Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold3352.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 138847
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1467 characters in sequence are not A, C, G, or T
Found at i:252 original size:19 final size:18
Alignment explanation
Indices: 215--256 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
205 GGAGAGAGTG
*
215 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
233 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
252 TTATT
1 TTATT
257 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:315 original size:33 final size:39
Alignment explanation
Indices: 241--322 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
231 TATTATTTTC
*
241 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
280 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
313 TATTACTATT
1 TATTACTATT
323 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:352 original size:23 final size:23
Alignment explanation
Indices: 268--352 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
258 CTAATACCAC
* *
268 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
291 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * *
316 TACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
339 TATTATTATATTTT
1 TATTATTATATTTT
353 CTTTTTTTTT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 1 0.02
23 30 0.65
24 9 0.20
25 6 0.13
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:977 original size:61 final size:61
Alignment explanation
Indices: 902--1022 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
892 CCTCGAAGTA
*
902 AGAATTTGTTTTAAAATAAAGGCAATTTTTGGTATTAGGAAATTTGAGAAAACGTGCCCTC
1 AGAATTTGTTTTAAAATAAAGGCAATTTTTGGTATTAGGAAATTCGAGAAAACGTGCCCTC
*
963 AGAATTTGTTTTAAAATAAAGGCAATTTTTGGTATTAGGAAATTCGAGAAAATGTGCCCT
1 AGAATTTGTTTTAAAATAAAGGCAATTTTTGGTATTAGGAAATTCGAGAAAACGTGCCCT
1023 AACTTACTGG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (61 bp):
AGAATTTGTTTTAAAATAAAGGCAATTTTTGGTATTAGGAAATTCGAGAAAACGTGCCCTC
Found at i:5786 original size:16 final size:16
Alignment explanation
Indices: 5761--5792 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
5751 CAAGCTATAA
5761 TTTCTCTTTTCTTTTT
1 TTTCTCTTTTCTTTTT
*
5777 TTTCTTTTTTCTTTTT
1 TTTCTCTTTTCTTTTT
5793 GTTGTTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTCTCTTTTCTTTTT
Found at i:6265 original size:21 final size:21
Alignment explanation
Indices: 6216--6265 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
6206 AATAAGCCCT
* *
6216 TAAATTAAAAAAATAATTGTT
1 TAAATTAAAAAAATAAATGTA
*
6237 TAATTTAAAAAAATAAAAT-TA
1 TAAATTAAAAAAAT-AAATGTA
6258 TAAATTAA
1 TAAATTAA
6266 TATATAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAATTAAAAAAATAAATGTA
Found at i:6700 original size:3 final size:3
Alignment explanation
Indices: 6694--6722 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6684 ACCATCATCA
6694 TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
6723 ATCATCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
TCG
Found at i:10075 original size:21 final size:23
Alignment explanation
Indices: 10028--10078 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
10018 CATTCAAGAT
**
10028 AAAATAATATATAAAACTCCTTA
1 AAAATAATATATAAAACTAATTA
*
10051 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
10072 AAAATAA
1 AAAATAA
10079 ATAATGTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 4 0.16
23 12 0.48
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:10132 original size:52 final size:49
Alignment explanation
Indices: 10054--10152 Score: 121
Period size: 52 Copynumber: 2.0 Consensus size: 49
10044 CTCCTTAAAA
*
10054 ATAATATATAAACAATTCAAAATAAATAATGTGTGAAAAAAGTTTGAAATAC
1 ATAATATATAAACAATTCAAAATAAATAATGTAT--AAAAA-TTTGAAATAC
*
10106 ATAATATATGAAA-ATATT-AAAGTAAATAATGTATAAAAATTTGAAAT
1 ATAATATAT-AAACA-ATTCAAAATAAATAATGTATAAAAATTTGAAAT
10153 GAGCATTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
49 8 0.19
50 5 0.12
52 24 0.56
53 6 0.14
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (49 bp):
ATAATATATAAACAATTCAAAATAAATAATGTATAAAAATTTGAAATAC
Found at i:10206 original size:4 final size:4
Alignment explanation
Indices: 10197--10225 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
10187 AAAAAATGTA
10197 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
10226 GAATGTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:10322 original size:15 final size:15
Alignment explanation
Indices: 10298--10343 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
10288 ATATAAATAG
*
10298 AAATAAAAATATAAT
1 AAATAGAAATATAAT
10313 AAATAGAAATATAAT
1 AAATAGAAATATAAT
10328 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
10344 ATAGGTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:10331 original size:23 final size:25
Alignment explanation
Indices: 10273--10334 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 25
10263 AAATAGTAAT
*
10273 GAAA-ATAATATTAGTATATAAATA
1 GAAATATAATAATAGTATATAAATA
10297 GAAATA-AA-AATA-TA-ATAAATA
1 GAAATATAATAATAGTATATAAATA
10318 GAAATATAATAATAGTA
1 GAAATATAATAATAGTA
10335 GAAATATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
21 13 0.39
22 4 0.12
23 7 0.21
24 8 0.24
25 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (25 bp):
GAAATATAATAATAGTATATAAATA
Found at i:10369 original size:15 final size:14
Alignment explanation
Indices: 10290--10376 Score: 52
Period size: 15 Copynumber: 6.0 Consensus size: 14
10280 ATATTAGTAT
*
10290 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
10303 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
10319 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
10333 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
*
10348 GTAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
10363 ATAAATAATAATAG
1 ATAAATAAAAATAG
10377 TATTAGAATA
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
13 3 0.05
14 19 0.33
15 33 0.57
16 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:10942 original size:5 final size:5
Alignment explanation
Indices: 10934--10961 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
10924 ATAATTTAAT
10934 AATAA AATAA AATAA AATAA AATAA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
10962 CATATCTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:11352 original size:26 final size:26
Alignment explanation
Indices: 11315--11398 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
11305 TGATACAAAT
* *
11315 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11341 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11367 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11393 TGATAA
1 TGATAA
11399 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:13119 original size:27 final size:26
Alignment explanation
Indices: 13015--13129 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 26
13005 TGGAGGAAGC
* * *
13015 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-ATTATCT
**
13042 AATCTGGTGGCTCT-TCCACATATATCT
1 GTTCTGGTGGCTCTGT-CACAT-TATCT
* *
13069 GTTCTGGTGGCACTGCCACGATTATCT
1 GTTCTGGTGGCTCTGTCAC-ATTATCT
*
13096 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGTCACATTATCT
13123 GTTCTGG
1 GTTCTGG
13130 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
26 6 0.08
27 49 0.69
28 16 0.23
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACATTATCT
Found at i:13122 original size:54 final size:54
Alignment explanation
Indices: 13015--13129 Score: 146
Period size: 54 Copynumber: 2.1 Consensus size: 54
13005 TGGAGGAAGC
*
13015 GTTCTGGTGGCTATGCCACAAATATCTAATCTGGTGGCTCTTCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTAATCTGGTGACTCTTCCACATATATCT
* * *
13069 GTTCTGGTGGC-ACTGCCACGATTATCTGTATCTGGTGACTCTGT-CACAT-TATCT
1 GTTCTGGTGGCTA-TGCCACAAATATCT-AATCTGGTGACTCT-TCCACATATATCT
13123 GTTCTGG
1 GTTCTGG
13130 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
53 1 0.02
54 35 0.65
55 17 0.31
56 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTAATCTGGTGACTCTTCCACATATATCT
Found at i:18357 original size:43 final size:43
Alignment explanation
Indices: 18297--18381 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
18287 AATCAAATTT
*
18297 TTTTATTGAAGTTATTCTACTTATAAGCTTTCACATATAACCA
1 TTTTATTGAAGTTATTCTACTTATAAGCTTTCACACATAACCA
*
18340 TTTTATTGAAGTTATTCTACTTATAAGCTTTCAGACATAACC
1 TTTTATTGAAGTTATTCTACTTATAAGCTTTCACACATAACC
18382 GTGCTTCTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (43 bp):
TTTTATTGAAGTTATTCTACTTATAAGCTTTCACACATAACCA
Found at i:18400 original size:35 final size:35
Alignment explanation
Indices: 18354--18425 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
18344 ATTGAAGTTA
18354 TTCTACTTATAAGCTTTCAGACATAACCGTGCTTC
1 TTCTACTTATAAGCTTTCAGACATAACCGTGCTTC
* *
18389 TTCTACTTATAAGCTTTCAGATATAACTGTGCTTC
1 TTCTACTTATAAGCTTTCAGACATAACCGTGCTTC
18424 TT
1 TT
