Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold304.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1330559
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.33
Warning! 52275 characters in sequence are not A, C, G, or T
File 4 of 4
Found at i:1137894 original size:28 final size:30
Alignment explanation
Indices: 1137862--1137920 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
1137852 AGCCATTTTT
1137862 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
1137890 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
1137920 A
1 A
1137921 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:1138358 original size:3 final size:3
Alignment explanation
Indices: 1138343--1138393 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
1138333 CCATTTTTCC
* *
1138343 TCT TCT CCT TCT TCT TCT TC- TCT TCCT ACT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT
1138387 TCT TCT T
1 TCT TCT T
1138394 TTCAAACCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.02, C:0.37, G:0.00, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:1138368 original size:26 final size:26
Alignment explanation
Indices: 1138339--1138389 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1138329 ATATCCATTT
1138339 TTCCT-CTTCTCCTTCTTCTTCTTCTC
1 TTCCTACTTCT-CTTCTTCTTCTTCTC
1138365 TTCCTACTTCTCTTCTTCTTCTTCT
1 TTCCTACTTCTCTTCTTCTTCTTCT
1138390 TCTTTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (26 bp):
TTCCTACTTCTCTTCTTCTTCTTCTC
Found at i:1138920 original size:16 final size:17
Alignment explanation
Indices: 1138895--1138938 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
1138885 CATTTAATGC
1138895 ATTATATTTAAA-AAAA
1 ATTATATTTAAATAAAA
*
1138911 ATTATTTTTAAATAAAA
1 ATTATATTTAAATAAAA
*
1138928 ACTA-ATTTAAA
1 ATTATATTTAAA
1138939 AGAAAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTATATTTAAATAAAA
Found at i:1141553 original size:44 final size:44
Alignment explanation
Indices: 1141488--1141577 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
1141478 AAAATTCTCT
*
1141488 AAATGTGTTATGAGTTCTAATGGGTGTATTTTCTAAGGTTGTAA
1 AAATGTGTTATGAGTTATAATGGGTGTATTTTCTAAGGTTGTAA
1141532 AAATGTGTTATGAGTTATAATGGGTGTATTTTCTAAGGTTGTAA
1 AAATGTGTTATGAGTTATAATGGGTGTATTTTCTAAGGTTGTAA
1141576 AA
1 AA
1141578 GAGCCTATGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.30, C:0.03, G:0.24, T:0.42
Consensus pattern (44 bp):
AAATGTGTTATGAGTTATAATGGGTGTATTTTCTAAGGTTGTAA
Found at i:1143453 original size:18 final size:18
Alignment explanation
Indices: 1143432--1143581 Score: 79
Period size: 18 Copynumber: 7.9 Consensus size: 18
1143422 GAACAATTAT
1143432 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
1143450 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAA
* * * *
1143468 TTATTCAATAATAATCAG
1 TTATTCAGTAACAGTCAA
1143486 TTATTCAGTATCAATCAATTGATCAA
1 TTATTCAG--T-AA-C-A--G-TCAA
*
1143512 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
1143530 TTATTCAATAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
1143548 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
*
1143566 TTATTCAGTAATAGTC
1 TTATTCAGTAACAGTC
1143582 GATCTTTCTA
Statistics
Matches: 98, Mismatches: 22, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
17 12 0.12
18 54 0.55
19 13 0.13
20 1 0.01
21 3 0.03
22 1 0.01
23 3 0.03
24 1 0.01
26 10 0.10
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:1143472 original size:36 final size:36
Alignment explanation
Indices: 1143398--1143505 Score: 94
Period size: 36 Copynumber: 3.0 Consensus size: 36
1143388 CAATCAGTAA
* * * * *
1143398 TATTCATTAACAATCAGTCAATT-AG-AACAATTATT
1 TATTCAATAACAATCAAT-TATTCAGTAACAATCAAT
* * *
1143433 TATTCAGTAACAGTCAATTATTCGGTAACAATCAAT
1 TATTCAATAACAATCAATTATTCAGTAACAATCAAT
* * *
1143469 TATTCAATAATAATCAGTTATTCAGTATCAATCAAT
1 TATTCAATAACAATCAATTATTCAGTAACAATCAAT
1143505 T
1 T
1143506 GATCAATTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
34 3 0.05
35 16 0.28
36 39 0.67
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (36 bp):
TATTCAATAACAATCAATTATTCAGTAACAATCAAT
Found at i:1143523 original size:62 final size:61
Alignment explanation
Indices: 1143446--1143561 Score: 169
Period size: 62 Copynumber: 1.9 Consensus size: 61
1143436 TCAGTAACAG
* * * * *
1143446 TCAATTATTCGGTAACAATCAATTATTCAATAATAATCAGTTATTCAGTATCAATCAATTGA
1 TCAATTATCCAGTAACAATCAATTATTCAATAA-AATCAGATATACAGTAACAATCAATTGA
*
1143508 TCAATTATCCAGTAACAGTCAATTATTCAATAAAATCAGATATACAGTAACAAT
1 TCAATTATCCAGTAACAATCAATTATTCAATAAAATCAGATATACAGTAACAAT
1143562 TAAATTATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
61 18 0.38
62 30 0.62
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.34
Consensus pattern (61 bp):
TCAATTATCCAGTAACAATCAATTATTCAATAAAATCAGATATACAGTAACAATCAATTGA
Found at i:1143538 original size:26 final size:26
Alignment explanation
Indices: 1143481--1143531 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1143471 TTCAATAATA
* * *
1143481 ATCAGTTATTCAGTATCAATCAATTG
1 ATCAATTATCCAGTAACAATCAATTG
*
1143507 ATCAATTATCCAGTAACAGTCAATT
1 ATCAATTATCCAGTAACAATCAATT
1143532 ATTCAATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (26 bp):
ATCAATTATCCAGTAACAATCAATTG
Found at i:1150065 original size:37 final size:37
Alignment explanation
Indices: 1150024--1150103 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
1150014 GACTAGTCCT
1150024 ACCCAAGACACA-CTAAACTAACCCAATAACCCG-TTAC
1 ACCCAAGACACAGCTAAACT-ACCCAA-AACCCGTTTAC
* * *
1150061 ACCCATGACCCAGCTAAACTACCCAAAACCTGTTTAC
1 ACCCAAGACACAGCTAAACTACCCAAAACCCGTTTAC
1150098 ACCCAA
1 ACCCAA
1150104 ACCCAATAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.14
37 25 0.68
38 7 0.19
ACGTcount: A:0.40, C:0.39, G:0.06, T:0.15
Consensus pattern (37 bp):
ACCCAAGACACAGCTAAACTACCCAAAACCCGTTTAC
Found at i:1161426 original size:119 final size:119
Alignment explanation
Indices: 1161214--1161445 Score: 392
Period size: 119 Copynumber: 1.9 Consensus size: 119
1161204 AAATTAAAGA
*
1161214 TAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCT
1 TAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGCT
*
1161279 TACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
66 TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
* * *
1161333 TAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGTATTCTTGTGTT
1 TAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGCT
* * *
1161398 TATAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCT
66 TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCT
1161446 TAAACAAACT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 105 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
TAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATCCTTGTGCT
TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
Found at i:1161493 original size:83 final size:83
Alignment explanation
Indices: 1161373--1161528 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
1161363 GAAGCAAATC
* * * * *
1161373 CAAGATGATTTGGTATTCTTGTGTTTATAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
1161438 AATGTTCTTAAACAAACT
66 AAAGTTCTTAAACAAACT
* *
1161456 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
1161521 AAAGTTCT
66 AAAGTTCT
1161529 CAAATGTAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
AAAGTTCTTAAACAAACT
Found at i:1161600 original size:202 final size:202
Alignment explanation
Indices: 1161254--1162130 Score: 1484
Period size: 202 Copynumber: 4.4 Consensus size: 202
1161244 GAAGCAGATC
*
1161254 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
*
1161319 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTT
66 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
* *
1161384 GGTATTCTTGTGTTTATAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTTAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
1161449 ACAAACT
196 ACAAACT
1161456 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1161521 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
*
1161586 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTTAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
**
1161651 ACAAGTT
196 ACAAACT
* *
1161658 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
* * * * * * *
1161723 GACGTTCTCAGATATGGCAGATCTAACCTTC--A-G-----A-TGAAGCAGATCTAAGATGTTTT
66 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
1161779 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
1161844 ACAAACT
196 ACAAACT
1161851 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1161916 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
1161981 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
131 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
1162046 ACAAACT
196 ACAAACT
* * * * * * *
1162053 CAAGATGGTTTGGCATCTTTATGCTTACAAGGGACAAATCAAGGATATAACAGATATGATTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1162118 AAAGTTCTCAAAT
66 AAAGTTCTCAAAT
1162131 AGATCAAGAT
Statistics
Matches: 633, Mismatches: 33, Indels: 18
0.93 0.05 0.03
Matches are distributed among these distances:
193 178 0.28
194 1 0.00
195 1 0.00
196 1 0.00
199 1 0.00
200 1 0.00
201 1 0.00
202 449 0.71
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (202 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
ACAAACT
Found at i:1161730 original size:83 final size:83
Alignment explanation
Indices: 1161575--1161730 Score: 222
Period size: 83 Copynumber: 1.9 Consensus size: 83
1161565 GAAGCAGATC
* * * *
1161575 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
1161640 AATGTTCTTAAACAAGTT
66 AACGTTCTTAAACAAGTT
* * * *
1161658 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
1161723 GACGTTCT
66 AACGTTCT
1161731 CAGATATGGC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 63 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
AACGTTCTTAAACAAGTT
Found at i:1161879 original size:83 final size:83
Alignment explanation
Indices: 1161769--1161923 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
1161759 AAGCAGATCT
* * * *
1161769 AAGATGTTTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTA-CAGATATGACTCTCA
1 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA-TAGCAGATATGACTCTCA
*
1161833 AATGTTCTTAAACAAACTC
65 AAAGTTCTTAAACAAACTC
*
1161852 AAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCAA
1 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAA
1161917 AAGTTCT
66 AAGTTCT
1161924 CAAATGTAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 2 0.03
83 63 0.97
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (83 bp):
AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAA
AAGTTCTTAAACAAACTC
Found at i:1161993 original size:395 final size:399
Alignment explanation
Indices: 1161254--1162131 Score: 1485
Period size: 395 Copynumber: 2.2 Consensus size: 399
1161244 GAAGCAGATC
* *
1161254 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGATTCTCA
*
1161319 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTT
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCA-ATG----TACTGAAGCAAATCCAAGATGATTT
* *
1161384 GGTATTCTTGTGTTTATAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTTAA
126 GGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAA
1161449 ACAAACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATG
191 ACAAACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATG
1161514 ACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAG
256 ACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAG
*
1161579 ATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATG
321 ATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATG
**
1161644 TTCTTAAACAAGTT
386 TTCTTAAACAAACT
*
1161658 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGATTCTCA
* * * * * * *
1161723 GACGTTCTCAGATATGGCAGATCTAACCTTC-A-G-A-TGAAGCAGATCTAAGATGTTTTGGTAT
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAATGTACTGAAGCAAATCCAAGATGATTTGGTAT
1161784 TCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAAACAAA
131 TCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAAACAAA
1161849 CTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCT
196 CTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCT
1161914 CAAAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGAT
261 CAAAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGAT
1161979 TTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTT
326 TTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTT
1162044 AAACAAACT
391 AAACAAACT
* * * * * *
1162053 CAAGATGGTTTGGCATCTTTATGCTTACAAGGGACAAATCAAGGATATAACAGATATGATTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGATTCTCA
1162118 AAAGTTCTCAAATA
66 AAAGTTCTCAAATA
1162132 GATCAAGATG
Statistics
Matches: 448, Mismatches: 26, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
395 357 0.80
396 1 0.00
401 1 0.00
402 1 0.00
404 88 0.20
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (399 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGATTCTCA
AAAGTTCTCAAATATAGCAGATCTAACCTTCAATGTACTGAAGCAAATCCAAGATGATTTGGTAT
TCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTTAAACAAA
CTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATATGACTCT
CAAAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGAT
TTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCAAATGTTCTT
AAACAAACT
Found at i:1162084 original size:83 final size:82
Alignment explanation
Indices: 1161970--1162152 Score: 217
Period size: 83 Copynumber: 2.2 Consensus size: 82
1161960 GAAGCAGATC
* * * * *
1161970 CAAGATGATTTGGTAT-TCTTGTGTTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTC
1 CAAGATGATTTGGCATCT-TTATGCTTACAAGGAACAAATCAAGGACATAACAGATATGACTCTC
*
1162034 -AAATGTTCTTAAACAAACT
65 GAAA-GTTCTCAAACAAA-T
* * * *
1162053 CAAGATGGTTTGGCATCTTTATGCTTACAAGGGACAAATCAAGGATATAACAGATATGATTCTCG
1 CAAGATGATTTGGCATCTTTATGCTTACAAGGAACAAATCAAGGACATAACAGATATGACTCTCG
* *
1162118 AAAGTTCTCAAATAGAT
66 AAAGTTCTCAAACAAAT
1162135 CAAGATGATTTGGCATCT
1 CAAGATGATTTGGCATCT
1162153 CTACAAATCG
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
82 18 0.21
83 63 0.74
84 4 0.05
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (82 bp):
CAAGATGATTTGGCATCTTTATGCTTACAAGGAACAAATCAAGGACATAACAGATATGACTCTCG
AAAGTTCTCAAACAAAT
Found at i:1163790 original size:23 final size:24
Alignment explanation
Indices: 1163751--1163806 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
1163741 TGAGTATACA
* *
1163751 TATATATTTTATAATTAT-TTACT
1 TATATGTTTTATAATTATACTACT
1163774 TATATGTTATTAT-ATTATACTACT
1 TATATGTT-TTATAATTATACTACT
1163798 T-TATGTTTT
1 TATATGTTTT
1163807 TCCATTGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 2 0.07
23 18 0.62
24 9 0.31
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (24 bp):
TATATGTTTTATAATTATACTACT
Found at i:1163962 original size:27 final size:27
Alignment explanation
Indices: 1163928--1163989 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
1163918 CATTTTAACA
* * *
1163928 ATATATTATTTCATATTATTATTTATT
1 ATATATTATTTCACATTACTATATATT
*
1163955 ATATATTATTTTACATTACTATATATT
1 ATATATTATTTCACATTACTATATATT
1163982 ATTATATT
1 A-TATATT
1163990 GGCTTGTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 24 0.80
28 6 0.20
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (27 bp):
ATATATTATTTCACATTACTATATATT
Found at i:1163964 original size:20 final size:21
Alignment explanation
Indices: 1163941--1163986 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
1163931 TATTATTTCA
* *
1163941 TATTATTA-TTTATTATATAT
1 TATTATTACATTACTATATAT
1163961 TATT-TTACATTACTATATAT
1 TATTATTACATTACTATATAT
1163981 TATTAT
1 TATTAT
1163987 ATTGGCTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 3 0.14
20 18 0.82
21 1 0.05
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTATTACATTACTATATAT
Found at i:1165372 original size:21 final size:22
Alignment explanation
Indices: 1165334--1165374 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
1165324 CTCCCGTTTT
* *
1165334 CATTTTTCTTAAAGTCGATTCC
1 CATTTTTCTAAAACTCGATTCC
1165356 CATTTTTC-AAAACTCGATT
1 CATTTTTCTAAAACTCGATT
1165375 TAAAAATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (22 bp):
CATTTTTCTAAAACTCGATTCC
Found at i:1165465 original size:14 final size:14
Alignment explanation
Indices: 1165443--1165492 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 14
1165433 TATGTACATA
1165443 ACATA-AATATCAT
1 ACATATAATATCAT
1165456 ACATATAATATC-T
1 ACATATAATATCAT
*
1165469 AAATAT-ATA-CAT
1 ACATATAATATCAT
1165481 ACATATATATAT
1 ACATATA-ATAT
1165493 ATAGTATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
11 1 0.03
12 9 0.30
13 11 0.37
14 9 0.30
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (14 bp):
ACATATAATATCAT
Found at i:1165488 original size:22 final size:22
Alignment explanation
Indices: 1165446--1165488 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1165436 GTACATAACA
*
1165446 TAAATATCATACATATAATATC
1 TAAATATCATACATACAATATC
1165468 TAAATAT-ATACATACATATAT
1 TAAATATCATACATACA-ATAT
1165489 ATATATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TAAATATCATACATACAATATC
Found at i:1166386 original size:22 final size:24
Alignment explanation
Indices: 1166355--1166400 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
1166345 TTCGAAAATA
1166355 AAATAAAAAGAAAA-AA-AATAAT
1 AAATAAAAAGAAAATAATAATAAT
*
1166377 AAATAGAAAGAAAATAATAATAAT
1 AAATAAAAAGAAAATAATAATAAT
1166401 GTAATATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.62
23 2 0.10
24 6 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (24 bp):
AAATAAAAAGAAAATAATAATAAT
Found at i:1166395 original size:21 final size:20
Alignment explanation
Indices: 1166348--1166399 Score: 65
Period size: 18 Copynumber: 2.7 Consensus size: 20
1166338 AAGCAAATTC
1166348 GAAAATAA-AATAAAAAGAA
1 GAAAATAATAATAAAAAGAA
*
1166367 -AAAA-AATAATAAATAGAAA
1 GAAAATAATAATAAAAAG-AA
1166386 GAAAATAATAATAA
1 GAAAATAATAATAA
1166400 TGTAATATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 2 0.07
18 12 0.43
19 2 0.07
20 4 0.14
21 8 0.29
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (20 bp):
GAAAATAATAATAAAAAGAA
Found at i:1170375 original size:21 final size:21
Alignment explanation
Indices: 1170350--1170391 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1170340 ACTCGTAATG
*
1170350 TTTTAAGTGATGGGTTTTGAT
1 TTTTAAGTGATAGGTTTTGAT
1170371 TTTTAAGTGATAGGTTTTGAT
1 TTTTAAGTGATAGGTTTTGAT
1170392 GCTTGAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.52
Consensus pattern (21 bp):
TTTTAAGTGATAGGTTTTGAT
Found at i:1172221 original size:6 final size:6
Alignment explanation
Indices: 1172210--1172239 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
1172200 TTAATCTTAT
1172210 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1172240 ATTGGATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:1172248 original size:18 final size:18
Alignment explanation
Indices: 1172210--1172248 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1172200 TTAATCTTAT
* **
1172210 TTTTTATTTTTATTTTTA
1 TTTTTATTTTTAATTGGA
1172228 TTTTTATTTTTAATTGGA
1 TTTTTATTTTTAATTGGA
1172246 TTT
1 TTT
1172249 AATCACCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTTTATTTTTAATTGGA
Found at i:1177256 original size:19 final size:19
Alignment explanation
Indices: 1177231--1177321 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
1177221 ATAATCTTCA
1177231 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
1177250 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
1177269 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
1177286 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
1177304 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
1177322 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:1177271 original size:14 final size:15
