Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 110 of 141
Found at i:31904275 original size:40 final size:40
Alignment explanation
Indices: 31904224--31904500 Score: 446
Period size: 40 Copynumber: 6.9 Consensus size: 40
31904214 ATAACCGCAA
* * * *
31904224 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
31904264 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
31904304 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
31904344 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
31904384 GCACAAATGCCTTCGGGTCGTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
31904424 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
31904464 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
31904501 ATGCTCATGC
Statistics
Matches: 218, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:31920175 original size:20 final size:19
Alignment explanation
Indices: 31920117--31920291 Score: 59
Period size: 19 Copynumber: 9.0 Consensus size: 19
31920107 AAGTGAAAAT
*
31920117 TAGGGGTACTAAAGTACAA
1 TAGGGGTACCAAAGTACAA
* * ** * *
31920136 CAGGGGCATGAATGTGCAA
1 TAGGGGTACCAAAGTACAA
31920155 TTAGGGGTACCAAAGTACAA
1 -TAGGGGTACCAAAGTACAA
* * * ***
31920175 TAGGGGCACGAATGTGTGA
1 TAGGGGTACCAAAGTACAA
**
31920194 TCAGGGGTACTGAAGTACAA
1 T-AGGGGTACCAAAGTACAA
* * * *
31920214 CAGGGGCA-CATATGTGCAA
1 TAGGGGTACCA-AAGTACAA
*
31920233 TCAGGGGTACCAAAGTACAG
1 T-AGGGGTACCAAAGTACAA
* *
31920253 TA-AGG-ACACATATGTACAA
1 TAGGGGTAC-CA-AAGTACAA
*
31920272 TTAGGGGTACCGAAGTACAA
1 -TAGGGGTACCAAAGTACAA
31920292 CAGTGGCACG
Statistics
Matches: 104, Mismatches: 42, Indels: 19
0.63 0.25 0.12
Matches are distributed among these distances:
17 2 0.02
18 4 0.04
19 46 0.44
20 45 0.43
21 5 0.05
22 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (19 bp):
TAGGGGTACCAAAGTACAA
Found at i:31920210 original size:78 final size:77
Alignment explanation
Indices: 31920118--31920355 Score: 280
Period size: 78 Copynumber: 3.1 Consensus size: 77
31920108 AGTGAAAATT
* *
31920118 AGGGGTACTAAAGTACAACAGGGGCATGAATGTGCAATTAGGGGTACCAAAGTACAATAGGGGCA
1 AGGGGTACTGAAGTACAACAGGGGCA-GAATGTGCAATCAGGGGTACCAAAGTACAATAGGGGCA
31920183 CGAATGTGTGATC
65 CGAATGTGTGATC
* * * *
31920196 AGGGGTACTGAAGTACAACAGGGGCACATATGTGCAATCAGGGGTACCAAAGTACAGTAAGGACA
1 AGGGGTACTGAAGTACAACAGGGGCAGA-ATGTGCAATCAGGGGTACCAAAGTACAATAGGGGCA
*** *
31920261 C-ATATGTACAATT
65 CGA-ATGTGTGATC
* * * * * *
31920274 AGGGGTACCGAAGTACAACAGTGGCACGTATGTGTAATCAGGGGTATCGAAGTACAATAGGGGCA
1 AGGGGTACTGAAGTACAACAGGGGCA-GAATGTGCAATCAGGGGTACCAAAGTACAATAGGGGCA
*
31920339 CGTATGTGTGATC
65 CGAATGTGTGATC
31920352 AGGG
1 AGGG
31920356 AATAATTACA
Statistics
Matches: 131, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
77 2 0.02
78 129 0.98
ACGTcount: A:0.34, C:0.15, G:0.32, T:0.20
Consensus pattern (77 bp):
AGGGGTACTGAAGTACAACAGGGGCAGAATGTGCAATCAGGGGTACCAAAGTACAATAGGGGCAC
GAATGTGTGATC
Found at i:31920339 original size:39 final size:39
Alignment explanation
Indices: 31920100--31920355 Score: 242
Period size: 39 Copynumber: 6.5 Consensus size: 39
31920090 ATGTAATCAA
* * * **
31920100 GGCACGTAAGTGAAAATTAGGGGTACTAAAGTACAACAGG
1 GGCACGTATGTG-CAATCAGGGGTACCGAAGTACAACAGG
* * * * *
31920140 GGCATGAATGTGCAATTAGGGGTACCAAAGTACAATAGG
1 GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
* ** *
31920179 GGCACGAATGTGTGATCAGGGGTACTGAAGTACAACAGG
1 GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
* * ** *
31920218 GGCACATATGTGCAATCAGGGGTACCAAAGTACAGTAAG
1 GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
* * * * *
31920257 GACACATATGTACAATTAGGGGTACCGAAGTACAACAGT
1 GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
* * *
31920296 GGCACGTATGTGTAATCAGGGGTATCGAAGTACAATAGG
1 GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
**
31920335 GGCACGTATGTGTGATCAGGG
1 GGCACGTATGTGCAATCAGGG
31920356 AATAATTACA
Statistics
Matches: 177, Mismatches: 39, Indels: 1
0.82 0.18 0.00
Matches are distributed among these distances:
39 168 0.95
40 9 0.05
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.20
Consensus pattern (39 bp):
GGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGG
Found at i:31948600 original size:11 final size:10
Alignment explanation
Indices: 31948582--31948607 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
31948572 TGAATTTCTC
31948582 TCTTTTTTTT
1 TCTTTTTTTT
31948592 TCTTTTTTTT
1 TCTTTTTTTT
31948602 TCTTTT
1 TCTTTT
31948608 CTTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:31952924 original size:30 final size:30
Alignment explanation
Indices: 31952890--31952947 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
31952880 TTCGAGCTTG
31952890 GGGAC-AAATATGTAATTATACAAAAGTTTA
1 GGGACAAAAT-TGTAATTATACAAAAGTTTA
* *
31952920 GGGACAAAATTGTAATTTTATAAAAGTT
1 GGGACAAAATTGTAATTATACAAAAGTT
31952948 GAGTCGAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (30 bp):
GGGACAAAATTGTAATTATACAAAAGTTTA
Found at i:31953319 original size:51 final size:50
Alignment explanation
Indices: 31953237--31953740 Score: 188
Period size: 51 Copynumber: 9.7 Consensus size: 50
31953227 GATGAACACG
** *
31953237 TGTGTAGTACTGTGTGGAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAAT-ATGGTCACA
* * * * * *
31953288 TGTGTAGTACTAAGTGAAGGCTATTATGTGTACCGA-AATTCTTTGAG-CACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAA--ATATG-GTCACA
** * * * * *
31953339 TGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGGTTACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA-TATGGTCACA
* * * * *
31953390 TGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGA-AAAGCTTTGGTGCTTTGAGCA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA--TATGGT-C----A-CA
** * * * * * *
31953447 CGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACA
1 --TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA-TATGGTCACA
* * * * * *
31953500 TGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGA-AAAGCTTTGGTCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA--TATGGTCACA
* * * * *
31953551 TATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAA-ACTTGATCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTA-TCGATAAATA--TGGTCACA
* * *
31953601 TGTGTAGTACTATGTATATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGATCACG
1 TGTGTAGTAC----TA-A-GTGAAGGCTACTACGTGTATC-GATAAATA-TGGTCACA
* * ** *
31953656 TGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTAATCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATC-GATAAATA-TGGTCACA
* *
31953705 TGTGTAGTATTATGTGAAGGCTACTACGTGTATCGA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGA
31953741 ATGATAAAAA
Statistics
Matches: 347, Mismatches: 76, Indels: 61
0.72 0.16 0.13
Matches are distributed among these distances:
49 65 0.19
50 28 0.08
51 165 0.48
52 4 0.01
53 2 0.01
54 3 0.01
55 19 0.05
56 25 0.07
57 2 0.01
59 31 0.09
60 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAATATGGTCACA
Found at i:31953409 original size:102 final size:102
Alignment explanation
Indices: 31953233--31953580 Score: 457
Period size: 102 Copynumber: 3.3 Consensus size: 102
31953223 TGTCGATGAA
* * * * *
31953233 CACGTGTGTAGTACTGTGTGGAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGGATCGGTAAACT-ACGGTTACATGTGTAGTA
** *
31953297 CTAAGTGAAGGCTATTATGTGTACCGAAATTCTTTGAG
65 CTAAGTGAAGGCTACAATGGGTACCGAAATTCTTTGAG
*
31953335 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGGTTACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGGATCGGTAAACTACGGTTACATGTGTAGTAC
31953400 TAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTGCTTTGAG
66 TAAGTGAAGGCTACAATGGGTACCG-AAA----T--T-CTTTGAG
* *
31953445 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGGATCGGTAAACTACGGTTACATGTGTAGTAC
**
31953510 TAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTG-G
66 TAAGTGAAGGCTACAATGGGTACCGAAATTCTTTGAG
* *
31953546 TCACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 -CACGTGTGTAGTACTGTGTGAAGGCTACTACGTG
31953581 AGCCGTAAAA
Statistics
Matches: 221, Mismatches: 15, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
101 1 0.00
102 115 0.52
103 4 0.02
107 1 0.00
109 4 0.02
110 96 0.43
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGGATCGGTAAACTACGGTTACATGTGTAGTAC
TAAGTGAAGGCTACAATGGGTACCGAAATTCTTTGAG
Found at i:31953521 original size:110 final size:110
Alignment explanation
Indices: 31953328--31953546 Score: 429
Period size: 110 Copynumber: 2.0 Consensus size: 110
31953318 TACCGAAATT
*
31953328 CTTTGAGCACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGGTTACATGT
1 CTTTGAGCACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACATGT
31953393 GTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTG
66 GTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTG
31953438 CTTTGAGCACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACATGT
1 CTTTGAGCACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACATGT
31953503 GTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGT
66 GTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGT
31953547 CACGTATGTA
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (110 bp):
CTTTGAGCACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGTAAACTACGATTACATGT
GTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTG
Found at i:31953689 original size:49 final size:49
Alignment explanation
Indices: 31953445--31953734 Score: 287
Period size: 49 Copynumber: 5.7 Consensus size: 49
31953435 GTGCTTTGAG
* * * *
31953445 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGGATCGGT-AAACTACGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGT-GAACCGTAAAACT--GAT
* * * * * * * *
31953496 TACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C--TGAT
* *
31953547 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAC-TGAT
*
31953597 CACGTGTGTAGTACTATGTATATGTGAAGGCTACTACGTGAACTGTAAAACTGAT
1 CACGTGTGTAGTAC------TATGTGAAGGCTACTACGTGAACCGTAAAACTGAT
* *
31953652 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAACTAAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTGAT
*
31953701 CACGTGTGTAGTATTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
31953735 TATCGAATGA
Statistics
Matches: 201, Mismatches: 27, Indels: 24
0.80 0.11 0.10
Matches are distributed among these distances:
49 67 0.33
50 23 0.11
51 59 0.29
52 4 0.02
53 1 0.00
55 18 0.09
56 29 0.14
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTGAT
Found at i:31960703 original size:30 final size:30
Alignment explanation
Indices: 31960669--31960725 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
31960659 TCGAGCTTGA
31960669 GGACAAAGA-TGTAATTCTACAAAAGTTTAG
1 GGACAAA-ATTGTAATTCTACAAAAGTTTAG
* *
31960699 GGACAAAATTGTAATTTTATAAAAGTT
1 GGACAAAATTGTAATTCTACAAAAGTT
31960726 GAGTCGAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.32
Consensus pattern (30 bp):
GGACAAAATTGTAATTCTACAAAAGTTTAG
Found at i:31961187 original size:102 final size:102
Alignment explanation
Indices: 31961011--31961353 Score: 335
Period size: 102 Copynumber: 3.4 Consensus size: 102
31961001 TGTCGATGAA
* * *
31961011 CACGTGTGTAGTACTGTGTGGAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAACGGTCACATGTGTAGTAC
* * * * *
31961076 TGAGTGAAGGCTACTATGTGTACCGAAATGCTTTGAG
66 TAAGTGAAGGCTACAATGGGTACCGAAAAGCTCTGAG
* * * * *
31961113 CACGTGTGTAGTACTTTGTGAATGCTACTACGTGTATTGGTAAACT-ACGGTTACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAACGGTCACATGTGTAGTA
**
31961177 CTAAGTGAAGGCTACAATGGGTACCGAAAAGCTCTGTT
65 CTAAGTGAAGGCTACAATGGGTACCGAAAAGCTCTGAG
* * * *
31961215 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-T-AA-AACTTGATCACGTGTGTAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGATAAATAAC--GGTCACATGTGTAG
** * * * *
31961276 TACTATCTGAAGGCTACTACGTGG-ACTGTAAAA---CTGAT
63 TACTAAGTGAAGGCTACAATG-GGTACCG-AAAAGCTCTGAG
*
31961314 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
31961354 ATGATAAAAA
Statistics
Matches: 201, Mismatches: 31, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
99 40 0.20
100 3 0.01
101 33 0.16
102 124 0.62
103 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAACGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGGGTACCGAAAAGCTCTGAG
Found at i:31961338 original size:49 final size:51
Alignment explanation
Indices: 31961011--31961347 Score: 248
Period size: 51 Copynumber: 6.7 Consensus size: 51
31961001 TGTCGATGAA
