Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 121 of 141
Found at i:35904030 original size:87 final size:86
Alignment explanation
Indices: 35903867--35904030 Score: 206
Period size: 87 Copynumber: 1.9 Consensus size: 86
35903857 TAATGGTCAA
* * * * * *
35903867 AGAGTCTTTTTGATGCATTTTATAGTTCAAGTATCCAATTGAGTGTAAAAACAAAGTAGAGGCTT
1 AGAGCCTTTTTGATGCATTTTAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAAAGCAGAGGCTT
**
35903932 AATTTTTTTTTTTTAAGTTTG
66 AATTTGCTTTTTTTAAGTTTG
*
35903953 AGAGCCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTTAGTGCAAAAAAAAAAGCAG-GGA
1 AGAGCCTTTTTGATGCATTTT-AAAGTTCAAGTACCCAATTGAGTG-AAAAAAAAAAGCAGAGG-
35904017 CTTAA-TTGCTTTTT
63 CTTAATTTGCTTTTT
35904031 AAGGTTTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
86 20 0.30
87 30 0.45
88 16 0.24
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (86 bp):
AGAGCCTTTTTGATGCATTTTAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAAAGCAGAGGCTT
AATTTGCTTTTTTTAAGTTTG
Found at i:35904060 original size:3 final size:3
Alignment explanation
Indices: 35904054--35904078 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
35904044 CACCTTAAGC
35904054 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
35904079 ATCACGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:35904981 original size:29 final size:31
Alignment explanation
Indices: 35904918--35904986 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
35904908 GTATATTATT
** *
35904918 TGGTACCTGTACTTTCATAAAATGTCTGATG
1 TGGTACCTGTACTTTCATAAAATGTCCAATA
*
35904949 TGGTACTTGTACTTT-A-AAAATGTCCAATA
1 TGGTACCTGTACTTTCATAAAATGTCCAATA
35904978 TGGTACCTG
1 TGGTACCTG
35904987 AACTAGAGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 18 0.55
30 1 0.03
31 14 0.42
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (31 bp):
TGGTACCTGTACTTTCATAAAATGTCCAATA
Found at i:35905202 original size:21 final size:21
Alignment explanation
Indices: 35905176--35905215 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
35905166 AATAAACACC
35905176 AAAAAA-AATTTTAGAAAATTA
1 AAAAAAGAATTTTA-AAAATTA
*
35905197 AAAAAAGTATTTTAAAAAT
1 AAAAAAGAATTTTAAAAAT
35905216 ATTTTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAAAGAATTTTAAAAATTA
Found at i:35905208 original size:22 final size:19
Alignment explanation
Indices: 35905176--35905215 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 19
35905166 AATAAACACC
35905176 AAAAAAAATTTTAGAAAATT
1 AAAAAAAATTTTA-AAAATT
35905196 AAAAAAAGTATTTTAAAAAT
1 AAAAAAA--ATTTTAAAAAT
35905216 ATTTTAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AAAAAAAATTTTAAAAATT
Found at i:35905214 original size:31 final size:31
Alignment explanation
Indices: 35905178--35905273 Score: 124
Period size: 31 Copynumber: 3.0 Consensus size: 31
35905168 TAAACACCAA
*
35905178 AAAAAATTTTAGAAAATTAAAAAAAGTATTTT
1 AAAATATTTTAGAAAA-TAAAAAAAGTATTTT
35905210 AAAAATATTTTAG-AAATAAAAAAAGTATTTT
1 -AAAATATTTTAGAAAATAAAAAAAGTATTTT
*
35905241 AAAATATTTTTA-AAAATAAAAAAAATATATTT
1 AAAATA-TTTTAGAAAATAAAAAAAGTAT-TTT
35905273 A
1 A
35905274 TTATATTTGG
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.10
31 34 0.59
32 7 0.12
33 11 0.19
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (31 bp):
AAAATATTTTAGAAAATAAAAAAAGTATTTT
Found at i:35905245 original size:19 final size:19
Alignment explanation
Indices: 35905210--35905246 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
35905200 AAAGTATTTT
35905210 AAAAATATTTTAGAAATAA
1 AAAAATATTTTAGAAATAA
35905229 AAAAAGTATTTTA-AAATA
1 AAAAA-TATTTTAGAAATA
35905247 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAAATATTTTAGAAATAA
Found at i:35905560 original size:29 final size:31
Alignment explanation
Indices: 35905500--35905561 Score: 110
Period size: 29 Copynumber: 2.1 Consensus size: 31
35905490 GTGTATTATT
35905500 TGGTACTTGTACTTTCATAAAATGTCTAATG
1 TGGTACTTGTACTTTCATAAAATGTCTAATG
35905531 TGGTACTTGTACTTT-A-AAAATGTCTAATG
1 TGGTACTTGTACTTTCATAAAATGTCTAATG
35905560 TG
1 TG
35905562 ATACCTAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 15 0.48
30 1 0.03
31 15 0.48
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (31 bp):
TGGTACTTGTACTTTCATAAAATGTCTAATG
Found at i:35905638 original size:91 final size:91
Alignment explanation
Indices: 35905477--35905681 Score: 286
Period size: 91 Copynumber: 2.2 Consensus size: 91
35905467 CTCTAACTTG
* * ** *
35905477 AACTAATCAATTTGTGTATTATTTGGTACTTGTACTTTCATAAAATGTCTAATGTGGTACTTGTA
1 AACT-ATCAATTTGTGTATTATTCGGTACCTGTACTTTCATAAAATGTCTAATGTAATACTTATA
* *
35905542 CTTTAAAAAT-GTCTAATGTGATACCTA
65 ATTTAAAAATATTC-AATGTGATACCTA
*
35905569 AACTATCAATTTGAGTATTATTCGGTACCTGTACTTTCATAAAATGTCTAATGTAATACTTATAA
1 AACTATCAATTTGTGTATTATTCGGTACCTGTACTTTCATAAAATGTCTAATGTAATACTTATAA
* *
35905634 TTTAAAAATATTCAATGTGGTACTTA
66 TTTAAAAATATTCAATGTGATACCTA
*
35905660 AACTATCAATCTGTGTATTATT
1 AACTATCAATTTGTGTATTATT
35905682 ATATTACTTG
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 94 0.94
92 6 0.06
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (91 bp):
AACTATCAATTTGTGTATTATTCGGTACCTGTACTTTCATAAAATGTCTAATGTAATACTTATAA
TTTAAAAATATTCAATGTGATACCTA
Found at i:35920435 original size:27 final size:27
Alignment explanation
Indices: 35920397--35920462 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
35920387 ACGCATTATG
35920397 ATCCCATGTTTAACA-T-CCTATCGGACT
1 ATCCCATGTTTAA-AGTCCCTA-CGGACT
*
35920424 ATCCCTTGTTTAAAGTCCCTACGGACT