18426 TAGATATGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (35 bp):
TTCTACTTATAAGCTTTCAGACATAACCGTGCTTC
Found at i:19887 original size:30 final size:30
Alignment explanation
Indices: 19843--19955 Score: 117
Period size: 30 Copynumber: 3.9 Consensus size: 30
19833 TTTAACGAAC
* *
19843 TTGCTCACATAAGCTGACTTTATATTAGAA
1 TTGCTCACACAAGCTGACTTTATAATAGAA
*
19873 TTGTTCACACAAGCTGACTTTATAATAGAA
1 TTGCTCACACAAGCTGACTTTATAATAGAA
** *
19903 TTGCTCACACAAATTGAC-TT-T-GT-GAA
1 TTGCTCACACAAGCTGACTTTATAATAGAA
* * *
19929 TTGCTCACATAAGTTGACTTTGTAATA
1 TTGCTCACACAAGCTGACTTTATAATA
19956 TTTCCATACA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
26 19 0.28
27 3 0.04
28 2 0.03
29 3 0.04
30 42 0.61
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACTTTATAATAGAA
Found at i:19929 original size:26 final size:26
Alignment explanation
Indices: 19900--19951 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
19890 CTTTATAATA
19900 GAATTGCTCACACAAATTGACTTTGT
1 GAATTGCTCACACAAATTGACTTTGT
* *
19926 GAATTGCTCACATAAGTTGACTTTGT
1 GAATTGCTCACACAAATTGACTTTGT
19952 AATATTTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (26 bp):
GAATTGCTCACACAAATTGACTTTGT
Found at i:22465 original size:28 final size:28
Alignment explanation
Indices: 22430--22484 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
22420 TAAAATTATA
22430 AATAATATTGGTAATCCCCCAAAAAAAT
1 AATAATATTGGTAATCCCCCAAAAAAAT
*
22458 AATAATATTGGTAATCCCCCCAAAAAA
1 AATAATATTGGTAATCCCCCAAAAAAA
22485 CAAGCTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (28 bp):
AATAATATTGGTAATCCCCCAAAAAAAT
Found at i:28723 original size:21 final size:21
Alignment explanation
Indices: 28697--28737 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
28687 AGACGAGCGA
* *
28697 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
28718 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
28738 TTGAGCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:33387 original size:23 final size:23
Alignment explanation
Indices: 33357--33406 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
33347 AATTTCAATA
33357 AAAATCATTAAATAATAATAATG
1 AAAATCATTAAATAATAATAATG
33380 AAAATCATTAAATAATAATAATG
1 AAAATCATTAAATAATAATAATG
33403 AAAA
1 AAAA
33407 CATAAAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (23 bp):
AAAATCATTAAATAATAATAATG
Found at i:37245 original size:13 final size:14
Alignment explanation
Indices: 37229--37270 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
37219 TTTCAATTTT
37229 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
37242 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
37257 ATTTTAAATAATAT
1 ATTTT-AATAATAT
37271 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:37255 original size:16 final size:16
Alignment explanation
Indices: 37233--37269 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
37223 AATTTTATTT
37233 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
37250 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
37265 TAATA
1 TAATA
37270 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:40739 original size:17 final size:18
Alignment explanation
Indices: 40726--40920 Score: 126
Period size: 18 Copynumber: 10.9 Consensus size: 18
40716 TAATCTTCAA
40726 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
40745 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
40762 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
40781 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
40797 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
40816 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
40832 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
40851 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
40867 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
40886 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
40904 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
40921 AGATATGATT
Statistics
Matches: 147, Mismatches: 9, Indels: 40
0.75 0.05 0.20
Matches are distributed among these distances:
15 6 0.04
16 5 0.03
17 46 0.31
18 50 0.34
19 32 0.22
20 8 0.05
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:40795 original size:35 final size:35
Alignment explanation
Indices: 40733--40920 Score: 340
Period size: 35 Copynumber: 5.3 Consensus size: 35
40723 CAATGATATG
*
40733 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
40769 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
40804 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
40839 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
40874 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
40911 CAATCTTAGA
1 CAATCTTAGA
40921 AGATATGATT
Statistics
Matches: 149, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
35 121 0.81
36 15 0.10
37 13 0.09
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:48192 original size:205 final size:205
Alignment explanation
Indices: 47820--48575 Score: 1181
Period size: 205 Copynumber: 3.7 Consensus size: 205
47810 GATCTGGCTA
* *
47820 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCCTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* * *
47885 TTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCCCTGTATTGTCAGAGA
65 TTGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * * *
47950 ACAAATCAAAGTCTGGCATCTCCATTTCGACAGAGAGTAGATACATAGCAAATCT-AGCCTTCAG
130 ACAAATCGAAGTCTGGCATCTCCAATTCAATAGAGAGTAGATACATAGCAGATCTCA-CCTTCAG
*
48014 ATGTTTATACTG
194 ATGTTTATGCTG
* *
48026 AAACAGATCCAAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
* * * *
48091 TGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTATGTAATGTCAGAGAA
66 TGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
* *
48156 CAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGTAGATACATAGCAGATCTCACCTTCAGAT
131 CAAATCGAAGTCTGGCATCTCCAATTCAATAGAGAGTAGATACATAGCAGATCTCACCTTCAGAT
48221 GTTTATGCTG
196 GTTTATGCTG
* *
48231 AAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGATATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
* * * * *
48296 TGGCTTTCATGTATTTACGATGAAGCAAATCTAAGATAATTTGTCGTCTCTGTAGTGTCAGAGAA
66 TGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
* *
48361 CAAATCGAAGTCTGGCATCTCCAATTCAATAGAGAGCAGATACATGGCAGATCTCACCTTCAGAT
131 CAAATCGAAGTCTGGCATCTCCAATTCAATAGAGAGTAGATACATAGCAGATCTCACCTTCAGAT
48426 GTTTATGCTG
196 GTTTATGCTG
*
48436 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
** * * *
48501 TGGCTTTCACGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGAA
66 TGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
48566 CAAATCGAAG
131 CAAATCGAAG
48576 AAGTTAATTT
Statistics
Matches: 506, Mismatches: 43, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
205 502 0.99
206 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATT
TGGCTTTCACGTATTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
CAAATCGAAGTCTGGCATCTCCAATTCAATAGAGAGTAGATACATAGCAGATCTCACCTTCAGAT
GTTTATGCTG
Found at i:48950 original size:17 final size:19
Alignment explanation
Indices: 48928--48969 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
48918 ATGGAAATAT
48928 AATCTTTA-A-TGATATGC
1 AATCTTTAGAGTGATATGC
48945 AATC-TTAGATGTGATATGC
1 AATCTTTAGA-GTGATATGC
48964 AATCTT
1 AATCTT
48970 AGATATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 3 0.14
17 5 0.24
19 12 0.57
20 1 0.05
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (19 bp):
AATCTTTAGAGTGATATGC
Found at i:49006 original size:35 final size:35
Alignment explanation
Indices: 48944--49511 Score: 1118
Period size: 35 Copynumber: 16.2 Consensus size: 35
48934 TAATGATATG
*
48944 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
48980 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49015 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49050 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49085 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49120 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49155 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49190 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49225 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49260 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49295 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49330 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49365 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49400 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49435 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49470 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
49505 CAATCTT
1 CAATCTT
49512 NNNNNNNNNN
Statistics
Matches: 531, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
35 516 0.97
36 15 0.03
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:54236 original size:23 final size:23
Alignment explanation