* * * * * *
31961011 CACGTGTGTAGTACTGTGTGGAGGCTACTACGTGTA-TCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGGAGCCG-TAAA-ACTTGAT
* * * * *
31961062 CACATGTGTAGTACTGA-GTGAAGGCTACTATGTGTA-CCG-AAATGCTTTGAG
1 CACGTGTGTAGTACT-ATGTGAAGGCTACTACGTGGAGCCGTAAA-AC-TTGAT
* * * *** * *
31961113 CACGTGTGTAGTACTTTGTGAATGCTACTACGTGTATTGGT-AAACTACGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGGAGCCGTAAAACT-TGAT
* * * * * *
31961164 TACATGTGTAGTACTAAGTGAAGGCTACAATG-GGTA-CCG-AAAAGCTCTGTT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGG-AGCCGTAAAA-CT-TGAT
*
31961215 CACGTATGTAGTACTATGTGAAGGCTACTACGT-GAGCCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGGAGCCGTAAAACTTGAT
* *
31961265 CACGTGTGTAGTACTATCTGAAGGCTACTACGTGGA-CTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGGAGCCGTAAAACTTGAT
*
31961314 CACGTGTGTAGTACTATGTAAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
31961348 TATCGAATGA
Statistics
Matches: 228, Mismatches: 44, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
49 40 0.18
50 49 0.21
51 132 0.58
52 7 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGGAGCCGTAAAACTTGAT
Found at i:31964192 original size:136 final size:138
Alignment explanation
Indices: 31963927--31964198 Score: 467
Period size: 136 Copynumber: 2.0 Consensus size: 138
31963917 AAGGAATTAC
* *
31963927 ATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGGCCAAAATTAATTAATATAAC
1 ATTCTGTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAAC
* *
31963992 ATTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATTAAATTCATATA
66 ATTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTACGAATCAAATTCATATA
31964057 TTAATTGT
131 TTAATTGT
* *
31964065 ATTCTGTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTT-ACCGAAATTAGTTAATATAAC
1 ATTCTGTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAAC
*
31964129 -TTTTTTATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTACGAATCAAATTCATATA
66 ATTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTACGAATCAAATTCATATA
31964193 TTAATT
131 TTAATT
31964199 ATATCTATGT
Statistics
Matches: 127, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
136 67 0.53
137 18 0.14
138 42 0.33
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (138 bp):
ATTCTGTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAAC
ATTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTACGAATCAAATTCATATA
TTAATTGT
Found at i:31966482 original size:20 final size:20
Alignment explanation
Indices: 31966457--31966497 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
31966447 GACATATGGT
*
31966457 CGTGTCTGTGCCCGTGTGGA
1 CGTGTCTATGCCCGTGTGGA
31966477 CGTGTCTATGCCCGTGTGGA
1 CGTGTCTATGCCCGTGTGGA
31966497 C
1 C
31966498 TAAAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.07, C:0.27, G:0.37, T:0.29
Consensus pattern (20 bp):
CGTGTCTATGCCCGTGTGGA
Found at i:31967618 original size:25 final size:25
Alignment explanation
Indices: 31967590--31967656 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
31967580 TTGTACATGT
* *
31967590 ATGCTCACACAAGCTGTAAATCAAA
1 ATGCTCACACGAGCTATAAATCAAA
*
31967615 ATGCTCACACGAGCTATAAATCAGA
1 ATGCTCACACGAGCTATAAATCAAA
31967640 ATGCTCACACGAGCTAT
1 ATGCTCACACGAGCTAT
31967657 GGAGTACCCG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (25 bp):
ATGCTCACACGAGCTATAAATCAAA
Found at i:31981613 original size:39 final size:39
Alignment explanation
Indices: 31981559--31981760 Score: 289
Period size: 39 Copynumber: 5.2 Consensus size: 39
31981549 AATGGGATAA
*
31981559 TGATTCTACTAAAAGTATGCTCAATCGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* * *
31981598 TGATTCTATTGAAAGTATACTCAATCGAGCCATACCCAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* * * *
31981637 T-ATTCTATTGAATGTATGCTCAATCGAGTCATACTTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* *
31981675 TGATTCTACTAAAAGTATGCTCAATTGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* *
31981714 TGATTCTACTGAAAGTATGCTCAATCAAGCCATACCCAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
31981753 TGATTCTA
1 TGATTCTA
31981761 GAGAAATTTG
Statistics
Matches: 143, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 33 0.23
39 110 0.77
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (39 bp):
TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
Found at i:31981690 original size:77 final size:78
Alignment explanation
Indices: 31981559--31981760 Score: 289
Period size: 77 Copynumber: 2.6 Consensus size: 78
31981549 AATGGGATAA
* * *
31981559 TGATTCTACTAAAAGTATGCTCAATCGAGCCATACCTACTGATTCTATTGAAAGTATACTCAATC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTACTGATTCTACTAAAAGTATACTCAATC
31981624 GAGCCATACCCAC
66 GAGCCATACCCAC
* * * * * *
31981637 T-ATTCTATTGAATGTATGCTCAATCGAGTCATACTTACTGATTCTACTAAAAGTATGCTCAATT
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTACTGATTCTACTAAAAGTATACTCAATC
*
31981701 GAGCCATACCTAC
66 GAGCCATACCCAC
* *
31981714 TGATTCTACTGAAAGTATGCTCAATCAAGCCATACCCACTGATTCTA
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTACTGATTCTA
31981761 GAGAAATTTG
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
77 67 0.63
78 40 0.37
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (78 bp):
TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTACTGATTCTACTAAAAGTATACTCAATC
GAGCCATACCCAC
Found at i:31993507 original size:56 final size:56
Alignment explanation
Indices: 31993441--31993669 Score: 204
Period size: 56 Copynumber: 4.1 Consensus size: 56
31993431 TGATATACAA
* * * *
31993441 GAAAAGAAGGAAAAAAAATTTTGGGTGTTGGCCTGTCAATGGCCGACACCCAGTAC
1 GAAAAAAAGGAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTAC
* * * *
31993497 GAAAAAAAGGAAAAAAAAATTTAGGTGCTAGCCTATCAATGGTCGGCACCCAGT--
1 GAAAAAAAGGAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTAC
* * * ** * *
31993551 -----ATAGTAAAAAAAA-TTTGAGTTTTGGTCTATCAATGGCCGGCACCAGAGTAC
1 GAAAAAAAGGAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCGGCACC-CAGTAC
* *
31993602 GAAAAAAAAGAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC
1 G-AAAAAAAGGAAAAAAAA-TTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTAC
31993660 AGTAAAAAAA
1 -G-AAAAAAA
31993670 ATTTACTTTT
Statistics
Matches: 134, Mismatches: 27, Indels: 21
0.74 0.15 0.12
Matches are distributed among these distances:
48 24 0.18
49 14 0.10
56 46 0.34
57 11 0.08
58 5 0.04
59 34 0.25
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.21
Consensus pattern (56 bp):
GAAAAAAAGGAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTAC
Found at i:31993620 original size:59 final size:60
Alignment explanation
Indices: 31993556--31993670 Score: 135
Period size: 59 Copynumber: 1.9 Consensus size: 60
31993546 CCAGTATAGT
** * *
31993556 AAAAAAAATTTGAGTTTTGGTCTATCAATGGCCGGCACCAGAGTAC-G-AAAAAAAAGAAA
1 AAAAAAAATTTGAGTGCTGGCCTATCAATGGCCGGCACC-CAGTACAGTAAAAAAAAGAAA
** * *
31993615 AAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAGTAAAAAAAA
1 AAAAAAAATTTGAGTGCTGGCCTATCAATGGCCGGCACCCAGTACAGTAAAAAAAA
31993671 TTTACTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
58 5 0.11
59 33 0.72
60 8 0.17
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.21
Consensus pattern (60 bp):
AAAAAAAATTTGAGTGCTGGCCTATCAATGGCCGGCACCCAGTACAGTAAAAAAAAGAAA
Found at i:31993651 original size:107 final size:104
Alignment explanation
Indices: 31993451--31993673 Score: 302
Period size: 107 Copynumber: 2.1 Consensus size: 104
31993441 GAAAAGAAGG
* * *
31993451 AAAAAAAATTTTGGGTGTTGGCCTGTCAATGGCCGACACCCAGTACGAAAAAAAGGAAAAAAAAA
1 AAAAAAAA-TTTGAGTGTTGGCCTATCAATGGCCGACACCCAGTACGAAAAAAAAGAAAAAAAAA
* *
31993516 TTTAGGTGCTAGCCTATCAATGGTCGGCACCCAGTATAGT
65 TTTAGGTGCTAGCCTATCAATGGCCGGCACCCAGTACAGT
* * * *
31993556 AAAAAAAATTTGAGTTTTGGTCTATCAATGGCCGGCACCAGAGTACGAAAAAAAAGAAAAAAAAA
1 AAAAAAAATTTGAGTGTTGGCCTATCAATGGCCGACACC-CAGTACGAAAAAAAAGAAAAAAAAA
* * *
31993621 TTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAGT
65 --TTTAGGTGCTAGCCTATCAATGGCCGGCACCCAGTACAGT
31993663 AAAAAAAATTT
1 AAAAAAAATTT
31993674 ACTTTTTTTC
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
104 26 0.25
105 31 0.30
107 46 0.45
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (104 bp):
AAAAAAAATTTGAGTGTTGGCCTATCAATGGCCGACACCCAGTACGAAAAAAAAGAAAAAAAAAT
TTAGGTGCTAGCCTATCAATGGCCGGCACCCAGTACAGT
Found at i:31994170 original size:56 final size:58
Alignment explanation
Indices: 31994101--31994215 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 58
31994091 TGATATACAA
31994101 AAAAGAAGG-AAAAAAA-TTTTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTACG
1 AAAAGAAGGAAAAAAAATTTTTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTACG
* *
31994157 AAAAG-AGGAAAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGTCGGCACCCAGTAC
1 AAAAGAAGG-AAAAAAAA--TTTTTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTAC
31994216 AGTAAAAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
55 3 0.06
56 5 0.10
57 7 0.13
60 37 0.71
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (58 bp):
AAAAGAAGGAAAAAAAATTTTTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTACG
Found at i:31995925 original size:18 final size:18
Alignment explanation
Indices: 31995902--31995936 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31995892 TTTTGAGCTA
31995902 AATAAAGTGAGTTATTCG
1 AATAAAGTGAGTTATTCG
*
31995920 AATAAATTGAGTTATTC
1 AATAAAGTGAGTTATTC
31995937 TAGGCAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (18 bp):
AATAAAGTGAGTTATTCG
Found at i:32000866 original size:19 final size:19
Alignment explanation
Indices: 32000814--32000852 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32000804 ATACCTTCTT
32000814 TCTAAGTATAACCTTTTGC
1 TCTAAGTATAACCTTTTGC
32000833 TCTAAGTATAACCTTTTGC
1 TCTAAGTATAACCTTTTGC
32000852 T
1 T
32000853 ACAAGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.44
Consensus pattern (19 bp):
TCTAAGTATAACCTTTTGC
Found at i:32004340 original size:21 final size:21
Alignment explanation
Indices: 32004311--32004376 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
32004301 TTGTCCTTGG
* *
32004311 TGTCACGACACCACTAGAGGA
1 TGTCGCGACACCACTGGAGGA
32004332 TGTCGCGACACCACTGGAGGA
1 TGTCGCGACACCACTGGAGGA
32004353 TGTCGCGACACCACTGGAGGA
1 TGTCGCGACACCACTGGAGGA
32004374 TGT
1 TGT
32004377 TACGATACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.26, C:0.27, G:0.30, T:0.17
Consensus pattern (21 bp):
TGTCGCGACACCACTGGAGGA
Found at i:32013123 original size:37 final size:37
Alignment explanation
Indices: 32013061--32013193 Score: 157
Period size: 37 Copynumber: 3.6 Consensus size: 37
32013051 ACTCCTTGTT
*
32013061 TTGGCGTGTTTAT-GGTTGGACTAGCTCTT-CGGAGAAA
1 TTGGCGTG-TTATCGGTTGGAATAGCTCTTAC-GAGAAA
* * *
32013098 TTGGCGTGTTATCGGATGGATTAGCTCTTACGAG-CA
1 TTGGCGTGTTATCGGTTGGAATAGCTCTTACGAGAAA
* *
32013134 TCTGGCATGTTATCGGGTGGAATAGCTCTTACGAGAAA
1 T-TGGCGTGTTATCGGTTGGAATAGCTCTTACGAGAAA
32013172 TTGGCGTGTT-TCGGTTGGAATA
1 TTGGCGTGTTATCGGTTGGAATA
32013194 TCTATGTACT
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
36 17 0.20
37 63 0.76
38 3 0.04
ACGTcount: A:0.20, C:0.14, G:0.32, T:0.34
Consensus pattern (37 bp):
TTGGCGTGTTATCGGTTGGAATAGCTCTTACGAGAAA
Found at i:32020619 original size:25 final size:25
Alignment explanation
Indices: 32020544--32020622 Score: 122
Period size: 25 Copynumber: 3.2 Consensus size: 25
32020534 TCACACGGTT
32020544 GTGTCACATGCCCGTGTGTCGGGCC
1 GTGTCACATGCCCGTGTGTCGGGCC
* * *
32020569 ATGTCACACGCCCATGTGTCGGGCC
1 GTGTCACATGCCCGTGTGTCGGGCC
*
32020594 GTGTCACATACCCGTGTGTCGGGCC
1 GTGTCACATGCCCGTGTGTCGGGCC
32020619 GTGT
1 GTGT
32020623 AACTCTCGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.24
Consensus pattern (25 bp):
GTGTCACATGCCCGTGTGTCGGGCC
Found at i:32026051 original size:257 final size:257
Alignment explanation
Indices: 32025591--32026101 Score: 711
Period size: 257 Copynumber: 2.0 Consensus size: 257
32025581 AGGAGCTTGG
*
32025591 GTGCATGCCTTAGATGTGAATCTTTGAACCATAAGATCAATGATTGTCCACTTCAAAATAAGCAG
1 GTGCATGCCTTAGATGTGAATCCTTGAACCATAAGATCAATGATTGTCCACTTCAAAATAAGCAG
* * * *
32025656 ATGCAAGCCCCAGAACAGAATTGAGCTTAGAACTAAAAAGTTGAAAAGTAGGCTTAGAGAGGTCA
66 ATGCAAGCCCCAAAACAGAATCGAGCTTAGAACCAAAAAGCTGAAAAGTAGGCTTAGAGAGGTCA
*
32025721 AAGTCCAAATAGGGGTGGTAATGTAGGTCAGAGACAGAGAACACTGGGTCAGGGTGCTAACCGAG
131 AAGTCCAAATAGGGGTGGTAATGTAGGTCAGAGACAGAGAACACTGGGTCAGGGTGCTAACCGAC