1 ATCCCATGTTTAAAGTCCCTACGGACT
* *
35920451 ACCCCGTGTTTA
1 ATCCCATGTTTA
35920463 TTGTCTTGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.03
27 29 0.85
28 4 0.12
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (27 bp):
ATCCCATGTTTAAAGTCCCTACGGACT
Found at i:35924719 original size:45 final size:45
Alignment explanation
Indices: 35924668--35924984 Score: 404
Period size: 45 Copynumber: 6.9 Consensus size: 45
35924658 TCGACCATGG
* * * *
35924668 TGCTTCCTCAATTTGTT-CATTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCA-TGAATTATGCATGATGTTGGTCAAA
* *
35924713 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* *
35924758 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGAATTATGCATGA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGG-----T-CA-AA
*
35924810 TG-TTGGTCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTT--CCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
35924856 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
35924901 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* * * **
35924946 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
35924985 TCCACCTCTT
Statistics
Matches: 246, Mismatches: 15, Indels: 22
0.87 0.05 0.08
Matches are distributed among these distances:
45 196 0.80
46 5 0.02
47 4 0.02
48 1 0.00
51 4 0.02
52 3 0.01
53 33 0.13
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:35924802 original size:18 final size:18
Alignment explanation
Indices: 35924779--35924815 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
35924769 ATTCTTCCAT
35924779 GAATTATGCATGATGTTG
1 GAATTATGCATGATGTTG
35924797 GAATTATGCATGATGTTG
1 GAATTATGCATGATGTTG
35924815 G
1 G
35924816 TCTCAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.38
Consensus pattern (18 bp):
GAATTATGCATGATGTTG
Found at i:35928647 original size:16 final size:16
Alignment explanation
Indices: 35928626--35928657 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35928616 ATTTTGTTGC
*
35928626 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
35928642 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
35928658 CTTTCAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:35929090 original size:101 final size:102
Alignment explanation
Indices: 35928878--35929101 Score: 233
Period size: 101 Copynumber: 2.2 Consensus size: 102
35928868 AATGATACCG
* * *
35928878 GTTCACATAGTAGCCTACAAATAGTACTACACATGTGACCATCACTATCCGATACATGTAGTAGC
1 GTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
* * **
35928943 CTGCACATAGTACGACATACGTGATCGAAGCTATCTG
66 CTGCACATAGTACGACACACGTGATCCAAGCTATCAC
* * * * *
35928980 GTACGCATAGTAGCTTACACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAG
1 GTTCACATAGTAGCCTACACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAG
* *
35929043 CCTGCACATCA-TACTACACACGTGA-CCATCA-CTTTCAC
65 CCTGCACAT-AGTACGACACACGTGATCCA--AGCTATCAC
* *
35929081 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTAGCCTACACA
35929102 CAGTCCATGC
Statistics
Matches: 99, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
100 2 0.02
101 55 0.56
102 38 0.38
103 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (102 bp):
GTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
CTGCACATAGTACGACACACGTGATCCAAGCTATCAC
Found at i:35931922 original size:42 final size:42
Alignment explanation
Indices: 35931842--35931923 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
35931832 CGTTTTCTCT
* **
35931842 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
35931884 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
35931924 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:35944559 original size:69 final size:69
Alignment explanation
Indices: 35944454--35944718 Score: 293
Period size: 69 Copynumber: 3.8 Consensus size: 69
35944444 TGCAGAATCT
* ** *
35944454 ATTGGTTGT-CATATTCGAGCTATGGTCTTATGCCTTATAATCCTCATGTTTACTATCCTAACAG
1 ATTGGTT-TCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCCTGACAG
35944518 ACTCC
65 ACTCC
* * * * * * *
35944523 GTTAGTTTCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTGTCCCGACGGG
1 ATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCCTGACAGA
35944588 CTCC
66 CTCC
* * * * * * *
35944592 ATTGGTTGCCATAATTGAGCTATGGTCTTACACCTTAT-ATTCTCCGTGTTTACTATCCTGGCAA
1 ATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTATAATCCT-CATGTTTACTATCCTGACAG
35944656 ACTCC
65 ACTCC
* * *
35944661 ATTGGTTGT-CATAGCCTAGCTATGGTCTTACACTTTATAATCCTCATGTTTACTATCC
1 ATTGGTT-TCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCC
35944719 CGGTAGATGC
Statistics
Matches: 159, Mismatches: 33, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
68 5 0.03
69 150 0.94
70 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (69 bp):
ATTGGTTTCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCCTGACAGA
CTCC
Found at i:35944682 original size:138 final size:138
Alignment explanation
Indices: 35944454--35944720 Score: 351
Period size: 138 Copynumber: 1.9 Consensus size: 138
35944444 TGCAGAATCT
* ** *
35944454 ATTGGTTGTCATATTCGAGCTATGGTCTTATGCCTTATAATCCTCATGTTTACTATCCTAACAGA
1 ATTGGTTGCCATATTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCCTAACAAA
* * *
35944519 CTCCGTTAGTTTCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTGTCCCGA
66 CTCCATTAGTTTCCATAGCCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTATCCCGA
35944584 CGGGCTCC
131 CGGGCTCC
* * **
35944592 ATTGGTTGCCATAATT-GAGCTATGGTCTTACACCTTAT-ATTCTCCGTGTTTACTATCCTGGCA