Alignment explanation
Indices: 1177252--1177307 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
1177242 TCTTAGATGT
1177252 GATATG-CAATCTTA
1 GATATGACAATCTTA
1177266 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
1177283 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
1177301 GATATGA
1 GATATGA
1177308 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:1177301 original size:35 final size:37
Alignment explanation
Indices: 1177231--1177328 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
1177221 ATAATCTTCA
*
1177231 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
1177269 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
1177304 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
1177329 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:1177347 original size:22 final size:22
Alignment explanation
Indices: 1177231--1177344 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
1177221 ATAATCTTCA
1177231 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
1177250 GTGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
1177269 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
1177286 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
1177304 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
1177326 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
1177345 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 32 0.38
22 8 0.10
23 12 0.14
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:1177636 original size:18 final size:17
Alignment explanation
Indices: 1177613--1177646 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1177603 TTTCCCTGAT
*
1177613 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
1177631 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
1177647 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:1180613 original size:20 final size:20
Alignment explanation
Indices: 1180575--1180613 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1180565 CCGCATATGT
*
1180575 AATCTATTTTCATGTAAAGA
1 AATCTATTTTCATGAAAAGA
1180595 AATCTATTTT-ATAGAAAAG
1 AATCTATTTTCAT-GAAAAG
1180614 TTATTCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (20 bp):
AATCTATTTTCATGAAAAGA
Found at i:1185837 original size:44 final size:44
Alignment explanation
Indices: 1185790--1186447 Score: 513
Period size: 44 Copynumber: 15.0 Consensus size: 44
1185780 TAATTTGGTG
* * *
1185790 TCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * * **
1185834 TCTCTGTATTATCAGAGAGCAGATCGAAGATAGTAGGTTTGGTG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * * *
1185878 TCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAAATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
** * * *
1185921 TCTCCATATTCGACGGAGAGCAGATCGAAGAAATAGCAGATTTGGCCT
1 TCTCTGTATT-GTCAGAGAGCAGATCGAAG--ATAGCAGATTTGG-CA
* * * ** **
1185969 TCACGTGT-TT-ACATTGA-AGCAAATTTAAGAT-G-AG--TTGGTG
1 TCTC-TGTATTGTCA--GAGAGCAGATCGAAGATAGCAGATTTGGCA
* * * *
1186009 TCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGTA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * * *
1186053 TCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGACA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* ** * * *
1186096 TTTCCATATTTGACGGAGAGCAGATCGAAGTCATAGCAGATTTGGCC
1 TCTCTGTA-TTGTCAGAGAGCAGATCGAAG--ATAGCAGATTTGGCA
* * *
1186143 T-TCATGTGTT-TACACTGA-AGC-GAATCTAAGAT----GATTTGGCG
1 TCTC-TGTATTGT-CA--GAGAGCAG-ATCGAAGATAGCAGATTTGGCA
* * * *
1186184 CCTCTGTATTGTCAGAGAGCAGATCAAAGACAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * *
1186228 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * *
1186272 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * *
1186316 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* * *
1186360 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
* *
1186404 TCTCTGTATTGTCAGAGAGCAAATTGAAGACATAGCAGATTTGG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAG--ATAGCAGATTTGG
1186448 TTTTCACGTG
Statistics
Matches: 501, Mismatches: 79, Indels: 66
0.78 0.12 0.10
Matches are distributed among these distances:
39 7 0.01
40 26 0.05
41 22 0.04
42 5 0.01
43 31 0.06
44 334 0.67
45 4 0.01
46 22 0.04
47 39 0.08
48 10 0.02
49 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (44 bp):
TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCA
Found at i:1185883 original size:88 final size:88
Alignment explanation
Indices: 1185790--1186574 Score: 542
Period size: 88 Copynumber: 8.9 Consensus size: 88
1185780 TAATTTGGTG
* * * * * *
1185790 TCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTATCAGAGAGCA
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAGAGCA
* * **
1185855 GATCGAAGATAGTAGGTTTGGTG
66 GATCGAAGATAGCAGATTTGGCA
* * ** * *
1185878 TCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAAATTTGGCATCTCCATATTCGACGGAGAGC
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT-GTCAGAGAGC
*
1185942 AGATCGAAGAAATAGCAGATTTGGCCT
65 AGATCGAAG--ATAGCAGATTTGG-CA
* * ** * ** *
1185969 TCACGTGT-TT-ACATTGA-AGCAAATTTAAGAT----GAGTTGGTGTCTCTGTATTGTTAGAGA
1 TCTC-TGTATTGTCA--GAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAGA
* * *
1186027 GCAGATCAAAGATAGAAGATTTGGTA
63 GCAGATCGAAGATAGCAGATTTGGCA
* * * ** * *
1186053 TCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGACATTTCCATATTTGACGGAGAGC
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTA-TTGTCAGAGAGC
*
1186117 AGATCGAAGTCATAGCAGATTTGGCC
65 AGATCGAAG--ATAGCAGATTTGGCA
* * * **
1186143 T-TCATGTGTT-TACACTGA-AGCGAATCTAAGAT----GATTTGGCGCCTCTGTATTGTCAGAG
1 TCTC-TGTATTGT-CA--GAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAG
* * *
1186201 AGCAGATCAAAGACAGCAGATTTGGCG
62 AGCAGATCGAAGATAGCAGATTTGGCA
* * * *
1186228 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTGTCAGGGAGCA
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAGAGCA
* *
1186293 GATTGAAGATAACAGATTTGGCA
66 GATCGAAGATAGCAGATTTGGCA
* * * *
1186316 TCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTGTCAGGGAGCA
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAGAGCA
* *
1186381 GATTGAAGATAACAGATTTGGCA
66 GATCGAAGATAGCAGATTTGGCA
* * ** * *
1186404 TCTCTGTATTGTCAGAGAGCAAATTGAAGACATAGCAGATTTGGTTTTCACGTGT-TT-ACACTG
1 TCTCTGTATTGTCAGAGAGCAAATCGAAG--ATAACAGATTTGG-CATCTC-TGTATTGTCA--G
* *
1186467 A-AAC-GAATCTAAGAT----GATTTGGCA
60 AGAGCAG-ATCGAAGATAGCAGATTTGGCA
* * ** *
1186491 TCTCTGTACTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTTGAT-GGAGAG
1 TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTA-TTG-TCAGAGAG
1186554 CAGATCGAAGACATAGCAGAT
64 CAGATCGAAG--ATAGCAGAT
