Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold3365.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 137654
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Warning! 1364 characters in sequence are not A, C, G, or T
Found at i:4430 original size:17 final size:16
Alignment explanation
Indices: 4412--4452 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
4402 TAAATTAATA
4412 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
*
4428 AAATAAATAATAAAACT
1 AAATAAA-AATAAAAAT
4445 AAATAAAA
1 AAATAAAA
4453 TAATATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:4432 original size:21 final size:20
Alignment explanation
Indices: 4403--4455 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 20
4393 AGCCTATTCT
*
4403 AAATTAATAAAATAAAAATAA
1 AAATAAATAAAAT-AAAATAA
4424 AAATAAAT-AAAT--AATAA
1 AAATAAATAAAATAAAATAA
*
4441 AACTAAATAAAATAA
1 AAATAAATAAAATAA
4456 TATCTTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 12 0.44
18 4 0.15
20 4 0.15
21 7 0.26
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AAATAAATAAAATAAAATAA
Found at i:4457 original size:21 final size:22
Alignment explanation
Indices: 4408--4457 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
4398 ATTCTAAATT
4408 AATAA-AATAAAAATAAAAATA
1 AATAATAATAAAAATAAAAATA
* *
4429 AATAAATAATAAAACTAAATA-A
1 AAT-AATAATAAAAATAAAAATA
4451 AATAATA
1 AATAATA
4458 TCTTCTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 7 0.28
22 6 0.24
23 12 0.48
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (22 bp):
AATAATAATAAAAATAAAAATA
Found at i:14587 original size:17 final size:16
Alignment explanation
Indices: 14569--14609 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
14559 TAAATTAATA
14569 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
*
14585 AAATAAATAATAAAACT
1 AAATAAA-AATAAAAAT
14602 AAATAAAA
1 AAATAAAA
14610 TAATATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:14589 original size:21 final size:20
Alignment explanation
Indices: 14560--14612 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 20
14550 AGCCTATTCT
*
14560 AAATTAATAAAATAAAAATAA
1 AAATAAATAAAAT-AAAATAA
14581 AAATAAAT-AAAT--AATAA
1 AAATAAATAAAATAAAATAA
*
14598 AACTAAATAAAATAA
1 AAATAAATAAAATAA
14613 TATCTTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 12 0.44
18 4 0.15
20 4 0.15
21 7 0.26
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AAATAAATAAAATAAAATAA
Found at i:14614 original size:21 final size:22
Alignment explanation
Indices: 14565--14614 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
14555 ATTCTAAATT
14565 AATAA-AATAAAAATAAAAATA
1 AATAATAATAAAAATAAAAATA
* *
14586 AATAAATAATAAAACTAAATA-A
1 AAT-AATAATAAAAATAAAAATA
14608 AATAATA
1 AATAATA
14615 TCTTCTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 7 0.28
22 6 0.24
23 12 0.48
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (22 bp):
AATAATAATAAAAATAAAAATA
Found at i:22438 original size:8 final size:8
Alignment explanation
Indices: 22425--22467 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
22415 CTGCACAATT
22425 TGTGTAAA
1 TGTGTAAA
22433 TGTGTAAA
1 TGTGTAAA
22441 TGTGTAAA
1 TGTGTAAA
22449 TGTGTAAA
1 TGTGTAAA
22457 TGTGTAAA
1 TGTGTAAA
22465 TGT
1 TGT
22468 TGAGGTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.40
Consensus pattern (8 bp):
TGTGTAAA
Found at i:23301 original size:35 final size:35
Alignment explanation
Indices: 23239--23329 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
23229 TCATATGGAA
*
23239 ATATAATCTT-CAATGATATGCAATCTTAGATATG
1 ATATAATCTTAGAATGATATGCAATCTTAGATATG
23273 ATATAATCTTAGATATGAT-TGCAATCTTAGATATG
1 ATATAATCTTAGA-ATGATATGCAATCTTAGATATG
23308 ATATGCAATCTTAGAA-GATATG
1 ATAT--AATCTTAGAATGATATG
23330 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.20
35 24 0.47
36 8 0.16
37 9 0.18
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATATAATCTTAGAATGATATGCAATCTTAGATATG
Found at i:23329 original size:17 final size:19
Alignment explanation
Indices: 23251--23322 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
23241 ATAATCTTCA
23251 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23270 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
23287 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23305 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
23323 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.30
18 15 0.30
19 19 0.38
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:29206 original size:47 final size:47
Alignment explanation
Indices: 29137--29299 Score: 183
Period size: 47 Copynumber: 3.5 Consensus size: 47
29127 GCCCATAAGT
29137 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
* * * * * * *
29184 GAACTCGAACTTAACTCAACGAG-TTCGA--AC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT-C-TCA-C
29230 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
*
29277 GAACTCGGACTTAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
29300 TTCGAACATT
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 25 0.27
47 47 0.51
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
Found at i:29244 original size:93 final size:93
Alignment explanation
Indices: 29129--29347 Score: 420
Period size: 93 Copynumber: 2.4 Consensus size: 93
29119 TGTAACCCGC
29129 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAACTCGAAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAACTCGAAC
29194 TTAACTCAACGAGTTCGAACATTCGCAT
66 TTAACTCAACGAGTTCGAACATTCGCAT
*
29222 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAACTCGAAC
29287 TTAACTCAACGAGTTCGAACATTCGCAT
66 TTAACTCAACGAGTTCGAACATTCGCAT
*
29315 CCATAAGTGAACTCGGACTCAACTCAACAAGCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCT
29348 CGGGTGCCCA
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 124 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCACGAACTCGAAC
TTAACTCAACGAGTTCGAACATTCGCAT
Found at i:29246 original size:46 final size:46
Alignment explanation
Indices: 29184--29342 Score: 173
Period size: 46 Copynumber: 3.4 Consensus size: 46
29174 TACATCTCAC
* *
29184 GAACTCGAACTTAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
* * * * *
29230 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAG-TTCGA--AC-A-TTCGCATCCATAAGT
*
29277 GAACTCGGACTTAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
29323 GAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAAC
29343 AAGCTCGGGT
Statistics
Matches: 90, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 44 0.49
47 26 0.29
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
Found at i:33563 original size:78 final size:78
Alignment explanation
Indices: 33452--33668 Score: 310