1 ATTGGTTGCCAT-ATTCGAGCTATGGTCTTACACCTTATAATCCT-CATGTTTACTATCCTAACA
* * * *
35944655 AACTCCATTGGTTGT-CATAGCCTAGCTATGGTCTTACACTTTATAATCCTCATGTTTACTATCC
64 AACTCCATTAGTT-TCCATAGCCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTATCC
35944719 CG
128 CG
35944721 GTAGATGCTA
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
137 4 0.04
138 103 0.93
139 4 0.04
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (138 bp):
ATTGGTTGCCATATTCGAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTATCCTAACAAA
CTCCATTAGTTTCCATAGCCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTATCCCGA
CGGGCTCC
Found at i:35944734 original size:69 final size:69
Alignment explanation
Indices: 35944445--35944759 Score: 269
Period size: 69 Copynumber: 4.6 Consensus size: 69
35944435 TATTGTCCTT
* ** * **
35944445 GCAGAATCTATTGGTTGTCATATTCGAGCTATGGTCTTATGCCTTATAATCCTCATGTTTACTAT
1 GCAGACTCTATTGGTTGTCATAGCCTAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTAT
**
35944510 CCTA
66 CCCG
* ** * * * * *
35944514 ACAGACTCCGTTAGTT-TCCATAGTCGAGCTATGGTCTTACACCTTATAATCCTAATGTTTACTG
1 GCAGACTCTATTGGTTGT-CATAGCCTAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTA
35944578 TCCCG
65 TCCCG
* * * * * ** * *
35944583 ACGGGCTCCATTGGTTGCCATA-ATTGAGCTATGGTCTTACACCTTAT-ATTCTCCGTGTTTACT
1 GCAGACTCTATTGGTTGTCATAGCCT-AGCTATGGTCTTACACCTTATAATCCT-CATGTTTACT
*
35944646 ATCCTG
64 ATCCCG
* * *
35944652 GCAAACTCCATTGGTTGTCATAGCCTAGCTATGGTCTTACACTTTATAATCCTCATGTTTACTAT
1 GCAGACTCTATTGGTTGTCATAGCCTAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTAT
35944717 CCCG
66 CCCG
* * * *
35944721 GTAGA-TGCTATTGGCTGTCATAGCATAGCTATTGTCTTA
1 GCAGACT-CTATTGGTTGTCATAGCCTAGCTATGGTCTTA
35944760 TATCTTAAAC
Statistics
Matches: 197, Mismatches: 42, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
68 6 0.03
69 186 0.94
70 5 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (69 bp):
GCAGACTCTATTGGTTGTCATAGCCTAGCTATGGTCTTACACCTTATAATCCTCATGTTTACTAT
CCCG
Found at i:35950821 original size:19 final size:19
Alignment explanation
Indices: 35950797--35950835 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
35950787 ACACAATGAG
*
35950797 CAGTATCGAGTTAGCACAC
1 CAGTATCAAGTTAGCACAC
35950816 CAGTATCAAGTTAGCACAC
1 CAGTATCAAGTTAGCACAC
35950835 C
1 C
35950836 TTCTAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (19 bp):
CAGTATCAAGTTAGCACAC
Found at i:35963299 original size:15 final size:14
Alignment explanation
Indices: 35963279--35963309 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
35963269 TATATGTAGG
35963279 TATAATAATATATAA
1 TATAATAATA-ATAA
35963294 TATAATAATAATAA
1 TATAATAATAATAA
35963308 TA
1 TA
35963310 ACAAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAATAATAATAA
Found at i:35963774 original size:23 final size:22
Alignment explanation
Indices: 35963731--35963788 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
35963721 AAAGGGTATC
* *
35963731 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
35963752 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
35963775 TACATATCATATCT
1 TACAAATCATATCT
35963789 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:35963791 original size:19 final size:19
Alignment explanation
Indices: 35963744--35963847 Score: 100
Period size: 21 Copynumber: 5.1 Consensus size: 19
35963734 AAATTAAATC
*
35963744 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
35963764 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
35963786 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
35963807 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
35963828 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
35963847 T
1 T
35963848 TTAGGATTGG
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.24
21 39 0.52
22 7 0.09
23 11 0.15
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:35963804 original size:21 final size:21
Alignment explanation
Indices: 35963778--35963842 Score: 130
Period size: 21 Copynumber: 3.1 Consensus size: 21
35963768 CTAAGATTAC
35963778 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35963799 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35963820 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35963841 AT
1 AT
35963843 CATATTTAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:35963855 original size:19 final size:19
Alignment explanation
Indices: 35963767--35963862 Score: 120
Period size: 21 Copynumber: 4.8 Consensus size: 19
35963757 AATCATATCT
*
35963767 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
35963786 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
35963807 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
35963828 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* * *
35963847 TTTAGGATTGGATATC
1 TCTAAGATTGCATATC
35963863 CTCGAAGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 31 0.44
21 40 0.56
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:35964421 original size:44 final size:42
Alignment explanation
Indices: 35964138--35964427 Score: 171
Period size: 44 Copynumber: 6.7 Consensus size: 42
35964128 ATTTGATGTG
** * * *
35964138 ATCTGCTCTGCTGCAACTTCAAAGAGATAAGATCCATGGTTCTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT-CTTGATT-TA
* * * *
35964182 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TCTT-GATTTA
35964226 ATCTGCTCCACTGCAACTTCATG-GAGATAAGAT-TTGTCATCTTCA
1 ATCTGCTCCACTGCAACTTCA-GAGAGATAAGATCTTG--AT-TT-A
* *