Indices: 54208--54259 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
54198 TAGATCTTTC
*
54208 CTAAATATTATCACTAGATAATT
1 CTAAATATTATCACTAAATAATT
54231 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
54254 CAAAAT
1 CTAAAT
54260 TTAAAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:56573 original size:29 final size:29
Alignment explanation
Indices: 56540--56631 Score: 111
Period size: 29 Copynumber: 3.2 Consensus size: 29
56530 TTAATCGAAA
56540 TAAATAACAAGAGTTTACAAAAAGACAAG
1 TAAATAACAAGAGTTTACAAAAAGACAAG
* **
56569 TAAATAA-ACGAAG-TTAC-AAAATTCACA-
1 TAAATAACAAG-AGTTTACAAAAAGACA-AG
56596 TAAATAACAAGAGTTTACAAAAAGACAAG
1 TAAATAACAAGAGTTTACAAAAAGACAAG
56625 TAAATAA
1 TAAATAA
56632 ACAACACTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
27 15 0.29
28 14 0.27
29 22 0.43
ACGTcount: A:0.59, C:0.11, G:0.11, T:0.20
Consensus pattern (29 bp):
TAAATAACAAGAGTTTACAAAAAGACAAG
Found at i:56613 original size:28 final size:28
Alignment explanation
Indices: 56538--56631 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 28
56528 GATTAATCGA
*
56538 AATAAATAACAAGAGTTTACAAAAAGAC
1 AATAAATAACAAGAGTTTACAAAAACAC
* *
56566 AAGTAAATAA-ACGAAG-TTACAAAATTCAC
1 AA-TAAATAACAAG-AGTTTACAAAA-ACAC
*
56595 -ATAAATAACAAGAGTTTACAAAAAGAC
1 AATAAATAACAAGAGTTTACAAAAACAC
56622 AAGTAAATAA
1 AA-TAAATAA
56632 ACAACACTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
27 11 0.21
28 24 0.45
29 18 0.34
ACGTcount: A:0.60, C:0.11, G:0.11, T:0.19
Consensus pattern (28 bp):
AATAAATAACAAGAGTTTACAAAAACAC
Found at i:56642 original size:29 final size:28
Alignment explanation
Indices: 56554--56642 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 28
56544 TAACAAGAGT
* *
56554 TTACAAAAAGACAAGTAAATAAACGAAG
1 TTACAAAAAGACAAGTAAATAAACAAAC
** *
56582 TTAC-AAAATTCACA-TAAAT-AACAAGAGT
1 TTACAAAAAGACA-AGTAAATAAACAA-A-C
56610 TTACAAAAAGACAAGTAAATAAACAACAC
1 TTACAAAAAGACAAGTAAATAAACAA-AC
56639 TTAC
1 TTAC
56643 TTTGGTTGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
26 4 0.09
27 12 0.26
28 10 0.21
29 15 0.32
30 6 0.13
ACGTcount: A:0.57, C:0.15, G:0.09, T:0.19
Consensus pattern (28 bp):
TTACAAAAAGACAAGTAAATAAACAAAC
Found at i:57498 original size:15 final size:15
Alignment explanation
Indices: 57478--57513 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
57468 ATAAGCCCTC
57478 AAATTAAAAAAATAA
1 AAATTAAAAAAATAA
57493 AAATTAAAAAAATAA
1 AAATTAAAAAAATAA
57508 AAATTA
1 AAATTA
57514 TAATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAATTAAAAAAATAA
Found at i:57541 original size:23 final size:23
Alignment explanation
Indices: 57496--57538 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
57486 AAAATAAAAA
57496 TTAAAAAAATAAAAATTATAATT
1 TTAAAAAAATAAAAATTATAATT
57519 TTAAAAAAAT-AAAATTATAA
1 TTAAAAAAATAAAAATTATAA
57539 ATTAATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAAAAAAATAAAAATTATAATT
Found at i:62700 original size:26 final size:26
Alignment explanation
Indices: 62641--62705 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
62631 AGCGAGTCGT
*
62641 ATCAGGAAGCTCACAAAGAGCCAATT
1 ATCAGGAAGCTCACAAAGAGCCAATG
* * * *
62667 AACGGGAAGCTCACGAAGAGCCTATG
1 ATCAGGAAGCTCACAAAGAGCCAATG
62693 ATCAGGAAGCTCA
1 ATCAGGAAGCTCA
62706 TAAGAGCTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.14
Consensus pattern (26 bp):
ATCAGGAAGCTCACAAAGAGCCAATG
Found at i:62801 original size:25 final size:24
Alignment explanation
Indices: 62771--62832 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
62761 CAAAGAGCAT
*
62771 TAACGGGAAGCTCGCAAGAACCATA
1 TAACGGGAAGCTCACAAGAACCA-A
* *
62796 TAACGGGAAGCTCACAAGAGCTAA
1 TAACGGGAAGCTCACAAGAACCAA
*
62820 TAACGGGACGCTC
1 TAACGGGAAGCTC
62833 TTTTGAGCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
24 13 0.39
25 20 0.61
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (24 bp):
TAACGGGAAGCTCACAAGAACCAA
Found at i:62827 original size:24 final size:23
Alignment explanation
Indices: 62763--62832 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 23
62753 GGATGCTTCA
* *
62763 AAGAGCATTAACGGGAAGCTCGC
1 AAGAGCAATAACGGGAAGCTCAC
*
62786 AAGAACCATATAACGGGAAGCTCAC
1 AAG-AGCA-ATAACGGGAAGCTCAC
*
62811 AAGAGCTAATAACGGGACGCTC
1 AAGAGC-AATAACGGGAAGCTC
62833 TTTTGAGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.08
24 18 0.46
25 18 0.46
ACGTcount: A:0.39, C:0.23, G:0.26, T:0.13
Consensus pattern (23 bp):
AAGAGCAATAACGGGAAGCTCAC
Found at i:67358 original size:31 final size:31
Alignment explanation
Indices: 67323--67384 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
67313 TTTACAATTC
*
67323 CTCAATTATTTGGATTAGATTGAAAAACAAT
1 CTCAATTATTTGGATTAGATTCAAAAACAAT
67354 CTCAATTATTTGGATTAGATTCAAAAACAAT
1 CTCAATTATTTGGATTAGATTCAAAAACAAT
67385 TGACACTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.35
Consensus pattern (31 bp):
CTCAATTATTTGGATTAGATTCAAAAACAAT
Found at i:68782 original size:39 final size:39
Alignment explanation
Indices: 68724--68801 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
68714 CCTTTTTTTT
68724 ATTTTTTTATTTTCCGAATTTATTTATATATTCCAACTC
1 ATTTTTTTATTTTCCGAATTTATTTATATATTCCAACTC
*
68763 ATTTTTTTATTTTCTGAATTTATTTATATATTCCAACTC
1 ATTTTTTTATTTTCCGAATTTATTTATATATTCCAACTC
68802 TTTCTTGCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.03, T:0.58
Consensus pattern (39 bp):
ATTTTTTTATTTTCCGAATTTATTTATATATTCCAACTC
Found at i:72600 original size:43 final size:43
Alignment explanation
Indices: 72554--72737 Score: 287
Period size: 43 Copynumber: 4.3 Consensus size: 43
72544 GTTAATTAAA
* * *
72554 AAAAAGCGCCGCTAAAAGTCATAGCCTTTAGCAGCGTTTGAAA
1 AAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAG
*
72597 AAAAAGCGCCGCTAAAAGTCGTGGCCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAG
* *
72640 AAAAAGCGCCGCTAAAAGTCGTGACCTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAG
* *
72683 AAAAAGCACCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGAAG
1 AAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAG
*
72726 AAAAAGTGCCGC
1 AAAAAGCGCCGC
72738 CAATTTTGGC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAAGTCATGGCCTTTAGCGGCGTTTGAAG
Found at i:73120 original size:15 final size:16
Alignment explanation
Indices: 73102--73131 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73092 CCCTCGCTGC
73102 TGCTGCCTCC-CTCTT
1 TGCTGCCTCCGCTCTT
73117 TGCTGCCTCCGCTCT
1 TGCTGCCTCCGCTCT
73132 AAGTTGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.00, C:0.47, G:0.17, T:0.37
Consensus pattern (16 bp):
TGCTGCCTCCGCTCTT
Found at i:73122 original size:18 final size:18
Alignment explanation
Indices: 73061--73114 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 18
73051 CTTTTTCCTA
73061 TGCT-CTGCCTCCCTCGC
1 TGCTGCTGCCTCCCTCGC
73078 TGCTGTCGCTGCCTCCCTCGC
1 TGC--T-GCTGCCTCCCTCGC
73099 TGCTGCTGCCTCCCTC
1 TGCTGCTGCCTCCCTC
73115 TTTGCTGCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
17 3 0.09
18 12 0.36
19 2 0.06
21 16 0.48
ACGTcount: A:0.00, C:0.50, G:0.20, T:0.30
Consensus pattern (18 bp):
TGCTGCTGCCTCCCTCGC
Found at i:73560 original size:13 final size:14
Alignment explanation
Indices: 73535--73563 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73525 TGATGAATTG
73535 AATTAAACAATTAT
1 AATTAAACAATTAT
73549 AATTAAAC-ATTAT
1 AATTAAACAATTAT
73562 AA
1 AA
73564 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:73767 original size:16 final size:17
Alignment explanation
Indices: 73730--73768 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
73720 AAAATATTAT
*
73730 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
73747 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
73763 TTAATA
1 TTAATA
73769 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:78784 original size:9 final size:9
Alignment explanation
Indices: 78770--78959 Score: 98
Period size: 9 Copynumber: 20.6 Consensus size: 9
78760 TATTTAAGTA
78770 TTATGTAAG
1 TTATGTAAG
78779 TTATGTAAG
1 TTATGTAAG
*
78788 TTATGATATG
1 TTATG-TAAG
* * *
78798 ATATAT-AT
1 TTATGTAAG
*
78806 TTATGTAAA
1 TTATGTAAG
* *
78815 TTATAT-AT
1 TTATGTAAG
* *
78823 TTATCTGAG
1 TTATGTAAG
*
78832 TTATATAAG
1 TTATGTAAG
78841 TTATGTAAG
1 TTATGTAAG
*
78850 TTATGTAAA
1 TTATGTAAG
*
78859 TTATGATATAAAA
1 TTATG---T-AAG
*
78872 TATATTTAAG
1 T-TATGTAAG
78882 TATTATGTAAG
1 --TTATGTAAG
78893 TTATGTAAG
1 TTATGTAAG
* *
78902 TTATAT-AT
1 TTATGTAAG
*
78910 TTATCTAAG
1 TTATGTAAG
*
78919 TTATATAAG
1 TTATGTAAG
*
78928 TTATGTACG
1 TTATGTAAG
*
78937 TTTTGTAAG
1 TTATGTAAG
* *
78946 TTATATAAA
1 TTATGTAAG
78955 TTATG
1 TTATG
78960 ATATCAAATA
Statistics
Matches: 138, Mismatches: 32, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
8 16 0.12
9 97 0.70
10 8 0.06
11 8 0.06
12 2 0.01
13 4 0.03
14 3 0.02
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:78852 original size:71 final size:69
Alignment explanation
Indices: 78770--78932 Score: 193
Period size: 71 Copynumber: 2.3 Consensus size: 69