Period size: 78 Copynumber: 2.8 Consensus size: 78
33442 CGAAGAAACA
** * * * ** * *
33452 GATTTGGCATCTCCATATTTGACAGAGAGCAGATAAAAAATATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
33517 GAAGATCCAAGAT
66 GAAGATCCAAGAT
*
33530 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
33594 AGCAGATCCAAGAT
65 AGAAGATCCAAGAT
*
33608 GATTTGGCATCTCTGTATTAGACGGGGAGCAGGTCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
33669 GTGTTTACAC
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
77 1 0.01
78 122 0.98
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GAAGATCCAAGAT
Found at i:33761 original size:45 final size:45
Alignment explanation
Indices: 33608--33837 Score: 194
Period size: 45 Copynumber: 5.1 Consensus size: 45
33598 GATCCAAGAT
** *
33608 GATTTGGCATCTCTGTATTAGACGGGGAGCAGGTCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACA
* * * * * * * * * *
33655 GATCTGACCT-TCATGTGTTTACAC-CGAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGACGGGGAGCAAATCGAAGATAACA
* * *
33700 GATTTGGTATTTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* *
33745 GATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * * * * *
33790 GATTTGGCGTCTCTGTATTAGACGGTGAGTAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
33835 GAT
1 GAT
33838 ATCGCTTTCC
Statistics
Matches: 145, Mismatches: 34, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
44 5 0.03
45 110 0.76
46 4 0.03
47 21 0.14
48 5 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
Found at i:34238 original size:35 final size:35
Alignment explanation
Indices: 34176--34266 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
34166 TCATATGGAA
*
34176 ATATAATCTT-CAATGATATGCAATCTTAGATATG
1 ATATAATCTTAGAATGATATGCAATCTTAGATATG
34210 ATATAATCTTAGATATGAT-TGCAATCTTAGATATG
1 ATATAATCTTAGA-ATGATATGCAATCTTAGATATG
34245 ATATGCAATCTTAGAA-GATATG
1 ATAT--AATCTTAGAATGATATG
34267 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.20
35 24 0.47
36 8 0.16
37 9 0.18
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATATAATCTTAGAATGATATGCAATCTTAGATATG
Found at i:34266 original size:17 final size:19
Alignment explanation
Indices: 34188--34259 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
34178 ATAATCTTCA
34188 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34207 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
34224 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34242 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
34260 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.30
18 15 0.30
19 19 0.38
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:34285 original size:22 final size:22
Alignment explanation
Indices: 34188--34282 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 22
34178 ATAATCTTCA
34188 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34207 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
34224 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34242 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
34264 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
34283 GATTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
16 1 0.02
17 13 0.21
18 13 0.21
19 16 0.25
22 8 0.13
23 12 0.19
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:34573 original size:17 final size:17
Alignment explanation
Indices: 34549--34583 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34539 TGTTTCCCTG
*
34549 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
34567 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
34584 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:36795 original size:41 final size:41
Alignment explanation
Indices: 36737--36818 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 41
36727 TCAGGCACTC
* *
36737 ATCTAATGGAAACTAACAAG-AGAGGGACTAAGATATTTAAT
1 ATCTAATGGAAAATAAC-AGTAGAGGGACTAAAATATTTAAT
**
36778 ATCTAAT-GACAAATAACAGTAGATTGACTAAAATATTTAAT
1 ATCTAATGGA-AAATAACAGTAGAGGGACTAAAATATTTAAT
36819 TTAAAAAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
40 4 0.11
41 31 0.89
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.28
Consensus pattern (41 bp):
ATCTAATGGAAAATAACAGTAGAGGGACTAAAATATTTAAT
Found at i:37679 original size:12 final size:11
Alignment explanation
Indices: 37650--37708 Score: 59
Period size: 12 Copynumber: 5.3 Consensus size: 11
37640 TTTGGCAGCA
37650 AAAAC-AAAGC
1 AAAACAAAAGC
37660 AAAACAAAAGC
1 AAAACAAAAGC
37671 AAGAACAAAATG-
1 AA-AACAAAA-GC
*
37683 AAAACAGAAGC
1 AAAACAAAAGC
*
37694 AAAAACGAAAGC
1 -AAAACAAAAGC
37706 AAA
1 AAA
37709 CTGTTTGAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
10 6 0.15
11 16 0.39
12 18 0.44
13 1 0.02
ACGTcount: A:0.69, C:0.15, G:0.14, T:0.02
Consensus pattern (11 bp):
AAAACAAAAGC
Found at i:42177 original size:12 final size:11
Alignment explanation
Indices: 42148--42195 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
42138 TTTGGCAGTA
42148 AAAAC-AAAGC
1 AAAACAAAAGC
42158 AAAACAAAAGC
1 AAAACAAAAGC
42169 AAGAACAAAATG-
1 AA-AACAAAA-GC
*
42181 AAAACAGAAGC
1 AAAACAAAAGC
42192 AAAA
1 AAAA
42196 ACGAAAGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
10 6 0.18
11 17 0.52
12 9 0.27
13 1 0.03
ACGTcount: A:0.71, C:0.15, G:0.12, T:0.02
Consensus pattern (11 bp):
AAAACAAAAGC
Found at i:42936 original size:7 final size:7
Alignment explanation
Indices: 42924--42955 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
42914 TGCTCCACTT
42924 CTAAACC
1 CTAAACC
42931 CTAAACC
1 CTAAACC
42938 CTAAACC
1 CTAAACC
42945 CTAAACC
1 CTAAACC
42952 CTAA
1 CTAA
42956 CAAAATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:47448 original size:16 final size:16
Alignment explanation
Indices: 47427--47478 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
47417 TTTGGTTCGC
47427 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
47443 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* * *
47459 TGTAATGGAATAGATG
1 TGTATTGGATTAGAGG
47475 TGTA
1 TGTA
47479 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:47525 original size:45 final size:44
Alignment explanation
Indices: 47459--47553 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
47449 GGATTAGAGG
* * *
47459 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
47504 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
47548 TGTAAT
1 TGTAAT
47554 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:47736 original size:18 final size:17
Alignment explanation
Indices: 47715--47749 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47705 TTATTATTTA
*