35964271 GTCTGC-CTCACTGCAACTTCAG-GAGGATAAGA-CTTGCTTACTTA
1 ATCTGCTC-CACTGCAACTTCAGAGA-GATAAGATCTTG---ATTTA
* * * * * * ***
35964315 GTCTGTTCCACTGTAACTTTAGGGAGATAAGA-CTAGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTGATTTA
* **
35964356 ATCTGCT-CTCTTTAACTTCAGAGAGATAAGATCTGTGATATTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-TGAT-TTA
*
35964399 ATCCGCTCCACTGCAACTTCAGAGAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
35964428 GGGTTGTCAG
Statistics
Matches: 194, Mismatches: 35, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
40 20 0.10
41 9 0.05
42 5 0.03
43 8 0.04
44 111 0.57
45 39 0.20
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTGATTTA
Found at i:35964600 original size:132 final size:132
Alignment explanation
Indices: 35964437--35965888 Score: 2357
Period size: 132 Copynumber: 11.0 Consensus size: 132
35964427 AGGGTTGTCA
* * *
35964437 GCTTTAATCTGCTTCCCACTATCTTGGAAAGATATGATTTGCCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
*
35964502 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35964567 TG
131 TG
* * *
35964569 GCCTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG-CTGTCTTCAATCTGCTCCACTAT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-GTCTTCGATCTGCTCCACTAC
*
35964633 TTCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTG
65 TGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTG
*
35964698 GTA
130 GTG
*
35964701 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCATTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* * *
35964766 GCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAAGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35964831 TG
131 TG
* * *
35964833 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
*
35964898 GCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35964963 TG
131 TG
* * * * *
35964965 ACTTAAATCTGCTTCCCACTATCTTAGAAATATAAGATTTGTTGTCTTTGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
*
35965030 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
*
35965095 GG
131 TG
* * *
35965097 GCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATCTGCTCTACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* *
35965162 GCTTAAGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965227 TG
131 TG
* * * *
35965229 GCTTAAATCTGCTTCCCACTATCTTAGAAATATAAGATTTGTTGTCTTTGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
*
35965294 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965359 TG
131 TG
* *
35965361 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATCTGCTCTACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* *
35965426 GCTTAAGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965491 TG
131 TG
* * * * *
35965493 GCTTAAATTTGCTTCCCACTATCTTGGAAAGATAATATTTGCCATCTTCGATCTGCCCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* ** ** *
35965558 GTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTACTGCTATTCAGGGAGACAAGGCTTCG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965623 TG
131 TG
* * *
35965625 GCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTTGTTTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* * * *
35965690 ACTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCTGTTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965755 TG
131 TG
35965757 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
* * *
35965822 GCCTAGGGAGAAAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
35965887 TG
131 TG
35965889 TTTCACCAGT
Statistics
Matches: 1222, Mismatches: 96, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
131 1 0.00
132 1220 1.00
133 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
TG
Found at i:35964646 original size:44 final size:44
Alignment explanation
Indices: 35964466--35965838 Score: 287
Period size: 44 Copynumber: 31.2 Consensus size: 44
35964456 TATCTTGGAA
* * *
35964466 AGATATGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
35964510 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
35964554 AGACAAGGCTTGGTGGCCTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
35964598 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTATTTCTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
35964642 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
35964686 AGACAAGGCTTGGTAG-CTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCT-GTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
35964730 AGATAAGATTTG-TCGTCTTCGATCTGCTCCATTACTGCTTAGGG
1 AGATAAGATTTGCT-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
35964774 AGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAAGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
35964818 AGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTG-CT-CCACTACTGCTTAGG-G
* **
35964862 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
35964906 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * **
35964950 AGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
* * **
35964994 ATATAAGATTTGTTGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
35965038 AGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
35965082 AGACAAGGCTTGGGGGCTTAAATTTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
35965126 AGATAAGATTTG-TCATCTTCGATCTGCTCTACTACTGCTTAAGG
1 AGATAAGATTTGCT-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
35965170 AGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * **
35965214 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