* *
32025786 TCGATGTAAGACAACCTGCACTAGTCTATGCAACTAGACACAGAGAGGATCATGACACAGCT
196 TCGATGTAAGACAACCTGCACTAGTCTATGCAACTAGACACAAAGAGGACCATGACACAGCT
* * *
32025848 GTGCATGCCTTAGATGTGGATCCTTGAACCATAAGATCAATGATTTTCCACTTCGAAATGAA-CA
1 GTGCATGCCTTAGATGTGAATCCTTGAACCATAAGATCAATGATTGTCCACTTCAAAAT-AAGCA
* * * * * * * *
32025912 TATTCAATCCCCAAAACATAATCGAGCTTAGAACCAAAGAGCTGGACAGTAGGCTTAGAGAGGTT
65 GATGCAAGCCCCAAAACAGAATCGAGCTTAGAACCAAAAAGCTGAAAAGTAGGCTTAGAGAGGTC
* * * * * * *
32025977 AAGGTCCGAATAGGGGTGGTAATGTTGGTCAGAGACAGAGAGCACTGGGTTAGGTTGCTAACTGA
130 AAAGTCCAAATAGGGGTGGTAATGTAGGTCAGAGACAGAGAACACTGGGTCAGGGTGCTAACCG-
* * * * *
32026042 ACT-GATGTAAGACAACTTGCACTGGTCTATGCAGCTAGACATAAAGAGGACCGTGACACA
194 ACTCGATGTAAGACAACCTGCACTAGTCTATGCAACTAGACACAAAGAGGACCATGACACA
32026102 ACCAACATCA
Statistics
Matches: 221, Mismatches: 31, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
257 217 0.98
258 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (257 bp):
GTGCATGCCTTAGATGTGAATCCTTGAACCATAAGATCAATGATTGTCCACTTCAAAATAAGCAG
ATGCAAGCCCCAAAACAGAATCGAGCTTAGAACCAAAAAGCTGAAAAGTAGGCTTAGAGAGGTCA
AAGTCCAAATAGGGGTGGTAATGTAGGTCAGAGACAGAGAACACTGGGTCAGGGTGCTAACCGAC
TCGATGTAAGACAACCTGCACTAGTCTATGCAACTAGACACAAAGAGGACCATGACACAGCT
Found at i:32030161 original size:49 final size:49
Alignment explanation
Indices: 32030064--32030180 Score: 144
Period size: 49 Copynumber: 2.4 Consensus size: 49
32030054 ATGTCTACAA
* * * **
32030064 ATCTGGTGGCTTTACCACAATATTTTGTATCTGGCAATTTGACAGCATT
1 ATCTGGTGGCTTGACCATAATATTTTGTATCTGGAAACCTGACAGCATT
***
32030113 ATCTGGTGGCTTGACCATAATATTTTGTATCTGGAAACCTGTTTGCATT
1 ATCTGGTGGCTTGACCATAATATTTTGTATCTGGAAACCTGACAGCATT
* *
32030162 ATCTAGTGGCTTGTCCATA
1 ATCTGGTGGCTTGACCATA
32030181 TTAGTGACGT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (49 bp):
ATCTGGTGGCTTGACCATAATATTTTGTATCTGGAAACCTGACAGCATT
Found at i:32040274 original size:26 final size:26
Alignment explanation
Indices: 32040245--32040312 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
32040235 TATACATCAT
*
32040245 TACTCACATGAGCTGTGAAATGGACC
1 TACTCACACGAGCTGTGAAATGGACC
*
32040271 TACTCACACGAGCTGTGAAATGGGCC
1 TACTCACACGAGCTGTGAAATGGACC
* *
32040297 TGCTCACACAAGCTGT
1 TACTCACACGAGCTGT
32040313 AGGTCGAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (26 bp):
TACTCACACGAGCTGTGAAATGGACC
Found at i:32044416 original size:29 final size:28
Alignment explanation
Indices: 32044345--32044431 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 28
32044335 AAATATATGA
* **
32044345 ATTTCAATTTT-AAAAATTCAAAATAAT
1 ATTTAAATTTTAAAAAATTCAAAATGGT
*
32044372 ATATATAAA-TTAAAAAAATTACAAAATGGT
1 AT-T-TAAATTTTAAAAAATT-CAAAATGGT
*
32044402 ATTTAAATTTTAAAAAATTGCAAAAAGGT
1 ATTTAAATTTTAAAAAATT-CAAAATGGT
32044431 A
1 A
32044432 ATTTCTAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 2 0.04
28 7 0.15
29 30 0.62
30 9 0.19
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (28 bp):
ATTTAAATTTTAAAAAATTCAAAATGGT
Found at i:32044644 original size:18 final size:18
Alignment explanation
Indices: 32044613--32044652 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32044603 GTTTAAATAC
* * *
32044613 TTTTTTATTTTTTTATAA
1 TTTTTAATTATTTTAAAA
32044631 TTTTTAATTATTTTAAAA
1 TTTTTAATTATTTTAAAA
32044649 TTTT
1 TTTT
32044653 AAAATCTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTAATTATTTTAAAA
Found at i:32048401 original size:38 final size:38
Alignment explanation
Indices: 32048356--32048443 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 38
32048346 GATCTTTCGA
* * **
32048356 GGCGACACCGTGGCAACGGTTATCTACTGGTCCTTTGG
1 GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
* * * *
32048394 GGTGACACTGCGACGACGATTATCTACTGGTCCTTCAG
1 GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
32048432 GGCGACACCGTG
1 GGCGACACCGTG
32048444 TAAACGGTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (38 bp):
GGCGACACCGTGACAACGATTATCTACTGGTCCTTCAG
Found at i:32051507 original size:2 final size:2
Alignment explanation
Indices: 32051500--32051527 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32051490 TTCAAAATTT
32051500 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
32051528 AATTCAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:32052428 original size:13 final size:14
Alignment explanation
Indices: 32052400--32052428 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32052390 AATTGATATT
32052400 AAAATCATTTTAAA
1 AAAATCATTTTAAA
32052414 AAAATCATTTTAAA
1 AAAATCATTTTAAA
32052428 A
1 A
32052429 TAAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAATCATTTTAAA
Found at i:32055280 original size:26 final size:27
Alignment explanation
Indices: 32055246--32055306 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
32055236 CAGGAAACTG
* *
32055246 AACACGGGATAG-TCTGTCGGGACACT-
1 AACATGGGATAGTTC-GTCGAGACACTA
*
32055272 AACATGGGATAGTTCGTCGAGACAGTA
1 AACATGGGATAGTTCGTCGAGACACTA
32055299 AACATGGG
1 AACATGGG
32055307 GAGTACGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (27 bp):
AACATGGGATAGTTCGTCGAGACACTA
Found at i:32071913 original size:51 final size:51
Alignment explanation
Indices: 32071853--32072075 Score: 211
Period size: 51 Copynumber: 4.4 Consensus size: 51
32071843 CAGTGGTTTG
* * * * *
32071853 CACATAGTACCACCCATGTGACCATTGTC-ATCTGATACACGTAGTAGCCTA
1 CACATAGTACTACACACGTGACCA-AGTCTATCTGATACACATAGTAGCCTA
* * * * * *
32071904 CACATAGTACTATACACGTGATCAAG-CTTTCTGGTTCACATAGTAGCCTG
1 CACATAGTACTACACACGTGACCAAGTCTATCTGATACACATAGTAGCCTA
* * *
32071954 CACATAGTACTACACACGTGACCAAGACCATCTGGTACACATAGTAGCCTA
1 CACATAGTACTACACACGTGACCAAGTCTATCTGATACACATAGTAGCCTA
* ** * *
32072005 CACATAGTACTACACATGTGACCATTA-TCTAT-TGATACATGTAGTAGCTTG
1 CACATAGTACTACACACGTGACCA--AGTCTATCTGATACACATAGTAGCCTA
*
32072056 CACTTAGTACTACACACGTG
1 CACATAGTACTACACACGTG
32072076 TTCATAGGTA
Statistics
Matches: 141, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 42 0.30
51 94 0.67
52 3 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (51 bp):
CACATAGTACTACACACGTGACCAAGTCTATCTGATACACATAGTAGCCTA
Found at i:32072019 original size:12 final size:13
Alignment explanation
Indices: 32071989--32072021 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
32071979 GACCATCTGG
32071989 TACACATAGTAGCC
1 TACACATAGTA-CC
32072003 TACACATAGTA-C
1 TACACATAGTACC
32072015 TACACAT
1 TACACAT
32072022 GTGACCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
14 11 0.58
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:32084055 original size:25 final size:26
Alignment explanation
Indices: 32083981--32084055 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
32083971 ACGAATTTTC
* *
32083981 TCAAAATTTTACCAAGG-AAAATTCG
1 TCAAAATTTTACTAGGGTAAAATTCG
* *
32084006 TTAAAATTTTACTAAGAGTAAAATT-G
1 TCAAAATTTTACT-AGGGTAAAATTCG
*
32084032 TCAAAATTTTGCTAGGGTAAAATT
1 TCAAAATTTTACTAGGGTAAAATT
32084056 AGATGAGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
25 21 0.51
26 14 0.34
27 6 0.15
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGTAAAATTCG
Found at i:32086254 original size:51 final size:51
Alignment explanation
Indices: 32086174--32086270 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
32086164 GGAAACGAAG
32086174 CAGGTGGAGGGGATGTAGAAACAGAAGGTTGATAGCATGGGCTAGGTAAGA
1 CAGGTGGAGGGGATGTAGAAACAGAAGGTTGATAGCATGGGCTAGGTAAGA
* ** * *
32086225 CAGGTGGAGTGGATGTAGAAGTAGTAGGTTGATAGGATGGGCTAGG
1 CAGGTGGAGGGGATGTAGAAACAGAAGGTTGATAGCATGGGCTAGG
32086271 GAAGGTACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.30, C:0.06, G:0.43, T:0.21
Consensus pattern (51 bp):
CAGGTGGAGGGGATGTAGAAACAGAAGGTTGATAGCATGGGCTAGGTAAGA
Found at i:32095811 original size:25 final size:26
Alignment explanation
Indices: 32095769--32095823 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
32095759 CCAAAATATG
*
32095769 ATTTTTGGATTGAATTGAATAAAATT
1 ATTTTTGGAATGAATTGAATAAAATT
* **
32095795 ATTTTT-GAATGAGTTGAATTTAATT
1 ATTTTTGGAATGAATTGAATAAAATT
32095820 ATTT
1 ATTT
32095824 AGATCAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.51
Consensus pattern (26 bp):
ATTTTTGGAATGAATTGAATAAAATT
Found at i:32104679 original size:20 final size:20
Alignment explanation
Indices: 32104654--32104692 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32104644 TTACTTCTTT
32104654 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
32104674 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
32104693 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:32105017 original size:50 final size:50
Alignment explanation
Indices: 32104948--32105071 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 50
32104938 GTACTACCAG
* * * ** * *
32104948 TGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCA
1 TGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAGTGCCAA
* * *
32104998 TGCCATGTCCCAGGCATGGTCTTACGGGGGACCTCTCATCTCAGTGCCAA
1 TGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAGTGCCAA
*
32105048 CGCCATGTCCCAGACATGGTCTTA
1 TGCCATGTCCCAGACATGGTCTTA
32105072 TGTGGCGCCT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAGTGCCAA
Found at i:32107381 original size:25 final size:25
Alignment explanation
Indices: 32107347--32107396 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32107337 AGAGGAATGT
32107347 ATGTGAATGAATGCAATATTATATA
1 ATGTGAATGAATGCAATATTATATA
32107372 ATGTGAATGAATGCAATATTATATA
1 ATGTGAATGAATGCAATATTATATA
32107397 CATTTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (25 bp):
ATGTGAATGAATGCAATATTATATA
Found at i:32109369 original size:20 final size:20
Alignment explanation
Indices: 32109344--32109384 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32109334 AAAAAGAAAC
**
32109344 TTAATTTTTTGTTTCATGCT
1 TTAATTTTTTGCATCATGCT
32109364 TTAATTTTTTGCATCATGCT
1 TTAATTTTTTGCATCATGCT
32109384 T
1 T
32109385 ATATAAAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.61
Consensus pattern (20 bp):
TTAATTTTTTGCATCATGCT
Found at i:32123168 original size:24 final size:24
Alignment explanation
Indices: 32123141--32123188 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32123131 GCATGAAATG
32123141 GTTGATCTATTTCCCTATGTTGAT
1 GTTGATCTATTTCCCTATGTTGAT
32123165 GTTGATCTATTTCCCTATGTTGAT
1 GTTGATCTATTTCCCTATGTTGAT
32123189 TTTCTCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (24 bp):
GTTGATCTATTTCCCTATGTTGAT
Found at i:32124202 original size:166 final size:160
Alignment explanation
Indices: 32124018--32124322 Score: 468
Period size: 160 Copynumber: 1.9 Consensus size: 160
32124008 GGATTTTTTT
32124018 AAATTAAAAATTAATTCCATCTTGGATATTACCTACCATGTCATCATTTAATGGTGAATTCTTAA
1 AAATTAAAAATTAATTCCATCTTGGATATTACCTACCATG--ATCATTTAATGGTGAATTCTTAA
*
32124083 CAAAATGAAATAATTTACATTTTTTGTCTAATGTACAAAGATTAATTTA-CTCATTTTTAAAAGA
64 CAAAATGAAATAATTT--ATTTTTT-T-TAATGTACAAAGATTAATTTATC-CACTTTTAAAAGA
*
32124147 GAGAACAAAATACAATCCTATTTCTACTAAATGGGCG
124 AAGAACAAAATACAATCCTATTTCTACTAAATGGGCG
* * *
32124184 AAATTAAACATTAATTCCATCTTGGATATTACCTACCATGATCATTTAATGGTGAATTTTTAACT
1 AAATTAAAAATTAATTCCATCTTGGATATTACCTACCATGATCATTTAATGGTGAATTCTTAACA
* * *
32124249 AAATGAAATAATTTATTTTTTTTAATGTATAAAGATTAATTTATCCACTTTTAATAGAAAGAATA
66 AAATGAAATAATTTATTTTTTTTAATGTACAAAGATTAATTTATCCACTTTTAAAAGAAAGAACA
32124314 AAATACAAT
131 AAATACAAT
32124323 TCAACTATTA
Statistics
Matches: 130, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
160 45 0.35
161 2 0.02
162 7 0.05
164 37 0.28
166 39 0.30
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (160 bp):
AAATTAAAAATTAATTCCATCTTGGATATTACCTACCATGATCATTTAATGGTGAATTCTTAACA
AAATGAAATAATTTATTTTTTTTAATGTACAAAGATTAATTTATCCACTTTTAAAAGAAAGAACA
AAATACAATCCTATTTCTACTAAATGGGCG
Found at i:32124839 original size:16 final size:16
Alignment explanation
Indices: 32124820--32124859 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
32124810 TCCCATGTTA
*
32124820 GGTTTTTGGATTTTAG
1 GGTTTTGGGATTTTAG
* *
32124836 GGTTTAGGGGTTTTAG
1 GGTTTTGGGATTTTAG
32124852 GGTTTTGG
1 GGTTTTGG
32124860 AGAAAAAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.40, T:0.50
Consensus pattern (16 bp):
GGTTTTGGGATTTTAG
Found at i:32125381 original size:123 final size:125
Alignment explanation
Indices: 32124881--32125411 Score: 879
Period size: 125 Copynumber: 4.3 Consensus size: 125
32124871 AACAAATAAG
* * * * * *
32124881 TCGCGCCCACGTGTATGCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGAGTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
* * *
32124945 TCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTGTTTGATAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
32125005 TCGCGCCCTCGTCGACGCGCTTTTGCTATAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
*
32125070 TCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
32125130 TCGCGCCCTCATGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTTGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
*
32125195 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
32125255 TCGCGCCCTTGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATAATTTCGACTTGACGTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
32125319 TCTGAGCAAATAGTAT-AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
66 TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
32125378 TCGCGCCCTCGTAGACGCACTTTTGCTACAGTAG
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
32125412 CATGTTTGGG
Statistics
Matches: 381, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
123 73 0.19
124 69 0.18
125 239 0.63
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (125 bp):
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTT
TCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:32139459 original size:38 final size:38
Alignment explanation
Indices: 32139408--32139483 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
32139398 GGTATGTGGG
**
32139408 TGTTACAGGGAACAGAGCCTTATTGGTTTGGAAACTAT
1 TGTTACAGGGAACAGAGCCTTATCAGTTTGGAAACTAT
32139446 TGTTACAGGGAACAGAGCCTTATCAGTTTGGAAACTAT
1 TGTTACAGGGAACAGAGCCTTATCAGTTTGGAAACTAT
32139484 CTTACAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (38 bp):
TGTTACAGGGAACAGAGCCTTATCAGTTTGGAAACTAT
Found at i:32139801 original size:26 final size:26
Alignment explanation
Indices: 32139771--32139821 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32139761 AACTATTCAT
* *
32139771 AAAGTAATCTTTGGTGATAACTGAGC
1 AAAGTAATCTTTGGAGACAACTGAGC
*
32139797 AAAGTGATCTTTGGAGACAACTGAG
1 AAAGTAATCTTTGGAGACAACTGAG
32139822 AACTAGGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (26 bp):
AAAGTAATCTTTGGAGACAACTGAGC
Found at i:32145336 original size:20 final size:19
Alignment explanation
Indices: 32145283--32145338 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
32145273 TTTGTTCATA
*
32145283 AAAAG-AAATCAAAGAAAT
1 AAAAGAAAATCGAAGAAAT
**
32145301 AAAAGAAGAAGAGAAGAACAT
1 AAAAGAA-AATCGAAGAA-AT
32145322 AAAAGAAAATCGAAGAA
1 AAAAGAAAATCGAAGAA
32145339 TCAGCTCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.17
19 1 0.03
20 15 0.50
21 9 0.30
ACGTcount: A:0.70, C:0.05, G:0.18, T:0.07
Consensus pattern (19 bp):
AAAAGAAAATCGAAGAAAT
Found at i:32146273 original size:44 final size:44
Alignment explanation
Indices: 32146176--32146636 Score: 218
Period size: 44 Copynumber: 10.6 Consensus size: 44
32146166 CTTCGGTCCA
* * * * * *
32146176 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGC--C-ATCTA
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
* * *
32146217 CTCTACTGTAACTTCAGAGAGATAAGATCTAATACTTTAATCCG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
* * * * *
32146261 CTCCACTGTAACTTCAGGGAGAT-AGA-ATAGTGTCTTCGATCTG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAAT-ACTTCAATCTG
* * * *
32146304 CTCCACTATAA-TCTCAGGGAGATAAGATCT-CTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGAGAGATAAGATCTAAT-ACTTCAATCTG
* * * * **
32146348 CTCTACTGTAACCTCA-AGGAGATAAGATCTGAAATTCTTCAGTCAA
1 CTCCACTGTAACTTCAGA-GAGATAAGATCT--AATACTTCAATCTG
* * * * *
32146394 CTCCAC-GTAACCTCAGAGAGATAAGACCTGATA---CGATCTA
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
* * * * **
32146434 CTCTACTGTAACTTTAGAGAGATAAGATCTATTACTTTAATCCA
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
* ** * *
32146478 CTCAACTACAACTTCAG-GAAGATAGGAT-TATTGACTTCAATCTG
1 CTCCACTGTAACTTCAGAG-AGATAAGATCTAAT-ACTTCAATCTG
** * * * * *
32146522 CTCCACTGCGACCTCAGGGAGATAAGATCTATTACTTTAATCCG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
** * * * *
32146566 CTCCACTACAACTTCAGGGAGATAGGAT-T-ATCGAATTCAATCTA
1 CTCCACTGTAACTTCAGAGAGATAAGATCTAAT--ACTTCAATCTG
* *
32146610 CTCCACTGCAACCTCAG-GAGATAAGAT
1 CTCCACTGTAACTTCAGAGAGATAAGAT
32146637 TTGCTTCTTT
Statistics
Matches: 323, Mismatches: 74, Indels: 44
0.73 0.17 0.10
Matches are distributed among these distances:
40 9 0.03
41 51 0.16
42 5 0.02
43 47 0.15
44 171 0.53
45 26 0.08
46 13 0.04
47 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGAGAGATAAGATCTAATACTTCAATCTG
Found at i:32146589 original size:218 final size:218
Alignment explanation
Indices: 32146121--32146635 Score: 587
Period size: 217 Copynumber: 2.4 Consensus size: 218
32146111 AATTTGTTAT
* * ** * * *
32146121 CTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTACTATTCTTCGGTCCACTCCACTGT
1 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAAGATCTACAATTCTTCAGTCAACTCCACTGT
* *
32146185 AACCTCAGGGAGATAAGACCTGATGCCATCTACTCTACTGTAACTTCAGAGAGATAAGATCTAAT
66 AACCTCAGAGAGATAAGACCTGATACCATCTACTCTACTGTAACTTCAGAGAGATAAGATCTAAT
* * ** * * * *
32146250 ACTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGAATAGTGTCTTCGATCTGCTCCACTATAA
131 ACTTTAATCCACTCAACTACAACTTCAGGAAGATAGAATAGTGACTTCAATCTGCTCCACTACAA
* * *
32146315 TCTCAGGGAGATAAGATCTCTGG
196 CCTCAGGGAGATAAGATCTATGA
* * ** * *
32146338 CTTCAATCTGCTCTACTGTAACCTCAAGGAGATAAGATCTGA-AATTCTTCAGTCAACTCCAC-G
1 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAAGATCT-ACAATTCTTCAGTCAACTCCACTG
* * *
32146401 TAACCTCAGAGAGATAAGACCTGATACGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTAT
65 TAACCTCAGAGAGATAAGACCTGATACCATCTACTCTACTGTAACTTCAGAGAGATAAGATCTAA
* * *
32146466 TACTTTAATCCACTCAACTACAACTTCAGGAAGATAGGATTATTGACTTCAATCTGCTCCACTGC
130 TACTTTAATCCACTCAACTACAACTTCAGGAAGATA-GAATAGTGACTTCAATCTGCTCCACTAC
* *
32146531 GACCTCAGGGAGATAAGATCTATTA
194 AACCTCAGGGAGATAAGATCTATGA
* * * *
32146556 CTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGAT-TATCGAA---TTCAATCTACTCCACT
1 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAAGATCTA-C-AATTCTTCAGTCAACTCCACT
*
32146617 GCAACCTCAG-GAGATAAGA
64 GTAACCTCAGAGAGATAAGA
32146636 TTTGCTTCTT
Statistics
Matches: 248, Mismatches: 43, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
216 23 0.09
217 119 0.48
218 103 0.42
219 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (218 bp):
CTTCAATCCGCTCCACTACAACTTCAGGGAGATAAGATCTACAATTCTTCAGTCAACTCCACTGT
AACCTCAGAGAGATAAGACCTGATACCATCTACTCTACTGTAACTTCAGAGAGATAAGATCTAAT
ACTTTAATCCACTCAACTACAACTTCAGGAAGATAGAATAGTGACTTCAATCTGCTCCACTACAA
CCTCAGGGAGATAAGATCTATGA
Found at i:32146605 original size:88 final size:87
Alignment explanation
Indices: 32146429--32146636 Score: 299
Period size: 88 Copynumber: 2.4 Consensus size: 87
32146419 ACCTGATACG
* * * *
32146429 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCTATTACTTTAATCCACTCAACTACAACTTCA
1 ATCTACTCCACTGCAACCTCAG-GAGATAAGATCTATTACTTTAATCCACTCAACTACAACTTCA
* *
32146494 GGAAGATAGGATTATTGACTTCA
65 GGAAGATAGGATTATCGAATTCA
* * * *
32146517 ATCTGCTCCACTGCGACCTCAGGGAGATAAGATCTATTACTTTAATCCGCTCCACTACAACTTCA
1 ATCTACTCCACTGCAACCTCA-GGAGATAAGATCTATTACTTTAATCCACTCAACTACAACTTCA
*
32146582 GGGAGATAGGATTATCGAATTCA
65 GGAAGATAGGATTATCGAATTCA
32146605 ATCTACTCCACTGCAACCTCAGGAGATAAGAT
1 ATCTACTCCACTGCAACCTCAGGAGATAAGAT
32146637 TTGCTTCTTT
Statistics
Matches: 106, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 11 0.10
88 94 0.89
89 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (87 bp):
ATCTACTCCACTGCAACCTCAGGAGATAAGATCTATTACTTTAATCCACTCAACTACAACTTCAG
GAAGATAGGATTATCGAATTCA
Found at i:32146763 original size:84 final size:83
Alignment explanation
Indices: 32146697--32146855 Score: 189
Period size: 87 Copynumber: 1.9 Consensus size: 83
32146687 TCTCAGTCTG
* * *
32146697 CACCGCTGCAACTTCAGGGAGATAAGACTTGA-C-GTGATCTGCTCCACTACTGCTTAGGGAGAT
1 CACCACTGCAACTTCAGGGAGATAAGA-TTGATCTCTG-CCTGCTCCACTACTGCTTAGGGAGAT
32146760 AAGATCTAT-TGTTTTAATCCA
64 AAGA-CT-TGTGTTTTAATCCA
* *
32146781 CTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGCCTGCTCCACTACTGCTTAGGGAGA
1 CACCACTGCAACTTCAGGGAGATAAGATTGA--TC-TCTGCCTGCTCCACTACTGCTTAGGGAGA
32146846 TAAGACTTGT
63 TAAGACTTGT
32146856 AATTTCCAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
83 4 0.06
84 24 0.38
85 1 0.02
86 4 0.06
87 29 0.45
88 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (83 bp):
CACCACTGCAACTTCAGGGAGATAAGATTGATCTCTGCCTGCTCCACTACTGCTTAGGGAGATAA
GACTTGTGTTTTAATCCA
Found at i:32146803 original size:44 final size:44
Alignment explanation
Indices: 32146145--32146804 Score: 186
Period size: 44 Copynumber: 15.2 Consensus size: 44
32146135 ACTACTGCTT
* *** * *
32146145 AGGGAGATAAGATCTACTATTCTTCGGTCCACTCCACTGTAACCTC
1 AGGGAGATAAGATCTA-T-TGCTTTAATCCACTCCACTGCAACTTC
* * * * *
32146191 AGGGAGATAAGACCTGA-TGC---CATCTACTCTACTGTAACTTC
1 AGGGAGATAAGATCT-ATTGCTTTAATCCACTCCACTGCAACTTC
* * * * *
32146232 AGAGAGATAAGATCTAATACTTTAATCCGCTCCACTGTAACTTC
1 AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
* * ** ** **
32146276 AGGGAGAT-AGA-ATAGTGTCTTCGATCTGCTCCACTATAA-TCTC
1 AGGGAGATAAGATCTATTG-CTTTAATCCACTCCACTGCAACT-TC
* * * ** * * *
32146319 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCTACTGTAACCTC
1 AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
* * * * * *
32146363 AAGGAGATAAGATCTGAAATT-CTTCAGTCAACTCCAC-GTAACCTC
1 AGGGAGATAAGATCT---ATTGCTTTAATCCACTCCACTGCAACTTC
* * * * * * * *
32146408 AGAGAGATAAGACCTGA-TAC---GATCTACTCTACTGTAACTTT
1 AGGGAGATAAGATCT-ATTGCTTTAATCCACTCCACTGCAACTTC
* * * *
32146449 AGAGAGATAAGATCTATTACTTTAATCCACTCAACTACAACTTC
1 AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
* * * ** * *
32146493 AGGAAGATAGGAT-TATTGACTTCAATCTGCTCCACTGCGACCTC
1 AGGGAGATAAGATCTATTG-CTTTAATCCACTCCACTGCAACTTC
* * *
32146537 AGGGAGATAAGATCTATTACTTTAATCCGCTCCACTACAACTTC
1 AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
* * * * * *
32146581 AGGGAGATAGGAT-TATCGAATTCAATCTACTCCACTGCAACCTC
1 AGGGAGATAAGATCTATTG-CTTTAATCCACTCCACTGCAACTTC
* * * * ** *
32146625 A-GGAGATAAGATTTGCTT-CTTTAGT-CAGCCCCACTGTGACTTT
1 AGGGAGATAAGATCT-ATTGCTTTAATCCA-CTCCACTGCAACTTC
* * ** * *
32146668 A-GGAGGATAAGA-C--TTGTTTTCTCAGTCTGCACCGCTGCAACTTC
1 AGGGA-GATAAGATCTATTG-CTT-T-AATCCACTCCACTGCAACTTC
* * ** * **
32146712 AGGGAGATAAGA-C--TTGAC-GTGATCTGCTCCACTACTGCTT-
1 AGGGAGATAAGATCTATTG-CTTTAATCCACTCCACTGCAACTTC
*
32146752 AGGGAGATAAGATCTATTGTTTTAATCCACTCCACTGCAACTTC
1 AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
32146796 AGGGAGATA
1 AGGGAGATA
32146805 GGATTGATTT
Statistics
Matches: 456, Mismatches: 121, Indels: 76
0.70 0.19 0.12
Matches are distributed among these distances:
40 24 0.05
41 68 0.15
42 9 0.02
43 86 0.19
44 211 0.46
45 30 0.07
46 26 0.06
47 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTATTGCTTTAATCCACTCCACTGCAACTTC
Found at i:32146992 original size:130 final size:131
Alignment explanation
Indices: 32146853--32147161 Score: 539
Period size: 131 Copynumber: 2.4 Consensus size: 131
32146843 AGATAAGACT
* *
32146853 TGTAATTTCCAACTTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCC
1 TGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATATGTTTCCC
32146918 TACTCCT-GGGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTGCTGCTCAGGGAGACAAGGT
66 TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTGCTGCTCAGGGAGACAAGGT
32146982 C
131 C
* *
32146983 TGTAATTTCCAACCTATTCCACTGCTGGTTAGGGACATATGACTTGTGGCTTAAATATGTTTCCC
1 TGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATATGTTTCCC
* *
32147048 TACTCTTGGGGAAGATAAGATTCGCCGTCTTTGATCTACTCCGCTGCTGCTCAGGGAGACAAGGT
66 TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTGCTGCTCAGGGAGACAAGGT
32147113 C
131 C
* *
32147114 TGCAATTTCCAACCTATTCCACTGCTAGTCAGGGACATAGGACTTGTG
1 TGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTG
32147162 CTCTTTGATC
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
130 67 0.40
131 101 0.60
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (131 bp):
TGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGGCTTAAATATGTTTCCC
TACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTGCTGCTCAGGGAGACAAGGT
C
Found at i:32147314 original size:87 final size:87
Alignment explanation
Indices: 32147168--32147607 Score: 648
Period size: 87 Copynumber: 5.1 Consensus size: 87