47715 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47733 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47750 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47743 original size:28 final size:27
Alignment explanation
Indices: 47673--47745 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
47663 TTTATTATCA
*
47673 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
47701 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
47728 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
47746 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:47883 original size:18 final size:17
Alignment explanation
Indices: 47862--47896 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47852 TTATTATTAA
*
47862 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47880 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47897 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47908 original size:147 final size:149
Alignment explanation
Indices: 47634--47908 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
47624 ATGATTATTG
*
47634 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
47699 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
47764 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
47783 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
47846 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
47909 ATAGTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:47992 original size:147 final size:143
Alignment explanation
Indices: 47674--47989 Score: 318
Period size: 147 Copynumber: 2.2 Consensus size: 143
47664 TTATTATCAA
* *
47674 AAATAAATAAT-TTAATCATATTTAAACATAATTATTATTTAATATATTTTAATTAAAATATATA
1 AAATAATTAATATTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATA
* * * ** * ** * * *
47738 ATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTTTATTTAAATTTTAA
66 ATTTAATAAAATTCTTAATAATTAACAGAAATATGATTTACTAAATCATAATATTGAAACTATAA
47803 TAAGATTATTAATAT
131 TAAGA-TA-TAATAT
* *
47818 CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATA
1 AAATAATTAAT-A-TTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATA
* ** *
47883 TAATTTAATAAAATTCTTAATAATTAATAGTCTTATATGAATTTACTCAAATCATAATATATGAT
64 TAATTTAATAAAATTCTTAATAATTAACAG--AAATATG-ATTTACT-AAATCATAATAT-TGAA
*
47948 ACTATAA-AAGA-A-AATTT
124 ACTATAATAAGATATAATAT
47965 GAAATAATTAATATTAAAT-ATATTT
1 -AAATAATTAATATT-AATCATATTT
47990 TAATTAAAAT
Statistics
Matches: 140, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
144 8 0.06
146 8 0.06
147 86 0.61
148 9 0.06
149 5 0.04
150 4 0.03
151 13 0.09
152 7 0.05
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.44
Consensus pattern (143 bp):
AAATAATTAATATTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATA
ATTTAATAAAATTCTTAATAATTAACAGAAATATGATTTACTAAATCATAATATTGAAACTATAA
TAAGATATAATAT
Found at i:48755 original size:16 final size:16
Alignment explanation
Indices: 48734--48769 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
48724 TAAGAAATCA
48734 CAGCCATGTACTCCTG
1 CAGCCATGTACTCCTG
48750 CAGCCATGTACTCCTG
1 CAGCCATGTACTCCTG
48766 CAGC
1 CAGC
48770 TCCTGAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.22
Consensus pattern (16 bp):
CAGCCATGTACTCCTG
Found at i:53547 original size:75 final size:76
Alignment explanation
Indices: 53424--53572 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 76
53414 GGAGCAAGTG
53424 TTCACAGCAACTTGTTTTGTTGGCACAACCAAGGCCAGAAATGATTGGCTACTAGACAGTGGCTG
1 TTCACAGCAACTTGTTTTGTTGGCACAACCAAGGCCAGAAATGATTGGCTACTAGACAGTGGCTG
53489 CTCA-ACCAAT
66 CTCACACCAAT
*
53499 TTCACAGCAACTTGTTTTGTTGGCACAACCAAGGCCAGCAATGATTGGCTACTAGACAGTGGCTG
1 TTCACAGCAACTTGTTTTGTTGGCACAACCAAGGCCAGAAATGATTGGCTACTAGACAGTGGCTG
53564 CTCACACCA
66 CTCACACCA
53573 TATGGCAGCA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 68 0.94
76 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (76 bp):
TTCACAGCAACTTGTTTTGTTGGCACAACCAAGGCCAGAAATGATTGGCTACTAGACAGTGGCTG
CTCACACCAAT
Found at i:60189 original size:16 final size:16
Alignment explanation
Indices: 60165--60197 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60155 TTTCTCACCA
*
60165 GATAGAATGCATATAG
1 GATAAAATGCATATAG
60181 GATAAAATGCATATAG
1 GATAAAATGCATATAG
60197 G
1 G
60198 CATTCCAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (16 bp):
GATAAAATGCATATAG
Found at i:64000 original size:40 final size:39
Alignment explanation
Indices: 63955--64057 Score: 161
Period size: 39 Copynumber: 2.6 Consensus size: 39
63945 AAACGCCACA
63955 AAAGGTAAAGCAATAGCGGCGTTTTTTCATAAACGCTGCT
1 AAAGGTAAAGCAATAGCGGCGTTTTTT-ATAAACGCTGCT
* * **
63995 AAAGGTAAAACAATGGCGGTATTTTTTATAAACGCTGCT
1 AAAGGTAAAGCAATAGCGGCGTTTTTTATAAACGCTGCT
64034 AAAGGTAAAGCAATAGCGGCGTTT
1 AAAGGTAAAGCAATAGCGGCGTTT
64058 ATGAGAAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 32 0.58
40 23 0.42
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (39 bp):
AAAGGTAAAGCAATAGCGGCGTTTTTTATAAACGCTGCT
Found at i:64162 original size:19 final size:20
Alignment explanation
Indices: 64131--64182 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 20
64121 CCTAAATTAG
64131 TTTCCCGAAATCCCTTA-TTT
1 TTTCCC-AAATCCCTTAGTTT
64151 TTTCCCAAATCCCTTAGTTT
1 TTTCCCAAATCCCTTAGTTT
64171 TTTCCCCAAATC
1 TTT-CCCAAATC
64183 AAATTCCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.33
20 12 0.40
21 8 0.27
ACGTcount: A:0.21, C:0.33, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTCCCAAATCCCTTAGTTT
Found at i:64211 original size:20 final size:19
Alignment explanation
Indices: 64131--64211 Score: 55
Period size: 19 Copynumber: 4.4 Consensus size: 19
64121 CCTAAATTAG
* *
64131 TTTCCCGAAATCCCTTATT
1 TTTCCCCAAATCCCTTAAT
* *
64150 TTTTCCCAAATCCCTTAGTTT
1 TTTCCCCAAATCCCTTA--AT
64171 TTTCCCCAAAT--C--AA-
1 TTTCCCCAAATCCCTTAAT
*
64185 ATTCCCCAAATCCCTTAGAT
1 TTTCCCCAAATCCCTTA-AT
64205 TTTCCCC
1 TTTCCCC
64212 GAATGTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 15
0.70 0.09 0.22
Matches are distributed among these distances:
14 10 0.21
16 1 0.02
17 1 0.02
18 1 0.02
19 17 0.35
20 6 0.12
21 12 0.25
ACGTcount: A:0.23, C:0.35, G:0.04, T:0.38
Consensus pattern (19 bp):
TTTCCCCAAATCCCTTAAT
Found at i:64251 original size:25 final size:25
Alignment explanation
Indices: 64217--64278 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
64207 TCCCCGAATG
*
64217 TCTGCTGCATTGCCGTCGACAGTCC
1 TCTGCTGCATCGCCGTCGACAGTCC
* *
64242 TCTGCTGCATCGCTGTCGACCGTCC
1 TCTGCTGCATCGCCGTCGACAGTCC
**
64267 TCTATTGCATCG
1 TCTGCTGCATCG
64279 TCATGTAAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.11, C:0.35, G:0.23, T:0.31
Consensus pattern (25 bp):
TCTGCTGCATCGCCGTCGACAGTCC
Found at i:66411 original size:19 final size:19
Alignment explanation