* * **
35965258 ATATAAGATTTGTTGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
35965302 AGATAAGATCTACAATCTTCAACCTACTTCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
35965346 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
35965390 AGATAAGATTTG-TCATCTTCGATCTGCTCTACTACTGCTTAAGG
1 AGATAAGATTTGCT-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
35965434 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
35965478 AGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** * * *
35965522 AGATAATATTTGCCATCTTCGATCTGCCCCACTACTGTTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
35965566 AGATAAGATCTACAATCTTCAACCTACTCTACTGCT-ATTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTT-AGGG
* ** * * * *
35965610 AGACAAGGCTT-CGTGGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGC-TGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
35965654 AGATAAGATTTGTTGTTTTCGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *** * *
35965698 AGATAAGATCTACAATCTTCAACCTTCTCTGTTGCTGCTCAGGG
1 AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
35965742 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
35965786 AGATAAGATTTG-TCGTCTTCGATCTGCTCCACTACTGCCTAGGG
1 AGATAAGATTTGCT-GTCTTCAATCTGCTCCACTACTGCTTAGGG
*
35965830 AGAAAAGAT
1 AGATAAGAT
35965839 CTACAATCTT
Statistics
Matches: 872, Mismatches: 390, Indels: 134
0.62 0.28 0.10
Matches are distributed among these distances:
42 57 0.07
43 41 0.05
44 702 0.81
45 36 0.04
46 36 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:35972181 original size:52 final size:51
Alignment explanation
Indices: 35972083--35972187 Score: 122
Period size: 51 Copynumber: 2.0 Consensus size: 51
35972073 TTATAAAACT
* * *
35972083 TATATATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATAAATA
1 TATACATATAAAATACATAATGCATTTATCAAAAAAAGGAAAATATAAATA
* * * *
35972134 TATACATATAAAATATATTCATGCATTTA-CAAAAAAATGAAATATATAAGTA
1 TATACATATAAAATACA-TAATGCATTTATCAAAAAAAGGAAA-ATATAAATA
35972186 TA
1 TA
35972188 ATATAAAACG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
51 25 0.56
52 20 0.44
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (51 bp):
TATACATATAAAATACATAATGCATTTATCAAAAAAAGGAAAATATAAATA
Found at i:35972462 original size:3 final size:3
Alignment explanation
Indices: 35972454--35972493 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
35972444 ATATGTAGGT
*
35972454 ATA ATA ATA ATA TATA AT- ATA ATA ATA AAA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
35972494 CAAAATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:35972477 original size:15 final size:12
Alignment explanation
Indices: 35972456--35972507 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
35972446 ATGTAGGTAT
35972456 AATAATAATATATA
1 AATAATAATA-A-A
35972470 ATATAATAATAAA
1 A-ATAATAATAAA
35972483 AATAATAATAACA
1 AATAATAATAA-A
*
35972496 AA-ATTAATAAA
1 AATAATAATAAA
35972507 A
1 A
35972508 TAGACTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
11 2 0.06
12 17 0.49
13 5 0.14
14 2 0.06
15 9 0.26
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:35972748 original size:19 final size:21
Alignment explanation
Indices: 35972710--35972748 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
35972700 CCTTTTTTAA
*
35972710 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
35972731 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
35972749 AAAGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:35972973 original size:21 final size:21
Alignment explanation
Indices: 35972947--35973001 Score: 96
Period size: 19 Copynumber: 2.7 Consensus size: 21
35972937 AATCATATCT
35972947 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
35972968 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
35972987 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
35973002 CCTCGAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 19 0.59
21 13 0.41
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:35973012 original size:17 final size:18
Alignment explanation
Indices: 35972950--35973012 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
35972940 CATATCTTCT
*
35972950 AAGATTGCATATATCATATCT
1 AAGATTGC--ATATCA-ATCG
*
35972971 AAGATTGCATATCATATCT
1 AAGATTGCATATCA-ATCG
*
35972990 AAGATTGCATATC-CTCG
1 AAGATTGCATATCAATCG
35973007 AAGATT
1 AAGATT
35973013 ATGTTTCCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.20
19 24 0.60
21 8 0.20
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
AAGATTGCATATCAATCG
Found at i:35975401 original size:20 final size:20
Alignment explanation
Indices: 35975378--35975480 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
35975368 TACTTCGGTA
35975378 CCCCTGTTTGCACATTAGTG
1 CCCCTGTTTGCACATTAGTG
* * *
35975398 CCCCTGTTTGTAC-TTCGGTA
1 CCCCTGTTTGCACATT-AGTG
* *
35975418 CCTCTATTTGCACATTAGTG
1 CCCCTGTTTGCACATTAGTG
* * * * *
35975438 CCCCTGATTGTACTTTGGTA
1 CCCCTGTTTGCACATTAGTG
* *
35975458 CCCCTGTTTGCGCATCAGTG
1 CCCCTGTTTGCACATTAGTG
35975478 CCC
1 CCC
35975481 TTGATTGTAC
Statistics
Matches: 59, Mismatches: 22, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
19 2 0.03
20 55 0.93
21 2 0.03
ACGTcount: A:0.14, C:0.31, G:0.19, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGCACATTAGTG
Found at i:35975409 original size:40 final size:40
Alignment explanation
Indices: 35975354--35975582 Score: 228
Period size: 40 Copynumber: 5.7 Consensus size: 40