78760 TATTTAAGTA
* * * * *
78770 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTGAGTT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGT--ATTATATAAGTTATCTAAGTT
78834 ATATAAG
64 ATAT-AG
* * *
78841 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
*
78906 ATAT
66 ATAG
* *
78910 TTATCTAAGTTATATAAGTTATG
1 TTATGTAAGTTATGTAAGTTATG
78933 TACGTTTTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 27 0.34
70 14 0.18
71 38 0.48
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (69 bp):
TTATGTAAGTTATGTAAGTTATGATATAAAATATATTTAAGTATTATATAAGTTATCTAAGTTAT
ATAG
Found at i:78908 original size:87 final size:90
Alignment explanation
Indices: 78806--78990 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 90
78796 TGATATATAT
* *
78806 TTATGTAAATTATATATTTATCTGAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
78868 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
*
78893 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
78958 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
78989 TT
1 TT
78991 TTTTATTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
87 33 0.39
90 1 0.01
91 2 0.02
96 48 0.57
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:78948 original size:114 final size:114
Alignment explanation
Indices: 78746--78959 Score: 281
Period size: 114 Copynumber: 1.9 Consensus size: 114
78736 ACTAGTTATG
* * * *
78746 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
78811 TAAATTATATATTTATCTGAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
* *
78860 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
78923 ATAAGTTATGTACGTTT-TGTAAGTTATATAAATTATG
65 ATAAATTATATA--TTTATCTAAGTTATATAAATTATG
78960 ATATCAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
112 4 0.05
113 18 0.21
114 61 0.71
115 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAAAT
Found at i:78998 original size:87 final size:87
Alignment explanation
Indices: 78806--78990 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 87
78796 TGATATATAT
* *
78806 TTATGTAAATTATATATTTATCTGAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
** *
78871 ATATATTTAAGTATTATGTAAG
66 ATATATCAAAATATTATGTAAG
* * *
78893 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTAT-ATA-AAT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAA-
*
78956 TATGATATCAAATATATTTATGT-A-
65 AAT-ATATCAAA-ATA-TTATGTAAG
78980 TTATGTAAGTT
1 TTATGTAAGTT
78991 TTTTATTTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
85 2 0.02
86 5 0.06
87 69 0.81
88 3 0.04
89 6 0.07
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (87 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAA
ATATATCAAAATATTATGTAAG
Found at i:79084 original size:15 final size:15
Alignment explanation
Indices: 79064--79119 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
79054 AAGTAGCGGG
79064 ATTAAATAATATTTA
1 ATTAAATAATATTTA
79079 ATTAAATAATATTT-
1 ATTAAATAATATTTA
79093 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
79108 ATTAAGTAATAT
1 ATTAAATAATAT
79120 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:80099 original size:358 final size:359
Alignment explanation
Indices: 79445--80127 Score: 1314
Period size: 358 Copynumber: 1.9 Consensus size: 359
79435 TTGAATCTTT
*
79445 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATAATAAT
79510 ATAAAAAAAGAATCGTAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGA
66 ATAAAAAAAGAATCGTAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGA
79575 GCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
131 GCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
79640 ACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
196 ACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
*
79705 ATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTT
261 ATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGACAGCCATTGTTGTAATTTT
79770 GATAAAAATTAGTTATAACTTTTAAAGACATTTA
326 GATAAAAATTAGTTATAACTTTTAAAGACATTTA
* *
79804 AAAATA-TTAAATATTAAAATCAAACATTATTAATGCAAAAAATTAGTAATTTGAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATAATAAT
79868 ATAAAAAAAGAATCGTAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGA
66 ATAAAAAAAGAATCGTAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGA
79933 GCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
131 GCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
79998 ACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
196 ACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
*
80063 ATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGACATCCATTGTTGTAATTTT
261 ATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGACAGCCATTGTTGTAATTTT
80128 AATGGACAAG
Statistics
Matches: 319, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
358 313 0.98
359 6 0.02
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (359 bp):
AAAATATTTAAATATTAAAATCAAACATTATTAATACAAAAAAATAGTAATTTGAATATAATAAT
ATAAAAAAAGAATCGTAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGA
GCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
ACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
ATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGACAGCCATTGTTGTAATTTT
GATAAAAATTAGTTATAACTTTTAAAGACATTTA
Found at i:83411 original size:16 final size:17
Alignment explanation
Indices: 83392--83427 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
83382 ATTATTTAAT
83392 ATATAAA-TAAAAAACA
1 ATATAAATTAAAAAACA
83408 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
83425 ATA
1 ATA
83428 AGTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:83584 original size:16 final size:16
Alignment explanation
Indices: 83540--83588 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
83530 TACATAAAAT
*
83540 TTAAAATCTTGAAAATTA
1 TTAAAAT-TTG-AAATCA
*
83558 TTGACAATTTGAAATCA
1 TT-AAAATTTGAAATCA
83575 TTAAAATTTGAAAT
1 TTAAAATTTGAAAT
83589 TATTTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 5 0.19
19 4 0.15
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (16 bp):
TTAAAATTTGAAATCA
Found at i:83744 original size:8 final size:8
Alignment explanation
Indices: 83703--83757 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
83693 CACTAATTAT
83703 CCTAAA-C
1 CCTAAACC
*
83710 CCTTAACC
1 CCTAAACC
*
83718 CCTATATCC
1 CCTA-AACC
* *
83727 CATTAACC
1 CCTAAACC
83735 CCTAAACC
1 CCTAAACC
83743 CCTAAA-C
1 CCTAAACC
83750 CCTAAACC
1 CCTAAACC
83758 ATTAACCCTT
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
7 12 0.32
8 20 0.54
9 5 0.14
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.20
Consensus pattern (8 bp):
CCTAAACC
Found at i:83754 original size:15 final size:15
Alignment explanation
Indices: 83703--83765 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
83693 CACTAATTAT
83703 CCTAAACCCTTAACC
1 CCTAAACCCTTAACC
*
83718 CCTATATCCCATTAACC
1 CCTA-AACCC-TTAACC
* *
83735 CCTAAACCCCTAAAC
1 CCTAAACCCTTAACC
*
83750 CCTAAACCATTAACC
1 CCTAAACCCTTAACC
83765 C
1 C
83766 TTAATCCCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
15 21 0.54
16 8 0.21
17 10 0.26
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (15 bp):
CCTAAACCCTTAACC
Found at i:83838 original size:73 final size:72
Alignment explanation
Indices: 83733--83900 Score: 194
Period size: 73 Copynumber: 2.3 Consensus size: 72
83723 ATCCCATTAA
* * *
83733 CCCCTAAACCCCTAAACCCTAAACCATTAACCCTTAATCCCTAAAATTTAAACACTAAACCTTAA
1 CCCCTAAACCCCTAAACCCTAAACCATAAACCCTTAATCCATAAAATTTAAACACTAAACCCTAA
*
83798 ACAATGT
66 ACAATAT
* * * * *
83805 CCCCTTAACTCCC-AAACCCATAAACCCTAAACCCTTAATCCATAGACTTTGAACACTAAACCCT
1 CCCCTAAAC-CCCTAAACCC-TAAACCATAAACCCTTAATCCATAAAATTTAAACACTAAACCCT
*
83869 AAACTATAT
64 AAACAATAT
* *
83878 CCCCTCAACCCCTTAACTCCTAA
1 CCCCTAAACCCCTAAAC-CCTAA
83901 CCTTTGACCC
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
72 17 0.21
73 61 0.76
74 2 0.03
ACGTcount: A:0.38, C:0.37, G:0.02, T:0.23
Consensus pattern (72 bp):
CCCCTAAACCCCTAAACCCTAAACCATAAACCCTTAATCCATAAAATTTAAACACTAAACCCTAA
ACAATAT
Found at i:84126 original size:7 final size:7
Alignment explanation
Indices: 84114--84152 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
84104 ATTAACTTGT
*
84114 CATAATC
1 CATAAAC
*
84121 CATAATC
1 CATAAAC
84128 CATAAAC
1 CATAAAC
84135 CATAAAC
1 CATAAAC
84142 CATAAAC
1 CATAAAC
84149 CATA
1 CATA
84153 TATACCCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (7 bp):
CATAAAC
Found at i:84971 original size:41 final size:42
Alignment explanation
Indices: 84867--84987 Score: 194
Period size: 42 Copynumber: 2.9 Consensus size: 42
84857 GATCTTTAGT
*
84867 GGCGTTTTTCCAAAAAGCACCGCTGAAACTCATATCTATTGC
1 GGCGTTTTTCCAAAAAGCGCCGCTGAAACTCATATCTATTGC
84909 GGCGTTTTTCCAAAAAGCGCCGCTGAAACTCATATCTATTGC
1 GGCGTTTTTCCAAAAAGCGCCGCTGAAACTCATATCTATTGC
*
84951 GGCG-TTTTCTAAAAAGCGCCGCT-AATACTCA-ATCTAT
1 GGCGTTTTTCCAAAAAGCGCCGCTGAA-ACTCATATCTAT