Indices: 66389--66479 Score: 62
Period size: 20 Copynumber: 4.6 Consensus size: 19
66379 ATTCTATGAA
66389 TAATTAATAAATTTTCGAT
1 TAATTAATAAATTTTCGAT
**
66408 TAATTAAATAAATAATC-A-
1 TAATT-AATAAATTTTCGAT
* * *
66426 TATTTCATAATAATTCTAT-GAA
1 TAATTAAT-A-AATT-T-TCGAT
66448 TAATTAATAAATTTTCGAT
1 TAATTAATAAATTTTCGAT
66467 TAATTAAATAAAT
1 TAATT-AATAAAT
66480 AATCATATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 17
0.68 0.11 0.21
Matches are distributed among these distances:
17 2 0.04
18 6 0.11
19 17 0.31
20 20 0.37
21 3 0.06
22 6 0.11
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (19 bp):
TAATTAATAAATTTTCGAT
Found at i:66422 original size:59 final size:59
Alignment explanation
Indices: 66334--66925 Score: 874
Period size: 59 Copynumber: 10.1 Consensus size: 59
66324 AATATATATG
* * *
66334 TAATTGATTTTCAATTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* *
66393 TAATAAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* *
66452 TAATAAATTTTCGATTAATTAAATAAATAATCATATTTTATAATAATTTTATGAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* * * *
66511 TAATAAAATTTT-GATTAATTAAATAAATAATCATATTCCATAATAAATTTAAGAATAAT
1 TAAT-TAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* * * * *
66570 TAGTTAACTTCCAATTAATAAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* *
66629 TAATAAAAATTT-GATTAATTAAATAAATAATCATATTTCATAATAATTTTA-GAATAAT
1 TAAT-TAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
*
66687 TAATTAA-TTTCTGATTAATTAAATAAATAATCATATTTCATAATAATTTTAGGAATAAT
1 TAATTAATTTTC-GATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
*
66746 T-ATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTTTA-GAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
* *
66803 TAATTAA-TTTCTGATTAATTAAATAAATAATCAGATTTCATAATAATTCTATGAATAAT
1 TAATTAATTTTC-GATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
** *
66862 TAATTAATTTTTTATTAATTAAATAAATAATCATATTTCATAATAATTCTATGAATAAT
1 TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
66921 TAATT
1 TAATT
66926 NNNNNNNNNN
Statistics
Matches: 490, Mismatches: 32, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
56 3 0.01
57 13 0.03
58 140 0.29
59 320 0.65
60 14 0.03
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (59 bp):
TAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAAT
Found at i:66538 original size:19 final size:19
Alignment explanation
Indices: 66389--66538 Score: 69
Period size: 19 Copynumber: 7.7 Consensus size: 19
66379 ATTCTATGAA
66389 TAATT-AATAAATTTTCGAT
1 TAATTAAATAAATTTT-GAT
** *
66408 TAATTAAATAAATAATCA-
1 TAATTAAATAAATTTTGAT
* *
66426 TATTTCATAAT-AATTCTATGAA
1 TAATT-A-AATAAATT-T-TGAT
66448 TAATT-AATAAATTTTCGAT
1 TAATTAAATAAATTTT-GAT
** *
66467 TAATTAAATAAATAATCA-
1 TAATTAAATAAATTTTGAT
* * *
66485 TATTTTATAATAATTTTATGAA
1 TA-ATTA-AATAAATTT-TGAT
66507 TAATT-AATAAAATTTTGAT
1 TAATTAAAT-AAATTTTGAT
66526 TAATTAAATAAAT
1 TAATTAAATAAAT
66539 AATCATATTC
Statistics
Matches: 96, Mismatches: 20, Indels: 30
0.66 0.14 0.21
Matches are distributed among these distances:
18 7 0.07
19 40 0.42
20 37 0.39
21 6 0.06
22 6 0.06
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (19 bp):
TAATTAAATAAATTTTGAT
Found at i:75870 original size:6 final size:7
Alignment explanation
Indices: 75850--75881 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
75840 TAATGTACAT
75850 AATAAAA
1 AATAAAA
75857 AATAAAA
1 AATAAAA
75864 AATAAAA
1 AATAAAA
75871 AATAAAA
1 AATAAAA
75878 AATA
1 AATA
75882 TATATTTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:76301 original size:42 final size:42
Alignment explanation
Indices: 76190--76309 Score: 134
Period size: 42 Copynumber: 2.9 Consensus size: 42
76180 ATATTAAGGG
* * * * *
76190 ATAATTAATACTAATAATAATA-ATAGTAAAATACTAATAATA
1 ATAA-TAATAATAATAATAGTAGAAAATAAAATAATAATAATA
*
76232 ATAATGATAATAATAATAGTAGAAAATAAAATAATAATAATA
1 ATAATAATAATAATAATAGTAGAAAATAAAATAATAATAATA
* * * *
76274 ATAATAATAATATTAATAGTGGTAAATATAATAATA
1 ATAATAATAATAATAATAGTAGAAAATAAAATAATA
76310 GAATACGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
41 14 0.21
42 52 0.79
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (42 bp):
ATAATAATAATAATAATAGTAGAAAATAAAATAATAATAATA
Found at i:76309 original size:3 final size:3
Alignment explanation
Indices: 76190--76291 Score: 109
Period size: 3 Copynumber: 34.0 Consensus size: 3
76180 ATATTAAGGG
* * *
76190 ATA ATTA ATA CTA ATA ATA ATA ATA GTA A-A ATA CTA ATA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
76235 ATG ATA ATA ATA ATA GTA GAAA ATA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
76280 ATA ATA TTA ATA
1 ATA ATA ATA ATA
76292 GTGGTAAATA
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
2 4 0.05
3 73 0.90
4 4 0.05
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:79329 original size:66 final size:66
Alignment explanation
Indices: 79218--79351 Score: 162
Period size: 66 Copynumber: 2.0 Consensus size: 66
79208 GCAAATTGCT
* * * * * *
79218 CAACTTAAAGTGGAGGCAGCATCAAGAGAAACAGAGGCTCAAAGAAAATATGATGAACTCCAGCT
1 CAACTTAAAGTGGAGGCAACAACAAGAGAAACAGAGGATAAAAGAAAATATGACGAACTCCAACT
79283 A
66 A
* * * *
79284 CAACTTAAAGTGGAGGCAACAACGAGGGAAGCAGA-GATAATAAGAAAATCTGACGAACTCCAAC
1 CAACTTAAAGTGGAGGCAACAACAAGAGAAACAGAGGATAA-AAGAAAATATGACGAACTCCAAC
79348 TA
65 TA
79350 CA
1 CA
79352 GTTGCAAGAT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 3 0.05
66 54 0.95
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGTGGAGGCAACAACAAGAGAAACAGAGGATAAAAGAAAATATGACGAACTCCAACT
A
Found at i:79687 original size:43 final size:43
Alignment explanation
Indices: 79621--79803 Score: 201
Period size: 43 Copynumber: 4.3 Consensus size: 43
79611 TCTGTTAATG
* *
79621 TTAGTGGCGCTTTTCCTACAAACGCCACTATAGAACGTGATCT
1 TTAGCGGCGCTTTTCCTACAAACGCCACTATAGAACATGATCT
**
79664 TTAGCGGCGCTTTTCCTACAAACGCTGCTATAGAACATGATCT
1 TTAGCGGCGCTTTTCCTACAAACGCCACTATAGAACATGATCT
** * * * *
79707 TTAGCGATGCTTCTCCAACAAACGCCGCTATAGAACATG--GT
1 TTAGCGGCGCTTTTCCTACAAACGCCACTATAGAACATGATCT
* ** * * *
79748 TTAGCGACGCTTCGCCTACAAACACTACTAAAGAACATGATCT
1 TTAGCGGCGCTTTTCCTACAAACGCCACTATAGAACATGATCT
79791 TTAGCGGCG-TTTT
1 TTAGCGGCGCTTTT
79804 GTTCTTTAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
41 33 0.28
42 2 0.02
43 82 0.70
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGCTTTTCCTACAAACGCCACTATAGAACATGATCT
Found at i:79783 original size:84 final size:85
Alignment explanation
Indices: 79629--79796 Score: 221
Period size: 84 Copynumber: 2.0 Consensus size: 85
79619 TGTTAGTGGC
* * * * ** * *
79629 GCTTTTCCTACAAACGCCACTATAGAACGTGATCTTTAGCGGCGCTTTTCCTACAAACGCTGCTA
1 GCTTCTCCAACAAACGCCACTATAGAACATGA-CTTTAGCGACGCTTCGCCTACAAACACTACTA
