATATGGATTAAATTCCACATGT
ATGAAATTTCAATGTTGTGTTGATAAATTTTAAAGCAAGTACGTAAATGTTTAAATGTAAAGAAA
AGGGACGTTAAAATAAAATATGAAAAAAAATATTTTGTTAAAGTTCTATATTGCCTCGTACTCGG
TCCGAGTATCTGACTTTGGAAAATCACTAAAAATTGTAAAAAAATAATTATGGTTTGTAATTTAT
ATGCTTAAATTTCTCAATGAGTGTATTCTCAAGAGAAACAAACAAGAACATCATTTGAATTCTGT
ACAAAAAGATAATCAATTTTTAGTTAAGAGGGGAAGAGCTTTCAAGCAGTGAAATAGGGGAAACT
TTAAAGAATAAAATATACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAAGAATATAT
TTGAGTCTAGTTTCAAGGAAAATTGACCGATCTCAATTTGGAGTTCCGTAACTCTAGATAAAAAT
AATTTAGTGACTATGACGCGAATAAACAGCTTGCTGGAACTTTAATAAAGAATGAATTTATGTGT
GATTATGATTATATTATCTATGGAAATATGCTAGAAACTTGTTTATTAATTACATATTTACTTAC
TAAGCT
Found at i:27026284 original size:26 final size:26
Alignment explanation
Indices: 27026254--27026307 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
27026244 TTATGATAAC
27026254 ATTGATTAATTAAATGATGTGTTTAT
1 ATTGATTAATTAAATGATGTGTTTAT
27026280 ATTGATTAATTAAATGATGTGTTTAT
1 ATTGATTAATTAAATGATGTGTTTAT
27026306 AT
1 AT
27026308 ATAGTAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (26 bp):
ATTGATTAATTAAATGATGTGTTTAT
Found at i:27035650 original size:14 final size:14
Alignment explanation
Indices: 27035631--27035658 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27035621 AATCAACTAC
27035631 ACATTAGTCTCAAT
1 ACATTAGTCTCAAT
27035645 ACATTAGTCTCAAT
1 ACATTAGTCTCAAT
27035659 GTATTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
ACATTAGTCTCAAT
Found at i:27036921 original size:20 final size:20
Alignment explanation
Indices: 27036893--27036933 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27036883 ATAATGCTAT
* *
27036893 ACAATGGCACCGTAGTGCAA
1 ACAAAGGCACCGAAGTGCAA
*
27036913 ACAAAGGCACTGAAGTGCAA
1 ACAAAGGCACCGAAGTGCAA
27036933 A
1 A
27036934 AAGACTCATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.12
Consensus pattern (20 bp):
ACAAAGGCACCGAAGTGCAA
Found at i:27037105 original size:5 final size:5
Alignment explanation
Indices: 27037082--27037158 Score: 127
Period size: 5 Copynumber: 15.0 Consensus size: 5
27037072 AACCAAAACA
27037082 ATATC ATTATC ATTATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC A-TATC A-TATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
*
27037134 ATATC ATATC ATACC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC
27037159 CATTCAACAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
5 58 0.84
6 11 0.16
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATC
Found at i:27041588 original size:79 final size:81
Alignment explanation
Indices: 27041452--27041636 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
27041442 TTGAATGATG
*
27041452 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
27041516 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
27041531 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
27041593 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
27041611 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27041637 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:27041643 original size:40 final size:39
Alignment explanation
Indices: 27041453--27041636 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
27041443 TGAATGATGT
* * *
27041453 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
27041492 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
27041533 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
27041571 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
27041612 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
27041637 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27041658 original size:79 final size:79
Alignment explanation
Indices: 27041453--27041669 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
27041443 TGAATGATGT
** * * * ** *
27041453 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
27041516 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** *
27041533 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
27041598 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
27041612 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
27041670 TACGTGATTT
Statistics
Matches: 117, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 72 0.62
80 42 0.36
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:27044035 original size:32 final size:32
