Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 111 of 141
Found at i:32409808 original size:13 final size:13
Alignment explanation
Indices: 32409790--32409824 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
32409780 TTTCTATAAA
32409790 TTATGTTTTCAAG
1 TTATGTTTTCAAG
32409803 TTATGTTTTCAAG
1 TTATGTTTTCAAG
32409816 TTATGTTTT
1 TTATGTTTT
32409825 ATACGGGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.14, T:0.60
Consensus pattern (13 bp):
TTATGTTTTCAAG
Found at i:32412973 original size:17 final size:17
Alignment explanation
Indices: 32412951--32412986 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32412941 ATGCACTATC
* *
32412951 ATTAAAATGCAATGACA
1 ATTAAAATACAACGACA
32412968 ATTAAAATACAACGACA
1 ATTAAAATACAACGACA
32412985 AT
1 AT
32412987 GTGCACTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.56, C:0.14, G:0.08, T:0.22
Consensus pattern (17 bp):
ATTAAAATACAACGACA
Found at i:32433713 original size:31 final size:33
Alignment explanation
Indices: 32433647--32433713 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 33
32433637 TTTATTAAAA
** *
32433647 AAAAGGAATAAAAGAGAAAAGGTAAGTTTGTTC
1 AAAAGGAATAAAAGAGAAAAGAAAAGTTTGCTC
*
32433680 AAAA-GAATAAAA-AGTAAAGAAAAGTTTGCTC
1 AAAAGGAATAAAAGAGAAAAGAAAAGTTTGCTC
32433711 AAA
1 AAA
32433714 GTTTGGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 18 0.60
32 8 0.27
33 4 0.13
ACGTcount: A:0.57, C:0.04, G:0.19, T:0.19
Consensus pattern (33 bp):
AAAAGGAATAAAAGAGAAAAGAAAAGTTTGCTC
Found at i:32438525 original size:50 final size:50
Alignment explanation
Indices: 32438418--32438615 Score: 209
Period size: 50 Copynumber: 3.8 Consensus size: 50
32438408 ATTTGGGTAA
*
32438418 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATG
*
32438474 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * * *
32438524 AGAGGTTCCC-CGTAAGACCATGTCTAGGACATTGCATGGGCACTGATATG
1 AGAGG-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
** * * * *
32438574 AGAACTCCCATGTAAGACCATATCTGAGATATGACATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32438616 ATACAGAAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 4 0.03
50 69 0.57
51 4 0.03
53 3 0.02
55 1 0.01
56 41 0.34
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:32438586 original size:100 final size:104
Alignment explanation
Indices: 32438429--32438615 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 104
32438419 GAGATCCCAT
* * **
32438429 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTAGGACATGGCATGGGCATCA-T-AGATTATGAGAACTCCCATGTAAGACCA
* * *
32438494 TGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTTCCCC
64 TATCTGAGACATGACATTGGCACCGAGATGAGAGGTTCCCC
*
32438535 GTAAGACCATGTCTAGGACATTGCATGGGCA-C-T-GA-TATGAGAACTCCCATGTAAGACCATA
1 GTAAGACCATGTCTAGGACATGGCATGGGCATCATAGATTATGAGAACTCCCATGTAAGACCATA
*
32438596 TCTGAGATATGACATTGGCA
66 TCTGAGACATGACATTGGCA
32438616 ATACAGAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 40 0.56
101 2 0.03
103 1 0.01
105 1 0.01
106 28 0.39
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (104 bp):
GTAAGACCATGTCTAGGACATGGCATGGGCATCATAGATTATGAGAACTCCCATGTAAGACCATA
TCTGAGACATGACATTGGCACCGAGATGAGAGGTTCCCC
Found at i:32444702 original size:7 final size:7
Alignment explanation
Indices: 32444690--32444716 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32444680 CTCCTTTCTA
32444690 AACTAAG
1 AACTAAG
32444697 AACTAAG
1 AACTAAG
32444704 AACTAAG
1 AACTAAG
32444711 AACTAA
1 AACTAA
32444717 AGAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.11, T:0.15
Consensus pattern (7 bp):
AACTAAG
Found at i:32457206 original size:10 final size:10
Alignment explanation
Indices: 32457191--32457237 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
32457181 TAACATGTTG
32457191 AATTTTGATT
1 AATTTTGATT
*
32457201 AATTTTATAATT
1 AA-TTT-TGATT
32457213 AATTTTGATT
1 AATTTTGATT
32457223 AATTTTGATT
1 AATTTTGATT
32457233 -ATTTT
1 AATTTT
32457238 CGAAAGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 5 0.15
10 16 0.48
11 6 0.18
12 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (10 bp):
AATTTTGATT
Found at i:32467736 original size:27 final size:27
Alignment explanation
Indices: 32467704--32467755 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
32467694 ACAAGTGAGG
32467704 AAAAAGAAAAAGAGAATGAAAAAGAGC
1 AAAAAGAAAAAGAGAATGAAAAAGAGC
* ** *
32467731 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAAAAAGAGAATGAAAAAGA
32467756 AATTGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.25, T:0.08
Consensus pattern (27 bp):
AAAAAGAAAAAGAGAATGAAAAAGAGC
Found at i:32472507 original size:14 final size:14
Alignment explanation
Indices: 32472488--32472515 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32472478 ATTTCCATAA
32472488 CGTCAATAAATTGT
1 CGTCAATAAATTGT
32472502 CGTCAATAAATTGT
1 CGTCAATAAATTGT
32472516 AGTGAAGGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
CGTCAATAAATTGT
Found at i:32476512 original size:21 final size:22
Alignment explanation
Indices: 32476467--32476512 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
32476457 AATATGTTCT
*
32476467 AGTGGTAATGGCGCAATATTCA
1 AGTGGTAATGGCGCAATAGTCA
*
32476489 AGTGGTAATGGCGCAA-GGTCA
1 AGTGGTAATGGCGCAATAGTCA
32476510 AGT
1 AGT
32476513 ACTATTAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.24
Consensus pattern (22 bp):
AGTGGTAATGGCGCAATAGTCA
Found at i:32481740 original size:43 final size:43
Alignment explanation
Indices: 32481627--32481757 Score: 165
Period size: 43 Copynumber: 3.0 Consensus size: 43
32481617 ACATCGTTAT
* * * *
32481627 AGAACAGGACCTTTAGCGGCGC-TTCTCATAAAAATACCACTAA
1 AGAACATGACCTTTAGCGGCGCGTT-TCCTACAAATGCCACTAA
* *
32481670 AGAACATGACCTTTAGCGGCGGGTTTCCTACAAACGCCACTAA
1 AGAACATGACCTTTAGCGGCGCGTTTCCTACAAATGCCACTAA
* * *
32481713 AGAACATGACTTTTAGCGGCGCGTTTCCCACAAATGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCGTTTCCTACAAATGCCACTAA
32481756 AG
1 AG
32481758 GTCATGTTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
43 74 0.97
44 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCGTTTCCTACAAATGCCACTAA
Found at i:32488551 original size:422 final size:422
Alignment explanation
Indices: 32487767--32488610 Score: 1636
Period size: 422 Copynumber: 2.0 Consensus size: 422
32487757 ATATCTCAGA
32487767 TACATAATTCCTTTGTCTGCACTGTTATTTTTCCATGAAAATAGACTTCATAAGATTTAATTCTA
1 TACATAATTCCTTTGTCTGCACTGTTATTTTTCCATGAAAATAGACTTCATAAGATTTAATTCTA
32487832 TATCTCATCCACCCTCTAATTCATTTTCTACAATCCTTGGTGATTTTTCAAAATCACGTCACTAC
66 TATCTCATCCACCCTCTAATTCATTTTCTACAATCCTTGGTGATTTTTCAAAATCACGTCACTAC
32487897 TGCTGTCTCAAAACTGATTCACTGCCAATTGTTACTTTTTCATGATTTCTATGCATAATTTATCA
131 TGCTGTCTCAAAACTGATTCACTGCCAATTGTTACTTTTTCATGATTTCTATGCATAATTTATCA
*
32487962 CTTAGACTTTTATAACAACAAACACCTTCATACTTAGCCATTTTAATAAATATTCATCATACAAT
196 CTTAGACATTTATAACAACAAACACCTTCATACTTAGCCATTTTAATAAATATTCATCATACAAT
*
32488027 ATTTACATATAATCTTTTTGTCATAATTTAAGAATATACAATCGAAATGACTAAGTCCCTATACA
261 ATTTACATATAATCTTTTGGTCATAATTTAAGAATATACAATCGAAATGACTAAGTCCCTATACA
32488092 TGCCATAGCTCAAAACGTTTATCGTCTTAAAATACCGAGTTGTGGTGGTTGATAGTGTGAACGCT
326 TGCCATAGCTCAAAACGTTTATCGTCTTAAAATACCGAGTTGTGGTGGTTGATAGTGTGAACGCT
32488157 CTCCGACGTCTTCAAGATCCCGACTATGCTTG
391 CTCCGACGTCTTCAAGATCCCGACTATGCTTG
32488189 TACATAATTCCTTTGTCTGCACTGTTATTTTTCCATGAAAATAGACTTCATAAGATTTAATTCTA
1 TACATAATTCCTTTGTCTGCACTGTTATTTTTCCATGAAAATAGACTTCATAAGATTTAATTCTA
32488254 TATCTCATCCACCCTCTAATTCATTTTCTACAATCCTTGGTGATTTTTCAAAATCACGTCACTAC
66 TATCTCATCCACCCTCTAATTCATTTTCTACAATCCTTGGTGATTTTTCAAAATCACGTCACTAC
32488319 TGCTGTCTCAAAACTGATTCACTGCCAATTGTTACTTTTTCATGATTTCTATGCATAATTTATCA
131 TGCTGTCTCAAAACTGATTCACTGCCAATTGTTACTTTTTCATGATTTCTATGCATAATTTATCA
*
32488384 CTTAGACATTTATAACAACAAACACCTTCATACTTAGCCATTTTAATAACTATTCATCAT-CAAA
196 CTTAGACATTTATAACAACAAACACCTTCATACTTAGCCATTTTAATAAATATTCATCATAC-AA
*
32488448 TATTTACATATCATCTTTTGGTCATAATTTAAGAATATACAATCGAAATGACTAAGTCCCTATAC
260 TATTTACATATAATCTTTTGGTCATAATTTAAGAATATACAATCGAAATGACTAAGTCCCTATAC
32488513 ATGCCATAGCTCAAAACGTTTATCGTCTTAAAATACCGAGTTGTGGTGGTTGATAGTGTGAACGC
325 ATGCCATAGCTCAAAACGTTTATCGTCTTAAAATACCGAGTTGTGGTGGTTGATAGTGTGAACGC
32488578 TCTCCGACGTCTTCAAGATCCCGACTATGCTTG
390 TCTCCGACGTCTTCAAGATCCCGACTATGCTTG
32488611 ATAATACTAT
Statistics
Matches: 417, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
421 1 0.00
422 416 1.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (422 bp):
TACATAATTCCTTTGTCTGCACTGTTATTTTTCCATGAAAATAGACTTCATAAGATTTAATTCTA
TATCTCATCCACCCTCTAATTCATTTTCTACAATCCTTGGTGATTTTTCAAAATCACGTCACTAC
TGCTGTCTCAAAACTGATTCACTGCCAATTGTTACTTTTTCATGATTTCTATGCATAATTTATCA
CTTAGACATTTATAACAACAAACACCTTCATACTTAGCCATTTTAATAAATATTCATCATACAAT
ATTTACATATAATCTTTTGGTCATAATTTAAGAATATACAATCGAAATGACTAAGTCCCTATACA
TGCCATAGCTCAAAACGTTTATCGTCTTAAAATACCGAGTTGTGGTGGTTGATAGTGTGAACGCT
CTCCGACGTCTTCAAGATCCCGACTATGCTTG
Found at i:32489159 original size:31 final size:31
Alignment explanation
Indices: 32489116--32489175 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
32489106 TCTTACGAGG
32489116 GACCTCTCATCTCGGTGCCAAAGCCATGTGA
1 GACCTCTCATCTCGGTGCCAAAGCCATGTGA
* *
32489147 GACCTCTTATCTCGGTGCCAACGCCATGT
1 GACCTCTCATCTCGGTGCCAAAGCCATGT
32489176 CCCAGACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (31 bp):
GACCTCTCATCTCGGTGCCAAAGCCATGTGA
Found at i:32494348 original size:13 final size:13
Alignment explanation
Indices: 32494330--32494359 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32494320 TGATTATCAT
32494330 CTTTAAATATTAA
1 CTTTAAATATTAA
*
32494343 CTTTAAATATTGA
1 CTTTAAATATTAA
32494356 CTTT
1 CTTT
32494360 TTTAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.50
Consensus pattern (13 bp):
CTTTAAATATTAA
Found at i:32494652 original size:87 final size:90
Alignment explanation
Indices: 32494508--32494671 Score: 212
Period size: 87 Copynumber: 1.9 Consensus size: 90
32494498 ATGAAAGGAT
* * *
32494508 AAATAAATTTTAAATATATAGATAAACAATATTTGTCTTTATGATAATTAAATATATTTATTTTT
1 AAATAAATTTTAAATATATAGATAAACAATATTTGTCTTTATAAAAATTAAATATATTTATTTAT
32494573 ATAAT-AATATTTTGAAAGATATTA
66 ATAATAAATATTTTGAAAGATATTA
* * *
32494597 AAAT-AATTTTAACAT-TA-AGATAAATATTATTTTTCTTTA-AAAAATTAAATGATATTTATTT
1 AAATAAATTTTAA-ATATATAGATAAACAATATTTGTCTTTATAAAAATTAAAT-ATATTTATTT
*
32494658 ATATGATAAATATT
64 ATATAATAAATATT
32494672 ATATTATGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
86 9 0.14
87 34 0.52
88 16 0.25
89 6 0.09
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (90 bp):
AAATAAATTTTAAATATATAGATAAACAATATTTGTCTTTATAAAAATTAAATATATTTATTTAT
ATAATAAATATTTTGAAAGATATTA
Found at i:32495328 original size:72 final size:71
Alignment explanation
Indices: 32495178--32495482 Score: 297
Period size: 72 Copynumber: 4.3 Consensus size: 71
32495168 ACATATTACC
* ** * * * * *
32495178 GAATAAACGATTTTACTTAATATCAAAACTCAATAAATCAAATTAATTTA-ATCTTCTCAAAACA
1 GAATAAACGGTTTTACTTAATATCAAAACTCAATAAATTGAACTAAATTACCT-TTTTAAAAACA
*
32495242 TATAACTT
65 CATAA-TT
* * * * *
32495250 GAATAAATGGTTTTACTTAATATCGAAACTCAATGAATTGAACTAAAATAGCCTTTTTAAAAATA
1 GAATAAACGGTTTTACTTAATATCAAAACTCAATAAATTGAACTAAATTA-CCTTTTTAAAAACA
32495315 CATAATT
65 CATAATT
* * * ** *
32495322 GGATAAACGGTTCTACTTAATATCAAAATTCAATAAATTGAACTAAATTAAATTTTTAAACACAC
1 GAATAAACGGTTTTACTTAATATCAAAACTCAATAAATTGAACTAAATTACCTTTTTAAAAACAC
32495387 ATAATT
66 ATAATT
* * ** * * *
32495393 AAATAAACGATTTCGCTTAAGATCAAAACTTAATAAATTTAACTAAATTAACCTTTTTAAAAACA