*
79694 TAGAACATGATCTTTAGCGAT
65 AAGAACATGATCTTTAGCGAT
* *
79715 GCTTCTCCAACAAACGCCGCTATAGAACATG-GTTTAGCGACGCTTCGCCTACAAACACTACTAA
1 GCTTCTCCAACAAACGCCACTATAGAACATGACTTTAGCGACGCTTCGCCTACAAACACTACTAA
79779 AGAACATGATCTTTAGCG
66 AGAACATGATCTTTAGCG
79797 GCGTTTTGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 44 0.62
86 27 0.38
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (85 bp):
GCTTCTCCAACAAACGCCACTATAGAACATGACTTTAGCGACGCTTCGCCTACAAACACTACTAA
AGAACATGATCTTTAGCGAT
Found at i:80822 original size:22 final size:22
Alignment explanation
Indices: 80788--80839 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
80778 AAAAGCAATG
80788 CAAATAAAATCC-AACA-AAAC
1 CAAATAAAATCCAAACATAAAC
*
80808 CAAATATATAATCCAAACATAAAT
1 CAAATA-A-AATCCAAACATAAAC
80832 CAAATAAA
1 CAAATAAA
80840 TAGTAATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 6 0.22
21 1 0.04
22 6 0.22
23 5 0.19
24 9 0.33
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.17
Consensus pattern (22 bp):
CAAATAAAATCCAAACATAAAC
Found at i:84209 original size:228 final size:228
Alignment explanation
Indices: 83812--84499 Score: 1223
Period size: 228 Copynumber: 3.0 Consensus size: 228
83802 AGATTAAGAA
* * * *
83812 CTCTTAAACCTTTAGACCCACCTATGCTGCTTGGGAGGCTCACAAGGTTATTGCAATCTTTCAGA
1 CTCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGGCTCACAAGGTTTTTGCAATCTTTCAGA
* *
83877 TTTAATATTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTAGCAGCCTCC
66 TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCC
83942 TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATCTGGTAC
131 TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATCTGGTAC
84007 ATCCTTCCAAAATCAAAACTTCAAGATTTGGAG
196 ATCCTTCCAAAATCAAAACTTCAAGATTTGGAG
* *
84040 CTCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGACTCACAAGGTTTTTGAAATCTTTCAGA
1 CTCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGGCTCACAAGGTTTTTGCAATCTTTCAGA
84105 TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCC
66 TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCC
* *
84170 TAAGTTCAAAAGTTTAAGTCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATTTGGTAC
131 TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATCTGGTAC
*
84235 ATCCTTCCAAAAACAAAACTTCAAGATTTGGAG
196 ATCCTTCCAAAATCAAAACTTCAAGATTTGGAG
*
84268 CCCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGGCTCACAAGGTTTTTGCAATCTTTCAGA
1 CTCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGGCTCACAAGGTTTTTGCAATCTTTCAGA
*
84333 TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCT
66 TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCC
*
84398 TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTTTTAATCTGGTAC
131 TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATCTGGTAC
* **
84463 ACCCTTTTAAAATCAAAACTTCAAGATTTGGAG
196 ATCCTTCCAAAATCAAAACTTCAAGATTTGGAG
84496 CTCT
1 CTCT
84500 AGTAAAGTCT
Statistics
Matches: 437, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
228 437 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (228 bp):
CTCTTAAACCTTTACACCCACCTTTGCTGCTTGCGAGGCTCACAAGGTTTTTGCAATCTTTCAGA
TTTAATGTTTCAAGAGATTCCCATTCAATTTTGGTTGGAAGACTCCTAAGATTTTTGCAGCCTCC
TAAGTTCAAAAGTTTAAGCCTCGTAAGAACTCCTATGGATGGATGAACATCTATTAATCTGGTAC
ATCCTTCCAAAATCAAAACTTCAAGATTTGGAG
Found at i:85105 original size:43 final size:43
Alignment explanation
Indices: 84968--85351 Score: 347
Period size: 43 Copynumber: 8.9 Consensus size: 43
84958 TATTTGAAAA
* * ** * *
84968 AAACGCCGCTATAGAACATGACTTTTAGCGGCATTTTTTCTAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * * *
85011 AAACACCACTATAGAATGTGACCTTTAGTC-GCGCTTTTACAAC
1 AAACGCCGCTATAGAACGTGACCTTTAG-CGGCGCTTTTCCAAC
* * * * **
85054 AAATGCCGCTATAGAACGTGACCTTTAACGGTGTTTTTCCCTC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * * * *
85097 AAACGCCGCTACAGAACATTACCTTTAGTGGCACTTTTCCAAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * * * ** * *
85140 AAACGACGCTGTAAAACGTGACATTTAGCGATGCTTTGCCTAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * * * * * *
85183 AAACGACACTATAGAACATGGCCTGTAGCGGCACTTTTACAAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * * * *
85226 AAATGCTGCTATAGAACATGGCCTTTAACGGCGCTTTTCCAAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
* * *
85269 AAACGCCGCTATAGAACGTGGCCTTTAGCTGCGCTTTTCCTAC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
*
85312 AAACGCCGCTATAGAACGTGACCTTTAGCAGCGCTTTTCC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCC
85352 CGTAAACACC
Statistics
Matches: 267, Mismatches: 72, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
42 1 0.00
43 265 0.99
44 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCAAC
Found at i:85349 original size:129 final size:129
Alignment explanation
Indices: 84968--85404 Score: 392
Period size: 129 Copynumber: 3.4 Consensus size: 129
84958 TATTTGAAAA
* * * * * * *
84968 AAACGCCGCTATAGAACATGACTTTTAGCGGCATTTTTTCTACAAACACCACTATAGAATGTGAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCAACAAACGCCGCTATAGAACGTGAC
* * * * * * * **
85033 CTTTAG-TCGCGCTTTTACAACAAATGCCGCTATAGAACGTGACCTTTAACGGTGTTTTTCCCTC
66 CTTTAGCT-GCGCTTTTCCTACAAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTACAAC
* * * * * *
85097 AAACGCCGCTACAGAACATTACCTTTAGTGGCACTTTTCCAACAAACGACGCTGTAAAACGTGAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCAACAAACGCCGCTATAGAACGTGAC
* * * * * * * * *
85162 ATTTAGC-GATGCTTTGCCTACAAACGACACTATAGAACATGGCCTGTAGCGGCACTTTTACAAC
66 CTTTAGCTG-CGCTTTTCCTACAAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTACAAC
* * * * * *
85226 AAATGCTGCTATAGAACATGGCCTTTAACGGCGCTTTTCCAACAAACGCCGCTATAGAACGTGGC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCAACAAACGCCGCTATAGAACGTGAC
* * ***
85291 CTTTAGCTGCGCTTTTCCTACAAACGCCGCTATAGAACGTGACCTTTAGCAGCGCTTTTCCCGT
66 CTTTAGCTGCGCTTTTCCTACAAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTACAAC
* * * *** *
85355 AAACACCACTATAGAACTTGGTTTTTAGCGGCACTTTTCGCAAAAAACGC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTC-CAACAAACGC
85405 TACTAATTTT
Statistics
Matches: 237, Mismatches: 67, Indels: 7
0.76 0.22 0.02
Matches are distributed among these distances:
128 1 0.00
129 226 0.95
130 10 0.04
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (129 bp):
AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCAACAAACGCCGCTATAGAACGTGAC
CTTTAGCTGCGCTTTTCCTACAAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTACAAC
Found at i:85393 original size:86 final size:86
Alignment explanation
Indices: 84968--85404 Score: 369
Period size: 86 Copynumber: 5.1 Consensus size: 86
84958 TATTTGAAAA
* * ** * * *
84968 AAACGCCGCTATAGAACATGACTTTTAGCGGCATTTTTTCTACAAACACCACTATAGAA-TGTGA