Alignment explanation
Indices: 27043997--27044115 Score: 132
Period size: 32 Copynumber: 3.7 Consensus size: 32
27043987 TACAATAATG
* *
27043997 TGATTGGAACAAAGCCATCAGTTGCAGTGATA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATA
* * * * *
27044029 TGATTGGCACATAGCCATCAGTAACGGTAACA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATA
* *
27044061 TGACTGGCACAAAGCAATCAGTAGCAGTGATA
1 TGATTGGCACAAAGCCATCAGTAGCAGTGATA
*
27044093 TGATCGGCACACAA-CCATCAGTA
1 TGATTGGCACA-AAGCCATCAGTA
27044116 ACAATGAAAT
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
32 67 0.97
33 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (32 bp):
TGATTGGCACAAAGCCATCAGTAGCAGTGATA
Found at i:27045529 original size:27 final size:27
Alignment explanation
Indices: 27045499--27045676 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
27045489 ATATTGAGCC
* *
27045499 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
27045526 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27045553 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
27045581 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27045608 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
27045635 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
27045662 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27045677 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27045611 original size:55 final size:54
Alignment explanation
Indices: 27045499--27045676 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
27045489 ATATTGAGCC
* * * * *
27045499 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
27045553 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
27045608 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
27045662 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27045677 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:27053535 original size:27 final size:27
Alignment explanation
Indices: 27053505--27053682 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
27053495 ATATTGAGCC
* *
27053505 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
27053532 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27053559 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
27053587 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27053614 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
27053641 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
27053668 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27053683 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27053617 original size:55 final size:54
Alignment explanation
Indices: 27053505--27053682 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
27053495 ATATTGAGCC
* * * * *
27053505 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
27053559 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
27053614 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
27053668 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27053683 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:27061606 original size:27 final size:27
Alignment explanation
Indices: 27061576--27061753 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
27061566 ATATTGAGCC
* *
27061576 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
27061603 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27061630 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
27061658 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27061685 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
27061712 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
27061739 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27061754 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27061688 original size:55 final size:54
Alignment explanation
Indices: 27061576--27061753 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
27061566 ATATTGAGCC
* * * * *
27061576 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
27061630 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
27061685 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
27061739 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27061754 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:27069612 original size:27 final size:27