1 GAATAAACGGTTTTACTTAATATCAAAACTCAATAAATTGAACTAAATT-ACCTTTTTAAAAACA
32495458 CATAATT
65 CATAATT
* **
32495465 AAATAAACGACTTTACTT
1 GAATAAACGGTTTTACTT
32495483 GATAATTAAT
Statistics
Matches: 189, Mismatches: 41, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
71 56 0.30
72 120 0.63
73 12 0.06
74 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (71 bp):
GAATAAACGGTTTTACTTAATATCAAAACTCAATAAATTGAACTAAATTACCTTTTTAAAAACAC
ATAATT
Found at i:32495461 original size:143 final size:144
Alignment explanation
Indices: 32495179--32495482 Score: 337
Period size: 143 Copynumber: 2.1 Consensus size: 144
32495169 CATATTACCG
* * * *
32495179 AATAAACGATTTTACTTAATATCAAAACTCAATAAATCAAATTAATTTAATCTTCTCAAAACATA
1 AATAAACGATTCTACTTAATATCAAAACTCAATAAATCAAATAAATTAAATCTTCTCAAAACACA
* * * * * * * *
32495244 TAACTTGAATAAATGGTTTTACTTAATATCGAAACTCAATGAATTGAACTAAAATAGCCTTTTTA
66 TAACTTAAATAAACGATTTCACTTAAGATCAAAACTCAATAAATTGAACTAAAATAACCTTTTTA
* *
32495309 AAAATACATAATTG
131 AAAACACATAATTA
* * * * * *
32495323 GATAAACGGTTCTACTTAATATCAAAATTCAATAAATTGAACTAAATTAAAT-TT-TTAAACACA
1 AATAAACGATTCTACTTAATATCAAAACTCAATAAA-TCAAATAAATTAAATCTTCTCAAA-ACA
* * * *
32495386 CATAA-TTAAATAAACGATTTCGCTTAAGATCAAAACTTAATAAATTTAACTAAATTAACCTTTT
64 CATAACTTAAATAAACGATTTCACTTAAGATCAAAACTCAATAAATTGAACTAAAATAACCTTTT
32495450 TAAAAACACATAATTA
129 TAAAAACACATAATTA
32495466 AATAAACGACTT-TACTT
1 AATAAACGA-TTCTACTT
32495483 GATAATTAAT
Statistics
Matches: 131, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
143 77 0.59
144 43 0.33
145 11 0.08
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (144 bp):
AATAAACGATTCTACTTAATATCAAAACTCAATAAATCAAATAAATTAAATCTTCTCAAAACACA
TAACTTAAATAAACGATTTCACTTAAGATCAAAACTCAATAAATTGAACTAAAATAACCTTTTTA
AAAACACATAATTA
Found at i:32497590 original size:21 final size:23
Alignment explanation
Indices: 32497565--32497613 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
32497555 ATAACATAAT
*
32497565 AAAAATTAAT-GATA-TAACCCA
1 AAAAATTAATAAATATTAACCCA
32497586 AAAAA-TAATAAATATTAACCCA
1 AAAAATTAATAAATATTAACCCA
32497608 AAAAAT
1 AAAAAT
32497614 AGATGTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.17
21 8 0.33
22 12 0.50
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAATTAATAAATATTAACCCA
Found at i:32497815 original size:25 final size:25
Alignment explanation
Indices: 32497745--32497847 Score: 107
Period size: 25 Copynumber: 4.0 Consensus size: 25
32497735 TTGTTGTTTC
*
32497745 GGGGTAGAGGAGTGTCGACGATGAT
1 GGGGTAGAGGAGTGTCGACGGTGAT
**
32497770 GTAGTAGAGGAGTGTCGACGGTGAT
1 GGGGTAGAGGAGTGTCGACGGTGAT
* *
32497795 GGGGTAGAGGAGTGTTGACGGCGAT
1 GGGGTAGAGGAGTGTCGACGGTGAT
** * *
32497820 GCAGCAGAGGTGATAGTCGACGGTGAT
1 GGGGTAGAGGAG-T-GTCGACGGTGAT
32497847 G
1 G
32497848 AAACAATTGG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
25 51 0.81
26 1 0.02
27 11 0.17
ACGTcount: A:0.23, C:0.10, G:0.47, T:0.20
Consensus pattern (25 bp):
GGGGTAGAGGAGTGTCGACGGTGAT
Found at i:32497829 original size:50 final size:52
Alignment explanation
Indices: 32497745--32497847 Score: 138
Period size: 50 Copynumber: 2.0 Consensus size: 52
32497735 TTGTTGTTTC
* * *
32497745 GGGGTAGAGGAGTGTCGACGATGATGTAGTAGAGGAG-T-GTCGACGGTGAT
1 GGGGTAGAGGAGTGTCGACGACGATGCAGCAGAGGAGATAGTCGACGGTGAT
* * *
32497795 GGGGTAGAGGAGTGTTGACGGCGATGCAGCAGAGGTGATAGTCGACGGTGAT
1 GGGGTAGAGGAGTGTCGACGACGATGCAGCAGAGGAGATAGTCGACGGTGAT
32497847 G
1 G
32497848 AAACAATTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 31 0.69
51 1 0.02
52 13 0.29
ACGTcount: A:0.23, C:0.10, G:0.47, T:0.20
Consensus pattern (52 bp):
GGGGTAGAGGAGTGTCGACGACGATGCAGCAGAGGAGATAGTCGACGGTGAT
Found at i:32497967 original size:34 final size:32
Alignment explanation
Indices: 32497858--32497977 Score: 98
Period size: 35 Copynumber: 3.5 Consensus size: 32
32497848 AAACAATTGG
* *
32497858 TTGGGGAAAATCTAAGGGATTTAGGGAGTTTTGAT
1 TTGGGGAAAAACTAAGGGATTT-GGGA--TATGAT
* * *
32497893 TTGGGGAAAAATTAAGGGATTTGGGGAAAAT-TT
1 TTGGGGAAAAACTAAGGGATTT-GGG-ATATGAT
*
32497926 TTAGGGGAAAAAATAAGGGATTTCGAGGATATGAT
1 TT-GGGGAAAAACTAAGGGATTT-G-GGATATGAT
32497961 TTGGGGATAAAACTAAG
1 TTGGGGA-AAAACTAAG
32497978 CAGAGCAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
33 3 0.04
34 29 0.42
35 36 0.52
36 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.33, T:0.29
Consensus pattern (32 bp):
TTGGGGAAAAACTAAGGGATTTGGGATATGAT
Found at i:32498090 original size:40 final size:41
Alignment explanation
Indices: 32498019--32498113 Score: 138
Period size: 40 Copynumber: 2.3 Consensus size: 41
32498009 AAAATGATAC
* * *
32498019 TTTGTGGCATTTTTCTCATAAACGCCGCTATTGGTT-ACCT
1 TTTGTGGCGTTTTTCTCATAAACGCCACTATTGCTTGACCT
* *
32498059 TTTGCGGCGTTTTTCTCATAAATGCCACTATTGCTTGACCT
1 TTTGTGGCGTTTTTCTCATAAACGCCACTATTGCTTGACCT
32498100 TTTGTGGCGTTTTT
1 TTTGTGGCGTTTTT
32498114 TCGTTAGCGC
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 31 0.65
41 17 0.35
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.45
Consensus pattern (41 bp):
TTTGTGGCGTTTTTCTCATAAACGCCACTATTGCTTGACCT
Found at i:32499386 original size:28 final size:30
Alignment explanation
Indices: 32499353--32499417 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
32499343 TGAATAAAAA
* *
32499353 TAATTTTATG-AGC-CTGGGGGCAAAATTG
1 TAATTTTATGAAACTCTGGGGGCAAAAATG
* *
32499381 TAATTTTGTGAAACTTTGGGGGCAAAAATG
1 TAATTTTATGAAACTCTGGGGGCAAAAATG
32499411 TAATTTT
1 TAATTTT
32499418 TCCAAAATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 9 0.29
29 2 0.06
30 20 0.65
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (30 bp):
TAATTTTATGAAACTCTGGGGGCAAAAATG
Found at i:32499755 original size:42 final size:42
Alignment explanation
Indices: 32499708--32499815 Score: 137
Period size: 41 Copynumber: 2.6 Consensus size: 42
32499698 CTTTGAATGT
*
32499708 AAAGGGGTTGCTAAGTGTAGATTCCCTGAATCATTGATCAAA
1 AAAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
* * *
32499750 AAA-GGGTTGCTAAGTGCAGATTCCCTGAATTATTGATTAAT
1 AAAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
* * * *
32499791 AATGTGGTTGCTAAGTACTGATTCC
1 AAAGGGGTTGCTAAGTGCAGATTCC
32499816 ACCGTATCCT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 36 0.63
42 21 0.37
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (42 bp):
AAAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
Found at i:32509572 original size:26 final size:26
Alignment explanation
Indices: 32509533--32509587 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
32509523 AAGCTCTCTT
*
32509533 GAAAATTGGAAGAATGGA-AATGAGA
1 GAAAATAGGAAGAATGGAGAATGAGA
32509558 GAAAATAGAGAAGAATGGATGAATGAGA
1 GAAAATAG-GAAGAATGGA-GAATGAGA
32509586 GA
1 GA
32509588 TGATGAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 10 0.38
28 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.15
Consensus pattern (26 bp):
GAAAATAGGAAGAATGGAGAATGAGA
Found at i:32510023 original size:21 final size:21
Alignment explanation
Indices: 32509999--32510040 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32509989 CAAAACATGA
32509999 GTTGAAATAAACAGATATAAT
1 GTTGAAATAAACAGATATAAT
* *
32510020 GTTGAAATAAATAGATTTAAT
1 GTTGAAATAAACAGATATAAT
32510041 TTTAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.33
Consensus pattern (21 bp):
GTTGAAATAAACAGATATAAT
Found at i:32510048 original size:21 final size:21
Alignment explanation
Indices: 32510003--32510048 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
32509993 ACATGAGTTG
*
32510003 AAATAAACAGATATAATGTTG
1 AAATAAACAGATATAATGTTA
* * *
32510024 AAATAAATAGATTTAATTTTA
1 AAATAAACAGATATAATGTTA
32510045 AAAT
1 AAAT
32510049 CATGTATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (21 bp):
AAATAAACAGATATAATGTTA
Found at i:32510737 original size:22 final size:22
Alignment explanation
Indices: 32510710--32510761 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
32510700 GGACATGCCA
32510710 CCACTGATTTATAGATAAACTG
1 CCACTGATTTATAGATAAACTG
*
32510732 CCACTGATTTGTAGATAAACTG
1 CCACTGATTTATAGATAAACTG
32510754 CCACTGAT
1 CCACTGAT
32510762 AACACTGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (22 bp):
CCACTGATTTATAGATAAACTG
Found at i:32511979 original size:12 final size:12
Alignment explanation
Indices: 32511937--32511979 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
32511927 TAAGGGGAGG
32511937 AGAAGAAAGAAGT
1 AGAAGAAA-AAGT
* *
32511950 AGGAGAAAAAAT
1 AGAAGAAAAAGT
*
32511962 ATAAGAAAAAGT
1 AGAAGAAAAAGT
32511974 AGAAGA
1 AGAAGA
32511980 GGAAGTGGAC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 17 0.71
13 7 0.29
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (12 bp):
AGAAGAAAAAGT
Found at i:32519106 original size:40 final size:40
Alignment explanation
Indices: 32519056--32519240 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
32519046 TACTGGAGAT
* *
32519056 AAACAGGGGCACGGAAGTGCATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGGATGTGCATTCAGGGGTACCGAAGTAC
* * * * *
32519096 AAATAGGGGCACGTATGTGCATTTAGGGGTACTGCAGTAC
1 AAACAGGGGCACGGATGTGCATTCAGGGGTACCGAAGTAC
* ** *
32519136 AAACAAGGGCACATATGTGCATTAAGGGGTACCGAAGTAC
1 AAACAGGGGCACGGATGTGCATTCAGGGGTACCGAAGTAC
*
32519176 AAACAGGGGCACGCATGTGCATTCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGGATGTGCATTCAGGGGTACCGAAGTAC
* *
32519216 AAATAGGGGCACGAATGTGCATTCA
1 AAACAGGGGCACGGATGTGCATTCA
32519241 TTCTATAATT
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (40 bp):
AAACAGGGGCACGGATGTGCATTCAGGGGTACCGAAGTAC
Found at i:32519223 original size:20 final size:20
Alignment explanation
Indices: 32519160--32519224 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
32519150 ATGTGCATTA
*
32519160 AGGGGTACCGAAGTACAAAC
1 AGGGGTACCGAAGTACAAAT
* * * *
32519180 AGGGGCA-CGCATGTGC-ATT
1 AGGGGTACCG-AAGTACAAAT
32519199 CAGGGGTACCGAAGTACAAAT
1 -AGGGGTACCGAAGTACAAAT
32519220 AGGGG
1 AGGGG
32519225 CACGAATGTG
Statistics
Matches: 32, Mismatches: 9, Indels: 8
0.65 0.18 0.16
Matches are distributed among these distances:
19 3 0.09
20 25 0.78
21 4 0.12
ACGTcount: A:0.32, C:0.18, G:0.35, T:0.14
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAT
Found at i:32525856 original size:104 final size:104
Alignment explanation
Indices: 32525674--32525883 Score: 402
Period size: 104 Copynumber: 2.0 Consensus size: 104
32525664 GAGCTATTAA
32525674 CGATGTAATTTCATCAAGTCCCATTCATCTAGTAAATCTTCTACCAGTACCAACTCTTCTGATAG
1 CGATGTAATTTCATCAAGTCCCATTCATCTAGTAAATCTTCTACCAGTACCAACTCTTCTGATAG
*
32525739 GGTACTGATAATCATTATTTGCTATCCTTTCCAGAATTT
66 GGTACTGAGAATCATTATTTGCTATCCTTTCCAGAATTT
*
32525778 CGATGTAATTTCATCAAGTCCCATTCATCTAGTAAATCTTCTACCAGTACCAACTCTTGTGATAG
1 CGATGTAATTTCATCAAGTCCCATTCATCTAGTAAATCTTCTACCAGTACCAACTCTTCTGATAG
32525843 GGTACTGAGAATCATTATTTGCTATCCTTTCCAGAATTT
66 GGTACTGAGAATCATTATTTGCTATCCTTTCCAGAATTT
32525882 CG
1 CG
32525884 TATGCTTCAT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37
Consensus pattern (104 bp):
CGATGTAATTTCATCAAGTCCCATTCATCTAGTAAATCTTCTACCAGTACCAACTCTTCTGATAG
GGTACTGAGAATCATTATTTGCTATCCTTTCCAGAATTT
Found at i:32529144 original size:20 final size:20
Alignment explanation
Indices: 32529121--32529206 Score: 55
Period size: 20 Copynumber: 4.3 Consensus size: 20
32529111 ACAAGCCACC
*
32529121 AGTAATGCAGACAAGCTGCT
1 AGTAATGCAGACAAGCTGCA
** * ** *
32529141 AGTAATGTGGTCAAGCCACT
1 AGTAATGCAGACAAGCTGCA
* * * *
32529161 AGTAATGTATATAAACTGCA
1 AGTAATGCAGACAAGCTGCA
* *
32529181 AGTAGTGCAAACAAGCTGCA
1 AGTAATGCAGACAAGCTGCA
32529201 AGTAAT
1 AGTAAT
32529207 ATGGAGAAGC
Statistics