84988 AGTGGTGTTT
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
40 8 0.11
41 23 0.30
42 45 0.59
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
GGCGTTTTTCCAAAAAGCGCCGCTGAAACTCATATCTATTGC
Found at i:84998 original size:40 final size:42
Alignment explanation
Indices: 84858--84999 Score: 182
Period size: 42 Copynumber: 3.4 Consensus size: 42
84848 AATAGTTTAG
* * *
84858 ATCTTTAGTGGCGTTTTTCCAAAAAGCACCGCTGAAACTCAT
1 ATCTATAGCGGCGTTTTTCCAAAAAGCGCCGCTGAAACTCAT
*
84900 ATCTATTGCGGCGTTTTTCCAAAAAGCGCCGCTGAAACTCAT
1 ATCTATAGCGGCGTTTTTCCAAAAAGCGCCGCTGAAACTCAT
* *
84942 ATCTATTGCGGCG-TTTTCTAAAAAGCGCCGCT-AATACTCA-
1 ATCTATAGCGGCGTTTTTCCAAAAAGCGCCGCTGAA-ACTCAT
* *
84982 ATCTATAGTGGTGTTTTT
1 ATCTATAGCGGCGTTTTT
85000 GCGCAAGCGC
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
40 12 0.13
41 27 0.30
42 51 0.57
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (42 bp):
ATCTATAGCGGCGTTTTTCCAAAAAGCGCCGCTGAAACTCAT
Found at i:85252 original size:154 final size:154
Alignment explanation
Indices: 84956--85322 Score: 495
Period size: 154 Copynumber: 2.4 Consensus size: 154
84946 ATTGCGGCGT
* * * ***
84956 TTTCTAAAAAGCGCCGCTAATACTCAATCTATAGTGGTGTTTTTGCGCAAGCGCCGCTATTGCCA
1 TTTCTAAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTATTGCCA
* * * *
85021 GTGAAGCTCAAAATAAACGACGCCGTTCGGTTTAATTTTTTAGCTGCGTTTCTATAAAAACGCCG
66 CTGAAGCTCAAAATAAACGACGCCGTTCGATCTAATCTTTTAGCTGCGTTTCTATAAAAACGCCG
85086 CTATAGGCCGACCTATAGCGGCAC
131 CTATAGGCCGACCTATAGCGGCAC
* * *
85110 TTTCTAAAAAATGCCGCTAATACTCAAACCTATAGCGGCGTTTTTGATAAAGCGCCGCTATTGCC
1 TTTCTAAAAAACGCCGCTAATACTC-AATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTATTGCC
* *
85175 ACTGAAGCTCACAATAAACGACGCCGTTC-ATCTAATCTTTTAG-TGGCGTTTTTATAAAAACGC
65 ACTGAAGCTCAAAATAAACGACGCCGTTCGATCTAATCTTTTAGCT-GCGTTTCTATAAAAACGC
* *
85238 CGCTATATGTCGACCTATAGCGGCAC
129 CGCTATAGGCCGACCTATAGCGGCAC
* * * * * *
85264 TTCCTTAAAAACGCTGCTAATTCTCGATCTATAGCGGCGTTTTTGAAAAAACGCCGCTA
1 TTTCTAAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTA
85323 ATACTCAATT
Statistics
Matches: 186, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
153 31 0.17
154 95 0.51
155 60 0.32
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (154 bp):
TTTCTAAAAAACGCCGCTAATACTCAATCTATAGCGGCGTTTTTGAAAAAGCGCCGCTATTGCCA
CTGAAGCTCAAAATAAACGACGCCGTTCGATCTAATCTTTTAGCTGCGTTTCTATAAAAACGCCG
CTATAGGCCGACCTATAGCGGCAC
Found at i:87188 original size:10 final size:9
Alignment explanation
Indices: 87173--87201 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
87163 AGACAGATTC
87173 AAAAAAAAG
1 AAAAAAAAG
87182 AAAAAAAAG
1 AAAAAAAAG
87191 AAAAAAAAG
1 AAAAAAAAG
87200 AA
1 AA
87202 GAATACTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:89048 original size:66 final size:66
Alignment explanation
Indices: 88967--89098 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
88957 ATTCATATAT
*
88967 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
89032 A
66 A
* *
89033 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
89098 A
66 A
89099 TAAGCATAGA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:89404 original size:68 final size:68
Alignment explanation
Indices: 89294--91454 Score: 3083
Period size: 68 Copynumber: 31.9 Consensus size: 68
89284 ATTACAAATT
* *
89294 TCTTCTTCCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTG
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
89359 GATC
65 AATC
* *
89363 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89428 ATC
66 ATC
* *
89431 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAACCACAGCAGATCTCCTTGAAGTTTCAATGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89496 ATC
66 ATC
* *
89499 TTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAACCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89564 ATC
66 ATC
* * *
89567 TCTTCTTCCTGAAATGGCGTTGGAGCAGCTAAAAGCCATAGTAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89632 ATC
66 ATC
* *
89635 TTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAACCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89700 ATC
66 ATC
*
89703 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89768 ATC
66 ATC
*
89771 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89836 ATC
66 ATC
*
89839 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89904 ATC
66 ATC
*
89907 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
89972 ATC
66 ATC
*
89975 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90040 ATC
66 ATC
*
90043 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90108 ATC
66 ATC
*
90111 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90176 ATC
66 ATC
*
90179 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90244 ATC
66 ATC
*
90247 TCTTCTTCCTGAAATTGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90312 ATC
66 ATC
* * *
90315 TCTTCTTCCTGAAATGGCGTTGGAGCAGCTAAAAGCCATAGTAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90380 ATC
66 ATC
*
90383 TTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90448 ATC
66 ATC
* * *
90451 TCTTCTTCCTAAAATGGCGTTGGAGTGGCTAAAAGCCACAGTAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
90516 ATC
66 ATC
* * * * * * *
90519 TCCTTC-CCCTGAAATAGCGTTGGAGTGGCTAAAAGCCATAACAAATCTCCTTGAAGTTTCAGCG
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90583 GATC
65 AATC
* * * * * * * *
90587 TCCTTC-CCCTGAAGTGGCATTGGAACGGCT-GAAGTCACAGCAGACCTCCTTGAAGTTTCAGCG
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90650 GATC
65 AATC
* * * * * * * *
90654 TCCTTC-CCCTGAAGTGGCATTGGAACGGCT-GAAGTCACAGCAGACCTCCTTGAAGTTTCAGCG
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90717 GATC
65 AATC
* * * * * * * *
90721 TCCTTC-CCCTGAAGTGGCATTGGAACGGCT-GAAGTCACAGCAGACCTCCTTGAAGTTTCAGCG
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90784 GATC
65 AATC
* * * * * * *
90788 TCCTTC-CCCTAAAATGGCGTTGGAGCGGCTAAAAGCCATAAC-GATGTCCTTGAAGTTTTAGCG
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90851 GATC
65 AATC
* * *
90855 TCCTT-TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90918 GATC
65 AATC
* *
90922 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
90985 GATC
65 AATC
* *
90989 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
91052 GATC
65 AATC
* *
91056 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
91119 GATC
65 AATC
* *
91123 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
91186 GATC
65 AATC
* *
91190 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAG-G
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
91253 GATC
65 AATC
*
91257 TCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTG
1 TCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
*
91321 GATC
65 AATC
* * *
91325 TCCTTC-CCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTTAGT-
1 T-CTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
91388 AGATC
65 A-ATC
* ** ** * *
91393 TCTTCTTCCTGAAATGGCGTTGGAACTACTAAAAGTTACAGCAGGTTTCCTTGAAGTTTCAG
1 TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
91455 CGAAAGAAGA
Statistics
Matches: 1999, Mismatches: 83, Indels: 21
0.95 0.04 0.01
Matches are distributed among these distances:
66 4 0.00
67 652 0.33
68 1329 0.66
69 14 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (68 bp):
TCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGA
ATC
Found at i:91582 original size:44 final size:43
Alignment explanation
Indices: 91529--92589 Score: 322
Period size: 44 Copynumber: 24.1 Consensus size: 43
91519 TTCTGACATT
*
91529 CCTGTGCTTACAGTGAAGCAGATCGAAAACTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * * ** *
91573 CCTATGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
91617 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * *
91661 CCTGTGCTTATAGGGAA-CA-AGTTGAA-A-GCAGCAGATTTGGCATC
1 CCTGTGCTTACAGTGAAGCAGA-TCGAAGATTCAGC--A--TGGCATC
* * * ** ** *
91705 CCTGTGCTTATAGGGAA-CAGATCAAAGATAGAAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
91749 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * * *
91793 TCTGTGCTTATAGGGAA-CTAG-TTGAA-A-ACAGCAGATTTGGCATC
1 CCTGTGCTTACAGTGAAGC-AGATCGAAGATTCAGC--A--TGGCATC
* * * ** *
91837 CCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
91881 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * * *
91925 TCTGTGCTTATAGGGAA-CTAG-TTGAA-A-ACAGCAGATTTGGCATC
1 CCTGTGCTTACAGTGAAGC-AGATCGAAGATTCAGC--A--TGGCATC
* * * ** *
91969 CCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
*
92013 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCA-CATGGAATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * *
92056 CCTGTGCTTATAGGGAA-CA-AGTTGAA-A-ACAGCAGATTTGGCATC
1 CCTGTGCTTACAGTGAAGCAGA-TCGAAGATTCAGC--A--TGGCATC
* * * ** ** *
92100 CCTGTGCTTATAGGGAA-TAGATCGAAGATAGAAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
* *
92144 CTTGTGCTTACAGTGAAACAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * ** * *