1186575 CTGACCTTCA
Statistics
Matches: 542, Mismatches: 106, Indels: 96
0.73 0.14 0.13
Matches are distributed among these distances:
82 1 0.00
83 11 0.02
84 45 0.08
85 37 0.07
86 5 0.01
87 96 0.18
88 243 0.45
89 3 0.01
90 51 0.09
91 39 0.07
92 11 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (88 bp):
TCTCTGTATTGTCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAGAGAGCA
GATCGAAGATAGCAGATTTGGCA
Found at i:1186125 original size:219 final size:219
Alignment explanation
Indices: 1185719--1186125 Score: 528
Period size: 219 Copynumber: 1.9 Consensus size: 219
1185709 CGTTTACAAG
* * * * * * *
1185719 GAGCAGATTGAAGACATAACAGGTTTGGCTTTCACGTGTTTACGCTGAAGCGAATCTAAGATAAT
1 GAGCAGATCGAAGAAATAACAGATTTGGCCTTCACGTGTTTACACTGAAGCAAATCTAAGATAAG
* *
1185784 TTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTATCAG
66 TTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGCATCTCTGTATTATCAG
* * ** * *** ** *
1185849 AGAGCAGATCGAAGATAGTAGGTTTGGTGTCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAA
131 AGAACAAATCGAAGATAACAGATTTGACATCTCCATATTGACAGAGAACAAATCGAAGAAACAAA
1185914 TTTGGCATCTCCATATTCGACGGA
196 TTTGGCATCTCCATATTCGACGGA
* * * *
1185938 GAGCAGATCGAAGAAATAGCAGATTTGGCCTTCACGTGTTTACATTGAAGCAAATTTAAGATGAG
1 GAGCAGATCGAAGAAATAACAGATTTGGCCTTCACGTGTTTACACTGAAGCAAATCTAAGATAAG
* *
1186003 TTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGTATCTCTGTATTGTCAG
66 TTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGCATCTCTGTATTATCAG
* * * *
1186068 AGAACAAATCGAAGA-AACAGATTTGACATTTCCATATTTGACGGAGAGCAGATCGAAG
131 AGAACAAATCGAAGATAACAGATTTGACATCTCCATA-TTGACAGAGAACAAATCGAAG
1186126 TCATAGCAGA
Statistics
Matches: 157, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
218 12 0.08
219 145 0.92
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (219 bp):
GAGCAGATCGAAGAAATAACAGATTTGGCCTTCACGTGTTTACACTGAAGCAAATCTAAGATAAG
TTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGCATCTCTGTATTATCAG
AGAACAAATCGAAGATAACAGATTTGACATCTCCATATTGACAGAGAACAAATCGAAGAAACAAA
TTTGGCATCTCCATATTCGACGGA
Found at i:1186294 original size:175 final size:170
Alignment explanation
Indices: 1185825--1186447 Score: 644
Period size: 175 Copynumber: 3.6 Consensus size: 170
1185815 AAAGATAGCA
* * * * **
1185825 GATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAAGATAGTAGGTTTGGTGTCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGT
* *
1185890 CAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCGAAGAAA
66 CAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATT-GTCAGGAGAGCAGATCGAAG--A
*
1185954 TAGCAGATTTGGCCTTCACGTGTTTACATTGAAGCAAATTTAAGAT
128 TAGCAGATTTGGCCTTCATGTGTTTACA-TGAAGC-AA-TTAAGAT
* * * * *
1186000 GAGTTGGTGTCTCTGTATTGTTAGAGAGCAGATCAAAGATAGAAGATTTGGTATCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGT
* * *
1186065 CAGAGAACAAATCGAAGAAACAGATTTGACATTTCCATATT-TGACGGAGAGCAGATCGAAGTCA
66 CAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTGTCA-GGAGAGCAGATCGAAG--A
1186129 TAGCAGATTTGGCCTTCATGTGTTTACACTGAAGCGAATCTAAGAT
128 TAGCAGATTTGGCCTTCATGTGTTTACA-TGAAGC-AAT-TAAGAT
* * *
1186175 GATTTGGCGCCTCTGTATTGTCAGAGAGCAGATCAAAGACAGCAGATTTGGCGTCTCTGTATTGT
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGT
* * * * ** *
1186240 CAGGGAGCAGATTGAAGATAACAGATTTGGCATCTCTGTATTGTCAGG-GAGCAGATTGAAGATA
66 CAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTGTCAGGAGAGCAGATCGAAGATA
* * * * *
1186304 ACAGATTTGGCATCTC-TGTATTGT-CAGGGAGCAGATTGAAGAT
130 GCAGATTTGGCCT-TCATGTGTT-TACATGAAGCA-ATT-AAGAT
* * ** *
1186347 AACAGATTTGGCATCTCTGTATTGTCAGGGAGCAGATTGAAGATAACAGATTTGGCATCTCTGTA
1 ----GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTA
* *
1186412 TTGTCAGAGAGCAAATTGAAGACATAGCAGATTTGG
62 TTGTCAGAGAACAAATCGAAGA-A-A-CAGATTTGG
1186448 TTTTCACGTG
Statistics
Matches: 381, Mismatches: 52, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
171 2 0.01
172 11 0.03
173 21 0.06
174 4 0.01
175 236 0.62
176 95 0.25
177 3 0.01
178 9 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (170 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGT
CAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTGTCAGGAGAGCAGATCGAAGATAG
CAGATTTGGCCTTCATGTGTTTACATGAAGCAATTAAGAT
Found at i:1186657 original size:78 final size:78
Alignment explanation
Indices: 1186525--1186819 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
1186515 CGAAGAAACA
* * *
1186525 GATTTGGCATCTCCATATTTGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1186590 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
1186603 GACTTGGCATCTCTATATTAGATGAAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1186668 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * * *
1186681 GATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAATACATAACAGAT-TGGACATTCATTGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
1186745 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
1186759 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1186820 GTGTTTACAT
Statistics
Matches: 195, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 193 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:1186674 original size:37 final size:37
Alignment explanation
Indices: 1186552--1186679 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 37
1186542 TTTGATGGAG
* *
1186552 AGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 AGCAGATCCAAGACACAGCAGATCTGACCTTCATTGA
* * ** ** *
1186589 AGCAGATCCAAGATGACTTGGCATCTCT-ATATT-AGATGAA
1 AGCAGATCCAAGA-CAC--AGCAGATCTGACCTTCA-TTG-A
*
1186629 GAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGA
1 -AGCAGATCCAAGACACAGCAGATCTGACCTTCATTGA
1186667 AGCAGATCCAAGA
1 AGCAGATCCAAGA
1186680 TGATTTGACA
Statistics
Matches: 65, Mismatches: 18, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
37 24 0.37
38 9 0.14
39 10 0.15
40 10 0.15
41 12 0.18
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (37 bp):
AGCAGATCCAAGACACAGCAGATCTGACCTTCATTGA
Found at i:1186914 original size:45 final size:45
Alignment explanation
Indices: 1186833--1186977 Score: 161
Period size: 45 Copynumber: 3.2 Consensus size: 45
1186823 TTTACATCGA
* * * * *
1186833 AGCAGATCCAAGAAGACAGATTTGGTATCTTTGTATTAGACGGGG
1 AGCAAATCGAAGAAGAAAGATTTGGCATCTCTGTATTAGACGGGG
*
1186878 AGCAAATCGGAGAA-AATAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGAAGAA-AGATTTGGCATCTCTGTATTAGACGGGG
* * *
1186923 AG-AAGATTGAAGAAGCAA-ATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAA-ATCGAAGAAGAAAGATTTGGCATCTCTGTATTAGACGGGG
*
1186967 AGCAGATCGAA
1 AGCAAATCGAA
1186978 AATAGCAAAT
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