Matches: 47, Mismatches: 19, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (20 bp):
AGTAATGCAGACAAGCTGCA
Found at i:32529235 original size:60 final size:60
Alignment explanation
Indices: 32529121--32529239 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 60
32529111 ACAAGCCACC
* * * * * * *
32529121 AGTAATGCAGACAAGCTGCTAGTAATGTGGTCAAGCCACTAGTAATGTATATAAACTGCA
1 AGTAATGCAAACAAGCTGCAAGTAATATGGACAAGCCACCAGTAATGCAAATAAACTGCA
* * *
32529181 AGTAGTGCAAACAAGCTGCAAGTAATATGGAGAAGCCACCAGTGATGCAAATAAACTGC
1 AGTAATGCAAACAAGCTGCAAGTAATATGGACAAGCCACCAGTAATGCAAATAAACTGC
32529240 CAATACTTCC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 49 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (60 bp):
AGTAATGCAAACAAGCTGCAAGTAATATGGACAAGCCACCAGTAATGCAAATAAACTGCA
Found at i:32531269 original size:51 final size:49
Alignment explanation
Indices: 32531092--32531431 Score: 311
Period size: 51 Copynumber: 6.7 Consensus size: 49
32531082 TATCATTTGT
** *
32531092 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATGAAGTTTTACGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTT-CGA
* * * * * * *
32531142 TTCATGTAGTAGCCTTCACATAGTACTATACACATGATCAAATTTTATGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTT-CGA
* * *
32531192 TTCACGTAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTCGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAA--TTTTCGA
* * * ** * *
32531243 TACACATAGTAGCCTTCACTTAGTACTACACATGTGTTCATCATTCATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AATT-TTCGA
* * * ** *
32531294 TACACATAGTAGCCTTCACACAGTACTACACACGTTACCAAAACTTCTA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTTCGA
* * * *
32531343 TGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGA
1 --TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AATTT-TCGA
*
32531396 TACACGTAGTAGCCTTCACAGAGTACTACACACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
32531432 TTCATCAATA
Statistics
Matches: 237, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
49 3 0.01
50 82 0.35
51 142 0.60
52 7 0.03
53 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (49 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTTCGA
Found at i:32531275 original size:26 final size:26
Alignment explanation
Indices: 32531243--32531377 Score: 72
Period size: 26 Copynumber: 5.3 Consensus size: 26
32531233 AGCTTTTCGG
32531243 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
32531269 TACACAT-GT-G--TTCATCATTCA-T-C
1 TACACATAGTAGCCTTCA-C-TT-AGTAC
**
32531292 GATACACATAGTAGCCTTCACACAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
* *** * *
32531320 TACACA-CGTTA-CCAAAACTT-CTATG
1 TACACATAG-TAGCCTTCACTTAGTA-C
32531345 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
32531371 TACACAT
1 TACACAT
32531378 GTGACCATTA
Statistics
Matches: 77, Mismatches: 16, Indels: 32
0.62 0.13 0.26
Matches are distributed among these distances:
22 4 0.05
23 2 0.03
24 6 0.08
25 23 0.30
26 32 0.42
27 4 0.05
28 2 0.03
29 4 0.05
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:32531323 original size:102 final size:102
Alignment explanation
Indices: 32531198--32531431 Score: 351
Period size: 102 Copynumber: 2.3 Consensus size: 102
32531188 ATGGTTCACG
* * * * *
32531198 TAGTAGCCTTCACATAGTACTACACATGTGACCAAAGCTTTTCGGTACACATAGTAGCCTTCACT
1 TAGTAGCCTTCACACAGTACTACACACGTGACCAAAACTTCTAGGTACACATAGTAGCCTTCACT
**
32531263 TAGTACTACACATGTGTTCATCATTCATCGATACACA
66 TAGTACTACACATGTGACCATCATTCATCGATACACA
* *
32531300 TAGTAGCCTTCACACAGTACTACACACGTTACCAAAACTTCTATGTACACATAGTAGCCTTCACT
1 TAGTAGCCTTCACACAGTACTACACACGTGACCAAAACTTCTAGGTACACATAGTAGCCTTCACT
* * *
32531365 TAGTACTACACATGTGACCATTATTTATCGATACACG
66 TAGTACTACACATGTGACCATCATTCATCGATACACA
*
32531402 TAGTAGCCTTCACAGAGTACTACACACGTG
1 TAGTAGCCTTCACACAGTACTACACACGTG
32531432 TTCATCAATA
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 118 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (102 bp):
TAGTAGCCTTCACACAGTACTACACACGTGACCAAAACTTCTAGGTACACATAGTAGCCTTCACT
TAGTACTACACATGTGACCATCATTCATCGATACACA
Found at i:32531381 original size:153 final size:152
Alignment explanation
Indices: 32531092--32531438 Score: 396
Period size: 153 Copynumber: 2.3 Consensus size: 152
32531082 TATCATTTGT
* * * * *** * * **
32531092 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATGAAGTTTTA-CGATTCATGTAGTAGCC
1 TACACATAGTAGCCTTCACAGAGTACTACACACGTGTTCATCATTCATCGATACACATAGTAGCC
* * * * * *
32531156 TTCACATAGTACTATACACATGATCAAATTTTATGGTTCACGTAGTAGCCTTCACATAGTACTAC
66 TTCACACAGTACTACACACATGACCAAATTCTATGGTACACATAGTAGCCTTCACATAGTACTAC
*
32531221 ACATGTGACCA-AAGCTTT-TCGG
131 ACATGTGACCATAA--TTTATCGA
** *
32531243 TACACATAGTAGCCTTCACTTAGTACTACACATGTGTTCATCATTCATCGATACACATAGTAGCC
1 TACACATAGTAGCCTTCACAGAGTACTACACACGTGTTCATCATTCATCGATACACATAGTAGCC
* * *
32531308 TTCACACAGTACTACACACGTTACCAAAACTTCTAT-GTACACATAGTAGCCTTCACTTAGTACT
66 TTCACACAGTACTACACACATGACC-AAA-TTCTATGGTACACATAGTAGCCTTCACATAGTACT
*
32531372 ACACATGTGACCATTATTTATCGA
129 ACACATGTGACCATAATTTATCGA
*
32531396 TACACGTAGTAGCCTTCACAGAGTACTACACACGTGTTCATCA
1 TACACATAGTAGCCTTCACAGAGTACTACACACGTGTTCATCA
32531439 ATACCTTATT
Statistics
Matches: 164, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
151 38 0.23
152 37 0.23
153 83 0.51
154 6 0.04
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (152 bp):
TACACATAGTAGCCTTCACAGAGTACTACACACGTGTTCATCATTCATCGATACACATAGTAGCC
TTCACACAGTACTACACACATGACCAAATTCTATGGTACACATAGTAGCCTTCACATAGTACTAC
ACATGTGACCATAATTTATCGA
Found at i:32531938 original size:30 final size:30
Alignment explanation
Indices: 32531904--32531965 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
32531894 TCGACTCAAC
32531904 CTTTTACAAAATTACGA-TTTTGTCCCCAAA
1 CTTTTACAAAATTAC-ATTTTTGTCCCCAAA
* * *
32531934 CTTTTGCATATTTACATTTTTGTCCCCAAA
1 CTTTTACAAAATTACATTTTTGTCCCCAAA
32531964 CT
1 CT
32531966 CAAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.42
Consensus pattern (30 bp):
CTTTTACAAAATTACATTTTTGTCCCCAAA
Found at i:32533555 original size:20 final size:20
Alignment explanation
Indices: 32533527--32533580 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
32533517 AAGACGATGA
32533527 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
*
32533547 ACGATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
32533567 TCCATTCCAATTAC
1 ACCATTCCATTTAC
32533581 CTAGGATAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.43
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:32538459 original size:27 final size:27
Alignment explanation
Indices: 32538415--32538710 Score: 275
Period size: 27 Copynumber: 11.0 Consensus size: 27
32538405 TATAGGCTAC
*
32538415 TGACTGAAA-ACCCTCGAAAGGTAAAA
1 TGACTGAAATACCCTCGAAGGGTAAAA
32538441 TGACTGAAATACCCTCGAAGGGTAAAA
1 TGACTGAAATACCCTCGAAGGGTAAAA
* * *
32538468 TGACCGAACTACCCTC-AAAGGTAAAA
1 TGACTGAAATACCCTCGAAGGGTAAAA
** *
32538494 TGACCAAAATACCCCCGAAGGGTAAAA
1 TGACTGAAATACCCTCGAAGGGTAAAA
* ** *
32538521 TGAGTGAAATACGGTCGAAGGGTAATA
1 TGACTGAAATACCCTCGAAGGGTAAAA
32538548 TGA-TCGAAATACCCTCGAAGGGTAAAA
1 TGACT-GAAATACCCTCGAAGGGTAAAA
* * **
32538575 TGACTAAAATACCCTCAAAGCATAAAA
1 TGACTGAAATACCCTCGAAGGGTAAAA
*
32538602 TGACTAAAATACCC-CTGAAGGGTAAAA
1 TGACTGAAATACCCTC-GAAGGGTAAAA
** *
32538629 TGACCAAAATACCC-CTAAAGGGTAAAA
1 TGACTGAAATACCCTC-GAAGGGTAAAA
* * *
32538656 T-AATCGAAATACCCTCGATGGATAAAA
1 TGACT-GAAATACCCTCGAAGGGTAAAA
*
32538683 TGA-TCGAAATACCC-CCATAGGGTAAAA
1 TGACT-GAAATACCCTCGA-AGGGTAAAA
32538710 T
1 T
32538711 ATCTGTTATA
Statistics
Matches: 225, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
26 36 0.16
27 186 0.83
28 3 0.01
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.18
Consensus pattern (27 bp):
TGACTGAAATACCCTCGAAGGGTAAAA
Found at i:32543348 original size:27 final size:27
Alignment explanation
Indices: 32543301--32543748 Score: 485
Period size: 27 Copynumber: 16.6 Consensus size: 27
32543291 GTTGAGGAAA
* * *
32543301 TCGAAGGCT-AAATGATCGAAATATCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* * * *
32543327 ACGAAGGATAAAATAACTGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* *
32543354 TTGAAGGGTAAAATGATCGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
*
32543381 CCGAAGGGTAAAATGACCGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* * * **
32543408 CCAAAAGGTAAAATGACTAAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* *
32543435 TCGAAGGGTAAAATGACCAAAATACCT
1 TCGAAGGGTAAAATGACCGAAATACCC
* **
32543462 TCGATGGGTAAAATGACCGAAATACAT
1 TCGAAGGGTAAAATGACCGAAATACCC
*
32543489 TTGAAGGGTAAAATGACCGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
*
32543516 TCGAATGGTAAAATGACCGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* *
32543543 TCGAATGGTAAAATGACTGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
*
32543570 CCGAAGGGTAAAATGACC-ACAATACCC
1 TCGAAGGGTAAAATGACCGA-AATACCC
* *
32543597 CCGAAGGGTAAAATGACTGAAATACCC
1 TCGAAGGGTAAAATGACCGAAATACCC
* *
32543624 TCGAAGGGTAAAAT-AACTAGAATACCC
1 TCGAAGGGTAAAATGACCGA-AATACCC
* * * *
32543651 TTGAATGGTATAATAACCGAAATA-CC
1 TCGAAGGGTAAAATGACCGAAATACCC
**
32543677 TCCGAAGGGTAAAATGATTGAAATACCC
1 T-CGAAGGGTAAAATGACCGAAATACCC
*
32543705 CCGAAGGGTAAAATGACCGAAATACCGC
1 TCGAAGGGTAAAATGACCGAAATACC-C
32543733 -C-ATAGGGTAAAATGAC
1 TCGA-AGGGTAAAATGAC
32543749 TGTTATACCC
Statistics
Matches: 357, Mismatches: 56, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
26 14 0.04
27 336 0.94
28 7 0.02
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
TCGAAGGGTAAAATGACCGAAATACCC
Found at i:32543965 original size:26 final size:26
Alignment explanation
Indices: 32543934--32544004 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
32543924 ACATATACTG
* ** *
32543934 TTACTGGCAACTTTGCTGTGTTATTA
1 TTACTGGCAGCTTTGCTGCATCATTA
*
32543960 TTACTGGCAGCTTTGCCGCATCATTA
1 TTACTGGCAGCTTTGCTGCATCATTA
*
32543986 TCACTGGCAGCTTTGCTGC
1 TTACTGGCAGCTTTGCTGC
32544005 GATATTGGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCATCATTA
Found at i:32545280 original size:19 final size:19
Alignment explanation
Indices: 32545253--32545300 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
32545243 GATTTTGATT
32545253 TTTTTAAAAAAAAATAGAA
1 TTTTTAAAAAAAAATAGAA
* **
32545272 -TTTTCAAAAATTATAGAA
1 TTTTTAAAAAAAAATAGAA
32545290 TTTTTAAAAAA
1 TTTTTAAAAAA
32545301 CTTGCAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (19 bp):
TTTTTAAAAAAAAATAGAA
Found at i:32545732 original size:27 final size:27
Alignment explanation
Indices: 32545670--32545756 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
32545660 AATTTTTAAA
*
32545670 ATTTAAAAGATTAAAAAAATTATATATT
1 ATTTAAAA-ATTAAAAAAATTATAAATT
*
32545698 -TTTAAAAAATTAAAAATCATTA-AAATT
1 ATTT-AAAAATTAAAAA-AATTATAAATT
* * * *
32545725 ATTTAAAAACTATAAAAAGTAAAAATAT
1 ATTTAAAAATTAAAAAAATTATAAAT-T
32545753 ATTT
1 ATTT
32545757 TTTAATATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
26 3 0.06
27 29 0.60
28 16 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (27 bp):
ATTTAAAAATTAAAAAAATTATAAATT
Found at i:32547791 original size:42 final size:42
Alignment explanation
Indices: 32547725--32547820 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
32547715 AAATGGTTTT
** *
32547725 ACAA-CTGTGTATCGGTGAAGCTCCCCACATGAGCTTAAGTG
1 ACAAGCTGTGTATCAATGAAACTCCCCACATGAGCTTAAGTG
** *
32547766 ACAAGCTGTGTATCAATGAAACTCCCTGCGTGAGCTTAAGTG
1 ACAAGCTGTGTATCAATGAAACTCCCCACATGAGCTTAAGTG
*
32547808 ACAAGTTGTGTAT
1 ACAAGCTGTGTAT