92188 CCTGTGCTTATACG-GAA-CA-AGTTGAAAACAGCAGAATTTGGCATA
1 CCTGTGCTTACA-GTGAAGCAGA-TCGAAGA-TTCAGCA--TGGCATC
* * * * ** *
92233 CCTATGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
92277 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * * * *
92321 CCTGTGTTTATAGGGAA-CA-AGTTGAAAATAGCAG-ATTTGGCATC
1 CCTGTGCTTACAGTGAAGCAGA-TCGAAGAT-TCAGCA--TGGCATC
* * * ** *
92365 CTTGTGCTTATAGGGAA-CAGATCGAAGATAGT-AG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT--TCAGCA--TGGCATC
*
92409 CCTGTGTTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
* * * *
92453 CCT-TGCTTATAGGGAA-CA-AGTTGAA-A-ACAGCAGATTTGGCATC
1 CCTGTGCTTACAGTGAAGCAGA-TCGAAGATTCAGC--A--TGGCATC
* * * ** *
92496 CCTGTGCTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGATATT
1 CCTGTGCTTACAGTGAAGCAGATCGAAGAT-TCAGCA--TGGCATC
* * *
92540 CTTGTGCTTACAATGAAGCAGATCGAAGATTTCATCATGGCATC
1 CCTGTGCTTACAGTGAAGCAGATCGAAGA-TTCAGCATGGCATC
92584 CCTGTG
1 CCTGTG
92590 TTTATAGGGA
Statistics
Matches: 769, Mismatches: 160, Indels: 176
0.70 0.14 0.16
Matches are distributed among these distances:
39 6 0.01
40 13 0.02
41 5 0.01
42 26 0.03
43 93 0.12
44 449 0.58
45 147 0.19
46 16 0.02
47 14 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
CCTGTGCTTACAGTGAAGCAGATCGAAGATTCAGCATGGCATC
Found at i:91766 original size:132 final size:132
Alignment explanation
Indices: 91566--92599 Score: 1820
Period size: 132 Copynumber: 7.8 Consensus size: 132
91556 AACTTCAGCA
*
91566 TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
*
91631 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAGCAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
91696 TT
131 TT
* *
91698 TGGCATCCCTGTGCTTATAGGGAACAGATCAAAGATAGAAGATCTGATATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
* *
91763 GAAGCAGATCGAAGATTTCAGCATGGCATCTCTGTGCTTATAGGGAACTAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
91828 TT
131 TT
91830 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
* *
91895 GAAGCAGATCGAAGATTTCAGCATGGCATCTCTGTGCTTATAGGGAACTAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
91960 TT
131 TT
91962 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
*
92027 GAAGCAGATCGAAGATTTCA-CATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
92091 TT
131 TT
* * *
92093 TGGCATCCCTGTGCTTATAGGGAATAGATCGAAGATAGAAGATCTGATATTCTTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
* *
92158 GAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATACGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAG-
92223 ATT
130 ATT
* *
92226 TGGCATACCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
* *
92291 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
92356 TT
131 TT
* * *
92358 TGGCATCCTTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGATATTCCTGTGTTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
92423 GAAGCAGATCGAAGATTTCAGCATGGCATCCCT-TGCTTATAGGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
92487 TT
131 TT
* *
92489 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCTTGTGCTTACAAT
1 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
* *
92554 GAAGCAGATCGAAGATTTCATCATGGCATCCCTGTGTTTATAGGGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGA
92600 TCAAAGAGGA
Statistics
Matches: 859, Mismatches: 40, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
131 247 0.29
132 489 0.57
133 123 0.14
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGATATTCCTGTGCTTACAGT
GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGA
TT
Found at i:92647 original size:44 final size:45
Alignment explanation
Indices: 92598--92695 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 45
92588 TGTTTATAGG
* * * *
92598 GATCAAAGAGGACAGATTTTGTGTCTCTGTATT-GTCAGAGAGCA
1 GATCAAAGAGAACAGATTTGGCGTCTCTGTATTAGACAGAGAGCA
* * * *
92642 GATCAAAGATAACAGATTTGGCGTCTTTGTATTAGACGGGGAGCA
1 GATCAAAGAGAACAGATTTGGCGTCTCTGTATTAGACAGAGAGCA
92687 GATCAAAGA
1 GATCAAAGA
92696 TAGTAGATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 28 0.62
45 17 0.38
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27
Consensus pattern (45 bp):
GATCAAAGAGAACAGATTTGGCGTCTCTGTATTAGACAGAGAGCA
Found at i:94281 original size:3 final size:3
Alignment explanation
Indices: 94273--94309 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
94263 TTTCTGCATT
94273 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
94310 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:97433 original size:26 final size:26
Alignment explanation
Indices: 97397--97480 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
97387 CATGAAATTC
97397 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
97423 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
97449 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
97475 TTATCA
1 TTATCA
97481 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102562 original size:16 final size:16
Alignment explanation
Indices: 102541--102592 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
102531 CATTTAATTA
102541 AAAATATTTAAACATT
1 AAAATATTTAAACATT
*
102557 AAAATAATT--A-ATT
1 AAAATATTTAAACATT
102570 AAATATATTTAAACATT
1 AAA-ATATTTAAACATT
102587 AAAATA
1 AAAATA
102593 ATCAAAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 6 0.20
14 6 0.20
16 12 0.40
17 6 0.20
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATATTTAAACATT
Found at i:102570 original size:30 final size:30
Alignment explanation
Indices: 102534--102594 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
102524 ATTGACACAT
102534 TTAATTAAAAATATTTAAACATTAAAATAA
1 TTAATTAAAAATATTTAAACATTAAAATAA
*
102564 TTAATTAAATATATTTAAACATTAAAATAA
1 TTAATTAAAAATATTTAAACATTAAAATAA
102594 T
1 T
102595 CAAAAAGTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (30 bp):
TTAATTAAAAATATTTAAACATTAAAATAA
Found at i:108477 original size:21 final size:21
Alignment explanation
Indices: 108452--108515 Score: 119
Period size: 21 Copynumber: 3.0 Consensus size: 21
108442 TATTCACATG
108452 CCAAACAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
108473 CCAAACAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
*
108494 CCAACCAACCAATTTATTATT
1 CCAAACAACCAATTTATTATT
108515 C
1 C
108516 ACATGCCAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.33
Consensus pattern (21 bp):
CCAAACAACCAATTTATTATT
Found at i:110093 original size:30 final size:29
Alignment explanation
Indices: 110058--110192 Score: 134
Period size: 30 Copynumber: 4.7 Consensus size: 29
110048 TTTAACGAAC
*
110058 TTGCTCACACAAGTTGACTTTATATTAAAA
1 TTGCTCACACAAGCTGACTTTATA-TAAAA
* * * *
110088 TTGCTCACATAAGTTGACTTTGTA-ATAA
1 TTGCTCACACAAGCTGACTTTATATAAAA
*
110116 TTGCTCACACAAGCTAACTTTATAATAAAA
1 TTGCTCACACAAGCTGACTTTAT-ATAAAA
* * * *
110146 TTGTTCACACATGCTGAC-TT-TGTGAAA
1 TTGCTCACACAAGCTGACTTTATATAAAA
110173 -TGCTCACACAAGCTGACTTT
1 TTGCTCACACAAGCTGACTTT
110193 GTAATACTTC
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
26 15 0.17
27 6 0.07
28 23 0.26
29 3 0.03
30 40 0.46
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (29 bp):
TTGCTCACACAAGCTGACTTTATATAAAA
Found at i:110096 original size:28 final size:27
Alignment explanation
Indices: 110065--110154 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 27
110055 AACTTGCTCA
110065 CACAAGTTGACTTTATATTAAAATTGCT
1 CACAAGTTGACTTTATA-TAAAATTGCT
* *
110093 CACATAAGTTGACTTTGTA-ATAATTGCT
1 CAC--AAGTTGACTTTATATAAAATTGCT
* * *
110121 CACACAAGCTAACTTTATAATAAAATTGTT
1 --CACAAGTTGACTTTAT-ATAAAATTGCT
110151 CACA
1 CACA
110155 CATGCTGACT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
28 25 0.51
29 1 0.02
30 23 0.47
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (27 bp):
CACAAGTTGACTTTATATAAAATTGCT
Found at i:110136 original size:58 final size:57
Alignment explanation
Indices: 110058--110198 Score: 185
Period size: 58 Copynumber: 2.5 Consensus size: 57
110048 TTTAACGAAC
* * * *
110058 TTGCTCACACAAGTTGACTTTATATTAAAATTGCTCACATAAGTTGACTTTGTAATAA
1 TTGCTCACACAAGCTGACTTTATAATAAAATTGCTCACACAAGCTGACTTTGTAA-AA
* * * *
110116 TTGCTCACACAAGCTAACTTTATAATAAAATTGTTCACACATGCTGACTTTGTGAAA
1 TTGCTCACACAAGCTGACTTTATAATAAAATTGCTCACACAAGCTGACTTTGTAAAA
*
110173 -TGCTCACACAAGCTGACTTTGTAATA
1 TTGCTCACACAAGCTGACTTTATAATA
110199 CTTCCATACA
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 24 0.33
57 2 0.03
58 47 0.64
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (57 bp):
TTGCTCACACAAGCTGACTTTATAATAAAATTGCTCACACAAGCTGACTTTGTAAAA
Found at i:111671 original size:12 final size:13
Alignment explanation
Indices: 111648--111677 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
111638 AATATTATGT
111648 AATATATAATATA
1 AATATATAATATA
111661 AATATAT-ATATA
1 AATATATAATATA
111673 AATAT
1 AATAT
111678 CAAGTAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATATATAATATA
Found at i:112917 original size:28 final size:28
Alignment explanation