35975344 GAAACGAAGA
*
35975354 AGTGCCCCTAATTGTACTTCGGTACCCCTGTTTGCACATT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * *
35975394 AGTGCCCCTGTTTGTACTTCGGTACCTCTATTTGCACATT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * *
35975434 AGTGCCCCTGATTGTACTTTGGTACCCCTGTTTGCGCATC
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * **
35975474 AGTGCCCTTGATTGTACCTCGGTACCCCTGAATGCACATCT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACAT-T
* * * * *
35975515 -GTGCCCCT-ATTTGCACTTCGGTGCCCTTGATTACACATT
1 AGTGCCCCTGA-TTGTACTTCGGTACCCCTGTTTGCACATT
* * * * * *
35975554 CGTGCTCCTAATTGCACTTTGGTGCCCCT
1 AGTGCCCCTGATTGTACTTCGGTACCCCT
35975583 TTTCTGCATC
Statistics
Matches: 158, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.01
40 155 0.98
41 1 0.01
ACGTcount: A:0.15, C:0.31, G:0.19, T:0.35
Consensus pattern (40 bp):
AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
Found at i:35980172 original size:21 final size:21
Alignment explanation
Indices: 35980147--35980194 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
35980137 AATCCATGCA
35980147 AAATTTGAGTA-TTTTAATAGC
1 AAATTTGAGTAGTTTTAATA-C
* *
35980168 AAATTT-TGTAGTTTTATTAC
1 AAATTTGAGTAGTTTTAATAC
35980188 AAATTTG
1 AAATTTG
35980195 TACAGTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (21 bp):
AAATTTGAGTAGTTTTAATAC
Found at i:35982679 original size:23 final size:22
Alignment explanation
Indices: 35982636--35982693 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
35982626 AAAGGGTATC
* *
35982636 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
35982657 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
35982680 TACATATCATATCT
1 TACAAATCATATCT
35982694 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:35982696 original size:19 final size:19
Alignment explanation
Indices: 35982649--35982752 Score: 100
Period size: 21 Copynumber: 5.1 Consensus size: 19
35982639 AAATTAAATC
*
35982649 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
35982669 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
35982691 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
35982712 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
35982733 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
35982752 T
1 T
35982753 TTAGGATTGG
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.24
21 39 0.52
22 7 0.09
23 11 0.15
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:35982709 original size:21 final size:21
Alignment explanation
Indices: 35982683--35982747 Score: 130
Period size: 21 Copynumber: 3.1 Consensus size: 21
35982673 CTAAGATTAC
35982683 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35982704 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35982725 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
35982746 AT
1 AT
35982748 CATATTTAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:35982760 original size:19 final size:19
Alignment explanation
Indices: 35982672--35982767 Score: 120
Period size: 21 Copynumber: 4.8 Consensus size: 19
35982662 AATCATATCT
*
35982672 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
35982691 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
35982712 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
35982733 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* * *
35982752 TTTAGGATTGGATATC
1 TCTAAGATTGCATATC
35982768 CTCGAAGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 31 0.44
21 40 0.56
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:35983326 original size:44 final size:42
Alignment explanation
Indices: 35983043--35983332 Score: 171
Period size: 44 Copynumber: 6.7 Consensus size: 42
35983033 ATTTGATGTG
** * * *
35983043 ATCTGCTCTGCTGCAACTTCAAAGAGATAAGATCCATGGTTCTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT-CTTGATT-TA
* * * *
35983087 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TCTT-GATTTA
35983131 ATCTGCTCCACTGCAACTTCATG-GAGATAAGAT-TTGTCATCTTCA
1 ATCTGCTCCACTGCAACTTCA-GAGAGATAAGATCTTG--AT-TT-A
* *
35983176 GTCTGC-CTCACTGCAACTTCAG-GAGGATAAGA-CTTGCTTACTTA
1 ATCTGCTC-CACTGCAACTTCAGAGA-GATAAGATCTTG---ATTTA
* * * * * * ***
35983220 GTCTGTTCCACTGTAACTTTAGGGAGATAAGA-CTAGATGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTGATTTA
* **
35983261 ATCTGCT-CTCTTTAACTTCAGAGAGATAAGATCTGTGATATTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-TGAT-TTA
*
35983304 ATCCGCTCCACTGCAACTTCAGAGAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
35983333 GGGTTGTCAG
Statistics
Matches: 194, Mismatches: 35, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
40 20 0.10
41 9 0.05
42 5 0.03
43 8 0.04
44 111 0.57
45 39 0.20
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTTGATTTA
Found at i:35983506 original size:132 final size:132
Alignment explanation
Indices: 35983342--35984363 Score: 1920
Period size: 132 Copynumber: 7.7 Consensus size: 132
35983332 AGGGTTGTCA
* * * * * *
35983342 GCTTTAATCTGCTTCCCACTATCTTGGAAAGATATGATTTGCCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
*
35983407 GCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35983472 TG
131 TG
35983474 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
35983539 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35983604 TG
131 TG
35983606 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
35983671 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35983736 TG
131 TG
35983738 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