Alignment explanation
Indices: 27069582--27069759 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
27069572 ATATTGAGCC
* *
27069582 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
27069609 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
27069636 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
27069664 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
27069691 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
27069718 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
27069745 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27069760 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:27069694 original size:55 final size:54
Alignment explanation
Indices: 27069582--27069759 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
27069572 ATATTGAGCC
* * * * *
27069582 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
27069636 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
27069691 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
27069745 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27069760 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:27072654 original size:8 final size:8
Alignment explanation
Indices: 27072612--27072636 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
27072602 ATATAGACTA
27072612 AATAAAAT
1 AATAAAAT
27072620 AATAAAAT
1 AATAAAAT
27072628 AATAAAAT
1 AATAAAAT
27072636 A
1 A
27072637 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:27075689 original size:42 final size:42
Alignment explanation
Indices: 27075639--27075732 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
27075629 CCCAACTATA
*
27075639 GTCTTACACAAAGTCTCATATCGATGCCATAT-CCAGAATATG
1 GTCTTACACAAAGTCTCATATAGATGCCATATCCCAG-ATATG
* * *
27075681 GTCTTACACGAAGTCTTATATAGATGTCATATCCCAGATATG
1 GTCTTACACAAAGTCTCATATAGATGCCATATCCCAGATATG
*
27075723 GCCTTACACA
1 GTCTTACACA
27075733 TAGCCTTAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
GTCTTACACAAAGTCTCATATAGATGCCATATCCCAGATATG
Found at i:27090643 original size:24 final size:24
Alignment explanation
Indices: 27090611--27090681 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
27090601 CTGTCAGGAG
27090611 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
27090635 AGGATTTAGGAGTTGATAAGAGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
27090659 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
27090682 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:27092133 original size:28 final size:29
Alignment explanation
Indices: 27092092--27092163 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
27092082 AGGAAGTGTC
*
27092092 CTGGTGGCTATGCCACAAAT-TATCTGAT
1 CTGGTGGCTCTGCCACAAATATATCTGAT
* * *
27092120 CTGGTGGCTCTGCCAGATATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATATCTGAT
* *
27092149 CTGGTTGATCTGCCA
1 CTGGTGGCTCTGCCA
27092164 TGATTATATG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 17 0.46
29 20 0.54
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (29 bp):
CTGGTGGCTCTGCCACAAATATATCTGAT
Found at i:27092160 original size:29 final size:29
Alignment explanation
Indices: 27092112--27092172 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
27092102 TGCCACAAAT
*
27092112 TATCTGATCTGGTGGCTCTGCCA-GATATA
1 TATCTGATCTGGTGGATCTGCCATGAT-TA
* *
27092141 TATCTGTTCTGGTTGATCTGCCATGATTA
1 TATCTGATCTGGTGGATCTGCCATGATTA
27092170 TAT
1 TAT
27092173 GTATTTGGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (29 bp):
TATCTGATCTGGTGGATCTGCCATGATTA
Found at i:27097947 original size:24 final size:24
Alignment explanation
Indices: 27097920--27097966 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
27097910 TTGTCAGGAG
**
27097920 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
27097944 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
27097967 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:27098924 original size:8 final size:8
Alignment explanation
Indices: 27098911--27098950 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
27098901 CTAGATCGGC
27098911 AAAAGCCG
1 AAAAGCCG
27098919 AAAAGCC-
1 AAAAGCCG
27098926 AAAATGCCG
1 AAAA-GCCG
*
27098935 AAATGCCG
1 AAAAGCCG
27098943 AAAAGCCG
1 AAAAGCCG
27098951 GTATTTTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 4 0.14
8 21 0.75