44 35 0.42
45 48 0.57
46 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (45 bp):
AGCAAATCGAAGAAGAAAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:1186957 original size:44 final size:45
Alignment explanation
Indices: 1186852--1186987 Score: 147
Period size: 44 Copynumber: 3.0 Consensus size: 45
1186842 AAGAAGACAG
* *
1186852 ATTTGGTATCTTTGTATTAGACGGGGAGCAA-ATCGGAGAAAATAG---
1 ATTTGGCATCTCTGTATTAGACGGGGAG-AAGATC---GAAAATAGCAA
* *
1186897 ATTTGGCATCTCTGTATTAGACGGGGAGAAGATTGAAGA-AGCAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAAATAGCAA
* *
1186941 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAAATAGCAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAAATAGCAA
1186986 AT
1 AT
1186988 ATCGCTTTCC
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
41 2 0.03
42 4 0.05
44 37 0.47
45 35 0.45
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGAAGATCGAAAATAGCAA
Found at i:1187362 original size:19 final size:19
Alignment explanation
Indices: 1187337--1187409 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
1187327 ATAATCTTCA
1187337 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
1187356 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
1187375 ATGATA--CAATCTTATAT
1 ATGATATGCAATCTTAGAT
1187392 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
1187410 AGATATGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
17 16 0.33
19 32 0.67
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:1192331 original size:7 final size:6
Alignment explanation
Indices: 1192290--1192330 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
1192280 ATAATTTAAT
*
1192290 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
1192331 AATATAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:1192331 original size:20 final size:20
Alignment explanation
Indices: 1192293--1192331 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1192283 ATTTAATAAA
**
1192293 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
1192313 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
1192332 ATATAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:1192363 original size:9 final size:9
Alignment explanation
Indices: 1192349--1192416 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
1192339 TTTATACAAA
1192349 TAATTCGGT
1 TAATTCGGT
1192358 TAATTCGGT
1 TAATTCGGT
*
1192367 TAATTTAGG-
1 TAA-TTCGGT
*
1192376 TAATTCGGG
1 TAATTCGGT
* *
1192385 TAATTCTGC
1 TAATTCGGT
*
1192394 TAATTCGAT
1 TAATTCGGT
1192403 TAATTCGGT
1 TAATTCGGT
1192412 TAATT
1 TAATT
1192417 TTATACTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
8 4 0.08
9 41 0.84
10 4 0.08
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:1193792 original size:14 final size:14
Alignment explanation
Indices: 1193773--1193800 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1193763 TTTTTACATA
1193773 TATTAATATATATT
1 TATTAATATATATT
1193787 TATTAATATATATT
1 TATTAATATATATT
1193801 AATAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTAATATATATT
Found at i:1195119 original size:35 final size:36
Alignment explanation
Indices: 1195073--1195141 Score: 131
Period size: 35 Copynumber: 1.9 Consensus size: 36
1195063 ATTCAACCAT
1195073 TTCAATATCCAACAAGCTTAAAACATAAT-AATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
1195108 TTCAATATCCAACAAGCTTAAAACATAATCAATA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATA
1195142 TCTAACAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 29 0.88
36 4 0.12
ACGTcount: A:0.52, C:0.19, G:0.03, T:0.26
Consensus pattern (36 bp):
TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
Found at i:1195139 original size:27 final size:28
Alignment explanation
Indices: 1195109--1195178 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
1195099 AATAATAAAT
*
1195109 TCAATATCCAACAAGCTT-AAAACATA-A
1 TCAATATCCAACAA-ATTCAAAACATATA
* *
1195136 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAACAAATTCAAAACATATA
*
1195164 TCAAAATCCAACAAA
1 TCAATATCCAACAAA
1195179 CTAAAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.06
27 20 0.56
28 14 0.39
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.23
Consensus pattern (28 bp):
TCAATATCCAACAAATTCAAAACATATA
Found at i:1196693 original size:15 final size:16
Alignment explanation
Indices: 1196673--1196705 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
1196663 AGTACCACTT
1196673 AAAATGAAAGCA-TGA
1 AAAATGAAAGCATTGA
1196688 AAAATGAAAGCATTGA
1 AAAATGAAAGCATTGA
1196704 AA
1 AA
1196706 GTTCAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.61, C:0.06, G:0.18, T:0.15
Consensus pattern (16 bp):
AAAATGAAAGCATTGA
Found at i:1199142 original size:25 final size:25
Alignment explanation
Indices: 1199103--1199154 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
1199093 AAAATGTCTG
1199103 CTGCTTAGAAGAGAACAGAAAATGT
1 CTGCTTAGAAGAGAACAGAAAATGT
**
1199128 CTGCTTAG-AGAAGAATGGAAAATGT
1 CTGCTTAGAAG-AGAACAGAAAATGT
1199153 CT
1 CT
1199155 TACCAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (25 bp):
CTGCTTAGAAGAGAACAGAAAATGT
Found at i:1201372 original size:14 final size:15
Alignment explanation
Indices: 1201352--1201392 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
1201342 TTTTGACATT
1201352 AAATTTAATTTTT-G
1 AAATTTAATTTTTAG
*
1201366 TAATTTAATTTTTAG
1 AAATTTAATTTTTAG
*
1201381 AAATTTAGTTTT
1 AAATTTAATTTT
1201393 AATATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (15 bp):
AAATTTAATTTTTAG
Found at i:1201451 original size:14 final size:14
Alignment explanation
Indices: 1201428--1201463 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
1201418 GTTTTAATTA
1201428 TTAATATTATTTTT
1 TTAATATTATTTTT
*
1201442 TTAATTTTATTTTT
1 TTAATATTATTTTT
*
1201456 GTAATATT
1 TTAATATT
1201464 TTGAAATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
TTAATATTATTTTT
Found at i:1213146 original size:14 final size:16
Alignment explanation
Indices: 1213114--1213151 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
1213104 GGAATTTTTA
*
1213114 TTTTATTTTTTGAATT
1 TTTTATTTTGTGAATT
*
1213130 TTTTATTTTGTGATTT
1 TTTTATTTTGTGAATT
1213146 TTTTAT
1 TTTTAT
1213152 AATTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (16 bp):
TTTTATTTTGTGAATT
Found at i:1222649 original size:16 final size:17
Alignment explanation
Indices: 1222630--1222663 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1222620 ATATAAAATT
1222630 TTAA-TAAATAAAAAAA
1 TTAATTAAATAAAAAAA
*
1222646 TTAATTAAATATAAAAA
1 TTAATTAAATAAAAAAA
1222663 T
1 T
1222664 AAAATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAATTAAATAAAAAAA
Found at i:1234565 original size:27 final size:27
Alignment explanation
Indices: 1234524--1234577 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1234514 TTACCCTTAA
**
1234524 CAATATACTGTATGTAGAAGATATTAG
1 CAATATACTCCATGTAGAAGATATTAG
1234551 CAATATACTCCATGTAGAAGATATTAG
1 CAATATACTCCATGTAGAAGATATTAG
1234578 GAAGAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (27 bp):
CAATATACTCCATGTAGAAGATATTAG
Found at i:1238725 original size:21 final size:23
Alignment explanation
Indices: 1238674--1238725 Score: 54
Period size: 26 Copynumber: 2.2 Consensus size: 23
1238664 TTCATGTGTA
1238674 ATATTTAATTTAAACTGTTTTAT
1 ATATTTAATTTAAACTGTTTTAT
*
1238697 ATGTTATTTACTTTAAA-T-TTTTAT
1 A---TATTTAATTTAAACTGTTTTAT
1238721 ATATT
1 ATATT
1238726 ATTTATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
21 4 0.16
23 1 0.04
24 7 0.28
25 1 0.04
26 12 0.48
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (23 bp):
ATATTTAATTTAAACTGTTTTAT
Found at i:1238747 original size:28 final size:24
Alignment explanation
Indices: 1238675--1238740 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
1238665 TCATGTGTAA
* *
1238675 TATTTAATTTAAACTGTTTTATATGT
1 TATTTATTTTAAA-T-TTTTATATAT
*
1238701 TATTTACTTTAAATTTTTATATAT
1 TATTTATTTTAAATTTTTATATAT
1238725 TATTTATTTTAAATTT
1 TATTTATTTTAAATTT
1238741 CTTTTTACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 24 0.65
25 1 0.03
26 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (24 bp):
TATTTATTTTAAATTTTTATATAT
Found at i:1238833 original size:26 final size:23
Alignment explanation
Indices: 1238772--1238841 Score: 63
Period size: 26 Copynumber: 2.9 Consensus size: 23
1238762 GAGCCTCTTA
1238772 ATATTTATTTTAAATT-TCTTTAT
1 ATATTTA-TTTAAATTGTCTTTAT
*
1238795 ATA-TTATCCTAAACTTGTCTTTACGT
1 ATATTTAT-TTAAA-TTGTCTTTA--T
1238821 ATATTTATTTAAAATTGTCTT
1 ATATTTATTT-AAATTGTCTT
1238842 ATACAACTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
21 1 0.03
22 7 0.18
23 5 0.13
24 6 0.16
26 12 0.32
27 7 0.18
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.56
Consensus pattern (23 bp):
ATATTTATTTAAATTGTCTTTAT
Found at i:1238980 original size:26 final size:27
Alignment explanation
Indices: 1238931--1238984 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
1238921 TATTATATAT
*
1238931 ATATATATATATATATTACTTATTTTA
1 ATATATATATATATATCACTTATTTTA
1238958 ATAT-TATATATATATCA-TCTATTTTA
1 ATATATATATATATATCACT-TATTTTA
1238984 A
1 A
1238985 ATTGATTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATATATATATATATCACTTATTTTA
Found at i:1246229 original size:37 final size:37
Alignment explanation
Indices: 1246179--1246254 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
1246169 TCTTTGGTGT
1246179 AGGAACATTGATCCTATTAAACTGGAATTTGATTCCA
1 AGGAACATTGATCCTATTAAACTGGAATTTGATTCCA
* * *
1246216 AGGAATATTGATCCTATTAGATTGGAATTTGATTCCA
1 AGGAACATTGATCCTATTAAACTGGAATTTGATTCCA
1246253 AG
1 AG
1246255 ACCAAATGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (37 bp):
AGGAACATTGATCCTATTAAACTGGAATTTGATTCCA
Found at i:1258614 original size:21 final size:22
Alignment explanation
Indices: 1258589--1258631 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1258579 TGGTTTCAAA
* *
1258589 TTTT-AGTAAAATTAATTTTAT
1 TTTTAAGTAAAATAAAATTTAT
1258610 TTTTAAGTAAAATAAAATTTAT
1 TTTTAAGTAAAATAAAATTTAT
1258632 AAATTTCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (22 bp):
TTTTAAGTAAAATAAAATTTAT
Found at i:1263360 original size:82 final size:80
Alignment explanation
Indices: 1263257--1263424 Score: 291
Period size: 80 Copynumber: 2.1 Consensus size: 80
1263247 GAAAAAAAGG
* *
1263257 TCACTAAGTTTACCATTTTGTTTAATGCCTTACCATAGTGTTTTTTTCTATGCTGGTAGTCATGT
1 TCACTAAGTTTACCATTTTGTTTAATGCCTTACCATAGTG--TTTGTCTATGCTGGTAGTCATGA
1263322 ATGCATGCATGATGTGA
64 ATGCATGCATGATGTGA
*
1263339 TCACTAAGTTTACCATTTTGTTTAATGCCTTACCATAGTGTTTGTCTATGCTGGTAGTTATGAAT
1 TCACTAAGTTTACCATTTTGTTTAATGCCTTACCATAGTGTTTGTCTATGCTGGTAGTCATGAAT
1263404 GCATGCATGATGTGA
66 GCATGCATGATGTGA
1263419 TCACTA
1 TCACTA
1263425 CAACACAGTA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
80 43 0.52
82 40 0.48
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.42
Consensus pattern (80 bp):
TCACTAAGTTTACCATTTTGTTTAATGCCTTACCATAGTGTTTGTCTATGCTGGTAGTCATGAAT
GCATGCATGATGTGA
Found at i:1267745 original size:17 final size:18
Alignment explanation
Indices: 1267720--1267761 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1267710 TGATAATATG
*
1267720 ATTAT-AATTATAATTAT
1 ATTATCAATTAAAATTAT
*
1267737 ATT-TCAATTAAAATTTT
1 ATTATCAATTAAAATTAT
1267754 ATTATCAA
1 ATTATCAA
1267762 AATTATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTATCAATTAAAATTAT
Found at i:1276293 original size:36 final size:35
Alignment explanation
Indices: 1276253--1276341 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 35
1276243 ACTCAAAATA
* *
1276253 TTAAAATATTATTTATATTAATCGTTTAAAATGTAT
1 TTAAAATATTATTTATATTAAT-ATTTAAAATATAT
* * * *
1276289 TTAAAATTTTATATAT-TTACTATTTAAGATATAT
1 TTAAAATATTATTTATATTAATATTTAAAATATAT
1276323 TTAAAA-ATTAATTTATATT
1 TTAAAATATT-ATTTATATT
1276342 TTATCTATTA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
33 2 0.05
34 21 0.49
35 6 0.14
36 14 0.33
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (35 bp):
TTAAAATATTATTTATATTAATATTTAAAATATAT
Found at i:1280920 original size:125 final size:125
Alignment explanation
Indices: 1280698--1280947 Score: 482
Period size: 125 Copynumber: 2.0 Consensus size: 125
1280688 CAAAAAATAC
*
1280698 ACAAACTTGCATTCGATTGGTAATCAATTAAACCATGACAGTGGGAAGAGACAACCTTTATACAA
1 ACAAACTCGCATTCGATTGGTAATCAATTAAACCATGACAGTGGGAAGAGACAACCTTTATACAA
*
1280763 ATAGTCTTACATTTGTATAACACCTAAAGGGGACTAAAGAGCTTTCCACAATTTTTTTTT
66 ATAGTCTTACATTTGTATAACACCTAAAGGGGACTAAAGAGCTTTCAACAATTTTTTTTT
1280823 ACAAACTCGCATTCGATTGGTAATCAATTAAACCATGACAGTGGGAAGAGACAACCTTTATACAA
1 ACAAACTCGCATTCGATTGGTAATCAATTAAACCATGACAGTGGGAAGAGACAACCTTTATACAA
1280888 ATAGTCTTACATTTGTATAACACCTAAAGGGGACTAAAGAGCTTTCAACAATTTTTTTTT
66 ATAGTCTTACATTTGTATAACACCTAAAGGGGACTAAAGAGCTTTCAACAATTTTTTTTT
1280948 TCTGTTTTAT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 123 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (125 bp):
ACAAACTCGCATTCGATTGGTAATCAATTAAACCATGACAGTGGGAAGAGACAACCTTTATACAA
ATAGTCTTACATTTGTATAACACCTAAAGGGGACTAAAGAGCTTTCAACAATTTTTTTTT
Found at i:1282392 original size:19 final size:19
Alignment explanation
Indices: 1282368--1282405 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
1282358 TTTATCTACA
1282368 AAACTTAAAT-TCGAGACCT