35983803 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35983868 TG
131 TG
35983870 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
35983935 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35984000 TG
131 TG
35984002 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
35984067 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35984132 TG
131 TG
35984134 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
*
35984199 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGG
66 TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
35984264 TG
131 TG
* * *
35984266 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTG-TCGTCTTCGATCTGCTCCATTAC
1 GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCT-GTCTTCAATCTGCTCCACTAT
*
35984330 TGCTTAGGGAGATAAGATCTACAATCTTCAACCT
65 TTCTTAGGGAGATAAGATCTACAATCTTCAACCT
35984364 TGCAATTAGG
Statistics
Matches: 877, Mismatches: 12, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
131 1 0.00
132 876 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
GCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATT
TCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAGGCTTGG
TG
Found at i:35985166 original size:20 final size:20
Alignment explanation
Indices: 35985143--35985245 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
35985133 TACTTCGGTA
35985143 CCCCTGTTTGCACATTAGTG
1 CCCCTGTTTGCACATTAGTG
* * *
35985163 CCCCTGTTTGTAC-TTCGGTA
1 CCCCTGTTTGCACATT-AGTG
* *
35985183 CCTCTATTTGCACATTAGTG
1 CCCCTGTTTGCACATTAGTG
* * * * *
35985203 CCCCTGATTGTACTTTGGTA
1 CCCCTGTTTGCACATTAGTG
* *
35985223 CCCCTGTTTGCGCATCAGTG
1 CCCCTGTTTGCACATTAGTG
35985243 CCC
1 CCC
35985246 TTGATTGTAC
Statistics
Matches: 59, Mismatches: 22, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
19 2 0.03
20 55 0.93
21 2 0.03
ACGTcount: A:0.14, C:0.31, G:0.19, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGCACATTAGTG
Found at i:35985174 original size:40 final size:40
Alignment explanation
Indices: 35985119--35985347 Score: 228
Period size: 40 Copynumber: 5.7 Consensus size: 40
35985109 GAAACGAAGA
*
35985119 AGTGCCCCTAATTGTACTTCGGTACCCCTGTTTGCACATT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * *
35985159 AGTGCCCCTGTTTGTACTTCGGTACCTCTATTTGCACATT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * *
35985199 AGTGCCCCTGATTGTACTTTGGTACCCCTGTTTGCGCATC
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
* * **
35985239 AGTGCCCTTGATTGTACCTCGGTACCCCTGAATGCACATCT
1 AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACAT-T
* * * * *
35985280 -GTGCCCCT-ATTTGCACTTCGGTGCCCTTGATTACACATT
1 AGTGCCCCTGA-TTGTACTTCGGTACCCCTGTTTGCACATT
* * * * * *
35985319 CGTGCTCCTAATTGCACTTTGGTGCCCCT
1 AGTGCCCCTGATTGTACTTCGGTACCCCT
35985348 TTTCTGCATC
Statistics
Matches: 158, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.01
40 155 0.98
41 1 0.01
ACGTcount: A:0.15, C:0.31, G:0.19, T:0.35
Consensus pattern (40 bp):
AGTGCCCCTGATTGTACTTCGGTACCCCTGTTTGCACATT
Found at i:35989937 original size:21 final size:21
Alignment explanation
Indices: 35989912--35989959 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
35989902 AATCCATGCA
35989912 AAATTTGAGTA-TTTTAATAGC
1 AAATTTGAGTAGTTTTAATA-C
* *
35989933 AAATTT-TGTAGTTTTATTAC
1 AAATTTGAGTAGTTTTAATAC
35989953 AAATTTG
1 AAATTTG
35989960 TACAGTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (21 bp):
AAATTTGAGTAGTTTTAATAC
Found at i:35997021 original size:40 final size:40
Alignment explanation
Indices: 35996966--35997046 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
35996956 ATTCAAGCAC
35996966 GTTGAAGTACACTTATCTTCCTATTAAAAGGTTGAGAAGA
1 GTTGAAGTACACTTATCTTCCTATTAAAAGGTTGAGAAGA
*
35997006 GTTGAAGTGCACTTATCTTCCTATTAAAAGGTTGAGAAGA
1 GTTGAAGTACACTTATCTTCCTATTAAAAGGTTGAGAAGA
35997046 G
1 G
35997047 CTGTACCTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (40 bp):
GTTGAAGTACACTTATCTTCCTATTAAAAGGTTGAGAAGA
Found at i:35998038 original size:10 final size:11
Alignment explanation
Indices: 35998000--35998038 Score: 55
Period size: 10 Copynumber: 3.6 Consensus size: 11
35997990 AACAAATCCT
35998000 CTCTCATATTTC
1 CTCTCA-ATTTC
35998012 CTCTCAA-TTC
1 CTCTCAATTTC
35998022 CTCTCAATTTC
1 CTCTCAATTTC
35998033 CT-TCAA
1 CTCTCAA
35998039 AAATTCGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 14 0.54
11 6 0.23
12 6 0.23
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.44
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:35998082 original size:51 final size:51
Alignment explanation
Indices: 35998015--35998125 Score: 197
Period size: 51 Copynumber: 2.2 Consensus size: 51
35998005 ATATTTCCTC
*
35998015 TCAA-TTCCTCTCAATTTCCTTCAAAAATTCGCTCAAATGCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCAAAAATTCGCTCAAATCCATATTTAATT
*
35998065 TCAATTTCCTCTCAATTTCCTTCAAAAATTCTCTCAAATCCATATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCAAAAATTCGCTCAAATCCATATTTAATT
35998116 TCAATTTCCT
1 TCAATTTCCT
35998126 TTTTTAAAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
50 4 0.07
51 54 0.93
ACGTcount: A:0.31, C:0.25, G:0.02, T:0.42
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCAAAAATTCGCTCAAATCCATATTTAATT
Found at i:36000264 original size:7 final size:7
Alignment explanation
Indices: 36000252--36000276 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36000242 ATTTGATTGA
36000252 TATTTAG
1 TATTTAG
36000259 TATTTAG
1 TATTTAG
36000266 TATTTAG