32147158 TGTGCTCTTT
* ** * * *
32147168 GATCTGCTTCACTGTCGACGCAGGAGGGCAAGATATGCTATCTTTAACCAGCTCTACTGCAACCG
1 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCG
* *
32147233 ATGGAGGCAAGGTTTTATTTTC
66 ATGGAGGCAAGGCTTTGTTTTC
* * *
32147255 GATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAACTCCACTGCACCCG
1 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCG
* *
32147320 ATGGAGCCAAGGCTTTGTTTTT
66 ATGGAGGCAAGGCTTTGTTTTC
* * *
32147342 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTACGATCTTTAACCAGCTCCACTACAACCG
1 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCG
32147407 ATGGAGGCAAGGCTTTGTTTTC
66 ATGGAGGCAAGGCTTTGTTTTC
* *
32147429 GATCTGCTTCGCTGTTAACGCAGGAAGGC-AGTACCTGCTATCTTTAACCAGCTCCACTGCAACT
1 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAG-ATCTGCTATCTTTAACCAGCTCCACTGCAACC
*
32147493 GATGGAGGCAAGGCTTCGTTTTC
65 GATGGAGGCAAGGCTTTGTTTTC
* * * * *
32147516 AATCTGCTTCGCTGTTAAAGCAGGAAGGCAAGATCTGCTATTTTTAACCAACTCCACTACAACCG
1 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCG
32147581 ATGGAGGCAAGGCTTTGTTTTC
66 ATGGAGGCAAGGCTTTGTTTTC
32147603 GATCT
1 GATCT
32147608 TCACTAATCT
Statistics
Matches: 315, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
86 2 0.01
87 311 0.99
88 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (87 bp):
GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCG
ATGGAGGCAAGGCTTTGTTTTC
Found at i:32149788 original size:46 final size:47
Alignment explanation
Indices: 32149738--32149835 Score: 123
Period size: 46 Copynumber: 2.1 Consensus size: 47
32149728 TCCTTTTTTC
32149738 TTTTTTTCTTCTCTCTTT-T-TCATTTTCATTTTGACT-TTGATT-TTGA
1 TTTTTTTCTT-T-TCTTTCTCTCATTTT-ATTTTGACTCTTGATTCTTGA
* *
32149784 TTTTTTTCTTTTTTTTCTCTCATTTTATTTTGATTCTTGATTCTTGA
1 TTTTTTTCTTTTCTTTCTCTCATTTTATTTTGACTCTTGATTCTTGA
32149831 TTTTT
1 TTTTT
32149836 CATTTTTTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
44 4 0.09
45 10 0.22
46 23 0.50
47 9 0.20
ACGTcount: A:0.10, C:0.13, G:0.06, T:0.70
Consensus pattern (47 bp):
TTTTTTTCTTTTCTTTCTCTCATTTTATTTTGACTCTTGATTCTTGA
Found at i:32149790 original size:54 final size:54
Alignment explanation
Indices: 32149731--32149844 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
32149721 TCCTTTTTCC
* *
32149731 TTTTTTCTTTTTTTCTTCTCTCTTTTTCATTTTCATT-TTGACT-TTGA-TTTTGAT
1 TTTTTTC-TTTTTT-TTCTCTCATTTT-ATTTTCATTCTTGACTCTTGATTTTTCAT
* *
32149785 TTTTTTCTTTTTTTTCTCTCATTTTATTTTGATTCTTGATTCTTGATTTTTCAT
1 TTTTTTCTTTTTTTTCTCTCATTTTATTTTCATTCTTGACTCTTGATTTTTCAT
32149839 TTTTTT
1 TTTTTT
32149845 GATTTTGGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
51 8 0.15
52 16 0.30
53 10 0.19
54 19 0.36
ACGTcount: A:0.10, C:0.13, G:0.05, T:0.72
Consensus pattern (54 bp):
TTTTTTCTTTTTTTTCTCTCATTTTATTTTCATTCTTGACTCTTGATTTTTCAT
Found at i:32149842 original size:46 final size:45
Alignment explanation
Indices: 32149757--32149844 Score: 117
Period size: 45 Copynumber: 1.9 Consensus size: 45
32149747 TCTCTCTTTT
32149757 TCATTTTCATTTTGACTTTGATTTTGATTTTTTTCTTTTTTTTCTC
1 TCATTTTCATTTTGACTTTGATTTTGA-TTTTTTCTTTTTTTTCTC
* *
32149803 TCATTTT-ATTTTGATTCTTGATTCTTGA-TTTTTCATTTTTTT
1 TCATTTTCATTTTGACT-TTGATT-TTGATTTTTTCTTTTTTTT
32149845 GATTTTGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
45 21 0.55
46 13 0.34
47 4 0.11
ACGTcount: A:0.12, C:0.11, G:0.07, T:0.69
Consensus pattern (45 bp):
TCATTTTCATTTTGACTTTGATTTTGATTTTTTCTTTTTTTTCTC
Found at i:32155077 original size:49 final size:49
Alignment explanation
Indices: 32154958--32155151 Score: 256
Period size: 47 Copynumber: 4.1 Consensus size: 49
32154948 CCTTTCGGGA
* * * * *
32154958 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
32155005 CCTGTGAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32155052 CTTATCACATATATATACACTTTCACATTCATCACAT-TG-CATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32155099 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32155148 CTTA
1 CTTA
32155152 CTATCATTTC
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
46 1 0.01
47 85 0.67
48 2 0.02
49 39 0.31
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32155120 original size:96 final size:94
Alignment explanation
Indices: 32154958--32155151 Score: 266
Period size: 96 Copynumber: 2.0 Consensus size: 94
32154948 CCTTTCGGGA
* * * *
32154958 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTGACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACATATATACAC
32155023 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCAGCCATTAGGC
* * *
32155052 CTTATCACATATATATACACTTTCACATTCATCACATT-G-CATTAGGCCTTATCACATATATAT
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCAC--ATATAT
*
32155115 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCAGCCATTAGGC
32155148 CTTA
1 CTTA
32155152 CTATCATTTC
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
94 21 0.24
95 2 0.02
96 65 0.74
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCAGCCATTAGGC
Found at i:32158787 original size:317 final size:317
Alignment explanation
Indices: 32158212--32158846 Score: 1110
Period size: 317 Copynumber: 2.0 Consensus size: 317
32158202 CGGAGTCGCC
* * *
32158212 AAGCTGTTGAAACCATTTTTTCAAGTTTGAAAAATGGGGGATCGACTTTTAGAAAGAAAATGGGA
1 AAGCTGTCGAAACCATTTTTTCAAGTTTGAAAAATGGGGGATCAACTTTTAGAAAGAAAACGGGA
**
32158277 GTCGCCACTGACCTTTTATTATGGTGCGATCGGATCACCCTGAAAATAATTTTAGGTCTACGAGT
66 GTCGCCACCAACCTTTTATTATGGTGCGATCGGATCACCCTGAAAATAATTTTAGGTCTACGAGT
* *
32158342 TTTGAGAAAATAGATTCGGGAGTCGGTTACGCACGATGAAGGGTTAGCACCCTCGTGACGCCCAA
131 TTTAAGAAAATAGATTCGGGAGTCGGTTACGCACGAGGAAGGGTTAGCACCCTCGTGACGCCCAA
32158407 AATTGGTACCGAATTGATTGTCTAATGTCTTAATGCCGAAAATTTGAAAAGATTTTAAAATACAA
196 AATTGGTACCGAATTGATTGTCTAATGTCTTAATGCCGAAAATTTGAAAAGATTTTAAAATACAA
*
32158472 TCCTTTGAAATGCAAGCTTAAATAATGGCATTGGTTGAATAGATGGACCTATTTCAA
261 TCCTTTGAAATGCAAGCTTAAATAATGGCATTGGTTGAATAGACGGACCTATTTCAA
* *
32158529 AAGCTGTCGGAACCATTTTTTTAAGTTTGAAAAATGGGGGATCAACTTTTA-AAATGAAAACGGG
1 AAGCTGTCGAAACCATTTTTTCAAGTTTGAAAAATGGGGGATCAACTTTTAGAAA-GAAAACGGG
*
32158593 AGTCGCCACCAACCTTTTATTATGGTGCGATCGGATCACCCTGAAAATAATTTTAGGTCTGCGAG
65 AGTCGCCACCAACCTTTTATTATGGTGCGATCGGATCACCCTGAAAATAATTTTAGGTCTACGAG
* * * *
32158658 TTTTAAGAAAATAGGTTCGGGAGTTGGTTATGCACGAGGAAGGGTTAGCACCCTCGTGATGCCCA
130 TTTTAAGAAAATAGATTCGGGAGTCGGTTACGCACGAGGAAGGGTTAGCACCCTCGTGACGCCCA
*
32158723 AAATTGGTACCGAATTGATTGTCTAATGTCTTAATGCCGAAAGTTTGAAAAGATTTTAAAATACA
195 AAATTGGTACCGAATTGATTGTCTAATGTCTTAATGCCGAAAATTTGAAAAGATTTTAAAATACA
32158788 ATCCTTTGAAATGCAAGCTTAAATAATGGCATTGGTTGAATAGACGGACCTATTTCAA
260 ATCCTTTGAAATGCAAGCTTAAATAATGGCATTGGTTGAATAGACGGACCTATTTCAA
32158846 A
1 A
32158847 GAAATAAACC
Statistics
Matches: 301, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
316 3 0.01
317 298 0.99
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30
Consensus pattern (317 bp):
AAGCTGTCGAAACCATTTTTTCAAGTTTGAAAAATGGGGGATCAACTTTTAGAAAGAAAACGGGA
GTCGCCACCAACCTTTTATTATGGTGCGATCGGATCACCCTGAAAATAATTTTAGGTCTACGAGT
TTTAAGAAAATAGATTCGGGAGTCGGTTACGCACGAGGAAGGGTTAGCACCCTCGTGACGCCCAA
AATTGGTACCGAATTGATTGTCTAATGTCTTAATGCCGAAAATTTGAAAAGATTTTAAAATACAA
TCCTTTGAAATGCAAGCTTAAATAATGGCATTGGTTGAATAGACGGACCTATTTCAA
Found at i:32169148 original size:61 final size:61
Alignment explanation
Indices: 32169053--32169167 Score: 203
Period size: 61 Copynumber: 1.9 Consensus size: 61
32169043 GTGAGACGGC
*
32169053 GTCAGAATGACTCCGAAATCCCCTGTTCTGTTTTTAGAAAATCATTATAAATTGGGATAGT
1 GTCAGAATGACTCCGAAATCCCCTATTCTGTTTTTAGAAAATCATTATAAATTGGGATAGT
* *
32169114 GTCAGAATGACTCTGAAATCCCCTATTCTGTTTTTGGAAAATCATTATAAATTG
1 GTCAGAATGACTCCGAAATCCCCTATTCTGTTTTTAGAAAATCATTATAAATTG
32169168 TACAAAAATG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (61 bp):
GTCAGAATGACTCCGAAATCCCCTATTCTGTTTTTAGAAAATCATTATAAATTGGGATAGT
Found at i:32169804 original size:47 final size:47
Alignment explanation
Indices: 32169733--32170086 Score: 609
Period size: 47 Copynumber: 7.5 Consensus size: 47
32169723 TGAATAAACT
*
32169733 TGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32169782 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32169829 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32169876 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32169923 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32169970 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * * *
32170017 TGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
32170064 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
32170087 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
47 286 0.97
49 8 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:32171022 original size:9 final size:9
Alignment explanation
Indices: 32171008--32171038 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32170998 GTGTTACACA
32171008 AATAATTCG
1 AATAATTCG
*
32171017 AATAATTCA
1 AATAATTCG
32171026 AATAATTCG
1 AATAATTCG
32171035 AATA
1 AATA
32171039 TCAAACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (9 bp):
AATAATTCG
Found at i:32171286 original size:30 final size:30
Alignment explanation
Indices: 32171252--32171309 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32171242 AAACCTTTTA
*
32171252 TTTTCCCCCAAAATTTTTACTCCCTTCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCAC
* * *
32171282 TTTTCCCCTAAAACTTTTATTCTCTTCC
1 TTTTCCCCCAAAACTTTTACTCCCTTCC
32171310 CCTCCCACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCAC
Found at i:32175557 original size:20 final size:20
Alignment explanation
Indices: 32175534--32175581 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32175524 AGAAGTTGTC
* * *
32175534 AATCGTATCCACCAGTTGCT
1 AATCGTATCAACCAGTTACA
32175554 AATCGTATCAACCAGTTACA
1 AATCGTATCAACCAGTTACA
32175574 AATCGTAT
1 AATCGTAT
32175582 TTGCTAGGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (20 bp):
AATCGTATCAACCAGTTACA
Found at i:32180325 original size:56 final size:56
Alignment explanation
Indices: 32180239--32180348 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
32180229 TCAGCGTATA
* *
32180239 GAGTGGGTGTGTATAGTTATATGGTTATGTTAATAAATGTTCCTGTTCAAGTGGTT
1 GAGTGGGTGTGTACAGTTATATGGTTATGTTAATAAATGTTCCTGGTCAAGTGGTT
32180295 GAGTGGGTGTGTACAGTTATATGGTTATGTTAATAAATGTTCCTGGTCAAGTGG
1 GAGTGGGTGTGTACAGTTATATGGTTATGTTAATAAATGTTCCTGGTCAAGTGG
32180349 CTATGTTAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.24, C:0.06, G:0.30, T:0.40
Consensus pattern (56 bp):
GAGTGGGTGTGTACAGTTATATGGTTATGTTAATAAATGTTCCTGGTCAAGTGGTT
Found at i:32183444 original size:27 final size:27
Alignment explanation
Indices: 32183409--32183498 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
32183399 AAACACGTCA
*
32183409 GAAATGAAAGCTTTTATGGTAAATCAT
1 GAAAAGAAAGCTTTTATGGTAAATCAT
* **
32183436 GAAAAGAAAGCTTTTGTGACATAA-CAT
1 GAAAAGAAAGCTTTTATGGTA-AATCAT
* * *
32183463 G-AAAGCAAAGCCTCTATGGTGAATCAT
1 GAAAAG-AAAGCTTTTATGGTAAATCAT
32183490 GAAAAGAAA
1 GAAAAGAAA
32183499 ACCTTTGTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
26 6 0.12
27 37 0.76
28 6 0.12
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAAAGAAAGCTTTTATGGTAAATCAT
Found at i:32183529 original size:26 final size:26
Alignment explanation
Indices: 32183457--32183549 Score: 80
Period size: 26 Copynumber: 3.5 Consensus size: 26
32183447 TTTTGTGACA
*
32183457 TAACATGAAAGCAAAGCCTCTATGGTG
1 TAACATGAAAG-AAAGCCTTTATGGTG
* *
32183484 -AATCATGAAAAGAAAACCTTTGTGGTG
1 TAA-CATG-AAAGAAAGCCTTTATGGTG
* * **
32183511 TAACATGAAAGAGAGCCTTCATGGCA
1 TAACATGAAAGAAAGCCTTTATGGTG
*
32183537 TAATATGAAAGAA
1 TAACATGAAAGAA
32183550 TGCTTTTGTG
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
26 26 0.50
27 20 0.38
28 6 0.12
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.23
Consensus pattern (26 bp):
TAACATGAAAGAAAGCCTTTATGGTG
Found at i:32185138 original size:26 final size:26
Alignment explanation
Indices: 32185076--32185138 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
32185066 TTTGCACCAG
* *
32185076 TAAAATTTTGATGATTTTACACCCAA
1 TAAAAATTTGACGATTTTACACCCAA
*
32185102 T-AAAATATTGACGATTTTAC-CCACTA
1 TAAAAAT-TTGACGATTTTACACC-CAA
32185128 TAAAAATTTGA
1 TAAAAATTTGA
32185139 GAAAATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 6 0.19
26 20 0.65
27 5 0.16
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (26 bp):
TAAAAATTTGACGATTTTACACCCAA
Found at i:32198286 original size:6 final size:6
