Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold9388.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4446
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27


Found at i:4050 original size:37 final size:37

Alignment explanation


    Indices: 4000--4075  Score: 143
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       3990 CAGGCTCTTG

                              *                  
       4000 GGGTGGATTATTCAAATTTGGGAATTGTTGGACAGCC
          1 GGGTGGATTATTCAAATTCGGGAATTGTTGGACAGCC

                                                 
       4037 GGGTGGATTATTCAAATTCGGGAATTGTTGGACAGCC
          1 GGGTGGATTATTCAAATTCGGGAATTGTTGGACAGCC

              
       4074 GG
          1 GG

       4076 ATTGGTTCGG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.24, C:0.12, G:0.34, T:0.30


Consensus pattern (37 bp):   
GGGTGGATTATTCAAATTCGGGAATTGTTGGACAGCC
Done.