9 3 0.11
ACGTcount: A:0.47, C:0.25, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:27099267 original size:57 final size:54
Alignment explanation
Indices: 27099179--27099293 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 54
27099169 AGGAAGCGTC
*
27099179 CTGGTGGCTATGCCACAAATTATCTAATCTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTAATCTGGTGACTCTGCCAC--AT-TATCTGTT
* * * *
27099236 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCT-AATCTGGTGACTCTGCCACATTATCTGTT
27099290 CTGG
1 CTGG
27099294 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 12 0.23
55 2 0.04
56 7 0.13
57 31 0.60
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
Found at i:27099283 original size:27 final size:27
Alignment explanation
Indices: 27099179--27099293 Score: 133
Period size: 28 Copynumber: 4.1 Consensus size: 27
27099169 AGGAAGCGTC
* **
27099179 CTGGTGGCTATGCCACAAATTATCTAAT
1 CTGGTGGCTCTGCCAC-AATTATCTGTT
27099207 CTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACA-AT-TATCTGTT
*
27099236 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGT-T
* *
27099264 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
27099290 CTGG
1 CTGG
27099294 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
26 5 0.06
27 17 0.22
28 34 0.44
29 22 0.28
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:27108096 original size:32 final size:32
Alignment explanation
Indices: 27108023--27108096 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
27108013 ATTACCCTAG
*
27108023 CTGATGGCTATGTGCCAAACATAATACAATTA
1 CTGATGGCTTTGTGCCAAACATAATACAATTA
* ** **
27108055 CCGATGGCTTTGTGCCAATTATAATACCGTTA
1 CTGATGGCTTTGTGCCAAACATAATACAATTA
*
27108087 CTGAAGGCTT
1 CTGATGGCTT
27108097 AGAGTCGCAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (32 bp):
CTGATGGCTTTGTGCCAAACATAATACAATTA
Found at i:27108391 original size:27 final size:27
Alignment explanation
Indices: 27108332--27108391 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
27108322 GTTTGGGATA
* *
27108332 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATTCTGTAATGGGCTGT
* *
27108359 GACCCAAATGATTTTGTAATGGGCAT-T
1 GGCCCAAATGATTCTGTAATGGGC-TGT
27108386 GGCCCA
1 GGCCCA
27108392 CGTATGCTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (27 bp):
GGCCCAAATGATTCTGTAATGGGCTGT
Found at i:27118277 original size:11 final size:11
Alignment explanation
Indices: 27118250--27118278 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
27118240 TAGAAATGGT
27118250 ATGTTTAAATG
1 ATGTTTAAATG
27118261 -TGTTTAAATG
1 ATGTTTAAATG
27118271 ATGTTTAA
1 ATGTTTAA
27118279 TTCTTTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (11 bp):
ATGTTTAAATG
Found at i:27120401 original size:166 final size:165
Alignment explanation
Indices: 27120123--27120451 Score: 507
Period size: 166 Copynumber: 2.0 Consensus size: 165
27120113 AGTTTCGTTA
* * **
27120123 TTTCTTTCGATTATATTGTATATTGGATGTTTTTTATTTTTAAGCATGAACTAATTTTTTAAATA
1 TTTCATTCGATTATATTGTATATTGGATGTTTTTTATTTTTAAGCATAAACTAATTTTCCAAATA
*
27120188 CCTAGGGAGATGAACCCTATGATGAATTCTGTCGTTTGATTTTTATTTTACCCAATAAATACTTA
66 CCTAGGGAGATGAACCCTATAATGAATTCTGTCGTTTGATTTTTATTTTACCCAATAAATACTTA
*
27120253 GATCTTCTTCTCAATTATGTGTGCTTAATTCTTTT
131 GATCTTCTTCTCAATTATATGTGCTTAATTCTTTT
* *
27120288 TTTCATTCGATTATACTT-TATATTGTATGTTTTTATTTTTTTAAGCATAAACTAATTTTCCAAA
1 TTTCATTCGATTATA-TTGTATATTGGATGTTTTT-TATTTTTAAGCATAAACTAATTTTCCAAA
* * * *
27120352 TACCTAGGGAGATGAACCCTATAATGAATTTTTTTGTTTGATTTTTATTTTACCTAATAAATACT
64 TACCTAGGGAGATGAACCCTATAATGAATTCTGTCGTTTGATTTTTATTTTACCCAATAAATACT
* *
27120417 TAGATTTTGTTCTCAATTATATGTGCTTAATTCTT
129 TAGATCTTCTTCTCAATTATATGTGCTTAATTCTT
27120452 GGTTTGATAT
Statistics
Matches: 148, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
165 29 0.20
166 119 0.80
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (165 bp):
TTTCATTCGATTATATTGTATATTGGATGTTTTTTATTTTTAAGCATAAACTAATTTTCCAAATA
CCTAGGGAGATGAACCCTATAATGAATTCTGTCGTTTGATTTTTATTTTACCCAATAAATACTTA
GATCTTCTTCTCAATTATATGTGCTTAATTCTTTT
Found at i:27136981 original size:43 final size:43
Alignment explanation
Indices: 27136933--27137051 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 43
27136923 ATCACATGTA
* *
27136933 TCGCATCCATTATGAACTCGGACCACTCAACAAGCTCGGATGC
1 TCGCATCTATAATGAACTCGGACCACTCAACAAGCTCGGATGC