32547821 TAGCAATGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (42 bp):
ACAAGCTGTGTATCAATGAAACTCCCCACATGAGCTTAAGTG
Found at i:32547841 original size:42 final size:39
Alignment explanation
Indices: 32547744--32547847 Score: 100
Period size: 42 Copynumber: 2.5 Consensus size: 39
32547734 TATCGGTGAA
*
32547744 GCTCCCCACATGAGCTTAAGTGACAAGCTGTGTATCAAT
1 GCTCCCCACGTGAGCTTAAGTGACAAGCTGTGTATCAAT
** *
32547783 GAAACTCCCTGCGTGAGCTTAAGTGACAAGTTGTGTATTAGCAAT
1 G---CTCCCCACGTGAGCTTAAGTGACAAGCTGTGTA-T--CAAT
* *
32547828 GCTCCCCATGTGAGTTTAAG
1 GCTCCCCACGTGAGCTTAAG
32547848 GGTCTGTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
39 1 0.02
42 44 0.86
43 1 0.02
45 5 0.10
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (39 bp):
GCTCCCCACGTGAGCTTAAGTGACAAGCTGTGTATCAAT
Found at i:32568537 original size:32 final size:32
Alignment explanation
Indices: 32568443--32568619 Score: 121
Period size: 32 Copynumber: 5.5 Consensus size: 32
32568433 ATGTGATTGG
* ** * *
32568443 CACAAATCCATCAGTAGTAGTGATATGATTGG
1 CACAAAGCCATCAGTAACAGTGATATGATCGA
*
32568475 CACACAA-CCATCAGTAACAGTAACT-TGATCGA
1 CACA-AAGCCATCAGTAACAGTGA-TATGATCGA
* * *
32568507 CACAAAGCCATCAGTAAAAGTGATAAGATCGG
1 CACAAAGCCATCAGTAACAGTGATATGATCGA
* * *
32568539 CATACAA-CCATCAATAACAGTGAAATGATC-A
1 CACA-AAGCCATCAGTAACAGTGATATGATCGA
* * * *
32568570 GCAGACAGCCATC-GTTAACGGTAATATGATCGA
1 -CACAAAGCCATCAG-TAACAGTGATATGATCGA
*
32568603 CATAAAGCCATCAGTAA
1 CACAAAGCCATCAGTAA
32568620 TGGTACTATG
Statistics
Matches: 112, Mismatches: 23, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
31 4 0.04
32 101 0.90
33 7 0.06
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (32 bp):
CACAAAGCCATCAGTAACAGTGATATGATCGA
Found at i:32568582 original size:64 final size:64
Alignment explanation
Indices: 32568443--32568568 Score: 164
Period size: 64 Copynumber: 2.0 Consensus size: 64
32568433 ATGTGATTGG
* ** * * * *
32568443 CACAAATCCATCAGTAGTAGTGATATGATTGGCACACAACCATCAGTAACAGTAACTTGATCGA
1 CACAAAGCCATCAGTAAAAGTGATAAGATCGGCACACAACCATCAATAACAGTAACATGATCGA
*
32568507 CACAAAGCCATCAGTAAAAGTGATAAGATCGGCATACAACCATCAATAACAGTGAA-ATGATC
1 CACAAAGCCATCAGTAAAAGTGATAAGATCGGCACACAACCATCAATAACAGT-AACATGATC
32568569 AGCAGACAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
64 51 0.96
65 2 0.04
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (64 bp):
CACAAAGCCATCAGTAAAAGTGATAAGATCGGCACACAACCATCAATAACAGTAACATGATCGA
Found at i:32576358 original size:39 final size:39
Alignment explanation
Indices: 32576315--32576396 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
32576305 TCCCGATCCA
*
32576315 GCTGTGGCTGATGATGTAGAAAGCAATGCGCCAGCTCCT
1 GCTGTGGCTGATGATGTAGAAAGCAATGCGCCAGCCCCT
32576354 GCTGTGGCTGATGATGTAGAAAGCAATGCGCCAGCCCCT
1 GCTGTGGCTGATGATGTAGAAAGCAATGCGCCAGCCCCT
32576393 GCTG
1 GCTG
32576397 AAGGGGCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.22
Consensus pattern (39 bp):
GCTGTGGCTGATGATGTAGAAAGCAATGCGCCAGCCCCT
Found at i:32580378 original size:60 final size:59
Alignment explanation
Indices: 32580305--32580420 Score: 214
Period size: 60 Copynumber: 1.9 Consensus size: 59
32580295 TTGGTAGAAT
32580305 TTCCCTACAATAATAGTTACCAGACGAGTTTGAAGATGGCACCTTATGAAGCATTNGAAG
1 TTCCCTACAATAATAGTTACCAGACGAGTTTGAAGATGGCACCTTATGAAGCATT-GAAG
*
32580365 TTCCCTACAATAATAGTTATCAGACGAGTTTGAAGATGGCACCTTATGAAGCATTG
1 TTCCCTACAATAATAGTTACCAGACGAGTTTGAAGATGGCACCTTATGAAGCATTG
32580421 TACAGTCATA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
59 1 0.02
60 54 0.98
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (59 bp):
TTCCCTACAATAATAGTTACCAGACGAGTTTGAAGATGGCACCTTATGAAGCATTGAAG
Found at i:32582949 original size:27 final size:27
Alignment explanation
Indices: 32582918--32583095 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
32582908 TAAATTGTAC
32582918 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32582945 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
32582971 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32582999 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32583027 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32583054 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32583081 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32583096 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32583032 original size:82 final size:81
Alignment explanation
Indices: 32582919--32583069 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
32582909 AAATTGTACA
* *
32582919 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32582983 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
32583000 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
32583065 TGCGA
65 TGCGA
32583070 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:32588693 original size:8 final size:9
Alignment explanation
Indices: 32588671--32588698 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32588661 GTTGAGGAAT
32588671 TGGGGGAGG
1 TGGGGGAGG
32588680 TGGGGGAGG
1 TGGGGGAGG
32588689 TGGGGGAGG
1 TGGGGGAGG
32588698 T
1 T
32588699 TGAGCGTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.75, T:0.14
Consensus pattern (9 bp):
TGGGGGAGG
Found at i:32593355 original size:77 final size:77
Alignment explanation
Indices: 32593160--32593393 Score: 284
Period size: 77 Copynumber: 3.1 Consensus size: 77
32593150 TTTCGTAAAT
* * * * *
32593160 AATACAAAGTTTATTATTTAAATTG--CAAGAAACTCC-TAAATTTAATAATTGAAATA-GCGAA
1 AATACAAAGTTTACTATTTAAATTGTAAAAAAAAC-CCATAAAATTAATAACT-AAATAGGC-AA
32593221 AAAA-TCATTACATA
63 AAAAGTCATTACATA
**
32593235 AATACAAAGTTGT-CTATTTAAATTGTAAAAAAAAATTCATAAAATTAATAACTAAATAGGCAAA
1 AATACAAAGTT-TACTATTTAAATTGT-AAAAAAAACCCATAAAATTAATAACTAAATAGGCAAA
32593299 AAAGTCATTACATA
64 AAAGTCATTACATA
*
32593313 AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAA-ATGGAAAAA
1 AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAATA-GGCAAAA
*
32593377 AAGTCATTATATA
65 AAGTCATTACATA
32593390 AATA
1 AATA
32593394 TGAAGATATT
Statistics
Matches: 139, Mismatches: 11, Indels: 16
0.84 0.07 0.10
Matches are distributed among these distances:
75 22 0.16
76 2 0.01
77 62 0.45
78 53 0.38
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.30
Consensus pattern (77 bp):
AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAATAGGCAAAAA
AGTCATTACATA
Found at i:32593631 original size:33 final size:32
Alignment explanation
Indices: 32593588--32593660 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 32
32593578 AACTTGAGCA
* *
32593588 GGAAGTAGTGGAGTACAGTGGTGGATACAGGCT
1 GGAAGGAGTGGAGTACAGCGGTGGATA-AGGCT
* *
32593621 GGGAGGAGTGGAGTACAGCGGTGGATAGGGCT
1 GGAAGGAGTGGAGTACAGCGGTGGATAAGGCT
32593653 GGAAGGAG
1 GGAAGGAG
32593661 CAGAATATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
32 11 0.31
33 24 0.69
ACGTcount: A:0.26, C:0.08, G:0.49, T:0.16
Consensus pattern (32 bp):
GGAAGGAGTGGAGTACAGCGGTGGATAAGGCT
Found at i:32595839 original size:104 final size:102
Alignment explanation
Indices: 32595687--32596017 Score: 323
Period size: 104 Copynumber: 3.3 Consensus size: 102
32595677 ACATTATATA
* * *
32595687 AAAACTACATTA--AAAAAATCACAAAA-ACTAAACTAAACACTAAGAATTTATATAACTTAATC
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAA-TTATATAACCTAATC
32595749 ATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
65 ATAAA-TACTAACAAAATAACTATAAAATTATTTTTTTT
* *
32595788 AAAATTACTTTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATT-TATAACCTAATCC
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAAT--
* *
32595852 CATATAATACTAACAAAATAAATAACTAAAA-CA-TTTTTTT
64 CATA-AATACTAACAAAATAACT-A-TAAAATTATTTTTTTT
* * * * * * *
32595892 AAAA-GAAATTAC------ATTACTAAACAAT-AACAAAACACTAACAATTA-ATAACCAAATCA
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAATCA
**
32595948 TAAACTACTAACAAAATAACTATAAAATTATTTTTTGA
66 TAAA-TACTAACAAAATAACTATAAAATTATTTTTTTT
*
32595986 AAAATTTACATTACTAAAAACTCACAAAACAC
1 AAAA-TTACATTACTAAAAAATCACAAAACAC
32596018 AACAAATTAT
Statistics
Matches: 184, Mismatches: 26, Indels: 39
0.74 0.10 0.16
Matches are distributed among these distances:
92 5 0.03
93 4 0.02
94 28 0.15
96 32 0.17
97 9 0.05
101 10 0.05
102 18 0.10
103 21 0.11
104 48 0.26
105 4 0.02
106 5 0.03
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.28
Consensus pattern (102 bp):
AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAATCA
TAAATACTAACAAAATAACTATAAAATTATTTTTTTT
Found at i:32595935 original size:28 final size:29
Alignment explanation
Indices: 32595904--32595961 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
32595894 AAGAAATTAC
*
32595904 ATTACTAAACAATAACA-AAAC-ACTAACA
1 ATTAATAAACAA-AACATAAACTACTAACA
* *
32595932 ATTAATAACCAAATCATAAACTACTAACA
1 ATTAATAAACAAAACATAAACTACTAACA
32595961 A
1 A
32595962 AATAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 3 0.12
28 14 0.56
29 8 0.32
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (29 bp):
ATTAATAAACAAAACATAAACTACTAACA
Found at i:32596026 original size:91 final size:95
Alignment explanation
Indices: 32595825--32596022 Score: 241
Period size: 91 Copynumber: 2.1 Consensus size: 95
32595815 ACCCTAAACT
* *
32595825 AAACACTAACAATTTATAACCTAATCCCATATAATACTAACAAAATAAATAACTAAAACATTTTT
1 AAACACTAACAATTAATAACCAAAT-CCATATAATACTAACAAAATAAATAACTAAAACATTTTT
32595890 TTAAAAGAAATTACATTACTAAACAATAACA
65 TTAAAAGAAATTACATTACTAAACAATAACA
* *
32595921 AAACACTAACAATTAATAACCAAAT-CATA-AACTACTAACAAAATAACT-A-TAAAA-TTATTT
1 AAACACTAACAATTAATAACCAAATCCATATAA-TACTAACAAAATAAATAACTAAAACAT-TTT
* * *
32595981 TTTGAAA-AATTTACATTACTAAA-AACTCACA
64 TTTAAAAGAAATTACATTACTAAACAA-TAACA
32596012 AAACAC-AACAA
1 AAACACTAACAA
32596023 ATTATAATAA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
90 7 0.08
91 26 0.28
92 14 0.15
93 3 0.03
94 19 0.21
96 23 0.25
ACGTcount: A:0.55, C:0.17, G:0.01, T:0.27
Consensus pattern (95 bp):
AAACACTAACAATTAATAACCAAATCCATATAATACTAACAAAATAAATAACTAAAACATTTTTT
TAAAAGAAATTACATTACTAAACAATAACA
Found at i:32596071 original size:72 final size:72
Alignment explanation
Indices: 32595990--32596299 Score: 566
Period size: 72 Copynumber: 4.3 Consensus size: 72
32595980 TTTTGAAAAA
32595990 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
32596055 AAATAAT
66 AAATAAT
32596062 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
32596127 AAATAAT
66 AAATAAT
32596134 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
32596199 AAATAAT
66 AAATAAT
* **
32596206 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
32596271 AAATAAT
66 AAATAAT
* * *
32596278 TTTTCATTAATAAAAAATCACA
1 TTTACATTACTAAAAACTCACA
32596300 GAATACTAAA
Statistics
Matches: 232, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 232 1.00
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (72 bp):
TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
AAATAAT
Found at i:32596086 original size:41 final size:41
Alignment explanation
Indices: 32596040--32596230 Score: 134
Period size: 41 Copynumber: 5.1 Consensus size: 41
32596030 TAATTTACTG
32596040 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
* * * ** *
32596081 ACAAAACA--CAAC-AAATTATAATA-ATT--T----ACTG
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
32596112 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
* * * ** *
32596153 ACAAAACA--CAAC-AAATTATAATA-ATT--T----ACTG
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
32596184 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
32596225 ACAAAA
1 ACAAAA
32596231 CACAACAAAT
Statistics