Alignment explanation
Indices: 32198275--32198315 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
32198265 AATCCAAAAG
*
32198275 TTTTAA TTTTAA TTTTAA TTTTTCAA TTTTAA TTTTTA TTT
1 TTTTAA TTTTAA TTTTAA -TTTT-AA TTTTAA TTTTAA TTT
32198316 GTTTGTACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 22 0.69
7 8 0.25
8 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:32198302 original size:20 final size:19
Alignment explanation
Indices: 32198275--32198315 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
32198265 AATCCAAAAG
32198275 TTTTAATTTTAATTTTAAT
1 TTTTAATTTTAATTTTAAT
*
32198294 TTTTCAATTTTAATTTTTAT
1 TTTT-AATTTTAATTTTAAT
32198314 TT
1 TT
32198316 GTTTGTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTAATTTTAATTTTAAT
Found at i:32198304 original size:14 final size:13
Alignment explanation
Indices: 32198275--32198312 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
32198265 AATCCAAAAG
32198275 TTTTAA-TTTTAA
1 TTTTAATTTTTAA
32198287 TTTTAATTTTTCAA
1 TTTTAATTTTT-AA
32198301 TTTTAATTTTTA
1 TTTTAATTTTTA
32198313 TTTGTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 6 0.25
13 5 0.21
14 13 0.54
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:32200979 original size:15 final size:16
Alignment explanation
Indices: 32200959--32200996 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
32200949 TTTTAGATTA
32200959 ATTAATTAATTAA-AT
1 ATTAATTAATTAATAT
*
32200974 ATTAATTTATTAATAT
1 ATTAATTAATTAATAT
*
32200990 TTTAATT
1 ATTAATT
32200997 TGAGTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTAATTAATTAATAT
Found at i:32208004 original size:427 final size:427
Alignment explanation
Indices: 32207209--32208065 Score: 1473
Period size: 427 Copynumber: 2.0 Consensus size: 427
32207199 TGAAAAACTA
*
32207209 CATTATTTCCAAATGATTCCATTTCTCCATTTTGGAGAAAGTAATAATCATTCCTGAATGTTTCC
1 CATTATTTCCAAATGATTCCATTTCTCCATTTTGGAGAAAGTAATAATCAATCCTGAATGTTTCC
*
32207274 TATTTCTCTTTTTCTATTCCTTCCATTCATTTTTATTCAAACATGCAATTCATTTATGGTTTCAA
66 TATTTCTCTTTTTCTATTCCTTCCATTCATTTTTATTCAAACACGCAATTCATTTATGGTTTCAA
* *
32207339 TGAGCTAGCGGAGGGACCAATTGGACATATGAAGTTGAGGCTCAAATGATTTATAATTAAGTTCT
131 TGAGCTAGCAGAGGGACCAATTGGACATATGAAGTTAAGGCTCAAATGATTTATAATTAAGTTCT
*
32207404 GGCTTTTCGCCTATTAATTATAAACTTATTAAGTCACGAAGTCATTCCACTATAGTATCGTGACT
196 GGCTTTTCGCCTATTAATTATAAACTCATTAAGTCACGAAGTCATTCCACTATAGTATCGTGACT
* * * * *
32207469 GAGCTCTCTCTAATGACATACCATTACGAAATTAACTATTTAGTACTCTTCCAATGACCTTGTCA
261 GAGCTCTCTCCAATGACATACCATTACGAAAGTAACTACTTAGTACTCTTCCAATGACATTATCA
* *
32207534 TTAGTGTGTTACCCTCATAGGATATCCTTAATCTCTTTGGGATAATATATGTTCTCCCAATATAA
326 TTAGCGTGTTACCCTCATAGGATATCCTTAATCTCTTTGGGATAATATACGTTCTCCCAATATAA
*
32207599 TCATATTTTATCTTATTGTAACCATTACATCTTCCTT
391 TCATATTTTATCTTATGGTAACCATTACATCTTCCTT
* * *
32207636 CATTATTTTCAACTGATTCTATTTCTCCATTTTGGAGAAAGTAATAATCAATCCTGAATGTTTCC
1 CATTATTTCCAAATGATTCCATTTCTCCATTTTGGAGAAAGTAATAATCAATCCTGAATGTTTCC
32207701 TATTTCTCTTTTTCTATTCCTTCCATTCATTTTTATTCAAACACGCAATTCATTTATGGTTTCAA
66 TATTTCTCTTTTTCTATTCCTTCCATTCATTTTTATTCAAACACGCAATTCATTTATGGTTTCAA
* *
32207766 TGAGCTAGCAGAGGGACCAATTGGACATATGAAGTTAAGGGTCAAATGATTTTTAATTAAGTT-T
131 TGAGCTAGCAGAGGGACCAATTGGACATATGAAGTTAAGGCTCAAATGATTTATAATTAAGTTCT
*
32207830 CGGCTTTTCGCCTATTAATTATAAACTCATTTAGTCACGAAGTCATTCCACTATAGTATCGTGAC
196 -GGCTTTTCGCCTATTAATTATAAACTCATTAAGTCACGAAGTCATTCCACTATAGTATCGTGAC
*
32207895 TGAGCTCTCTCCAATGACATACCATTACGAAAGTAACTACTTAGTGCTCTTCCAATGACATTATC
260 TGAGCTCTCTCCAATGACATACCATTACGAAAGTAACTACTTAGTACTCTTCCAATGACATTATC
* * *
32207960 ATTGGCGTGTTACCCTCATAGGATATCCTTAGTCTCTTTGGGATAATATCCGTTCTCCCAATATA
325 ATTAGCGTGTTACCCTCATAGGATATCCTTAATCTCTTTGGGATAATATACGTTCTCCCAATATA
* *
32208025 ATCATATTTTGTCTTATGGTAATCATTACATCTTCCTT
390 ATCATATTTTATCTTATGGTAACCATTACATCTTCCTT
32208063 CAT
1 CAT
32208066 GAAAAGTCAA
Statistics
Matches: 404, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
426 1 0.00
427 403 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (427 bp):
CATTATTTCCAAATGATTCCATTTCTCCATTTTGGAGAAAGTAATAATCAATCCTGAATGTTTCC
TATTTCTCTTTTTCTATTCCTTCCATTCATTTTTATTCAAACACGCAATTCATTTATGGTTTCAA
TGAGCTAGCAGAGGGACCAATTGGACATATGAAGTTAAGGCTCAAATGATTTATAATTAAGTTCT
GGCTTTTCGCCTATTAATTATAAACTCATTAAGTCACGAAGTCATTCCACTATAGTATCGTGACT
GAGCTCTCTCCAATGACATACCATTACGAAAGTAACTACTTAGTACTCTTCCAATGACATTATCA
TTAGCGTGTTACCCTCATAGGATATCCTTAATCTCTTTGGGATAATATACGTTCTCCCAATATAA
TCATATTTTATCTTATGGTAACCATTACATCTTCCTT
Found at i:32208983 original size:32 final size:32
Alignment explanation
Indices: 32208942--32209006 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
32208932 GAAGAGAGAT
*
32208942 CAAAACTTGATCAAGTATCAGGATTATAGAGG
1 CAAAACTTGATCAAGTATCAAGATTATAGAGG
*
32208974 CAAAACTTGATCAAGTATCAATATTATAGAGG
1 CAAAACTTGATCAAGTATCAAGATTATAGAGG
32209006 C
1 C
32209007 CAGTGAAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (32 bp):
CAAAACTTGATCAAGTATCAAGATTATAGAGG
Found at i:32214200 original size:44 final size:44
Alignment explanation
Indices: 32214137--32214896 Score: 191
Period size: 44 Copynumber: 16.6 Consensus size: 44
32214127 TTGTTGGAGT
**
32214137 TTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
32214181 TTCAATCTT-CTCTACTGCAACTTTA-GGATATAAGATTCGCTATAGTAGA
1 TTCAATCTTAC-CCACTGCAACTTTAGGGGTATAGGA-T---T-T-GTAGC
* *
32214230 TTCAAT-TTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAAC
1 TTCAATCTT-ACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
32214274 TTCAATC-TACTACACTGCAA-TTTCAGGGAG-AGAAGATTCGCCATGGTAGA
1 TTCAATCTTAC-CCACTGCAACTTT-AGGG-GTATAGGATT-----T-GTAGC
* *
32214324 TTCAAT-TTGACCGACTGCAACTTTATGGGTATAGGATTTGTAGC
1 TTCAATCTT-ACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
32214368 TTC-ATCTTGCTCCACTACAACTTCAGGGAG-ATAAGATTTGAAATTGTAG-
1 TTCAATCTTAC-CCACTGCAACTTTAGGG-GTAT-AG----G-ATTTGTAGC
** * * * * * *
32214417 TTTTATTTCTACCCACTACTACTTCAAGGGTATAGGAATTGTAGC
1 TTCAATCT-TACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* ** * * *
32214462 TT-TATCTTGGTCCACTGCAACTTGAGGGAG-ATAAGATTCGCTATAGTAAC
1 TTCAATCTT-ACCCACTGCAACTTTAGGG-GTATAGGA-T---T-T-GTAGC
** * * * *
32214512 TTCAATCCGACACACTACAACTTCAGGGGTATAGGATTTGTAGA
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* ** * * *
32214556 TTTAATCCGATCCACTGTAACTTTAGGGATATAGGATTTGTAGC
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
32214600 TTC-ATCTTACTCTACTGCAACTTCAGGGAG-ATAAGATTTGCCATTGTAGT
1 TTCAATCTTAC-CCACTGCAACTTTAGGG-GTATAGGA--T----TTGTAGC
* * ** ** *
32214650 TTTATTCCAACCCACTGCAACTTTAGGGGTATAAAAATTGTAGC
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * * *
32214694 TTCAATCTGT-TCCACTGCAACTTTATGGAG-ATAAGATCTCCATTGTAGA
1 TTCAATCT-TACCCACTGCAACTTTA-GGGGTATAGGA--T---TTGTAGC
* * * *
32214743 TTCAATCTGACCAACTTCAA----A--GGTATAGGAATTGTAGC
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* ** * * * **
32214781 TTTAATCCGATCCACTGCAACTTCAGGGATATAGGATTCATAGC
1 TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * *
32214825 TTC-ATCTTACTCCACTGCAACTTCAGGGATATAGGATTTATAGC
1 TTCAATCTTAC-CCACTGCAACTTTAGGGGTATAGGATTTGTAGC
* * *
32214869 TTC-ATCTTGCTCCATTACAACTTTAGGG
1 TTCAATCTTAC-CCACTGCAACTTTAGGG
32214897 AGATAAGATT
Statistics
Matches: 525, Mismatches: 118, Indels: 146
0.67 0.15 0.19
Matches are distributed among these distances:
38 21 0.04
42 2 0.00
43 30 0.06
44 264 0.50
45 15 0.03
46 3 0.01
47 1 0.00
48 4 0.01
49 56 0.11
50 115 0.22
51 14 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
TTCAATCTTACCCACTGCAACTTTAGGGGTATAGGATTTGTAGC
Found at i:32214345 original size:94 final size:95
Alignment explanation
Indices: 32214146--32214554 Score: 454
Period size: 94 Copynumber: 4.4 Consensus size: 95
32214136 TTTCAATCCA
* * *
32214146 ACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAATCTT-CTCTACTGCAACTTTA-GGA
1 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTGCAACTTCAGGGA
*
32214209 TATAAGATTCGCTATAGTAGATTCAATTTG
66 GATAAGATTCGCTATAGTAGATTCAATTTG
* * * *
32214239 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAACTTCAATC-TACTACACTGCAATTTCAGGGA
1 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTGCAACTTCAGGGA
* * *
32214303 GAGAAGATTCGCCATGGTAGATTCAATTTG
66 GATAAGATTCGCTATAGTAGATTCAATTTG
* * * *
32214333 ACCGACTGCAACTTTATGGGTATAGGATTTGTAGCTTC-ATCTTGCTCCACTACAACTTCAGGGA
1 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTGCAACTTCAGGGA
* ** * ** *
32214397 GATAAGATTTGAAATTGTAG-TTTTATTTCT
66 GATAAGATTCGCTATAGTAGATTCAATTT-G
* * * * * * *
32214427 ACCCACTACTACTTCAAGGGTATAGGAATTGTAGCTT-TATCTTGGTCCACTGCAACTTGAGGGA
1 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTGCAACTTCAGGGA
**
32214491 GATAAGATTCGCTATAGTA-ACTTCAATCCG
66 GATAAGATTCGCTATAGTAGA-TTCAATTTG
* *
32214521 ACACACTACAACTTCAGGGGTATAGGATTTGTAG
1 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAG
32214555 ATTTAATCCG
Statistics
Matches: 261, Mismatches: 48, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
92 1 0.00
93 61 0.23
94 195 0.75
95 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (95 bp):
ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTTGCTCCACTGCAACTTCAGGGA
GATAAGATTCGCTATAGTAGATTCAATTTG
Found at i:32214570 original size:94 final size:94
Alignment explanation
Indices: 32214137--32214593 Score: 395
Period size: 94 Copynumber: 4.9 Consensus size: 94
32214127 TTGTTGGAGT
* * * * * ** *
32214137 TTCAATCCAACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAATCTTCTCTACTGCAAC
1 TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGATTTAATCTGATCCACTGCAAC
* *
32214202 TTTA-GGATATAAGATTCGCTATAGTAGA
66 TTCAGGGAGATAAGATTCGCTATAGTAGA
* * *
32214230 TTCAATTTGACCCACTGCAACTTCAGGGGTATAGGATTTGTA-ACTTCAATCT-ACTACACTGCA
1 TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGA-TTTAATCTGA-TCCACTGCA
* * * *
32214293 ATTTCAGGGAGAGAAGATTCGCCATGGTAGA
64 ACTTCAGGGAGATAAGATTCGCTATAGTAGA
* * * * * * * *
32214324 TTCAATTTGACCGACTGCAACTTTATGGGTATAGGATTTGTAG-CTTCATCTTGCTCCACTACAA
1 TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGATTTAATC-TGATCCACTGCAA
* ** * *
32214388 CTTCAGGGAGATAAGATTTGAAATTGTAGT
65 CTTCAGGGAGATAAGATTCGCTATAGTAGA
* * * * * * * * *
32214418 TTTATTTCTACCCACTACTACTTCAAGGGTATAGGAATTGTAGCTTT-ATCTTGGTCCACTGCAA
1 TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGATTTAATC-TGATCCACTGCAA
*
32214482 CTTGAGGGAGATAAGATTCGCTATAGTA-A
65 CTTCAGGGAGATAAGATTCGCTATAGTAGA
* * * * *
32214511 CTTCAATCCGACACACTACAACTTCAGGGGTATAGGATTTGTAGATTTAATCCGATCCACTGTAA
1 -TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGATTTAATCTGATCCACTGCAA
* * *
32214576 CTTTAGGGATATAGGATT
65 CTTCAGGGAGATAAGATT
32214594 TGTAGCTTCA
Statistics
Matches: 291, Mismatches: 64, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
93 61 0.21
94 225 0.77
95 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (94 bp):
TTCAATTCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGATTTAATCTGATCCACTGCAAC
TTCAGGGAGATAAGATTCGCTATAGTAGA
Found at i:32214647 original size:94 final size:93
Alignment explanation
Indices: 32214549--32214749 Score: 235
Period size: 94 Copynumber: 2.2 Consensus size: 93
32214539 GGTATAGGAT
* * * ** *
32214549 TTGTAGATTTAATCCGATCCACTGTAACTTTAGGGATATAGGATTTGTAGCTTC-ATCT-TACTC
1 TTGTAGATTTAATCCAACCCACTGCAACTTTAGGGATATAAAAATTGTAGCTTCAATCTGT--TC
* *
32214612 TACTGCAACTTCAGGGAGATAAGATTTGCCA
64 CACTGCAACTTCAGGGAGATAAGATCT-CCA
* * *
32214643 TTGTAGTTTTATTCCAACCCACTGCAACTTTAGGGGTATAAAAATTGTAGCTTCAATCTGTTCCA
1 TTGTAGATTTAATCCAACCCACTGCAACTTTAGGGATATAAAAATTGTAGCTTCAATCTGTTCCA
* *
32214708 CTGCAACTTTATGGAGATAAGATCTCCA
66 CTGCAACTTCAGGGAGATAAGATCTCCA
*
32214736 TTGTAGATTCAATC
1 TTGTAGATTTAATC
32214750 TGACCAACTT
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
93 14 0.16
94 70 0.79
95 4 0.04
96 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (93 bp):
TTGTAGATTTAATCCAACCCACTGCAACTTTAGGGATATAAAAATTGTAGCTTCAATCTGTTCCA
CTGCAACTTCAGGGAGATAAGATCTCCA
Found at i:32214671 original size:138 final size:137
Alignment explanation
Indices: 32214443--32214718 Score: 318
Period size: 138 Copynumber: 2.0 Consensus size: 137
32214433 TACTACTTCA
* ** * *
32214443 AGGGTATAGGAATTGTAGCTTTATCTTGGTCCACTGCAACTTGAGGGAGATAAGATTCGCTATAG
1 AGGGTATAGGAATTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAG
* ** * *
32214508 TAACTTCAATCCGACACACTACAACTTCAGGGGTATAGGATTTGTAGATTTAATCCGATCCACTG