* * * * **
27136976 TCGCATCTATAATGAAATCAGACCATTTAATGAGCTCGGATGC
1 TCGCATCTATAATGAACTCGGACCACTCAACAAGCTCGGATGC
* * * * *
27137019 -CACATATATCACGAACTCGGACGACTCAACAAG
1 TCGCATCTATAATGAACTCGGACCACTCAACAAG
27137052 TGATACGGGG
Statistics
Matches: 57, Mismatches: 19, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
TCGCATCTATAATGAACTCGGACCACTCAACAAGCTCGGATGC
Found at i:27137887 original size:22 final size:23
Alignment explanation
Indices: 27137862--27137921 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
27137852 TGGACTGAAT
27137862 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
27137884 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
27137906 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
27137922 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:27137889 original size:4 final size:4
Alignment explanation
Indices: 27137871--27137904 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
27137861 TATAAAAATT
27137871 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
27137905 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:27139310 original size:23 final size:22
Alignment explanation
Indices: 27139258--27139310 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
27139248 TCCACGTCTT
*
27139258 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
27139280 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
27139303 TTTCTTTT
1 TTTCTTTT
27139311 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:27141683 original size:22 final size:23
Alignment explanation
Indices: 27141658--27141717 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
27141648 TGGACTGAAT
27141658 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
27141680 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
27141702 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
27141718 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:27141685 original size:4 final size:4
Alignment explanation
Indices: 27141667--27141700 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
27141657 TATAAAAATT
27141667 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
27141701 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:27143106 original size:23 final size:22
Alignment explanation
Indices: 27143054--27143106 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
27143044 TCCACGTCTT
*
27143054 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
27143076 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
27143099 TTTCTTTT
1 TTTCTTTT
27143107 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:27145479 original size:4 final size:4
Alignment explanation
Indices: 27145470--27145497 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
27145460 TTAAACTAAG
27145470 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
27145498 AATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:27147083 original size:20 final size:20
Alignment explanation
Indices: 27147058--27147096 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27147048 TGTATTCTTA
* *
27147058 AAATTTTAGAATTTTTCATC
1 AAATTTTACAACTTTTCATC
27147078 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
27147097 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:27147847 original size:17 final size:17
Alignment explanation
Indices: 27147825--27147860 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
27147815 ATTAGGGCAA
27147825 GTATGAAAAAATAAAAG
1 GTATGAAAAAATAAAAG
27147842 GTATGAAAAAATAAAAG
1 GTATGAAAAAATAAAAG
27147859 GT
1 GT
27147861 TTCTATTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.19, T:0.19
Consensus pattern (17 bp):
GTATGAAAAAATAAAAG
Found at i:27150295 original size:26 final size:26
Alignment explanation
Indices: 27150266--27150373 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
27150256 TGGTACAAAT
27150266 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
27150292 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27150318 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
27150344 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27150370 TGAT
1 TGAT
27150374 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27161780 original size:6 final size:7
Alignment explanation