Matches: 106, Mismatches: 24, Indels: 40
0.62 0.14 0.24
Matches are distributed among these distances:
31 20 0.19
33 6 0.06
34 16 0.15
35 8 0.08
37 8 0.08
38 16 0.15
39 6 0.06
41 26 0.25
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (41 bp):
ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
Found at i:32596364 original size:144 final size:144
Alignment explanation
Indices: 32595990--32596341 Score: 431
Period size: 144 Copynumber: 2.4 Consensus size: 144
32595980 TTTTGAAAAA
* * * * * * * *
32595990 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTAATAAAAAATCACAAAACACAACAAATCACAACAATTTACTAACAAAATACTAAACA
* * **
32596055 AAATAATTTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATA
66 AAATAATATTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATA
32596120 TTTAACAAAATAAT
131 TTTAACAAAATAAT
* * * * * * * *
32596134 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTAATAAAAAATCACAAAACACAACAAATCACAACAATTTACTAACAAAATACTAAACA
*
32596199 AAATAATTTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATA
66 AAATAATATTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATA
32596264 TTTAACAAAATAAT
131 TTTAACAAAATAAT
* * *
32596278 TTTTCATTAATAAAAAATCACAGAATACTA-AACTAAA-CACAACAATTTA-TAACATAATCCTA
1 TTTACATTAATAAAAAATCACA-AA-AC-ACAAC-AAATCACAACAATTTACTAACAAAATACTA
32596340 AA
62 AA
32596342 TTACTAATAA
Statistics
Matches: 190, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
144 160 0.84
145 12 0.06
146 14 0.07
147 4 0.02
ACGTcount: A:0.55, C:0.16, G:0.01, T:0.28
Consensus pattern (144 bp):
TTTACATTAATAAAAAATCACAAAACACAACAAATCACAACAATTTACTAACAAAATACTAAACA
AAATAATATTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATA
TTTAACAAAATAAT
Found at i:32596382 original size:60 final size:60
Alignment explanation
Indices: 32596311--32596434 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
32596301 AATACTAAAC
*
32596311 TAAACACAACAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
1 TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
*
32596371 TAAACACAACAATTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTA
1 TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
32596431 TAAA
1 TAAA
32596435 AAAATAAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (60 bp):
TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
Found at i:32596401 original size:27 final size:27
Alignment explanation
Indices: 32596310--32596401 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 27
32596300 GAATACTAAA
32596310 CTAAACACAACAATTTATAACATAATC
1 CTAAACACAACAATTTATAACATAATC
* * * * *
32596337 CTAAATTACTAATAAATTAATTTTAAAATAATT
1 CTAAA-CAC-AA-CAA-T--TTATAACATAATC
*
32596370 ATAAACACAACAATTTATAACATAATC
1 CTAAACACAACAATTTATAACATAATC
32596397 CTAAA
1 CTAAA
32596402 TTATTAACAA
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
27 19 0.40
28 2 0.04
29 3 0.06
30 4 0.09
31 3 0.06
32 2 0.04
33 14 0.30
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (27 bp):
CTAAACACAACAATTTATAACATAATC
Found at i:32597330 original size:6 final size:6
Alignment explanation
Indices: 32597300--32597490 Score: 115
Period size: 6 Copynumber: 31.0 Consensus size: 6
32597290 AAGAAACATT
* * *
32597300 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATAAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
32597347 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
32597398 ATCAGA ATCAGT ATTAGGTA A-CAGA ATCAGA ATCAAA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
32597447 ATTAGGTA A-CAGA ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
32597491 GTGTGAATGC
Statistics
Matches: 142, Mismatches: 26, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
5 10 0.07
6 112 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32597364 original size:31 final size:31
Alignment explanation
Indices: 32597321--32597490 Score: 139
Period size: 31 Copynumber: 5.3 Consensus size: 31
32597311 AATCAAAATG
*
32597321 AGAATCAGAATCAGAATAAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGT-----AA-C
* * *
32597358 AAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
32597389 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
32597420 AGAATCAGAATCAAAATTAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
32597450 AGGTAA-CAGAATCAAAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
32597482 AGAATCAGA
1 AGAATCAGA
32597491 GTGTGAATGC
Statistics
Matches: 112, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
29 2 0.02
30 4 0.04
31 74 0.66
32 6 0.05
33 2 0.02
37 24 0.21
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:32597373 original size:37 final size:37
Alignment explanation
Indices: 32597323--32597469 Score: 180
Period size: 37 Copynumber: 4.1 Consensus size: 37
32597313 TCAAAATGAG
* * * *
32597323 AATCAGAATCAGAATAAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
32597360 AATCAAAATCAGAATCAGAATTAGGTAACAG------
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
* * *
32597391 AATCAGAATCAGAATCAGTATTAGGTAACAGAATCAG
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
*
32597428 AATCAAAATTAGAATCAGAATTAGGTAACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
32597465 AATCA
1 AATCA
32597470 GTATCAGGTA
Statistics
Matches: 94, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
31 29 0.31
37 65 0.69
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
Found at i:32597401 original size:43 final size:42
Alignment explanation
Indices: 32597300--32597380 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
32597290 AAGAAACATT
* *
32597300 ATCAGA-ACTAGAATCAAAATGAGAATCAGAATCAGAATAAGA
1 ATCAGATAC-AGAATCAAAATCAAAATCAGAATCAGAATAAGA
*
32597342 ATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAAT
1 ATCAGAT-ACAGAATCAAAATCAAAATCAGAATCAGAAT
32597381 TAGGTAACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (42 bp):
ATCAGATACAGAATCAAAATCAAAATCAGAATCAGAATAAGA
Found at i:32597422 original size:68 final size:68
Alignment explanation
Indices: 32597321--32597476 Score: 240
Period size: 68 Copynumber: 2.3 Consensus size: 68
32597311 AATCAAAATG
* *
32597321 AGAATCAGAATCAGAATAAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
32597386 AAC
66 AAC
* * * *
32597389 AGAATCAGAATCAGAATCAGTATTAGGTAACAGAATCAGAATCAAAATTAGAATCAGAATTAGGT
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
32597454 AAC
66 AAC
* *
32597457 AGAATCAAAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
32597477 GTAACAGAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 80 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (68 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
AAC
Found at i:32597470 original size:25 final size:25
Alignment explanation
Indices: 32597440--32597488 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32597430 TCAAAATTAG
*
32597440 AATCAGAATTAGGTAACAGAATCAA
1 AATCAGAATCAGGTAACAGAATCAA
*
32597465 AATCAGTATCAGGTAACAGAATCA
1 AATCAGAATCAGGTAACAGAATCA
32597489 GAGTGTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGGTAACAGAATCAA
Found at i:32598053 original size:27 final size:27
Alignment explanation
Indices: 32598023--32598319 Score: 405
Period size: 27 Copynumber: 11.0 Consensus size: 27
32598013 GGGGTAAAAT
* * *
32598023 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32598050 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32598077 AGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32598104 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32598131 GGTAATTCTACCCCACAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32598158 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32598185 GGTAGTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32598212 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32598239 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32598266 GGTAATTTTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32598293 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
32598320 AATATTTTAC
Statistics
Matches: 236, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 236 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32598540 original size:54 final size:54
Alignment explanation
Indices: 32598481--32598738 Score: 356
Period size: 54 Copynumber: 4.8 Consensus size: 54
32598471 GGGGTGTTTT
* * * * * *
32598481 GGTAATTTTGTAAACCAAGAGTAAAACGATATTTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* *
32598535 AGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* *
32598589 GGTAATTTTATAAATCGAGGGTAAAAAGGTAGTTT-TGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTA-TTTCTATAAATCGAGGGTAAAAC
* * *
32598643 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* * *
32598697 GGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAAT
32598739 TGGGGGTACT
Statistics
Matches: 183, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 178 0.97
55 3 0.02
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
Found at i:32598746 original size:27 final size:27
Alignment explanation
Indices: 32598513--32598738 Score: 335
Period size: 27 Copynumber: 8.4 Consensus size: 27
32598503 AAAACGATAT
**
32598513 TTCTATAAATCGAGGGTAAAACAGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
* *
32598540 TTTTATAAATCGAGGGTAAAATGGTAT
1 TTCTATAAATCGAGGGTAAAATGGTAA
32598567 TTCTATAAATCGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
* * *
32598594 TTTTATAAATCGAGGGTAAAAAGGTAG
1 TTCTATAAATCGAGGGTAAAATGGTAA
* * * *
32598621 TTTTGTAAATCGAGGGTAAAACGATAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
32598648 TTCTATAAATCGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
*
32598675 TTCTATAAATCGAGGGTAAAACGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
*
32598702 TTCTATAAATTGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
32598729 TTCTATAAAT
1 TTCTATAAAT
32598739 TGGGGGTACT
Statistics
Matches: 179, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
TTCTATAAATCGAGGGTAAAATGGTAA
Found at i:32598772 original size:26 final size:26
Alignment explanation
Indices: 32598743--32598842 Score: 80
Period size: 26 Copynumber: 3.8 Consensus size: 26
32598733 ATAAATTGGG
*
32598743 GGTACTTTGATAATTTTACAATTTGA
1 GGTACTTTGATAATTTTACAATTCGA
*
32598769 GGTAC-TTCATTAATTTTACAA-TCGA
1 GGTACTTTGA-TAATTTTACAATTCGA
* * * *
32598794 CGGTA-TTTCGGTAATTTTATAAATCGGG
1 -GGTACTTT-GATAATTTTACAATTC-GA
*
32598822 GGTACTTTGGTAATTTTACAA
1 GGTACTTTGATAATTTTACAA
32598843 AGGTATTTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
25 6 0.10
26 32 0.53
27 18 0.30
28 4 0.07
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (26 bp):
GGTACTTTGATAATTTTACAATTCGA
Found at i:32598825 original size:27 final size:27
Alignment explanation
Indices: 32598331--32598893 Score: 235
Period size: 27 Copynumber: 21.1 Consensus size: 27
32598321 ATATTTTACG
* * * *
32598331 AATCGAGGGTTTTTCGATAATTTCACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * *
32598358 AATC-AGGGGTATTTTGGTAAATTTACA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* *
32598385 AA-CCAGGGGTATTTTGGTAATTTTATA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* ** *
32598412 AATCAAGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * * *
32598439 AACCAAGGGTATTTCAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * * *
32598466 AA-CCAGGGGTGTTTTGGTAATTTTGTA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* * * *** *
32598493 AACCAAGAGTAAAACGAT-ATTTCTATA
1 AATCGAGGGTATTTCGGTAATTT-TATA