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAACACCACTATAGAACT-TGG
* *
85032 CCTTTAGTC-GCGCTTTTACAAC
65 CCTTTAG-CGGCACTTTTCCAAC
* * * * * * * * *
85054 AAATGCCGCTATAGAACGTGACCTTTAACGGTGTTTTTCCCTCAAACGCCGCTACAGAACATT-A
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAACACCACTATAGAAC-TTGG
*
85118 CCTTTAGTGGCACTTTTCCAAC
65 CCTTTAGCGGCACTTTTCCAAC
* * * * ** * * *
85140 AAACGACGCTGTAAAACGTGACATTTAGCGATGCTTTGCCTACAAACGA-CACTATAGAACATGG
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAAC-ACCACTATAGAACTTGG
* *
85204 CCTGTAGCGGCACTTTTACAAC
65 CCTTTAGCGGCACTTTTCCAAC
* * * * * * * * *
85226 AAATGCTGCTATAGAACATGGCCTTTAACGGCGCTTTTCCAACAAACGCCGCTATAGAACGTGGC
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAACACCACTATAGAACTTGGC
* * *
85291 CTTTAGCTGCGCTTTTCCTAC
66 CTTTAGCGGCACTTTTCCAAC
* ** *
85312 AAACGCCGCTATAGAACGTGACCTTTAGCAGCGCTTTTCCCGTAAACACCACTATAGAACTTGGT
1 AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAACACCACTATAGAACTTGGC
* *
85377 TTTTAGCGGCACTTTTCGCAAA
66 CTTTAGCGGCACTTTTC-CAAC
85399 AAACGC
1 AAACGC
85405 TACTAATTTT
Statistics
Matches: 271, Mismatches: 73, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
85 1 0.00
86 260 0.96
87 9 0.03
88 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (86 bp):
AAACGCCGCTATAGAACGTGACCTTTAGCGGCGCTTTTCCCACAAACACCACTATAGAACTTGGC
CTTTAGCGGCACTTTTCCAAC
Found at i:85812 original size:66 final size:66
Alignment explanation
Indices: 85677--85817 Score: 151
Period size: 66 Copynumber: 2.2 Consensus size: 66
85667 TCATATTCTG
** * * * * *
85677 AAGTTGTAGCTGGAGTTCGTCGTATTTTCTACTCTACTCTGCTTCCCTCGCTGTTGCTTTTGCTC
1 AAGTTGTAGCTGGAGTTCGTCAAATTTTCTACTCAACTCTGCTTCCCTCGATGCTGCCTCTGCTC
85742 T
66 T
* * * *
85743 AAGTTGTAGCTGGAGTTCTTCAAATTTTCT-TTGAACCTCTGCTTCTCTCGATGCTGCCTCTGCT
1 AAGTTGTAGCTGGAGTTCGTCAAATTTTCTACTCAA-CTCTGCTTCCCTCGATGCTGCCTCTGCT
*
85807 TT
65 CT
85809 AAGTT-TAGC
1 AAGTTGTAGC
85818 AATTTGCTCT
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
65 6 0.10
66 56 0.90
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (66 bp):
AAGTTGTAGCTGGAGTTCGTCAAATTTTCTACTCAACTCTGCTTCCCTCGATGCTGCCTCTGCTC
T
Found at i:91667 original size:43 final size:42
Alignment explanation
Indices: 91603--91868 Score: 121
Period size: 43 Copynumber: 6.2 Consensus size: 42
91593 AAAATCAAGC
* * * * *
91603 TCTATAACAGCATTTGCGGGAAAAGCGTCGCTAAAGGCCACTT
1 TCTATAGCAGCATGTGTGGGAAAAGCG-CGCTAAAGGCAACGT
* *
91646 TTTATAGC-GACATGTGTGGGAAAAGCACCGCTAAAGGCAACGT
1 TCTATAGCAG-CATGTGTGGGAAAAGC-GCGCTAAAGGCAACGT
* * * *
91689 TCTATAGCAGCGTTTGTGGGAAAAGCGCTGCTAAA-GAACACAT
1 TCTATAGCAGCATGTGTGGGAAAAGCGC-GCTAAAGGCA-ACGT
* * * * *
91732 TCTATAGCGGCGTTTGTTGTAAAAGCGTCG-TAACAGGTC-ACGT
1 TCTATAGCAGCATGTGTGGGAAAAGCG-CGCTAA-AGG-CAACGT
* * * * * * *
91775 TCTATAACTGCGTTTGTAGGCAAAGCGCCGCTAAATGTC-ACGT
1 TCTATAGCAGCATGTGTGGGAAAAGCG-CGCTAAA-GGCAACGT
* * * * * *
91818 TCTATAGC-GTCGTTTGTTGGAAAAGCGCTACTAAAGGTAATGT
1 TCTATAGCAG-CATGTGTGGGAAAAGCGC-GCTAAAGGCAACGT
91861 TCTATAGC
1 TCTATAGC
91869 GGCGTTTGAA
Statistics
Matches: 177, Mismatches: 32, Indels: 28
0.75 0.14 0.12
Matches are distributed among these distances:
42 10 0.06
43 160 0.90
44 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TCTATAGCAGCATGTGTGGGAAAAGCGCGCTAAAGGCAACGT
Found at i:91724 original size:86 final size:86
Alignment explanation
Indices: 91579--91952 Score: 254
Period size: 86 Copynumber: 4.3 Consensus size: 86
91569 GCTTTTTTGT
** * * * *
91579 GAAAAGCGCCGCTAAAAATCAA-GCTCTATAACAGCATTTGCGGGAAAAGCG-TCGCTAAAGGCC
1 GAAAAGCGCCGCT-AAAGGCAACGTTCTATAACAGCGTTTGTGGGAAAAGCGCT-GCTAAAGGAC
* * * * *
91642 ACTTTTTATAGCGACATGTGTGG
64 ACATTCTATAGCGACGTTTGTTG
* * *
91665 GAAAAGCACCGCTAAAGGCAACGTTCTATAGCAGCGTTTGTGGGAAAAGCGCTGCTAAAGAACAC
1 GAAAAGCGCCGCTAAAGGCAACGTTCTATAACAGCGTTTGTGGGAAAAGCGCTGCTAAAGGACAC
*
91730 ATTCTATAGCGGCGTTTGTTG
66 ATTCTATAGCGACGTTTGTTG
* * * * * * * *
91751 TAAAAGCGTCG-TAACAGGTC-ACGTTCTATAACTGCGTTTGTAGGCAAAGCGCCGCTAAATGTC
1 GAAAAGCGCCGCTAA-AGG-CAACGTTCTATAACAGCGTTTGTGGGAAAAGCGCTGCTAAAGGAC
* *
91814 ACGTTCTATAGCGTCGTTTGTTG
64 ACATTCTATAGCGACGTTTGTTG
** * * * * *** ** * * *
91837 GAAAAGCGCTACTAAAGGTAATGTTCTATAGCGGCGTTTGAAAGAAAAATGCCGCTGAAGGTCA-
1 GAAAAGCGCCGCTAAAGGCAACGTTCTATAACAGCGTTTGTGGGAAAAGCGCTGCTAAAGGACAC
* * *
91901 AGTTCTATAGCGGCATTAGTTG
66 A-TTCTATAGCGACGTTTGTTG
* * * *
91923 TAAAAGCGCTGCTAAAGGTAACATTCTATA
1 GAAAAGCGCCGCTAAAGGCAACGTTCTATA
91953 GCGGTGTTCG
Statistics
Matches: 230, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
85 9 0.04
86 216 0.94
87 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (86 bp):
GAAAAGCGCCGCTAAAGGCAACGTTCTATAACAGCGTTTGTGGGAAAAGCGCTGCTAAAGGACAC
ATTCTATAGCGACGTTTGTTG
Found at i:91869 original size:43 final size:43
Alignment explanation
Indices: 91664--91956 Score: 252
Period size: 43 Copynumber: 6.8 Consensus size: 43
91654 GACATGTGTG
* * * * *
91664 GGAAAAGCACCGCTAAAGGCAACGTTCTATAGCAGCGTTTGTG
1 GGAAAAGCGCTGCTAAAGGTAACGTTCTATAGCGGCGTTTGTT
* *
91707 GGAAAAGCGCTGCTAAA-GAACACATTCTATAGCGGCGTTTGTT
1 GGAAAAGCGCTGCTAAAGGTA-ACGTTCTATAGCGGCGTTTGTT
* * * * *
91750 GTAAAAGCG-T-CGTAACAGGTCACGTTCTATAACTGCGTTTGTA
1 GGAAAAGCGCTGC-TAA-AGGTAACGTTCTATAGCGGCGTTTGTT
* * * * *
91793 GGCAAAGCGCCGCTAAATGTCACGTTCTATAGCGTCGTTTGTT
1 GGAAAAGCGCTGCTAAAGGTAACGTTCTATAGCGGCGTTTGTT
* * **
91836 GGAAAAGCGCTACTAAAGGTAATGTTCTATAGCGGCGTTTGAA
1 GGAAAAGCGCTGCTAAAGGTAACGTTCTATAGCGGCGTTTGTT
* ** * * * *
91879 AGAAAAATGCCGCTGAAGGTCAA-GTTCTATAGCGGCATTAGTT
1 GGAAAAGCGCTGCTAAAGGT-AACGTTCTATAGCGGCGTTTGTT
* *
91922 GTAAAAGCGCTGCTAAAGGTAACATTCTATAGCGG
1 GGAAAAGCGCTGCTAAAGGTAACGTTCTATAGCGG
91957 TGTTCGAGGG
Statistics
Matches: 195, Mismatches: 47, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.04
43 179 0.92
44 6 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
GGAAAAGCGCTGCTAAAGGTAACGTTCTATAGCGGCGTTTGTT
Found at i:91899 original size:129 final size:129
Alignment explanation
Indices: 91667--91909 Score: 282
Period size: 129 Copynumber: 1.9 Consensus size: 129
91657 ATGTGTGGGA
*
91667 AAAGCACCGCTAAAGGCAACGTTCTATAGCAGCGTTTGTGGGAAAAGCGCTGCTAAAGAACACAT
1 AAAGCACCGCTAAAGGCAACGTTCTATAGCAGCGTTTGTGGGAAAAGCGCTACTAAAGAACACAT
** * *
91732 TCTATAGCGGCGTTTGTTGTAAAAGCGTCGTAACAGGTCACGTTCTATAACTGCGTTTGTAGGC
66 TCTATAGCGGCGTTTGAAGAAAAAGCGTCGTAACAGGTCAAGTTCTATAACTGCGTTTGTAGGC
* * * *
91796 AAAGCGCCGCTAAATGTC-ACGTTCTATAGC-GTCGTTTGTTGGAAAAGCGCTACTAAAGGTA-A
1 AAAGCACCGCTAAA-GGCAACGTTCTATAGCAG-CGTTTGTGGGAAAAGCGCTACTAAA-GAACA
** *
91858 TGTTCTATAGCGGCGTTTGAAAGAAAAATGC--CGCTGA-AGGTCAAGTTCTATA
63 CATTCTATAGCGGCGTTTG-AAGAAAAA-GCGTCG-TAACAGGTCAAGTTCTATA
91910 GCGGCATTAG