Indices: 27161763--27161789 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
27161753 ATAAACATAT
27161763 TTTTTGG
1 TTTTTGG
27161770 TTTTTGG
1 TTTTTGG
27161777 TTTTTGG
1 TTTTTGG
27161784 TTTTTG
1 TTTTTG
27161790 ATTTATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74
Consensus pattern (7 bp):
TTTTTGG
Found at i:27162346 original size:176 final size:176
Alignment explanation
Indices: 27162029--27163077 Score: 1527
Period size: 176 Copynumber: 6.0 Consensus size: 176
27162019 AGATCTACAA
* * * * *
27162029 TCAGTCTGCTTCTTTGCTAACTCAGGAAGATAAGACTACAAT-TGCCAATCTGCTCTCTTGCTTC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCT-TCAACCTGCTCTCTTGCTAC
* * * * * * * *
27162093 CTCAAAAAGATAAGACTAGCGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGAGTCGCC
64 CTCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC
* * * *
27162158 -TCTTTTGATCTGCTCCACTATTGCTTT-GGGAGATAAAATCTTCAATTT
129 ATC-TTCGATCTGCTCCACTACTG-TTTAGGGAGATAAGATCTTCAATCT
* * * *
27162206 TCAGTCTACTTTCTTGCTACCTC-GGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTGTTATC
1 TCAGTCTGCTTCCTTGCTACCTCAGG-AAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACC
** * * *
27162270 TCAGAGAGATAAAACTTGGGGCTTAAATCTGCACCATTGCCGATACATGGAAATAAGATTCGCTA
65 TCAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCA
* *
27162335 TCTTCGATCTGCTTCTA-TACTATTT-GAGGAGATAAGATCTTCAATCT
130 TCTTCGATCTGC-TCCACTACTGTTTAG-GGAGATAAGATCTTCAATCT
27162382 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* *
27162447 CAGAGAGATAAGGCTTGGGGCTT-AATCTGCTCCATTGTCGATACATGGAGATAAGGTTCGCCAT
66 CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
* *
27162511 CTTCGATCTGCTCCACTATTGTTTAGGGAGACAAGATCTTCAATCT
131 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCT
27162557 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* *** *
27162622 CAGAGAGATAAGGCTTGGGGCTTAAATTTGCTCCATTTTTGATACATGGAGATAAGACTCGCCAT
66 CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
** *
27162687 CTTTAATCTGCTCCTCTACTGTTTAGGGAGATAAGATCTTCAATCT
131 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCT
*
27162733 TCAGTCTGGTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* * *
27162798 CAGAGAGATAAGGCTTGGGGCTTAAATCTACTTCATTGCCGATACATAGAGATAAGATTCGCCAT
66 CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
27162863 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCT
131 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCT
* * *
27162909 TCAGTCTGTTTTCTTGCTACCTCAGGAAGATAAGACTCAATCTTCTACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* * *
27162974 CAGAGAGATAAGGCTTGGGACTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTTGCCAT
66 CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
*
27163039 CTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCT
131 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCT
27163078 AACTTCATCA
Statistics
Matches: 790, Mismatches: 73, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
174 3 0.00
175 164 0.21
176 585 0.74
177 38 0.05
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (176 bp):
TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCT
Found at i:27162427 original size:43 final size:45
Alignment explanation
Indices: 27162363--27162985 Score: 133
Period size: 43 Copynumber: 14.2 Consensus size: 45
27162353 ACTATTTGAG
**
27162363 GAGATAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACCTCAG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGA
27162407 GAAGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
* **** * *
27162451 GAGATAAG-GCTTGGGGCTT-AATCTGCTC-CATTG-T-CGATACATG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCTC-TTGCTAC-CT-CA-GA
* * * * * * * *
27162494 GAGATAAGGT-TCGCCATCTTCGATCTGCTCCACTATTG-T---TTAGG
1 GAGATAAGATCT-TCAATCTTCAACCTGCT---CTCTTGCTACCTCAGA
* **
27162538 GAGACAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACCTCAG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGA
27162582 GAAGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
* **** * ** * * *
27162626 GAGATAAG-GCTTGGGGCTTAAATTTGCTCCATTTTTGATACAT--G-
1 GAGATAAGATCTTCAATCTTCAACCTGCT-C--TCTTGCTACCTCAGA
* * * * * * *
27162670 GAGATAAGA-CTCGCCATCTTTAATCTGCTC-C-T-CTACTGTTTAGG
1 GAGATAAGATCT-TCAATCTTCAACCTGCTCTCTTGCTAC--CTCAGA