*** *
32598520 AATCGAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
**
32598547 AATCGAGGGTAAAAT-GGT-ATTTCTATA
1 AATCGAGGGT-ATTTCGGTAATTT-TATA
**
32598574 AATCGAGGGTAAAAT-GGTAATTTTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
**** * *
32598601 AATCGAGGGTAAAAAGGTAGTTTTGTA
1 AATCGAGGGTATTTCGGTAATTTTATA
*** * *
32598628 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
** *
32598655 AATCGAGGGTAAAAT-GGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
*** *
32598682 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
* ** *
32598709 AATTGAGGGTAAAAT-GGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
* * * *
32598736 AATTGGGGGTACTTT-GATAATTTTACA
1 AATCGAGGGTA-TTTCGGTAATTTTATA
* * * ** *
32598763 ATTTGA-GGTACTTCATTAATTTTA-C
1 AATCGAGGGTATTTCGGTAATTTTATA
*
32598788 AATCGACGGTATTTCGGTAATTTTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
* *
32598815 AATCGGGGGTACTTT-GGTAATTTTA-C
1 AATCGAGGGTA-TTTCGGTAATTTTATA
* *
32598841 AA---A-GGTATTTCAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
32598864 AATCGAGGGTATTTCGGTAATTTTAGTA
1 AATCGAGGGTATTTCGGTAATTTTA-TA
32598892 AA
1 AA
32598894 CTAAAGTATT
Statistics
Matches: 437, Mismatches: 73, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.01
22 13 0.03
23 2 0.00
25 6 0.01
26 49 0.11
27 337 0.77
28 27 0.06
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (27 bp):
AATCGAGGGTATTTCGGTAATTTTATA
Found at i:32598867 original size:49 final size:49
Alignment explanation
Indices: 32598795--32598888 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
32598785 TACAATCGAC
* * *
32598795 GGTATTTCGGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAA
1 GGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTCGGTAATTTTACAAA
32598844 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTA
1 GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTA
32598889 GTAAACTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 3 0.07
49 38 0.93
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (49 bp):
GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAA
Found at i:32599079 original size:17 final size:18
Alignment explanation
Indices: 32599059--32599093 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
32599049 AACTTACCCA
32599059 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
32599076 ATTGGGCCCATATGGCCC
1 ATTGGGCCCATATGGCCC
32599094 CTTTCGGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:32599104 original size:19 final size:17
Alignment explanation
Indices: 32599063--32599105 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
32599053 TACCCAATTG
*
32599063 GGCCCATAGGCCCATTG
1 GGCCCATAGGCCCATTC
*
32599080 GGCCCATATGGCCCCTTTC
1 GGCCCATA-GG-CCCATTC
32599099 GGCCCAT
1 GGCCCAT
32599106 CGCGGCTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 2 0.09
19 12 0.55
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.21
Consensus pattern (17 bp):
GGCCCATAGGCCCATTC
Found at i:32605628 original size:17 final size:16
Alignment explanation
Indices: 32605602--32605633 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32605592 TGTAAAAGTT
32605602 AGGTTCTAATAGCTAA
1 AGGTTCTAATAGCTAA
32605618 AGGTGTCTAATAGCTA
1 AGGT-TCTAATAGCTA
32605634 TAAAACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (16 bp):
AGGTTCTAATAGCTAA
Found at i:32606870 original size:10 final size:10
Alignment explanation
Indices: 32606845--32606903 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
32606835 TCAGCTAAAG
*
32606845 TCAGCTCACT
1 TCAGCTCATT
* *
32606855 TGAGCTTATT
1 TCAGCTCATT
*
32606865 TCAGCTCGTT
1 TCAGCTCATT
*
32606875 TGAGCTCATT
1 TCAGCTCATT
32606885 TCAGCTTCATT
1 TCAGC-TCATT
32606896 TCAGCTCA
1 TCAGCTCA
32606904 ATTACTTAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 29 0.74
11 10 0.26
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (10 bp):
TCAGCTCATT
Found at i:32607090 original size:20 final size:21
Alignment explanation
Indices: 32607049--32607086 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
32607039 ATTAACTAAG
32607049 TTTATATTAAATGTGTTATAA
1 TTTATATTAAATGTGTTATAA
*
32607070 TTTA-ATTATATGT-TTAT
1 TTTATATTAAATGTGTTAT
32607087 TAATGTGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 8 0.50
21 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTATATTAAATGTGTTATAA
Found at i:32610759 original size:40 final size:40
Alignment explanation
Indices: 32610714--32610981 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
32610704 GCAAACACAT
*
32610714 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32610754 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32610794 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
32610834 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32610874 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32610914 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32610954 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
32610982 TCCAATGCTC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32617461 original size:40 final size:40
Alignment explanation
Indices: 32617363--32617652 Score: 404
Period size: 40 Copynumber: 7.3 Consensus size: 40
32617353 TCCTCGTTCA
* * * ** *
32617363 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
32617402 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32617442 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32617482 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
32617522 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
32617562 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * ** * *
32617602 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAACAACTCGCACG
32617642 AATGCCTTCGG
1 AATGCCTTCGG
32617653 ATCTTAGTCC
Statistics
Matches: 236, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 34 0.14
40 198 0.84
41 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:32617665 original size:80 final size:79
Alignment explanation
Indices: 32617361--32617705 Score: 383
Period size: 80 Copynumber: 4.3 Consensus size: 79
32617351 GCTCCTCGTT
* * * ** * *
32617361 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
*
32617425 ATTTAACAACTCGCA
66 ATTTAA-TACTCGCA
*
32617440 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
*
32617505 ATTTAACAACTCGCA
66 ATTTAA-TACTCGCA
*
32617520 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
*
32617585 ATTTAGTATCTCGCA
66 ATTTAATA-CTCGCA
* * ** * * **
32617600 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAACAACTCGCACGAATGCCTTCGGGA-CTTAACCC
* * *
32617663 GGATATATTCACTTAGCA
64 GGATTTAAT-AC-TCGCA
*
32617681 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
32617706 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
79 39 0.17
80 184 0.78
81 13 0.06
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
ATTTAATACTCGCA
Found at i:32617689 original size:120 final size:120
Alignment explanation
Indices: 32617361--32617705 Score: 367
Period size: 120 Copynumber: 2.9 Consensus size: 120
32617351 GCTCCTCGTT
* * * * ** * *
32617361 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
32617425 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
66 ATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * *
32617480 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * * ** *
32617545 ATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
66 ATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* ** * **
32617600 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAAGGCCTTCGGGACTTAACCCGG-ATTTAACAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
32617663 GGATATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 GGATATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
32617706 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
119 37 0.19
120 149 0.76
121 10 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (120 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:32617714 original size:41 final size:41
Alignment explanation
Indices: 32617637--32617714 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32617627 TTTGTATCTC
* * *
32617637 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32617678 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32617715 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32625483 original size:40 final size:39
Alignment explanation
Indices: 32625385--32625607 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
32625375 TCCTCGTTCA
* * * * *
32625385 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
32625424 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
32625463 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
32625503 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
32625543 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
32625584 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32625608 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:32625607 original size:120 final size:119
Alignment explanation
Indices: 32625385--32625607 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
32625375 TCCTCGTTCA
* * * *
32625385 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
32625450 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
32625504 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
32625568 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
32625608 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32636367 original size:17 final size:17
Alignment explanation
Indices: 32636342--32636383 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
32636332 TACTTGGGTG
32636342 GCAAGAAATCAACACAA
1 GCAAGAAATCAACACAA
*
32636359 GCAATAAATCAACACAA
1 GCAAGAAATCAACACAA
32636376 GC-AGAAAT
1 GCAAGAAAT
32636384 TCATAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.57, C:0.21, G:0.12, T:0.10
Consensus pattern (17 bp):
GCAAGAAATCAACACAA
Found at i:32638213 original size:6 final size:6
Alignment explanation
Indices: 32638190--32638238 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
32638180 CTCTTTTTGC
* * **
32638190 TCTTTT TCATTC TCTTTT TCTTTT TCGATT TCTTTT TCTGTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCT-TTT TCTTTT
32638239 CATTACAAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
6 28 0.82
7 6 0.18
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.73
Consensus pattern (6 bp):
TCTTTT
Found at i:32638239 original size:18 final size:18
Alignment explanation
Indices: 32638190--32638234 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 18
32638180 CTCTTTTTGC
32638190 TCTTTTTC-ATTCTCTTTT
1 TCTTTTTCGATT-TCTTTT
32638208 TCTTTTTCGATTTCTTTT
1 TCTTTTTCGATTTCTTTT
32638226 TCTGTTTTC
1 TCT-TTTTC
32638235 TTTTCATTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.71
Consensus pattern (18 bp):
TCTTTTTCGATTTCTTTT
Found at i:32640738 original size:6 final size:6
Alignment explanation
Indices: 32640729--32640799 Score: 54
Period size: 6 Copynumber: 11.8 Consensus size: 6
32640719 AACAGCATGT
* ** * * *
32640729 GAAAAA GAAAAA CAAAAA GAAATT GAAAAA GAAAAT GAACAT GAAAGAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAA-AA
* *
32640778 -AACAA GAAAAT GAAAAA GAAAA
1 GAAAAA GAAAAA GAAAAA GAAAA
32640800 TGAGAGTGGG
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
5 2 0.04
6 46 0.94
7 1 0.02
ACGTcount: A:0.73, C:0.04, G:0.15, T:0.07
Consensus pattern (6 bp):
GAAAAA
Found at i:32640757 original size:12 final size:12
Alignment explanation