66 TAACTTCAATCCAACACACTACAACTTCAGGGGTATAAAAATTGTAGATTCAATCCGATCCACTG
*
32214573 TAACTTT
131 CAACTTT
* * * *
32214580 AGGGATATAGGATTTGTAGCTTCATCTTACTCTACTGCAACTTCAGGGAGATAAGATTTGCCATT
1 AGGG-TATAGGAATTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATA
** * * * * * * * *
32214645 GTAGTTTTATTCCAACCCACTGCAACTTTAGGGGTATAAAAATTGTAGCTTCAATCTGTTCCACT
65 GTAACTTCAATCCAACACACTACAACTTCAGGGGTATAAAAATTGTAGATTCAATCCGATCCACT
32214710 GCAACTTT
130 GCAACTTT
32214718 A
1 A
32214719 TGGAGATAAG
Statistics
Matches: 113, Mismatches: 25, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
137 4 0.04
138 109 0.96
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (137 bp):
AGGGTATAGGAATTGTAGCTTCATCTTACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAG
TAACTTCAATCCAACACACTACAACTTCAGGGGTATAAAAATTGTAGATTCAATCCGATCCACTG
CAACTTT
Found at i:32220993 original size:138 final size:138
Alignment explanation
Indices: 32220743--32220994 Score: 303
Period size: 138 Copynumber: 1.8 Consensus size: 138
32220733 ACATATCATT
* ** * * * *
32220743 CAGGTTACCGTGTTTCGGGTGCTAGTCTTGAATGTCCTACCGGTGGCTGAGTTTTCGGCATATGT
1 CAGGTTACCATGTTTCGGGTGCTAGTCTTGAATGTCCTACCAATGGCTAAGTGTCCGACATATGT
** * * *
32220808 TGCGATTACTTGACAGCTTGTGTGAGCAGTACCATGTAACTATATTCCGAATGATAGCTTGTATG
66 TGCGATTACTCAACAGCTCGTGTGAGCAGCACCATGTAACTACATTCCGAATGATAGCTTGTATG
32220873 AGTAGACC
131 AGTAGACC
* * *
32220881 CAGGTTACCATGTTTTGGGTGCTAGTCTTGAATTTCCTACTAATGGCTAAG-GTCCGACAT-TAG
1 CAGGTTACCATGTTTCGGGTGCTAGTCTTGAATGTCCTACCAATGGCTAAGTGTCCGACATAT-G
* *
32220944 TTGCGGA-TACTCAACAGCTCGTGTGAGCAGCATCATGTAGCTTACATTCCG
65 TTGC-GATTACTCAACAGCTCGTGTGAGCAGCACCATGTAAC-TACATTCCG
32220995 CGTATCCGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
136 1 0.01
137 39 0.41
138 54 0.57
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (138 bp):
CAGGTTACCATGTTTCGGGTGCTAGTCTTGAATGTCCTACCAATGGCTAAGTGTCCGACATATGT
TGCGATTACTCAACAGCTCGTGTGAGCAGCACCATGTAACTACATTCCGAATGATAGCTTGTATG
AGTAGACC
Found at i:32233253 original size:47 final size:47
Alignment explanation
Indices: 32233175--32233507 Score: 594
Period size: 47 Copynumber: 7.1 Consensus size: 47
32233165 CCCTTCGGGA
* * * * * *
32233175 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32233222 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233316 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233363 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233410 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233457 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32233504 CTTA
1 CTTA
32233508 CTATCATTTC
Statistics
Matches: 276, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32240518 original size:31 final size:31
Alignment explanation
Indices: 32240442--32240631 Score: 163
Period size: 31 Copynumber: 6.1 Consensus size: 31
32240432 TCCCACTGGA
* *
32240442 CTCTATCTATGTTTAC-AGTCCCAACGGGCTAT
1 CTCT-TCTATGTTTACTA-TCCCAACAGACTAT
32240474 CT-TTCTATGTTTACTATCCCAACAGACTAT
1 CTCTTCTATGTTTACTATCCCAACAGACTAT
* * * ***
32240504 CTCTTCTATCTTTACTGTCCTAGTGGACTAT
1 CTCTTCTATGTTTACTATCCCAACAGACTAT
* * * *
32240535 CTCTTCTGTGTTTACAATCCCAGCA-AGTTAT
1 CTCTTCTATGTTTACTATCCCAACAGA-CTAT
* * * *
32240566 CTCTTATGTGTTTACTGTCCCGACAGACTAT
1 CTCTTCTATGTTTACTATCCCAACAGACTAT
*
32240597 CTCTTCTATGTTTACTGTCCCAAC-GAACTAT
1 CTCTTCTATGTTTACTATCCCAACAG-ACTAT
32240628 CTCT
1 CTCT
32240632 GGGGATGCTA
Statistics
Matches: 128, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
30 27 0.21
31 98 0.77
32 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.39
Consensus pattern (31 bp):
CTCTTCTATGTTTACTATCCCAACAGACTAT
Found at i:32255611 original size:20 final size:21
Alignment explanation
Indices: 32255575--32255618 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
32255565 CATTAGATTT
*
32255575 TTTAAAACTTTACATA-TTAA
1 TTTAAAACTTTAAATATTTAA
32255595 TTTAAAA-TTTAAAATATTTAA
1 TTTAAAACTTT-AAATATTTAA
32255616 TTT
1 TTT
32255619 TAGGAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 11 0.52
21 7 0.33
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTAAAACTTTAAATATTTAA
Found at i:32257310 original size:17 final size:17
Alignment explanation
Indices: 32257290--32257366 Score: 63
Period size: 15 Copynumber: 4.6 Consensus size: 17
32257280 AAAAAAAGTA
32257290 ATATTTCTCTTTTA-TAT
1 ATATTTCT-TTTTACTAT
*
32257307 ATATATTCTTTTTTACTTT
1 ATAT-TTC-TTTTTACTAT
*
32257326 ATATAT-TTTTTA-TAT
1 ATATTTCTTTTTACTAT
* *
32257341 ATA-CTCTTTTTACTTT
1 ATATTTCTTTTTACTAT
32257357 ATATTTCTTT
1 ATATTTCTTT
32257367 CTTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
14 1 0.02
15 11 0.23
16 11 0.23
17 9 0.19
18 9 0.19
19 7 0.15
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.66
Consensus pattern (17 bp):
ATATTTCTTTTTACTAT
Found at i:32257354 original size:31 final size:32
Alignment explanation
Indices: 32257299--32257360 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
32257289 AATATTTCTC
*
32257299 TTTTATATATATATTCTTTTTTACTTTATATA
1 TTTTATATATATACTCTTTTTTACTTTATATA
*
32257331 TTTTTTATATATACTC-TTTTTACTTTATAT
1 TTTTATATATATACTCTTTTTTACTTTATAT
32257361 TTCTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTTATATATATACTCTTTTTTACTTTATATA
Found at i:32259480 original size:241 final size:241
Alignment explanation
Indices: 32259057--32259539 Score: 849
Period size: 241 Copynumber: 2.0 Consensus size: 241
32259047 AAGTTATTTG
32259057 AGTCATTTCTAAGCTTCCTTTAAAATTTGGTTGCATTTGGGGGCCATTCAGGACATTTTTGGAGC
1 AGTCATTTCTAAGCTTCCTTTAAAATTTGGTTGCATTTGGGGGCCATTCAGGACATTTTTGGAGC
32259122 AAACCTAGGTAAAGAGGATCAATATTGTGACATTGGTAAGTGAATGTCAAAACATTGGCGATAGA
66 AAACCTAGGTAAAGAGGATCAATATTGTGACATTGGTAAGTGAATGTCAAAACATTGGCGATAGA
* * *
32259187 ATACCCCAAGGCCACAACAATCGCTAGTGGTATTGTGACATTGATACCAGAATTAACCAATGTTG
131 ATACCCCAAGGCCACAACAATCGCTAGTGGTATCGCGAAATTGATACCAGAATTAACCAATGTTG
* **
32259252 TAACCTTGGCTAGTGAATATTGTAACATAAGGGACAATTTGCCCAA
196 TAACCTTGGCTAGTGAAAATCATAACATAAGGGACAATTTGCCCAA
*
32259298 AGTCATTTCTAAGCTTCCTTTAAAATTTGGTTGCATTTGGGGGCCATTCGGGACATTTTTGGAGC
1 AGTCATTTCTAAGCTTCCTTTAAAATTTGGTTGCATTTGGGGGCCATTCAGGACATTTTTGGAGC
* * *
32259363 AAATCTAGGTAAAGATGATCAATATTGTGACATTGGTAAGTGAATGTCAAAACATTGGCGGTAGA
66 AAACCTAGGTAAAGAGGATCAATATTGTGACATTGGTAAGTGAATGTCAAAACATTGGCGATAGA
* **
32259428 ATACCCCAAGGTCACAACAATCGCTAGTGGTATCGCGAAATTGATACCAGAATTGCCCAATGTTG
131 ATACCCCAAGGCCACAACAATCGCTAGTGGTATCGCGAAATTGATACCAGAATTAACCAATGTTG
32259493 TAACCTTGGCTAGTGAAAATCATAACATAAGGGACAATTTGCCCAA
196 TAACCTTGGCTAGTGAAAATCATAACATAAGGGACAATTTGCCCAA
32259539 A
1 A
32259540 ATATGAATAA
Statistics
Matches: 229, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
241 229 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (241 bp):
AGTCATTTCTAAGCTTCCTTTAAAATTTGGTTGCATTTGGGGGCCATTCAGGACATTTTTGGAGC
AAACCTAGGTAAAGAGGATCAATATTGTGACATTGGTAAGTGAATGTCAAAACATTGGCGATAGA
ATACCCCAAGGCCACAACAATCGCTAGTGGTATCGCGAAATTGATACCAGAATTAACCAATGTTG
TAACCTTGGCTAGTGAAAATCATAACATAAGGGACAATTTGCCCAA
Found at i:32268310 original size:23 final size:23
Alignment explanation
Indices: 32268271--32268327 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
32268261 TAAAAAGATA
*
32268271 AAAAAATT-ATATAT-AAATAATT
1 AAAAAATTAAAATATAAAAT-ATT
32268293 CAAAAAATTAAAAT-TAAAATATT
1 -AAAAAATTAAAATATAAAATATT
*
32268316 ATAAAATTAAAA
1 AAAAAATTAAAA
32268328 AAATAAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 11 0.37
23 12 0.40
24 7 0.23
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAAAAATTAAAATATAAAATATT
Found at i:32269269 original size:32 final size:32
Alignment explanation
Indices: 32269224--32269289 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
32269214 GTTTGGTATT
32269224 TTTAATTTAATTACTCAAATATGGTTGAAATA
1 TTTAATTTAATTACTCAAATATGGTTGAAATA
* *
32269256 TTTAATTTGATTACTCAAATATTGTTGAAATA
1 TTTAATTTAATTACTCAAATATGGTTGAAATA
32269288 TT
1 TT
32269290 GGTTTTGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (32 bp):
TTTAATTTAATTACTCAAATATGGTTGAAATA
Found at i:32275897 original size:100 final size:100
Alignment explanation
Indices: 32275727--32275908 Score: 301
Period size: 100 Copynumber: 1.8 Consensus size: 100
32275717 TTTAATATTA
*
32275727 GTGAGCTTCTAAATCAACATTCTTTTAAGAGCCTCGATGTGACCATATACCTTCTTATTCCAATC
1 GTGAGCTTCTAAATCAACATTCTTTTAAGAGCCTCGACGTGACCATATACCTTCTTATTCCAATC
*
32275792 TTTGAGTTAACTCGTAAGAAAGCTTCTGAATATGT
66 CTTGAGTTAACTCGTAAGAAAGCTTCTGAATATGT
* ** *
32275827 GTGAGCTTCTGAATCAGTATTCTTTTAAGAGCCTCGACGTGACCATATACCTTTTTATTCCAATC
1 GTGAGCTTCTAAATCAACATTCTTTTAAGAGCCTCGACGTGACCATATACCTTCTTATTCCAATC
*
32275892 CTTGAGTTGACTCGTAA
66 CTTGAGTTAACTCGTAA
32275909 AATGAGAAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (100 bp):
GTGAGCTTCTAAATCAACATTCTTTTAAGAGCCTCGACGTGACCATATACCTTCTTATTCCAATC
CTTGAGTTAACTCGTAAGAAAGCTTCTGAATATGT
Found at i:32279520 original size:44 final size:44
Alignment explanation
Indices: 32279454--32279545 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
32279444 GGCAATCGAT
*
32279454 GAAGGCTAAATTTTGCTAGGGAAG-GGAAACAAGAAGAAAAAGAA
1 GAAGGCTAAATTTTGCTAGGGAAGAAG-AACAAGAAGAAAAAGAA
* * * *
32279498 GAAGGCTAAATTTTGTTGGGGAAGAAGAAGAAGAAGAAGAAGAA
1 GAAGGCTAAATTTTGCTAGGGAAGAAGAACAAGAAGAAAAAGAA
32279542 GAAG
1 GAAG
32279546 AAGAAGAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.33, T:0.14
Consensus pattern (44 bp):
GAAGGCTAAATTTTGCTAGGGAAGAAGAACAAGAAGAAAAAGAA
Found at i:32279526 original size:3 final size:3
Alignment explanation
Indices: 32279518--32280437 Score: 1813
Period size: 3 Copynumber: 306.7 Consensus size: 3
32279508 TTTTGTTGGG
32279518 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279566 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279614 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279662 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279710 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279758 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279806 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279854 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279902 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279950 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32279998 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280046 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280094 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280142 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280190 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280238 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280286 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32280334 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
32280382 GAA GAA GAA GAA GAA GAA TAA GAA GAA GAA GAA TAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
32280430 GAG GAA GA
1 GAA GAA GA
32280438 GAGGGAAATT
Statistics
Matches: 911, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 911 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:32281005 original size:9 final size:9
Alignment explanation
Indices: 32280991--32281018 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32280981 TGAGTTTTCA
32280991 AATTCGAAT
1 AATTCGAAT
32281000 AATTCGAAT
1 AATTCGAAT
32281009 AATTCGAAT
1 AATTCGAAT
32281018 A
1 A
32281019 TCAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32288770 original size:27 final size:27
Alignment explanation
Indices: 32288740--32288838 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
32288730 GCCTAGGCAA
* * * *
32288740 TAAACATGGGGTAGTTCATCGGGACAG
1 TAAACACGAGGTAGTCCATCGAGACAG
32288767 TAAACACGAGGTAGTCCATCGAGACAG
1 TAAACACGAGGTAGTCCATCGAGACAG
* * ** *
32288794 TAGAA-A-TAGGGTAGCCCGCCAAGACAG
1 TA-AACACGA-GGTAGTCCATCGAGACAG
*
32288821 TAAACACAAGGTAGTCCA
1 TAAACACGAGGTAGTCCA
32288839 CCGCGACTGC
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.16
Consensus pattern (27 bp):
TAAACACGAGGTAGTCCATCGAGACAG
Found at i:32290927 original size:10 final size:11
Alignment explanation
Indices: 32290897--32290926 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
32290887 TATGCACTTG
32290897 AATGTTTTTAA
1 AATGTTTTTAA
32290908 AATGTTTTTAA
1 AATGTTTTTAA
32290919 AATGTTTT
1 AATGTTTT
32290927 ATGACCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (11 bp):
AATGTTTTTAA
Found at i:32293689 original size:20 final size:19
Alignment explanation
Indices: 32293617--32293681 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