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
128 1 0.01
129 82 0.85
130 11 0.11
131 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (129 bp):
AAAGCACCGCTAAAGGCAACGTTCTATAGCAGCGTTTGTGGGAAAAGCGCTACTAAAGAACACAT
TCTATAGCGGCGTTTGAAGAAAAAGCGTCGTAACAGGTCAAGTTCTATAACTGCGTTTGTAGGC
Found at i:91953 original size:86 final size:85
Alignment explanation
Indices: 91676--91996 Score: 270
Period size: 86 Copynumber: 3.7 Consensus size: 85
91666 AAAAGCACCG
* * *** * * **
91676 CTAAAGGCAACGTTCTATAGCAGCGTTTGTGGGAAAAGCGCTGCTAAAGAACACA-TTCTATAGC
1 CTAAAGGTAACGTTCTATAGCGGCGTTTGAAAGAAAAACGCCGCTAAAGGTCA-AGTTCTATAGC
91740 GGCGTTTGTTGTAAAAGCG-T
65 GGCGTTTGTTGTAAAAGCGCT
* * * * * * * * *
91760 CGTAACAGGTCACGTTCTATAACTGCGTTTGTAGGCAAAGCGCCGCTAAATGTCACGTTCTATAG
1 C-TAA-AGGTAACGTTCTATAGCGGCGTTTGAAAGAAAAACGCCGCTAAAGGTCAAGTTCTATAG
* *
91825 CGTCGTTTGTTGGAAAAGCGCT
64 CGGCGTTTGTTGTAAAAGCGCT
* * *
91847 ACTAAAGGTAATGTTCTATAGCGGCGTTTGAAAGAAAAATGCCGCTGAAGGTCAAGTTCTATAGC
1 -CTAAAGGTAACGTTCTATAGCGGCGTTTGAAAGAAAAACGCCGCTAAAGGTCAAGTTCTATAGC
* *
91912 GGCATTAGTTGTAAAAGCGCT
65 GGCGTTTGTTGTAAAAGCGCT
* * * ** * * *
91933 GCTAAAGGTAACATTCTATAGCGGTGTTCGAGGGAAAAACACCACTAAAAGTCACA-TTCTATAG
1 -CTAAAGGTAACGTTCTATAGCGGCGTTTGAAAGAAAAACGCCGCTAAAGGTCA-AGTTCTATAG
91997 TGGTATTTGT
Statistics
Matches: 190, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
84 1 0.01
85 3 0.02
86 180 0.95
87 5 0.03
88 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (85 bp):
CTAAAGGTAACGTTCTATAGCGGCGTTTGAAAGAAAAACGCCGCTAAAGGTCAAGTTCTATAGCG
GCGTTTGTTGTAAAAGCGCT
Found at i:92012 original size:43 final size:43
Alignment explanation
Indices: 91934--92041 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 43
91924 AAAAGCGCTG
* * * *
91934 CTAAAGGTAACATTCTATAGCGGTGTTCGAGGGAAAAACACCA
1 CTAAAAGTCACATTCTATAGTGGTATTCGAGGGAAAAACACCA
* **
91977 CTAAAAGTCACATTCTATAGTGGTATTTGTA-GGAAAAACGTCA
1 CTAAAAGTCACATTCTATAGTGGTATTCG-AGGGAAAAACACCA
* **
92020 CTAAATGTCATGTTCTATAGTG
1 CTAAAAGTCACATTCTATAGTG
92042 ACATTTTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 53 0.98
44 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (43 bp):
CTAAAAGTCACATTCTATAGTGGTATTCGAGGGAAAAACACCA
Found at i:94813 original size:137 final size:138
Alignment explanation
Indices: 94556--94824 Score: 432
Period size: 137 Copynumber: 2.0 Consensus size: 138
94546 AGAGAATATA
* * *
94556 AATAAAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTATCGAATTTAT
1 AATAAAATTAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
* ** *
94621 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGCAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAAACATGAAAATTAATATTCTT
94686 TTGGAAAG
131 TTGGAAAG
* *
94694 AATATAATTAATTTATGAATTTAATTCATACAAAATATTAATT-TATATATTTTACCGAATTTAT
1 AATAAAATTAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
* *
94758 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGATATGAAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAAACATGAAAATTAATATTCTT
94823 TT
131 TT
94825 AAAAAATATA
Statistics
Matches: 120, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
137 80 0.67
138 40 0.33
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (138 bp):
AATAAAATTAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
TAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAAACATGAAAATTAATATTCTT
TTGGAAAG
Found at i:97916 original size:55 final size:55
Alignment explanation
Indices: 97871--98016 Score: 190
Period size: 55 Copynumber: 2.7 Consensus size: 55
97861 GTGTTTCTGG
*
97871 TGATGCTGT-TTAGTGCTGTTTTTTGTGCTATTTTTATGCTGTTTGGTGCTGTTT
1 TGATGCTGTATTAGTGCTGTTGTTTGTGCTATTTTTATGCTGTTTGGTGCTGTTT
* *
97925 TGTTGCTGTATTGGTGCTGTTGTTTGTGCTATTTTTATGCTGTTTGGTGCTGTTT
1 TGATGCTGTATTAGTGCTGTTGTTTGTGCTATTTTTATGCTGTTTGGTGCTGTTT
* * * * *
97980 TGGTGTTGT-TTTGTTGCTGTT-TTGGTGCTGTTTTTAT
1 TGATGCTGTATTAG-TGCTGTTGTTTGTGCTATTTTTAT
98017 ACTTAGGTAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
54 25 0.30
55 57 0.70
ACGTcount: A:0.05, C:0.08, G:0.28, T:0.58
Consensus pattern (55 bp):
TGATGCTGTATTAGTGCTGTTGTTTGTGCTATTTTTATGCTGTTTGGTGCTGTTT
Found at i:97926 original size:11 final size:11
Alignment explanation
Indices: 97830--98013 Score: 135
Period size: 11 Copynumber: 16.7 Consensus size: 11
97820 TCTAAGAATA
97830 GCTG-TTTGGT
1 GCTGTTTTGGT
*
97840 GCTGTTTTTTGT
1 GCTG-TTTTGGT
*
97852 GCTATTTTGGT
1 GCTGTTTTGGT
*
97863 G-T-TTCTGGT
1 GCTGTTTTGGT
* *
97872 GATGCTGTTTAGT
1 GCTG-T-TTTGGT
*
97885 GCTGTTTTTTGT
1 GCTG-TTTTGGT
* **
97897 GCTATTTTTAT
1 GCTGTTTTGGT
97908 GCTG-TTTGGT
1 GCTGTTTTGGT
*
97918 GCTGTTTTGTT
1 GCTGTTTTGGT
*
97929 GCTGTATTGGT
1 GCTGTTTTGGT
*
97940 GCTGTTGTTTGT
1 GCTGTT-TTGGT
* **
97952 GCTATTTTTAT
1 GCTGTTTTGGT
97963 GCTG-TTTGGT
1 GCTGTTTTGGT
97973 GCTGTTTTGGT
1 GCTGTTTTGGT
* *
97984 GTTGTTTTGTT
1 GCTGTTTTGGT
97995 GCTGTTTTGGT
1 GCTGTTTTGGT
98006 GCTGTTTT
1 GCTGTTTT
98014 TATACTTAGG
Statistics
Matches: 137, Mismatches: 28, Indels: 17
0.75 0.15 0.09
Matches are distributed among these distances:
9 7 0.05
10 22 0.16
11 74 0.54
12 26 0.19
13 8 0.06
ACGTcount: A:0.04, C:0.09, G:0.29, T:0.58
Consensus pattern (11 bp):
GCTGTTTTGGT
Found at i:101652 original size:17 final size:17
Alignment explanation
Indices: 101630--101664 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
101620 TTGAAGTAAG
101630 GTTCATGTTTGAAATTT
1 GTTCATGTTTGAAATTT
101647 GTTCATGTTTGAAATTT
1 GTTCATGTTTGAAATTT
101664 G
1 G
101665 ACCCATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.20, T:0.51
Consensus pattern (17 bp):
GTTCATGTTTGAAATTT
Found at i:106560 original size:27 final size:27
Alignment explanation
Indices: 106530--106621 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
106520 TTGTTAGTAA
106530 TTTAGGATTATATTATAAATTATTGTG
1 TTTAGGATTATATTATAAATTATTGTG
** * * *
106557 TTTATAATTATTTTAAAATTAATTTATTAGTAA
1 TTTAGGATTATATT---A-TAAATTATT-GT-G
*
106590 TTTAGGATTATATTGTAAATTATTGTG
1 TTTAGGATTATATTATAAATTATTGTG
106617 TTTAG
1 TTTAG
106622 TTTAGTATTT
Statistics
Matches: 48, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
27 16 0.33
28 2 0.04
29 8 0.17
30 1 0.02
31 8 0.17
32 2 0.04
33 11 0.23
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (27 bp):
TTTAGGATTATATTATAAATTATTGTG
Found at i:106566 original size:59 final size:60
Alignment explanation
Indices: 106498--106620 Score: 221
Period size: 60 Copynumber: 2.1 Consensus size: 60
106488 AAATGTAATT
*
106498 TTTATAATTATTTTAAAA-TAATTTGTTAGTAATTTAGGATTATATTATAAATTATTGTG
1 TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATATTATAAATTATTGTG
*
106557 TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATATTGTAAATTATTGTG
1 TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATATTATAAATTATTGTG
106617 TTTA
1 TTTA
106621 GTTTAGTATT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 18 0.30
60 43 0.70
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.54
Consensus pattern (60 bp):
TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATATTATAAATTATTGTG
Found at i:106705 original size:72 final size:72
Alignment explanation
Indices: 106626--106797 Score: 274
Period size: 72 Copynumber: 2.4 Consensus size: 72
106616 GTTTAGTTTA
* *
106626 GTATTTTGTGAGTTTTTAATAATGTAAAATTATTTTGTTAAAAAATTTGTTAGTAATTTATTATA
1 GTATTTTGTGAGTTTTTAATAATGTAAAATTATTTTGTTAAAAAATTTATTAGTAATTCATTATA
106691 AATTGTT
66 AATTGTT
* * *
106698 GTGTTTTGTGAGTTTTTAGA-AATGTAAAATTATTTTGTTAAATATTTTATTAGTAATTCATTAT
1 GTATTTTGTGAGTTTTTA-ATAATGTAAAATTATTTTGTTAAAAAATTTATTAGTAATTCATTAT
106762 AAATTGTT
65 AAATTGTT
*
106770 GTATTTTGTGAGTTTTTAGTAATGTAAA
1 GTATTTTGTGAGTTTTTAATAATGTAAA
106798 TGTTTTAAAA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
72 90 0.99
73 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.52
Consensus pattern (72 bp):
GTATTTTGTGAGTTTTTAATAATGTAAAATTATTTTGTTAAAAAATTTATTAGTAATTCATTATA
AATTGTT
Found at i:106976 original size:13 final size:13
Alignment explanation
Indices: 106958--106986 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
106948 GCGCCACCAA
106958 TAAAAAAATATTT
1 TAAAAAAATATTT
106971 TAAAAAAATATTT
1 TAAAAAAATATTT
106984 TAA
1 TAA
106987 TATAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAAAAATATTT
Found at i:108781 original size:7 final size:7
Alignment explanation
Indices: 108766--108833 Score: 82
Period size: 7 Copynumber: 9.3 Consensus size: 7
108756 ATTATAAACA
108766 TAGGGTT
1 TAGGGTT
*
108773 TATGGTT
1 TAGGGTT
108780 TAGGGTTT
1 TAGGG-TT
*
108788 TAGGATT
1 TAGGGTT
108795 TAGGGTT
1 TAGGGTT
108802 TAGGGTTT
1 TAGGG-TT
*
108810 TAGTGTT
1 TAGGGTT
108817 TAGGGTTT
1 TAGGG-TT
108825 TAGGGTT
1 TAGGGTT
108832 TA
1 TA
108834 AGGTCATCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
7 33 0.63
8 19 0.37
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (7 bp):
TAGGGTT
Found at i:108789 original size:15 final size:15
Alignment explanation
Indices: 108766--108833 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
108756 ATTATAAACA
*
108766 TAGGGTTTATGG-TT
1 TAGGGTTTAGGGTTT
*
108780 TAGGGTTTTA-GGATT
1 TAGGG-TTTAGGGTTT
108795 TAGGGTTTAGGGTTT
1 TAGGGTTTAGGGTTT
*
108810 TAGTGTTTAGGGTTT
1 TAGGGTTTAGGGTTT
108825 TAGGGTTTA
1 TAGGGTTTA
108834 AGGTCATCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
14 11 0.23
15 37 0.77
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (15 bp):
TAGGGTTTAGGGTTT
Found at i:108796 original size:22 final size:21
Alignment explanation
Indices: 108769--108837 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 21
108759 ATAAACATAG
*
108769 GGTTTATGGTTTAGGGTTTTA
1 GGTTTAGGGTTTAGGGTTTTA
108790 GGATTTAGGGTTTAGGGTTTTA
1 GG-TTTAGGGTTTAGGGTTTTA
*
108812 GTGTTTAGGGTTTTAGGGTTTAA
1 G-GTTTAGGG-TTTAGGGTTTTA
108835 GGT
1 GGT
108838 CATCAATTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
21 2 0.05
22 28 0.65
23 13 0.30
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTTTA
Found at i:115069 original size:14 final size:15
Alignment explanation
Indices: 115043--115071 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
115033 GCTTCATCTT
115043 CTTCTTCTTCCTCTG
1 CTTCTTCTTCCTCTG
115058 CTTCTT-TTCCTCTG
1 CTTCTTCTTCCTCTG
115072 GTTTTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.00, C:0.38, G:0.07, T:0.55
Consensus pattern (15 bp):
CTTCTTCTTCCTCTG
Found at i:115470 original size:30 final size:31
Alignment explanation
Indices: 115403--115471 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
115393 ACTGTTAATC
* *
115403 AGTGACTATTTTGTCACTTTTTCATAACATT
1 AGTGACTGTTTTGTAACTTTTTCATAACATT
*
115434 AGTGACTGTTTTGTAACTTTTTGA-AA-ATT
1 AGTGACTGTTTTGTAACTTTTTCATAACATT
115463 GAGTGACTG
1 -AGTGACTG
115472 AAATGAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 10 0.29
31 21 0.62
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (31 bp):
AGTGACTGTTTTGTAACTTTTTCATAACATT
Found at i:119904 original size:48 final size:48
Alignment explanation
Indices: 119849--119940 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
119839 TCTAGTAAGA
* *
119849 TGGCACGCGAACAATAATGAAGAGAAAAGTGGTCCTTCGTTACGAAGC
1 TGGCACGCGAACAATAACGAAGAAAAAAGTGGTCCTTCGTTACGAAGC
119897 TGGCACGCGAACAATAACGAAGAAAAAAGTGGTCCTTCGTTACG
1 TGGCACGCGAACAATAACGAAGAAAAAAGTGGTCCTTCGTTACG
119941 GGTTGGTTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (48 bp):
TGGCACGCGAACAATAACGAAGAAAAAAGTGGTCCTTCGTTACGAAGC
Found at i:121989 original size:11 final size:11
Alignment explanation
Indices: 121975--122005 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
121965 AAAATTAATA
121975 AAAAATATTAT
1 AAAAATATTAT
121986 AAAAATATTAT
1 AAAAATATTAT
121997 AAAAATATT
1 AAAAATATT
122006 TTATATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAAATATTAT
Found at i:126860 original size:28 final size:28
Alignment explanation
Indices: 126829--126883 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
126819 GGAAGCTCAT
*
126829 CAGGACTATCTTT-TATGTGGAAGTCCGC
1 CAGGACTAT-TTTCAATGTGGAAGTCCGC
126857 CAGGACTATTTTCAATGTGGAAGTCCG
1 CAGGACTATTTTCAATGTGGAAGTCCG
126884 TCAAGATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (28 bp):
CAGGACTATTTTCAATGTGGAAGTCCGC
Found at i:132659 original size:21 final size:22
Alignment explanation
Indices: 132615--132663 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
132605 TTGTTTCTTT
*
132615 TATTTTAAAAAATAACGTGTAATA
1 TATTTTAAAAAAT-A-GAGTAATA
132639 TATTTTAAAAAAT-GAGTAATA
1 TATTTTAAAAAATAGAGTAATA
132660 TATT
1 TATT
132664 AATAAAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 11 0.46
24 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (22 bp):
TATTTTAAAAAATAGAGTAATA
Found at i:132734 original size:13 final size:13
Alignment explanation
Indices: 132718--132742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
132708 TTTTAAAATA
132718 TAAAAATAACGTG
1 TAAAAATAACGTG
132731 TAAAAATAACGT
1 TAAAAATAACGT
132743 CTATAGATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (13 bp):
TAAAAATAACGTG
Found at i:136163 original size:19 final size:19
Alignment explanation
Indices: 136139--136184 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
136129 TGATTTATTC
136139 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
*
136158 TAAGATTTATCTATCTAAA
1 TAAGATTTATCTACCTAAA
136177 TAA-ATTTA
1 TAAGATTTA
136185 AAATATATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.41
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Done.