Indices: 32640728--32640802 Score: 73
Period size: 12 Copynumber: 6.2 Consensus size: 12
32640718 AAACAGCATG
32640728 TGAAAAAGAAAA
1 TGAAAAAGAAAA
** *
32640740 ACAAAAAGAAAT
1 TGAAAAAGAAAA
32640752 TGAAAAAGAAAA
1 TGAAAAAGAAAA
* *
32640764 TGAACATG-AAA
1 TGAAAAAGAAAA
32640775 -GAAAACAAGAAAA
1 TG-AAA-AAGAAAA
32640788 TGAAAAAGAAAA
1 TGAAAAAGAAAA
32640800 TGA
1 TGA
32640803 GAGTGGGAGT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
10 1 0.02
11 5 0.10
12 36 0.73
13 6 0.12
14 1 0.02
ACGTcount: A:0.71, C:0.04, G:0.16, T:0.09
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:32643953 original size:27 final size:26
Alignment explanation
Indices: 32643936--32644005 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
32643926 ATATTAAGTC
32643936 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
32643963 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
32643991 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32644006 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:32643999 original size:28 final size:28
Alignment explanation
Indices: 32643936--32644033 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32643926 ATATTAAGTC
*
32643936 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32643963 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32643991 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32644020 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32644034 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32644491 original size:2 final size:2
Alignment explanation
Indices: 32644484--32644513 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
32644474 CATACTTGTG
*
32644484 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32644514 CTTCGGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32646784 original size:17 final size:17
Alignment explanation
Indices: 32646742--32646778 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32646732 TTGGGCTTGT
* *
32646742 AATCTGTTTTCTCCCGA
1 AATCTGTTCTCTCCCAA
32646759 AATCTGTTCTCTCCCAA
1 AATCTGTTCTCTCCCAA
32646776 AAT
1 AAT
32646779 TGGTTCATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.30, G:0.08, T:0.38
Consensus pattern (17 bp):
AATCTGTTCTCTCCCAA
Found at i:32651035 original size:23 final size:22
Alignment explanation
Indices: 32650984--32651035 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
32650974 CCTCGTCTTT
*
32650984 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
32651006 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
32651029 TTCTTTT
1 TTCTTTT
32651036 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:32657887 original size:40 final size:40
Alignment explanation
Indices: 32657789--32658091 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
32657779 TCCTCGTTCA
* * * * *
32657789 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32657828 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32657868 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32657908 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32657948 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32657988 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32658028 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32658068 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32658092 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32665816 original size:40 final size:40
Alignment explanation
Indices: 32665771--32666198 Score: 712
Period size: 40 Copynumber: 10.7 Consensus size: 40
32665761 GCAAACACAT
*
32665771 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32665811 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32665851 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32665891 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
32665931 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32665971 TTGCTTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32666011 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32666051 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32666091 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32666131 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32666171 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
32666199 TCCAATGCTC
Statistics
Matches: 371, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 371 1.00
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32669238 original size:30 final size:28
Alignment explanation
Indices: 32669204--32669259 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
32669194 GTGATTAAAT
32669204 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
32669234 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
32669260 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:32671215 original size:18 final size:17
Alignment explanation
Indices: 32671192--32671230 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
32671182 CTCTTTTTGC
32671192 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
32671210 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
32671228 TCT
1 TCT
32671231 ATCTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:32679076 original size:13 final size:13
Alignment explanation
Indices: 32679058--32679083 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32679048 TCCTAAAGTC
32679058 AAAAAATTAAATT
1 AAAAAATTAAATT
32679071 AAAAAATTAAATT
1 AAAAAATTAAATT
32679084 TTTTTACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAAATTAAATT
Found at i:32697019 original size:24 final size:24
Alignment explanation
Indices: 32696992--32697037 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
32696982 GGACATGATT
32696992 TTGTTAAATGAAATAATAAAAAAA
1 TTGTTAAATGAAATAATAAAAAAA
32697016 TTGTTAAATGAAATAATAAAAA
1 TTGTTAAATGAAATAATAAAAA
32697038 TTGAGCTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (24 bp):
TTGTTAAATGAAATAATAAAAAAA
Found at i:32697350 original size:19 final size:21
Alignment explanation
Indices: 32697322--32697366 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
32697312 ATAACATAAT
* *
32697322 AAAAATTAAT-GATATAACCC
1 AAAAATTAATAAAAATAACCC
32697342 AAAAA-TAATAAAAATAACCC
1 AAAAATTAATAAAAATAACCC
32697362 AAAAA
1 AAAAA
32697367 ATAGATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.67, C:0.13, G:0.02, T:0.18
Consensus pattern (21 bp):
AAAAATTAATAAAAATAACCC
Found at i:32697535 original size:25 final size:25
Alignment explanation
Indices: 32697504--32697571 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
32697494 CTGTTTCAGG
32697504 GCAGAGGAGTGTCGACGGTGATGCA
1 GCAGAGGAGTGTCGACGGTGATGCA
* **
32697529 GTAGAGGAGTGTCGACGGTGATGGG
1 GCAGAGGAGTGTCGACGGTGATGCA
*
32697554 GCAGAGGAGTGTTGACGG
1 GCAGAGGAGTGTCGACGG
32697572 CGGTGCAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.22, C:0.12, G:0.49, T:0.18
Consensus pattern (25 bp):
GCAGAGGAGTGTCGACGGTGATGCA
Found at i:32701880 original size:28 final size:27
Alignment explanation
Indices: 32701823--32701974 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
32701813 TAAATTGTGC
*
32701823 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
32701850 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
32701878 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32701905 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
32701933 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
32701960 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32701975 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:32701887 original size:55 final size:55
Alignment explanation
Indices: 32701823--32701974 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
32701813 TAAATTGTGC
*
32701823 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
32701878 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
32701933 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
32701975 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:32709362 original size:32 final size:32
Alignment explanation
Indices: 32709311--32709376 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
32709301 TTTTACAAAA
*
32709311 AATTTACAAACTTCTATCTCCCTAATTATTTT
1 AATTAACAAACTTCTATCTCCCTAATTATTTT
*
32709343 AATTAACAAACATTC-ATCTCTCTAATTATTTT
1 AATTAACAAAC-TTCTATCTCCCTAATTATTTT
32709375 AA
1 AA
32709377 AATAGCTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 28 0.90
33 3 0.10
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (32 bp):
AATTAACAAACTTCTATCTCCCTAATTATTTT
Found at i:32710995 original size:40 final size:40
Alignment explanation
Indices: 32710943--32711053 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
32710933 TCAAAGTTAT
* * * *
32710943 CGAAGTATAAATAGGGGTACGTAAGTGCATTTAGGGGTAT
1 CGAAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAC
* **
32710983 CGCAA-TACAAATAGAGGCATATATGTGCATTTAGGGGTAC
1 CG-AAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAC
32711023 CGAAGTACAAATAGGGGCACGTATGTGCATT
1 CGAAGTACAAATAGGGGCACGTATGTGCATT
32711054 CATTCTATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 55 0.93
41 2 0.03
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (40 bp):
CGAAGTACAAATAGGGGCACGTATGTGCATTTAGGGGTAC
Found at i:32713092 original size:200 final size:201
Alignment explanation
Indices: 32712733--32713127 Score: 659
Period size: 200 Copynumber: 2.0 Consensus size: 201
32712723 ACGAGTGAAA
32712733 GATTTGGATATGCCGAAAACTACATTCAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
1 GATTTGGATATGCCGAAAACTACATTCAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
*
32712798 ATTTGGTTTAACGGAAGCACCTACAGTATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
66 ATTTGGTTTAACGGAAGCACCTACAATATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
32712863 TTAGATAGATTTGTTGTGGTATTTCTTGATGATATTTTGATATATTCTTGAGATGAGACTAAACA
131 TTAGATAGATTTGTTGTGGTATTTCTTGATGATATTTTGATATATTCTTGAGATGAGACTAAACA
32712928 ATACTC
196 ATACTC
* ** * * *
32712934 GATTTGGATGTGCTTAAAACTACATTTAGAACCAGGTCCGGACACTATGAATTTCTTGTGATGCT
1 GATTTGGATATGCCGAAAACTACATTCAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
* * *
32712999 GTTTGGTTTAAC-TAACGCACCTCCAATA-TTTATGGATTTGATGAACAGAATCTTCAGACCGTA
66 ATTTGGTTTAACGGAA-GCACCTACAATATTTTATGGATTTGATGAACAGAATCTTCAGACCGTA
* *
32713062 TTTAGATAGATTTTTTGTGGTATTTCTTGATGATATTTTGATATATTCTTGAGATGAGACTGAAC
130 TTTAGATAGATTTGTTGTGGTATTTCTTGATGATATTTTGATATATTCTTGAGATGAGACTAAAC
32713127 A
195 A
32713128 TGCCGAGCAT
Statistics
Matches: 181, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
200 101 0.56
201 80 0.44
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.37
Consensus pattern (201 bp):
GATTTGGATATGCCGAAAACTACATTCAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
ATTTGGTTTAACGGAAGCACCTACAATATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
TTAGATAGATTTGTTGTGGTATTTCTTGATGATATTTTGATATATTCTTGAGATGAGACTAAACA
ATACTC
Found at i:32714795 original size:115 final size:115
Alignment explanation
Indices: 32714592--32714819 Score: 431
Period size: 115 Copynumber: 2.0 Consensus size: 115
32714582 GTTTAACCTG
32714592 AATCAGGTAAAGAATTTGTGATTTTTAGGGATGCATCATTGAATGGGTTAGATTGTGTTTTAATG
1 AATCAGGTAAAGAATTTGTGATTTTTAGGGATGCATCATTGAATGGGTTAGATTGTGTTTTAATG
32714657 CAAGAAGGAAAAACGATAACTTATGCTTCCAGAAGTTTGAATAAGTACTT
66 CAAGAAGGAAAAACGATAACTTATGCTTCCAGAAGTTTGAATAAGTACTT
32714707 AATCAGGTAAAGAATTTGTGATTTTTAGGGATGCATCATTGAATGGGTTAGATTGTGTTTTAATG
1 AATCAGGTAAAGAATTTGTGATTTTTAGGGATGCATCATTGAATGGGTTAGATTGTGTTTTAATG