Indices: 112885--112952 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
112875 AAATTTTGGG
* * *
112885 TTTGGGCTTTGTGGGTTAGAAGATAGGT
1 TTTGGGCTTAGGGGGTTAGAAAATAGGT
*
112913 TTTGGG-TTAGGGGGTTAGAAAATTGGT
1 TTTGGGCTTAGGGGGTTAGAAAATAGGT
112940 TTTGGGC-TAGGGG
1 TTTGGGCTTAGGGG
112953 CCAAACGGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 29 0.83
28 6 0.17
ACGTcount: A:0.18, C:0.03, G:0.43, T:0.37
Consensus pattern (28 bp):
TTTGGGCTTAGGGGGTTAGAAAATAGGT
Found at i:113811 original size:14 final size:14
Alignment explanation
Indices: 113792--113820 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
113782 GTTCTTTTGA
113792 GTGTCTTGTGATGT
1 GTGTCTTGTGATGT
113806 GTGTCTTGTGATGT
1 GTGTCTTGTGATGT
113820 G
1 G
113821 AAGTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.38, T:0.48
Consensus pattern (14 bp):
GTGTCTTGTGATGT
Found at i:115220 original size:10 final size:10
Alignment explanation
Indices: 115196--115238 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
115186 ACCCGTATTA
*
115196 ATTTTTTAAT
1 ATTTTTAAAT
*
115206 TTTTTTAAAT
1 ATTTTTAAAT
*
115216 ATTTTTATAT
1 ATTTTTAAAT
115226 AATTTTTAAAT
1 -ATTTTTAAAT
115237 AT
1 AT
115239 ATATAATACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTAAAT
Found at i:115559 original size:21 final size:22
Alignment explanation
Indices: 115519--115566 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
115509 CATGTCTATA
*
115519 TTTTTACTCAAACCCTTCAATT
1 TTTTTACTCAAACCCTTCAAAT
115541 TTTTTACTCAAACCC-TCAAAT
1 TTTTTACTCAAACCCTTCAAAT
115562 TTTTT
1 TTTTT
115567 CGAGCTGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTTACTCAAACCCTTCAAAT
Found at i:120362 original size:16 final size:16
Alignment explanation
Indices: 120343--120374 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
120333 AAGAATCATA
*
120343 CTTTAAAAAATCTTTT
1 CTTTAAAAAACCTTTT
120359 CTTTAAAAAACCTTTT
1 CTTTAAAAAACCTTTT
120375 GGTATAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (16 bp):
CTTTAAAAAACCTTTT
Found at i:122537 original size:55 final size:56
Alignment explanation
Indices: 122439--122547 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 56
122429 AATATTTATA
* * * *
122439 ATAAATTAAATACAATTATAATATACAAATCCTAGATGCCTTGAATCCTTTAGGAC
1 ATAAATTAAACACAAATATAATATACAAAACCTAGATGCCTTGAATACTTTAGGAC
* *
122495 ATAAATTAAACACAAATATAAT-TACAAAACTTTGATGCCTTGAATACTTTAGG
1 ATAAATTAAACACAAATATAATATACAAAACCTAGATGCCTTGAATACTTTAGG
122548 GGTCTTCAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 27 0.57
56 20 0.43
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (56 bp):
ATAAATTAAACACAAATATAATATACAAAACCTAGATGCCTTGAATACTTTAGGAC
Found at i:127370 original size:30 final size:30
Alignment explanation
Indices: 127334--127395 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
127324 GTTTGAAAAA
127334 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
127364 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
127394 CA
1 CA
127396 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:127714 original size:77 final size:77
Alignment explanation
Indices: 127546--127758 Score: 266
Period size: 79 Copynumber: 2.7 Consensus size: 77
127536 GTGACCCGAG
* * * * *
127546 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCTCA
* * * *
127611 GTGTGTGATCTGAA
64 GCGCGTGAGCTCAA
*
127625 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
127690 GCGTGAGC-CAA
66 GCGTGAGCTCAA
* * *
127701 GGGTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGGCAGAAATTGAAAA
1 -GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAA
127759 ACGAAAATTG
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
76 2 0.02
77 46 0.39
78 24 0.20
79 47 0.39
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (77 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
GCGTGAGCTCAA
Found at i:127802 original size:169 final size:165
Alignment explanation
Indices: 127600--128071 Score: 453
Period size: 152 Copynumber: 2.9 Consensus size: 165
127590 ATAAATTGAA
* * * *
127600 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
127665 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGGTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCATG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
* **
127729 TGATTTTTTTTTAAAGGCAGAAATTGAAAAACGAAAATTG
127 TGA-TTTTTTTGAAAAACAGAAATTGAAAAACGAAAATTG
* * * *
127769 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
127834 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCATGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
127899 TTTTTTGAAAAAC------------A-G-AAATTG
131 TTTTTTGAAAAACAGAAATTGAAAAACGAAAATTG
* * * ** *
127920 AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTG
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGA--TTTTTTTG
* * * * * **
127983 AAAAACAGAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTT
64 -AAAACAGAAATTGAAAATACCTCAGCATGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
*
128048 GA--ATTTTG-AAAACAGAAATTGAAA
128 GATTTTTTTGAAAAACAGAAATTGAAA
128072 TTACCTCAGC
Statistics
Matches: 256, Mismatches: 32, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
149 36 0.14
150 5 0.02
151 29 0.11
152 60 0.23
153 1 0.00
165 13 0.05
166 35 0.14
168 19 0.07
169 58 0.23
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (165 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCATGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAAACAGAAATTGAAAAACGAAAATTG
Found at i:127823 original size:248 final size:247
Alignment explanation
Indices: 127165--128000 Score: 904
Period size: 248 Copynumber: 3.4 Consensus size: 247
127155 AACAGACATT
*
127165 AAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * *
127230 TTGATTTTTTTG-AAACTTAACTT-AAAAA-GCAGATTTTGAAAATACCTCGATATGTGA-CTGA
66 TTGATTTTTTTGAAAACAGAAATTGAAAAACG-AGATTTTGAAAATACCTCGACATGTGACCTG-
* * * *
127291 AGGTTCAACTCACCTCTCACAATATGAGTTGA--TGTTTGAAAAACAGAAATT-AAAAGACTCAA
129 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA-AAT-AC
* * * *
127353 CTCAACTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
192 CTC-AGTAT-G-TG--ATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
* * *
127416 AAAAAAAACAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGTAATAT
1 ---AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
127481 GAGTTGA--TTTTTGAAAACAG-AATCTGAAAAAC-AGATTTTGAAAATACCTCGACCTGTGACC
63 GAGTTGATTTTTTTGAAAACAGAAAT-TGAAAAACGAGATTTTGAAAATACCTCGACATGTGACC
* * * * * *
127542 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
127 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATAC
*
127607 CTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
192 CTCAGTATGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * *
127663 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGGTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * *
127728 TTGATTTTTTTTTAAAGGCAGAAATTGAAAAACGA-AAATTGAAAATACCTCGGCGTGTGACCTG
66 TTGA-TTTTTTTGAAA-ACAGAAATTGAAAAACGAGATTTTGAAAATACCTCGACATGTGACCTG
* * * *
127792 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG--AAATTACCT
129 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCT
* * *
127854 CAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
194 CAGTATGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * ** ** *
127906 AAAAACAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
127968 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAA
65 GTTGA--TTTTTTTG-AAAACAGAAATTGAAAA
128001 TACCTCAGCT
Statistics
Matches: 503, Mismatches: 61, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
240 1 0.00
241 30 0.06
242 21 0.04
243 70 0.14
244 63 0.13
245 14 0.03
247 27 0.05
248 101 0.20
249 6 0.01
250 1 0.00
251 1 0.00
252 9 0.02
253 61 0.12
254 76 0.15
255 18 0.04
256 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (247 bp):
AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAGAAATTGAAAAACGAGATTTTGAAAATACCTCGACATGTGACCTGAG
GCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAAATACCTCA
GTATGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:128015 original size:77 final size:75
Alignment explanation
Indices: 127752--128104 Score: 455
Period size: 77 Copynumber: 4.7 Consensus size: 75
127742 AAGGCAGAAA
* * * ***
127752 TTGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATA
*
127816 CGAGTTGATTTTT
63 TGAGTTGATTTTT
* * * ** *
127829 TTG-ACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
127893 GTTGATTTTT
66 GTTGATTTTT
127903 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
127968 GTTGATTTTTTT
66 GTTGA--TTTTT
* * *
127980 TTGAAAAACAGAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
128045 GTTGA--ATT
66 GTTGATTTTT
* *
128053 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
128105 TGAACAGAAA
Statistics
Matches: 252, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 46 0.18
73 5 0.02
74 41 0.16
75 60 0.24
76 24 0.10
