genome.fa.s522.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold3229.1
Parameters: 2 7 7 80 10 50 1000
Length:  150272

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5955--6139	40	4.7	40	83	6	225	24	27	22	24	2.00
5955--6139	79	2.3	82	83	7	229	24	27	22	24	2.00
13879--14063	79	2.3	82	84	7	229	24	27	22	24	2.00
13860--14063	40	5.1	40	81	8	229	24	27	22	25	2.00
15190--15421	56	4.1	56	99	0	455	22	22	9	45	1.80
21896--22119	79	2.8	79	83	6	283	25	27	22	24	2.00
21896--22119	40	5.7	40	85	6	287	25	27	22	24	2.00
23248--23367	56	2.1	56	98	0	231	22	23	9	45	1.81
37089--37287	40	5.0	40	89	1	292	23	27	22	27	1.99
38844--39490	47	13.6	47	90	3	999	30	28	8	32	1.86
38844--39490	96	6.8	96	95	1	1124	30	28	8	32	1.86
56828--56960	35	3.7	35	73	6	97	31	15	9	43	1.79
59857--60361	47	10.7	47	95	2	863	32	8	30	28	1.87
60480--60558	37	2.1	37	86	4	106	24	20	30	25	1.98
60693--60799	55	1.9	56	94	1	189	30	10	25	33	1.89
63277--63397	47	2.6	47	91	0	188	38	12	23	26	1.90
63376--63547	55	3.2	54	85	2	238	35	18	23	22	1.96
67598--67647	15	3.4	15	83	8	59	62	12	16	10	1.55
70690--70963	146	1.9	146	99	0	539	26	25	21	25	2.00
72486--72657	79	2.2	79	81	5	195	23	22	28	25	1.99
72433--72655	40	5.6	39	80	7	189	24	21	27	25	1.99
72513--72690	79	2.2	80	80	3	191	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76106--76291	27	6.9	27	89	2	275	29	25	7	37	1.83
76094--76291	81	2.4	80	92	1	315	28	25	7	37	1.83
76290--76449	27	5.9	27	76	10	139	38	21	10	30	1.87
76323--76473	54	2.8	54	77	3	160	41	21	7	29	1.80
76323--76449	27	4.7	27	81	3	157	39	22	7	29	1.83
76439--76531	27	3.4	27	78	11	98	43	17	6	33	1.74
76451--76536	27	3.1	27	82	11	111	39	13	9	37	1.78
76581--76632	27	1.9	27	84	7	70	38	23	21	17	1.93
77464--77546	25	3.4	24	83	8	87	26	21	24	27	1.99
77489--77560	25	3.0	23	84	10	81	27	22	23	26	1.99
77695--77730	18	2.0	18	100	0	72	38	22	5	33	1.77
77814--77896	31	2.7	31	90	1	132	28	15	25	30	1.96
78749--78788	21	1.9	21	100	0	80	32	5	17	45	1.70
83314--83409	47	2.0	47	97	0	183	25	10	21	42	1.84
93674--93847	46	3.8	45	78	7	197	29	29	19	21	1.98
93682--93853	93	1.8	93	92	0	290	29	29	19	21	1.98
95676--95715	21	1.9	21	100	0	80	45	17	5	32	1.70
96568--96650	31	2.7	31	90	1	132	30	25	15	28	1.96
96734--96769	18	2.0	18	100	0	72	33	5	22	38	1.77
96931--97000	25	2.8	26	86	4	90	28	24	24	22	1.99
97832--97883	27	1.9	28	84	7	72	17	21	23	38	1.93
97928--98013	27	3.1	27	82	11	111	37	9	13	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98015--98195	27	6.7	27	87	1	256	29	8	22	39	1.83
98015--98228	54	4.0	54	83	4	254	29	10	21	38	1.87
98015--98225	81	2.6	81	85	3	264	29	9	21	38	1.86
98227--98466	27	8.9	27	89	1	347	37	7	25	29	1.84
101915--102139	40	5.7	40	78	8	190	25	28	21	24	1.99
102071--102148	40	1.9	41	82	10	97	28	28	20	23	1.99
103753--103928	46	3.8	45	75	10	167	21	19	28	29	1.98
103749--103920	93	1.8	93	91	0	281	21	20	29	28	1.98
106872--106921	15	3.4	15	83	8	59	10	16	12	62	1.55
110722--110890	55	3.1	54	84	5	234	23	23	18	34	1.96
110872--110992	47	2.6	47	91	0	188	26	23	12	38	1.90
113655--113733	37	2.1	37	86	4	106	25	30	20	24	1.98
113852--114123	47	5.7	47	91	2	411	28	30	8	32	1.87
113852--114102	96	2.6	96	92	1	407	28	30	8	32	1.87
113852--114123	143	1.9	141	89	3	420	28	30	8	32	1.87
134490--135183	47	14.6	47	90	2	1021	32	8	28	29	1.86
134497--135183	96	7.2	96	92	2	1073	32	8	28	29	1.86
136740--136978	40	6.0	40	91	0	361	27	22	27	23	1.99

Tables:   1

The End!