1 AAACTTAAATCT-GAGACCT
1282387 AAACTTAAATCTGAGACCT
1 AAACTTAAATCTGAGACCT
1282406 TACTCATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
AAACTTAAATCTGAGACCT
Found at i:1283684 original size:20 final size:20
Alignment explanation
Indices: 1283640--1283685 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
1283630 TTTTTATGAT
*
1283640 ATTTTAAATAATTTTCTATA
1 ATTTTAAATAAATTTCTATA
*
1283660 GTTTTAAATAAATTTC-ATAA
1 ATTTTAAATAAATTTCTAT-A
1283680 ATTTTA
1 ATTTTA
1283686 TAATTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTAAATAAATTTCTATA
Found at i:1283717 original size:51 final size:51
Alignment explanation
Indices: 1283677--1283789 Score: 133
Period size: 51 Copynumber: 2.2 Consensus size: 51
1283667 ATAAATTTCA
1283677 TAAATTTT-ATA-ATTTTATAATTTATATATTTGTTATTTTAATAAAATTT
1 TAAATTTTAATACATTTTATAATTTATATATTTGTTATTTTAATAAAATTT
* * * *
1283726 TCAATTTTAATACTTTTTATAATTTTTATATTT-TCATTTATAATAAATATTT
1 TAAATTTTAATACATTTTATAATTTATATATTTGTTATTT-TAATAAA-ATTT
* *
1283778 AAAATATTAATA
1 TAAATTTTAATA
1283790 TAATTACAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
49 7 0.13
50 8 0.15
51 25 0.47
52 13 0.25
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.57
Consensus pattern (51 bp):
TAAATTTTAATACATTTTATAATTTATATATTTGTTATTTTAATAAAATTT
Found at i:1283751 original size:9 final size:9
Alignment explanation
Indices: 1283575--1283759 Score: 55
Period size: 9 Copynumber: 20.4 Consensus size: 9
1283565 CNAAATACTT
*
1283575 TTTTTATGA
1 TTTTTATAA
*
1283584 TTTATATAA
1 TTTTTATAA
*
1283593 TTCTTA-AA
1 TTTTTATAA
1283601 TTTGTTAT-A
1 TTT-TTATAA
*
1283610 TTTTTTTGCACA
1 TTTTTAT--A-A
*
1283622 TTTCTAT-A
1 TTTTTATAA
1283630 TTTTTATGATA
1 TTTTTAT-A-A
*
1283641 TTTTAAATAA
1 TTTT-TATAA
*
1283651 TTTTCTATAG
1 TTTT-TATAA
*
1283661 TTTTAAATAA
1 TTTT-TATAA
* *
1283671 ATTTCATAA
1 TTTTTATAA
*
1283680 ATTTTATAA
1 TTTTTATAA
1283689 -TTTTATAA
1 TTTTTATAA
*
1283697 TTTATAT-A
1 TTTTTATAA
*
1283705 TTTGT-T-A
1 TTTTTATAA
*
1283712 TTTTAATAAA
1 TTTTTAT-AA
* *
1283722 ATTTT-CAA
1 TTTTTATAA
* *
1283730 TTTTAATAC
1 TTTTTATAA
1283739 TTTTTATAA
1 TTTTTATAA
1283748 TTTTTAT-A
1 TTTTTATAA
1283756 TTTT
1 TTTT
1283760 CATTTATAAT
Statistics
Matches: 129, Mismatches: 32, Indels: 31
0.67 0.17 0.16
Matches are distributed among these distances:
7 5 0.04
8 38 0.29
9 50 0.39
10 22 0.17
11 6 0.05
12 8 0.06
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:1285456 original size:7 final size:7
Alignment explanation
Indices: 1285444--1285468 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1285434 TAAATTTTTG
1285444 AAATCTT
1 AAATCTT
1285451 AAATCTT
1 AAATCTT
1285458 AAATCTT
1 AAATCTT
1285465 AAAT
1 AAAT
1285469 ATTATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATCTT
Found at i:1289347 original size:18 final size:17
Alignment explanation
Indices: 1289326--1289359 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1289316 GAAATTTCTT
*
1289326 TTTTTTCTTTCTTTTTCG
1 TTTTTTATTT-TTTTTCG
1289344 TTTTTTATTTTTTTTC
1 TTTTTTATTTTTTTTC
1289360 TCTCTCTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTTTATTTTTTTTCG
Found at i:1290319 original size:18 final size:18
Alignment explanation
Indices: 1290296--1290359 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
1290286 TCTAATACTA
1290296 TTATTATATATATATGTT
1 TTATTATATATATATGTT
** *
1290314 TTATTAT-CCT-TAT-TA
1 TTATTATATATATATGTT
1290329 TTATTAATATTAGTATATGTT
1 TTATT-ATA-TA-TATATGTT
1290350 TTATTATATA
1 TTATTATATA
1290360 GGTATATATA
Statistics
Matches: 34, Mismatches: 6, Indels: 11
0.67 0.12 0.22
Matches are distributed among these distances:
15 6 0.18
16 5 0.15
17 1 0.03
18 7 0.21
19 3 0.09
20 6 0.18
21 6 0.18
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (18 bp):
TTATTATATATATATGTT
Found at i:1305964 original size:18 final size:18
Alignment explanation
Indices: 1305941--1305990 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
1305931 CGTTTACAAT
1305941 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
* *
1305959 ACTATTTACGTATACGGT
1 ACTATTCACGTATACGGC
*
1305977 ACTGTTCACGTATA
1 ACTATTCACGTATA
1305991 TAGTAGTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:1318488 original size:17 final size:16
Alignment explanation
Indices: 1318466--1318507 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
1318456 TTAATTAAAT
*
1318466 AATTAAATATTTAAAAA
1 AATTAAAT-TTGAAAAA
1318483 AATT-AATTTGAAAAA
1 AATTAAATTTGAAAAA
1318498 ATATTAAATT
1 A-ATTAAATT
1318508 CTCAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AATTAAATTTGAAAAA
Found at i:1322596 original size:25 final size:25
Alignment explanation
Indices: 1322555--1322639 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
1322545 ACTTAATCAG
*
1322555 TTTAATTACTAGTTAATTCTATTTAA
1 TTTAATTACTA-ATAATTCTATTTAA
* *
1322581 -TTAATTATTAAATAATTTTATTTTTAA
1 TTTAATTACT-AATAATTCTA--TTTAA
* **
1322608 TTTAATTACTAATATTTCTATTTTT
1 TTTAATTACTAATAATTCTATTTAA
1322633 TTTAATT
1 TTTAATT
1322640 TCGTACTCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
25 25 0.53
26 1 0.02
27 13 0.28
28 8 0.17
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (25 bp):
TTTAATTACTAATAATTCTATTTAA
Found at i:1324649 original size:184 final size:185
Alignment explanation
Indices: 1324340--1324710 Score: 681
Period size: 184 Copynumber: 2.0 Consensus size: 185
1324330 GTTAGACAAA
*
1324340 TGACAGTGCCTATCATCGTTGAAACACCACCGGCCACCAACAGTTTCTTTTAAAAAGCGGGTAGC
1 TGACAGTGCCTATCATCGTTGAAACACCACCGACCACCAACAGTTTCTTTTAAAAAGCGGGTAGC
* *
1324405 TCTTCGTTGACTTCTTAATCTGTTCCTGTTTTGAGAATTTCAGAATAATAAATAATTTCATGAGT
66 TCTTCGTTGACTTATTAATCTGTTCCTGTTTTGAGAATTTAAGAATAATAAATAATTTCATGAGT
1324470 CGGTTTGGACTCGTATTATCTTAAGTTTTATATGTTTTTTTATTTG-TTTTTCAT
131 CGGTTTGGACTCGTATTATCTTAAGTTTTATATGTTTTTTTATTTGTTTTTTCAT
* *
1324524 TGACAGTGCCTATCATCGTTGAAACACCACCGACCACCGACAGTTTCTTTTAAAAAGTGGGTAGC
1 TGACAGTGCCTATCATCGTTGAAACACCACCGACCACCAACAGTTTCTTTTAAAAAGCGGGTAGC
*
1324589 TCTTCGTTGACTTATTAATCTGTTTCTGTTTTGAGAATTTAAGAATAATAAATAATTTCATGAGT
66 TCTTCGTTGACTTATTAATCTGTTCCTGTTTTGAGAATTTAAGAATAATAAATAATTTCATGAGT
1324654 CGGTTTGGACTCGTATTATCTTAAGTTTTATATGTTTTTTTATTTGTTTTTTCAT
131 CGGTTTGGACTCGTATTATCTTAAGTTTTATATGTTTTTTTATTTGTTTTTTCAT
1324709 TG
1 TG
1324711 TTTAATAAGT
Statistics
Matches: 180, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
184 170 0.94
185 10 0.06
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (185 bp):
TGACAGTGCCTATCATCGTTGAAACACCACCGACCACCAACAGTTTCTTTTAAAAAGCGGGTAGC
TCTTCGTTGACTTATTAATCTGTTCCTGTTTTGAGAATTTAAGAATAATAAATAATTTCATGAGT
CGGTTTGGACTCGTATTATCTTAAGTTTTATATGTTTTTTTATTTGTTTTTTCAT
Done.