77 76 0.30
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTT
Found at i:128078 original size:149 final size:148
Alignment explanation
Indices: 127752--128104 Score: 478
Period size: 149 Copynumber: 2.4 Consensus size: 148
127742 AAGGCAGAAA
* * ***
127752 TTGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATA
* * *
127816 CGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
63 CGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
*
127881 CTCGCAATATGAGTTGATTTTT
128 CTCGCAATATGAGTTGA-TATT
* *
127903 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* * **
127968 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTAATTT
66 GTTGA--TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
128033 CTCGCAATATGAGTTGA-ATT
128 CTCGCAATATGAGTTGATATT
*
128053 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
128105 TGAACAGAAA
Statistics
Matches: 181, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
149 78 0.43
150 5 0.03
151 38 0.21
152 60 0.33
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGATATT
Found at i:128124 original size:49 final size:49
Alignment explanation
Indices: 128058--128153 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
128048 GAATTTTGAA
*
128058 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
128107 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
128154 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:128139 original size:121 final size:121
Alignment explanation
Indices: 127986--128225 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
127976 TTTTTTGAAA
* *
127986 AACAGAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
128051 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* *
128107 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
128172 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
128226 CTCGCAATAT
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:128243 original size:193 final size:197
Alignment explanation
Indices: 127909--128280 Score: 563
Period size: 198 Copynumber: 1.9 Consensus size: 197
127899 TTTTTTGAAA
*
127909 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA-
* * *
127974 TTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCTTGTCTTGAGGCTCAACTAATTTCTCGCA
65 --TATTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCA
*
128039 ATATGAGTTGAA-TTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
128 ATATGAGTTGAATTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
128102 TTTTG
193 TTTTG
* * *
128107 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
* *
128171 ATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 ATTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCAATA
128235 TGAGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
131 TGAGTTGAA----TTTTTGAAAGACAGAAATTGAAAATACCTCAGC
128281 ATTTGAACCG
Statistics
Matches: 158, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
193 63 0.40
194 5 0.03
198 68 0.43
199 22 0.14
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (197 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
ATTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTAATTTCTCGCAATA
TGAGTTGAATTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
TG
Found at i:128363 original size:77 final size:77
Alignment explanation
Indices: 128138--128788 Score: 1064
Period size: 77 Copynumber: 8.5 Consensus size: 77
128128 AACGTGTCTT
** * *
128138 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
** * *
128200 A--ACGTG-TCTT
66 AGCATTTGAAC-C
**
128210 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTTTTGAAAGACAGAAATTGAAAATAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTTTGAAAGACAGAAATTGAAAATAC
128275 CTCAGCATTTGAACC
63 CTCAGCATTTGAACC
* *** *
128290 GAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGAAAAAGTAGAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG-ACAGAAATTGAAAATACCT
128354 CAGCATTTGAACC
65 CAGCATTTGAACC
128367 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
128432 AGCATTTGAACC
66 AGCATTTGAACC
128444 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
128509 AGCATTTGAACC
66 AGCATTTGAACC
128521 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
128586 AGCATTTGAACC
66 AGCATTTGAACC
128598 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
128663 AGCATTTGAACC
66 AGCATTTGAACC
128675 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
128740 AGCATTTGAACC
66 AGCATTTGAACC
*
128752 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
128789 GAAAAAGTAA
Statistics
Matches: 549, Mismatches: 19, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
72 32 0.06
73 1 0.00
76 8 0.01
77 446 0.81
78 28 0.05
79 1 0.00
80 32 0.06
81 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (77 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTC
AGCATTTGAACC
Found at i:128857 original size:54 final size:55
Alignment explanation
Indices: 128757--128862 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
128747 GAACCGAGGC
* *
128757 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAAAAATTGAAAAGGT
* * *
128811 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAAAAATTGAAAA
128863 CAAAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAAAAATTGAAAAGGT
Found at i:128869 original size:13 final size:13
Alignment explanation
Indices: 128842--128875 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
128832 GAGTTGATTC
*
128842 TTGAACAACATAAA
1 TTGAA-AACAAAAA
128856 TTGAAAACAAAAA
1 TTGAAAACAAAAA
128869 TTGAAAA
1 TTGAAAA
128876 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.21
Consensus pattern (13 bp):
TTGAAAACAAAAA
Found at i:128913 original size:140 final size:140
Alignment explanation
Indices: 128713--129200 Score: 861
Period size: 140 Copynumber: 3.5 Consensus size: 140
128703 GTTGATTTTT
* *
128713 TTGAAAGACAGAAATTGAAAATACCTCAGCATTTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAAAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
128777 TGAGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
128842 TTGAACAACATAAA
127 TTGAACAACGTAAA
128856 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
128921 CTGATTTTGAAAAAGTAGAAATTATAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
128986 ACAACGTAAA
131 ACAACGTAAA
* *
128996 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
129061 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
129126 ACAACGTAAA
131 ACAACGTAAA
129136 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
129201 TTGAAATTAA
Statistics
Matches: 331, Mismatches: 13, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
139 3 0.01
140 300 0.91
142 22 0.07
143 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (140 bp):
TTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:129137 original size:54 final size:54
Alignment explanation
Indices: 129037--129142 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
129027 GACCTGAGGC
*
129037 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGT-AAAATTGAAAAGGT
* *
129091 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
129143 CAAAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:129222 original size:72 final size:71
Alignment explanation
Indices: 129133--129298 Score: 253
Period size: 72 Copynumber: 2.3 Consensus size: 71
129123 TGAACAACGT
* * *
129133 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
129198 GAGTTG
66 GAGTTG
*
129204 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
129269 TGAGTTG
65 TGAGTTG
**
129276 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
129299 GGCTTAACTC
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 12 0.14
72 71 0.82
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:129393 original size:122 final size:124
Alignment explanation
Indices: 129173--129419 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
129163 GCGTGACCTG
* * *
129173 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAACG
129238 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
129298 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAACG
* *
129360 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
129419 A
1 A
129420 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAACG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:129441 original size:71 final size:70
Alignment explanation
Indices: 129298--129472 Score: 237
Period size: 71 Copynumber: 2.5 Consensus size: 70
129288 AAAAATTAAA
* * * * *
129298 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAACGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
129362 CCCCG
66 CCCCG
*
129367 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
129432 GTCTTG
65 GCCCCG
129438 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
129473 CCCTTGAAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 62 0.66
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Done.