*
32714772 CAAGAAGGAAAAAC-AGTAGCTTATGCTTCCAGAAGTTTGAATAAGTAC
66 CAAGAAGGAAAAACGA-TAACTTATGCTTCCAGAAGTTTGAATAAGTAC
32714820 CAATGGTTTG
Statistics
Matches: 111, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
114 1 0.01
115 110 0.99
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (115 bp):
AATCAGGTAAAGAATTTGTGATTTTTAGGGATGCATCATTGAATGGGTTAGATTGTGTTTTAATG
CAAGAAGGAAAAACGATAACTTATGCTTCCAGAAGTTTGAATAAGTACTT
Found at i:32716402 original size:164 final size:164
Alignment explanation
Indices: 32716126--32716452 Score: 618
Period size: 164 Copynumber: 2.0 Consensus size: 164
32716116 GAGTATCTCG
32716126 ATACATTTCTAGAGGAGTTACTTGGATTATCGCCAAATAGACAGGTCGAGTTTGCTATAGAACTT
1 ATACATTTCTAGAGGAGTTACTTGGATTATCGCCAAATAGACAGGTCGAGTTTGCTATAGAACTT
32716191 GTACCGAGAACATCGCCGAGATCGATAACACCTTAGAGAATGGCTCCTATACAGTTAAAAGAGTT
66 GTACCGAGAACATCGCCGAGATCGATAACACCTTAGAGAATGGCTCCTATACAGTTAAAAGAGTT
32716256 GAAAACACAGTTACAAGAATTGACAGACATGGGA
131 GAAAACACAGTTACAAGAATTGACAGACATGGGA
* **
32716290 ATACTTTTCTAGAGGAGTTACTTGGATTATCGCTGAATAGACAGGTCGAGTTTGCTATAGAACTT
1 ATACATTTCTAGAGGAGTTACTTGGATTATCGCCAAATAGACAGGTCGAGTTTGCTATAGAACTT
32716355 GTACCGAGAACATCGCCGAGATCGATAACACCTTAGAGAATGGCTCCTATACAGTTAAAAGAGTT
66 GTACCGAGAACATCGCCGAGATCGATAACACCTTAGAGAATGGCTCCTATACAGTTAAAAGAGTT
*
32716420 GAAAGCACAGTTACAAGAATTGACAGACATGGG
131 GAAAACACAGTTACAAGAATTGACAGACATGGG
32716453 TTTTGCTCGA
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
164 159 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (164 bp):
ATACATTTCTAGAGGAGTTACTTGGATTATCGCCAAATAGACAGGTCGAGTTTGCTATAGAACTT
GTACCGAGAACATCGCCGAGATCGATAACACCTTAGAGAATGGCTCCTATACAGTTAAAAGAGTT
GAAAACACAGTTACAAGAATTGACAGACATGGGA
Found at i:32716749 original size:30 final size:30
Alignment explanation
Indices: 32716715--32716776 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
32716705 AACTAGATAC
*
32716715 GGACACTATGAATTTCTTGGGATCCTGTTT
1 GGACACTATGAATTTCTTGGGACCCTGTTT
32716745 GGACACTATGAATTTCTTGGGACCCTGTTT
1 GGACACTATGAATTTCTTGGGACCCTGTTT
32716775 GG
1 GG
32716777 TTTAACTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (30 bp):
GGACACTATGAATTTCTTGGGACCCTGTTT
Found at i:32716968 original size:28 final size:28
Alignment explanation
Indices: 32716937--32716991 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
32716927 TACATTTAGA
*
32716937 ACCAGGTACGGACACTATGAATTTCTTC
1 ACCAGGTACAGACACTATGAATTTCTTC
*
32716965 ACCAGGTCCAGACACTATGAATTTCTT
1 ACCAGGTACAGACACTATGAATTTCTT
32716992 GTAATGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
ACCAGGTACAGACACTATGAATTTCTTC
Found at i:32717095 original size:228 final size:230
Alignment explanation
Indices: 32716676--32717109 Score: 640
Period size: 228 Copynumber: 1.9 Consensus size: 230
32716666 ACGAGTGAAA
* * *
32716676 GATTTGGATGTGCCAAAAACTACATTTAGAACTAGATACGGACACTATGAATTTCTTGGGATCCT
1 GATTTGGATGTGCCAAAAACTACATTTAGAACCAGATACGGACACTATGAATTTCTT-GCATCCG
*** *
32716741 GTTTGGACACTATGAATTTCTTGGGACCCTGTTTGGTTTAACTAAAGCACCTCCAGTATTTTATG
65 GTCCAGACACTATGAATTTCTTGGAACCCTGTTTGGTTTAACTAAAGCACCTCCAGTATTTTATG
* * *
32716806 GATTTGATGAACAGAATCTTCAGACCGTATTTAGATAGATTTGTTGTGGTATTTCTTGATGATAT
130 GATTTGATGAACAGAATCTTCAGACCATATTTAGACAGATTTGTTGTGGTATTTATTGATGATAT
32716871 TTTGATATATTCTTGAGATGAGACTAAACAATACTC
195 TTTGATATATTCTTGAGATGAGACTAAACAATACTC
** *
32716907 GATTTGGATGTGCTTAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTT-CA-CCAG
1 GATTTGGATGTGCCAAAAACTACATTTAGAACCAGATACGGACACTATGAATTTCTTGCATCC-G
* *** *
32716970 GTCCAGACACTATGAATTTCTTGTAATGTTGTTTGGTTTAACTAATGCACCTCCAGTA-TTTATG
65 GTCCAGACACTATGAATTTCTTGGAACCCTGTTTGGTTTAACTAAAGCACCTCCAGTATTTTATG
* * *
32717034 GATTTGATGAATAGAATCTTCAGACCATATTTAGACATATTTTTTGTGGTATTTATTGATGATAT
130 GATTTGATGAACAGAATCTTCAGACCATATTTAGACAGATTTGTTGTGGTATTTATTGATGATAT
32717099 TTTGATATATT
195 TTTGATATATT
32717110 TTTTTATATA
Statistics
Matches: 181, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
228 78 0.43
229 50 0.28
231 53 0.29
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (230 bp):
GATTTGGATGTGCCAAAAACTACATTTAGAACCAGATACGGACACTATGAATTTCTTGCATCCGG
TCCAGACACTATGAATTTCTTGGAACCCTGTTTGGTTTAACTAAAGCACCTCCAGTATTTTATGG
ATTTGATGAACAGAATCTTCAGACCATATTTAGACAGATTTGTTGTGGTATTTATTGATGATATT
TTGATATATTCTTGAGATGAGACTAAACAATACTC
Found at i:32718666 original size:200 final size:200
Alignment explanation
Indices: 32718316--32718708 Score: 626
Period size: 200 Copynumber: 2.0 Consensus size: 200
32718306 CGAGTGAAAG
*
32718316 ATTTGGATGTGCCGAAAACTACATTTAGAACCAGGTACAGACACTATGAATTTCTTATGATCCTG
1 ATTTCGATGTGCCGAAAACTACATTTAGAACCAGGTACAGACACTATGAATTTCTTATGATCCTG
* * * * *
32718381 TTTGTTTTAACTAATGCACATCCAGTATTTATGGATTTGATGAATAGGATGTTCAGACCGTATTT
66 TTTGGTTTAACTAATGCACATCCAGTATTTATGGATTTGATGAACAGAATCTTCAGACCATATTT
*
32718446 AGACAGATTTGTTATGGTATTTATTGATGATATTTTGATATATTGTTGAGATGAGACTGAACAAT
131 AGACAGATTTGTTATGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAGACTGAACAAT
32718511 GCTCA
196 GCTCA
** * * *
32718516 ATTTCGATGTGCTTAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTG
1 ATTTCGATGTGCCGAAAACTACATTTAGAACCAGGTACAGACACTATGAATTTCTTATGATCCTG
*
32718581 TTTGGTTTAACTAATGCACCTCCAGTATTTATGGATTTGATGAACAGAATCTTCAGACCATATTT
66 TTTGGTTTAACTAATGCACATCCAGTATTTATGGATTTGATGAACAGAATCTTCAGACCATATTT
* * *
32718646 AGACATATCTT-TTGTGGTATTTATTGATGATATTTTTATATATTCTTGAGATGAGACTGAACA
131 AGACAGAT-TTGTTATGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAGACTGAACA
32718709 CGCCGAGCAT
Statistics
Matches: 176, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
200 174 0.99
201 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (200 bp):
ATTTCGATGTGCCGAAAACTACATTTAGAACCAGGTACAGACACTATGAATTTCTTATGATCCTG
TTTGGTTTAACTAATGCACATCCAGTATTTATGGATTTGATGAACAGAATCTTCAGACCATATTT
AGACAGATTTGTTATGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAGACTGAACAAT
GCTCA
Found at i:32719985 original size:200 final size:201
Alignment explanation
Indices: 32719603--32719992 Score: 685
Period size: 200 Copynumber: 1.9 Consensus size: 201
32719593 ACGAGTGAAA
32719603 GATTTGGATGTGCCAAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
1 GATTTGGATGTGCCAAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
32719668 GTTTGGTTTAACTGAAGCACCTCCAGTATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
66 GTTTGGTTTAACTGAAGCACCTCCAGTATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
*
32719733 TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATATATTCTTGAGATAAGACTAAACA
131 TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATAGATTCTTGAGATAAGACTAAACA
32719798 ATGCTT
196 ATGCTT
** * * *
32719804 GATTTGGATGTGCTTAAAACTACATTTAGAACTAGGTCCGGACACTATGAATTTCTTGTGATGCT
1 GATTTGGATGTGCCAAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
32719869 GTTTGGTTTAACT-AATGCACCTCCAGTA-TTTATGGATTTGATGAACAGAATCTTCAGACCGTA
66 GTTTGGTTTAACTGAA-GCACCTCCAGTATTTTATGGATTTGATGAACAGAATCTTCAGACCGTA
* *
32719932 TTTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTTATAGATTCTTGAGATGAGACT
130 TTTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATAGATTCTTGAGATAAGACT
32719993 GAGCATGCCG
Statistics
Matches: 180, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
200 95 0.53
201 85 0.47
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (201 bp):
GATTTGGATGTGCCAAAAACTACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
GTTTGGTTTAACTGAAGCACCTCCAGTATTTTATGGATTTGATGAACAGAATCTTCAGACCGTAT
TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATAGATTCTTGAGATAAGACTAAACA
ATGCTT
Found at i:32721190 original size:200 final size:200
Alignment explanation
Indices: 32720847--32721816 Score: 1814
Period size: 200 Copynumber: 4.8 Consensus size: 200
32720837 AAGACTGATC
* *
32720847 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCACCTCT
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
* *
32720912 AGTATTTATGGATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTGTTGTGGTATTTA
66 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
*
32720977 TTGATGATATTTTGATATATTATTGAGATGAGTCTAAACAATGCTCGATTTGGATGTGCTTAAAA
131 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
32721042 CTACA
196 CTACA
* *
32721047 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCACCTCT
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
* *
32721112 AGTATTTATGGATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTGTTGTGGTATTTA
66 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
32721177 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
131 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
32721242 CTACA
196 CTACA
32721247 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
32721312 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
66 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
* *
32721377 TTGATGATATTTTTATATATTCTTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
131 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
32721442 CTACA
196 CTACA
32721447 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
32721512 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
66 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
32721577 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
131 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
32721642 CTACA
196 CTACA
32721647 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
32721712 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
66 AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
* * *
32721777 TTGATGATATTTTTATATATTCTTGAGATGAGACTGAACA
131 TTGATGATATTTTGATATATTATTGAGATGAGACTAAACA
32721817 CGCCGAGCAT
Statistics
Matches: 758, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 758 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (200 bp):
TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
AGTATTTATGTATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTTTTGTGGTATTTA
TTGATGATATTTTGATATATTATTGAGATGAGACTAAACAATGCTCGATTTGGATGTGCTTAAAA
CTACA
Found at i:32723037 original size:200 final size:200
Alignment explanation
Indices: 32722679--32723046 Score: 628
Period size: 200 Copynumber: 1.8 Consensus size: 200
32722669 AAGACTGATC
* *
32722679 TTTAGAACGAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCAGCTCC
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCACCTCC
*
32722744 AGTATTTATGGATTTGATGAATAGAATCTTCAGATCGTATTTAGACAGATTTGTTGTGGAATTTA
66 AGTATTTATGGATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTGTTGTGGAATTTA
*
32722809 TTGATGATATTTTGATATATTATTGAGATGAGACTGAATAATGCTCGATTTGGATGTGCTTAAAA
131 TTGATGATATTTTGAAATATTATTGAGATGAGACTGAATAATGCTCGATTTGGATGTGCTTAAAA
32722874 CTATA
196 CTATA
* *
32722879 TTTAGAACCAGGTACGGACACTATGTATTTCTTGTGATGCTGTTTGGTTTAACTAATGCACCTCC
1 TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCACCTCC
* * * *
32722944 AGTATTTATGGATTTGATGAATAGAATCTTTAGACCGTATTTAGAGAGATTTTTTGTGGTATTTA
66 AGTATTTATGGATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTGTTGTGGAATTTA
* *
32723009 TTGATGATATTTTTAAATATTCTTGAGATGAGACTGAA
131 TTGATGATATTTTGAAATATTATTGAGATGAGACTGAA
32723047 CACGCCGAGC
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
200 156 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (200 bp):
TTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCTGTTTGGTTTAACTAATGCACCTCC
AGTATTTATGGATTTGATGAATAGAATCTTCAGACCGTATTTAGACAGATTTGTTGTGGAATTTA
TTGATGATATTTTGAAATATTATTGAGATGAGACTGAATAATGCTCGATTTGGATGTGCTTAAAA
CTATA
Done.