** *
27162714 GAGATAAGATCTTCAATCTTCAGTCTGGT-TCCTTGCTACCTCAG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGA
27162758 GAAGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
* **** * * * * *
27162802 GAGATAAG-GCTTGGGGCTTAAATCTACT-TCATTGC--CGATACATA
1 GAGATAAGATCTTCAATCTTCAACCTGCTCTC-TTGCTAC-CT-CAGA
* * * * * * * *
27162846 GAGATAAGAT-TCGCCATCTTCGATCTGCTC-C--ACTACTGTTTAGG
1 GAGATAAGATCT-TCAATCTTCAACCTGCTCTCTTGCTAC--CTCAGA
** * *
27162890 GAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTACCTCAG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
*
27162934 GAAGATAAGA-C-TCAATCTTCTACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
27162978 GAGATAAG
1 GAGATAAG
27162986 GCTTGGGACT
Statistics
Matches: 421, Mismatches: 95, Indels: 127
0.65 0.15 0.20
Matches are distributed among these distances:
39 3 0.01
40 2 0.00
41 5 0.01
42 6 0.01
43 168 0.40
44 137 0.33
45 78 0.19
46 1 0.00
47 16 0.04
48 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (45 bp):
GAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
Found at i:27162762 original size:351 final size:351
Alignment explanation
Indices: 27162029--27163077 Score: 1552
Period size: 351 Copynumber: 3.0 Consensus size: 351
27162019 AGATCTACAA
* * * * *
27162029 TCAGTCTGCTTCTTTGCTAACTCAGGAAGATAAGACTACAAT-TGCCAATCTGCTCTCTTGCTTC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCT-TCAACCTGCTCTCTTGCTAC
* * * * * * *
27162093 CTCAAAAAGATAAGACTAGCGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGAG-TCGC
64 CTCAGAGAGATAAGGCTTGGGGCT-TAATCTGCTCCATTGCCGATACATGGAGATAAG-GTTCGC
* * * *
27162157 C-TCTTTTGATCTGCTCCACTATTGCTTT-GGGAGATAAAATCTTCAATTTTCAGTCTACTTTCT
127 CATC-TTCGATCTGCTCCACTATTG-TTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCT
* * **
27162220 TGCTACCTC-GGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTGTTATCTCAGAGAGATAAAA
190 TGCTACCTCAGG-AAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG
* * * * *
27162284 CTTGGGGCTTAAATCTGCACCATTGCCGATACATGGAAATAAGATTCGCTATCTTCGATCTGCTT
254 CTTGGGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTC
* *
27162349 CTATACTATTT-GAGGAGATAAGATCTTCAATCT
319 CTCTACTGTTTAG-GGAGATAAGATCTTCAATCT
27162382 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
*
27162447 CAGAGAGATAAGGCTTGGGGCTTAATCTGCTCCATTGTCGATACATGGAGATAAGGTTCGCCATC
66 CAGAGAGATAAGGCTTGGGGCTTAATCTGCTCCATTGCCGATACATGGAGATAAGGTTCGCCATC
* *
27162512 TTCGATCTGCTCCACTATTGTTTAGGGAGACAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTAC
131 TTCGATCTGCTCCACTATTGTTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTAC
27162577 CTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGGG
196 CTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGGG
*** * **
27162642 CTTAAATTTGCTCCATTTTTGATACATGGAGATAAGACTCGCCATCTTTAATCTGCTCCTCTACT
261 CTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCTCTACT
27162707 GTTTAGGGAGATAAGATCTTCAATCT
326 GTTTAGGGAGATAAGATCTTCAATCT
*
27162733 TCAGTCTGGTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* * * *
27162798 CAGAGAGATAAGGCTTGGGGCTTAAATCTACTTCATTGCCGATACATAGAGATAAGATTCGCCAT
66 CAGAGAGATAAGGCTTGGGGCTT-AATCTGCTCCATTGCCGATACATGGAGATAAGGTTCGCCAT
* *
27162863 CTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTTCAATCTTCAGTCTGTTTTCTTGCTA
130 CTTCGATCTGCTCCACTATTGTTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTA
*
27162928 CCTCAGGAAGATAAGACTCAATCTTCTACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGG
195 CCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGG
* * *
27162993 ACTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCGCTAC
260 GCTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCTCTAC
27163058 TGTTTAGGGAGATAAGATCT
325 TGTTTAGGGAGATAAGATCT
27163078 AACTTCATCA
Statistics
Matches: 633, Mismatches: 56, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
350 4 0.01
351 311 0.49
352 282 0.45
353 36 0.06
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (351 bp):
TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
CAGAGAGATAAGGCTTGGGGCTTAATCTGCTCCATTGCCGATACATGGAGATAAGGTTCGCCATC
TTCGATCTGCTCCACTATTGTTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTAC
CTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGGG
CTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCTCTACT
GTTTAGGGAGATAAGATCTTCAATCT
Done.