32293607 TCGATCCAAT
32293617 ATCGATACTTTTTGTCAAG
1 ATCGATACTTTTTGTCAAG
32293636 ATCGATACTTTTTGTCAAG
1 ATCGATACTTTTTGTCAAG
32293655 ATCGATACTTTTTGTCAAG
1 ATCGATACTTTTTGTCAAG
32293674 TATCGATA
1 -ATCGATA
32293682 GATTTTGTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 38 0.84
20 7 0.16
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (19 bp):
ATCGATACTTTTTGTCAAG
Found at i:32297540 original size:90 final size:90
Alignment explanation
Indices: 32297387--32297565 Score: 340
Period size: 90 Copynumber: 2.0 Consensus size: 90
32297377 GGTATAGGTT
32297387 TTGCTCGTTGTTGGAAAGTGCAATGGTGATTCTAATAAATTTTATATAAGTGGCATTTGCATAGA
1 TTGCTCGTTGTTGGAAAGTGCAATGGTGATTCTAATAAATTTTATATAAGTGGCATTTGCATAGA
*
32297452 AATTGCGCGGGGGACGGGGCTATTG
66 AATTGCGCGGGGGACGAGGCTATTG
32297477 TTGCTCGTTGTTGGAAAGTGCAATGGTGATTCTAATAAATTTTATATAAGTGGCATTTGCATAGA
1 TTGCTCGTTGTTGGAAAGTGCAATGGTGATTCTAATAAATTTTATATAAGTGGCATTTGCATAGA
*
32297542 AATTGTGCGGGGGACGAGGCTATT
66 AATTGCGCGGGGGACGAGGCTATT
32297566 CGTGTCCTCT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (90 bp):
TTGCTCGTTGTTGGAAAGTGCAATGGTGATTCTAATAAATTTTATATAAGTGGCATTTGCATAGA
AATTGCGCGGGGGACGAGGCTATTG
Found at i:32299302 original size:19 final size:19
Alignment explanation
Indices: 32299280--32299317 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32299270 TCAATCAGCC
32299280 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
32299299 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
32299318 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:32307436 original size:27 final size:27
Alignment explanation
Indices: 32307405--32307582 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32307395 TAAATTGTAC
32307405 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32307432 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32307458 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32307486 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32307514 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32307541 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32307568 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32307583 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32307519 original size:82 final size:81
Alignment explanation
Indices: 32307406--32307561 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32307396 AAATTGTACA
* *
32307406 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32307470 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32307487 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32307552 TGCGAGTTGA
65 TGCGAATTGA
32307562 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32307573 original size:82 final size:81
Alignment explanation
Indices: 32307402--32307582 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32307392 GATTAAATTG
* *
32307402 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32307467 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32307483 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32307547 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32307565 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32307583 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32307593 original size:27 final size:27
Alignment explanation
Indices: 32307487--32307593 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
32307477 TGACCATGCG
* * * *
32307487 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
32307515 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
32307542 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
32307569 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
32307594 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:32315176 original size:50 final size:52
Alignment explanation
Indices: 32315048--32315244 Score: 152
Period size: 56 Copynumber: 3.8 Consensus size: 52
32315038 CTTCCCGTAC
* * * * ** *
32315048 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTC-ATATC-GA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGA
* * * * * * *
32315098 TGCCCATG-CAAGTCCCAAACACGGTCTTACGGGGGACCTCTC-ATCTC-GG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGA
* *
32315147 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--AATCTC-A-GA
* * *
32315203 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
32315245 TTACCCAAAT
Statistics
Matches: 116, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
49 36 0.31
50 35 0.30
53 5 0.04
56 40 0.34
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (52 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAGA
Found at i:32330045 original size:56 final size:56
Alignment explanation
Indices: 32329959--32330190 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
32329949 ACAAGGGATG
32329959 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32330015 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32330071 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
32330127 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
32330183 ATGGGCAA
1 ATGGGCAA
32330191 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:32339806 original size:79 final size:81
Alignment explanation
Indices: 32339670--32339852 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
32339660 TCGAATGATG
* *
32339670 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32339734 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32339749 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32339811 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32339829 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32339853 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32339868 original size:40 final size:40
Alignment explanation
Indices: 32339671--32339854 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
32339661 CGAATGATGT
* * * *
32339671 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32339711 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32339751 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32339789 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32339830 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32339855 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32339876 original size:79 final size:79
Alignment explanation
Indices: 32339723--32339887 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32339713 GGACTAAGAT
* **
32339723 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32339788 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
32339802 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32339865 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32339881 CCGAAGG
1 CCGAAGG
32339888 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32344947 original size:137 final size:138
Alignment explanation
Indices: 32344794--32345041 Score: 365
Period size: 137 Copynumber: 1.8 Consensus size: 138
32344784 ATGTGCAACG
* * *
32344794 ATTAATTGTATATATTTTACCA-AATTTATTAATATAAACAATTATATTATTTAATTTCGGTC-G
1 ATTAATTGTATATATTTTA-CAGAATTTATTAATATAAAAAATTATATTAGTTAATTTCGATCAG
* *
32344857 AATATAAAAGACATGGAAATTAATATTCTTTTACAAAGAAAATAATTAATATATGAATTTGATTT
65 AATATAAAAGACATGAAAACTAATATTCTTTTACAAAGAAAATAATTAATATATGAATTTGATTT
32344922 ATACAAAAT
130 ATACAAAAT
* *
32344931 ATTAATTTTATATATTTTACAGAATTTGTTAATATAAAAAATTATATTAGTTAATTTCGATCAGA
1 ATTAATTGTATATATTTTACAGAATTTATTAATATAAAAAATTATATTAGTTAATTTCGATCAGA
* * ** *
32344996 ATATAAAATACATGAAAACTAATTTTCTTTTGGAAAGAATATAATT
66 ATATAAAAGACATGAAAACTAATATTCTTTTACAAAGAAAATAATT
32345042 TCTTTTTCTA
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
136 2 0.02
137 54 0.56
138 41 0.42
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (138 bp):
ATTAATTGTATATATTTTACAGAATTTATTAATATAAAAAATTATATTAGTTAATTTCGATCAGA
ATATAAAAGACATGAAAACTAATATTCTTTTACAAAGAAAATAATTAATATATGAATTTGATTTA
TACAAAAT
Found at i:32348161 original size:28 final size:28
Alignment explanation
Indices: 32348098--32348251 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
32348088 ATATTAAGTC
* *
32348098 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
32348125 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32348153 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32348181 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32348209 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32348237 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32348252 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:32348743 original size:12 final size:12
Alignment explanation
Indices: 32348726--32348752 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32348716 TGGGCATACT
32348726 TATGTATATATA
1 TATGTATATATA
32348738 TATGTATATATA
1 TATGTATATATA
32348750 TAT
1 TAT
32348753 CGGAATGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:32356529 original size:28 final size:28
Alignment explanation
Indices: 32356466--32356563 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32356456 ATATTAAGTC
*
32356466 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32356493 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32356521 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32356550 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32356564 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32377148 original size:54 final size:54
Alignment explanation
Indices: 32376964--32377148 Score: 271
Period size: 54 Copynumber: 3.4 Consensus size: 54
32376954 CTAATGACTA
* * * *
32376964 AAATACCCCTATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATAACCG
1 AAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
* * * * * *
32377018 AAATACCCTCACAAGGTAAAATAATTTAAATACCCCCACAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
*
32377072 AAATATCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
32377126 AAATACCCCCATAGGGTAAAATG
1 AAATACCCCCATAGGGTAAAATG
32377149 GCTGTTATAC
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 113 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (54 bp):
AAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
Found at i:32377161 original size:27 final size:27
Alignment explanation
Indices: 32376964--32377148 Score: 235
Period size: 27 Copynumber: 6.9 Consensus size: 27
32376954 CTAATGACTA
* *
32376964 AAATACCCCTATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
32376991 AAATACCCCTATAGGGTAAAATAACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * * ***
32377018 AAATACCCTCACAAGGTAAAATAATTT
1 AAATACCCCCATAGGGTAAAATGACCG
*
32377045 AAATACCCCCACAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* **
32377072 AAATATCCCCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
32377099 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
32377126 AAATACCCCCATAGGGTAAAATG
1 AAATACCCCCATAGGGTAAAATG
32377149 GCTGTTATAC
Statistics
Matches: 136, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:32386853 original size:15 final size:16
Alignment explanation
Indices: 32386815--32386856 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
32386805 TTTAAAAATC
*
32386815 AAATTAAAATATTAAT
1 AAATTAATATATTAAT
*
32386831 AAACTAATAT-TTAAT
1 AAATTAATATATTAAT
*
32386846 TAATTAATATA
1 AAATTAATATA
32386857 AAATATCTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTAATATATTAAT
Found at i:32387750 original size:50 final size:50
Alignment explanation
Indices: 32387674--32387869 Score: 275
Period size: 50 Copynumber: 3.8 Consensus size: 50
32387664 AACACATAGA
* * *
32387674 ACCTCTCATCTCGGTGCCAACACCATGTCCTAGACATGGTTTTACATGGG
1 ACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTTTTACATGGG
32387724 ACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTTTTACATGGG
1 ACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTTTTACATGGG
* * *
32387774 ACCTCTCATCTCGGTGCCAACGCCATGTCCCGGACATGGTCTTACATGGG
1 ACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTTTTACATGGG
*
32387824 ACCTCTCATAATCTCAATGATGCCAATGCCATGTCCCAGACATGGT
1 ACCTCTC---ATCTC-A-G-TGCCAACGCCATGTCCCAGACATGGT
32387870 CTTATACGAG
Statistics
Matches: 131, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
50 101 0.77
53 5 0.04
55 1 0.01
56 24 0.18
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (50 bp):
ACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTTTTACATGGG
Done.