1 TATTTAG
36000273 TATT
1 TATT
36000277 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:36000951 original size:18 final size:18
Alignment explanation
Indices: 36000925--36000959 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36000915 AGGTGCGTTT
*
36000925 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
36000943 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
36000960 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:36001465 original size:25 final size:25
Alignment explanation
Indices: 36001436--36001503 Score: 136
Period size: 25 Copynumber: 2.7 Consensus size: 25
36001426 TATTTTGATA
36001436 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
36001461 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
36001486 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
36001504 ACCCTAACCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:36001575 original size:29 final size:29
Alignment explanation
Indices: 36001538--36002747 Score: 1586
Period size: 29 Copynumber: 43.9 Consensus size: 29
36001528 CCCTAAACCC
*
36001538 TTAACTTAAAAACCCTAACCTTAACCTAAT
1 TTAA-TTAAAAACCCTAACCCTAACCTAAT
*
36001568 TTAGTTAAAAA-CC--A---TAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001591 TTAATTAAAAACCCTAAACCCT----T-A-
1 TTAATTAAAAACCCT-AACCCTAACCTAAT
* *
36001615 --ACTTAAAAACCCTAACCTTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
*
36001642 TTAGTTAAAAA-CC--A---TAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001665 TTAATTAAAAACCCTAAACCCT----T-A-
1 TTAATTAAAAACCCT-AACCCTAACCTAAT
*
36001689 --ACTTAAAAACCCTAAC------CTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001710 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
**
36001739 TTAATTAAAAACATTAA-CC---CC----
1 TTAATTAAAAACCCTAACCCTAACCTAAT
* *
36001760 TTAACTTAAAAACCCTAACCTTAACCTAAA
1 TTAA-TTAAAAACCCTAACCCTAACCTAAT
36001790 TTAATT--AAA----AACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001813 TTAATTAAAAACCCTAA-CC---CC----
1 TTAATTAAAAACCCTAACCCTAACCTAAT
* *
36001834 TTAACTTAAAAACCCTAACCTTAACCTAAA
1 TTAA-TTAAAAACCCTAACCCTAACCTAAT
36001864 TTAATT--AAA----AACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001887 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001916 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001945 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36001974 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002003 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002032 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002061 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002090 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002119 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002148 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002177 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002206 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002235 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002264 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002293 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002322 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002351 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002380 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002409 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002438 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
*
36002467 TTAATTAAAAACCCTAACCCTAACCTCTAAACCC
1 TTAATTAAAAACCCTAACCCTAA-C-CT-AA--T
36002501 TTAACTT--AAA----AACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCCTAACCTAAT
*
36002525 TTAATTAAAAACCCTAACCCTAACCTAAACC
1 TTAATTAAAAACCCTAACCCTAACCT-AA-T
*
36002556 TAAATTAATTAAA----AACCCTAACCTAAT
1 TTAATTAA--AAACCCTAACCCTAACCTAAT
36002583 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
* *
36002612 TTAATTAAAAACCCTAACCTTAACCTAAA
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002641 TTAATT-AAAA----AA-CCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002664 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002693 TTAATTAAAAACCCTAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAAT
36002722 TTAATTAAAAACCCTAACCCTAACCT
1 TTAATTAAAAACCCTAACCCTAACCT
36002748 CTAAACCCTT
Statistics
Matches: 1063, Mismatches: 28, Indels: 179
0.84 0.02 0.14
Matches are distributed among these distances:
19 1 0.00
20 1 0.00
21 16 0.02
22 48 0.05
23 108 0.10
24 14 0.01
25 19 0.02
26 11 0.01
27 17 0.02
28 17 0.02
29 772 0.73
30 16 0.02
31 9 0.01
32 2 0.00
33 6 0.01
34 4 0.00
35 2 0.00
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
TTAATTAAAAACCCTAACCCTAACCTAAT
Found at i:36002741 original size:35 final size:35
Alignment explanation
Indices: 36002673--36002775 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 35
36002663 TTTAATTAAA
36002673 AACCCTAACCCTAACCTAATTTAATT--AAA----
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCT
36002702 AACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCT
*
36002737 AACCCTAACCTCTAAACC---CTTAACTTAAAAACCCT
1 AACCCTAACC-CT-AACCTAATTTAA-TTAAAAACCCT
36002772 AACC
1 AACC
36002776 TAATTTAATT
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
29 26 0.41
31 3 0.05
34 4 0.06
35 25 0.39
36 2 0.03
37 4 0.06
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (35 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCT
Found at i:36002798 original size:29 final size:29
Alignment explanation
Indices: 36001696--36002747 Score: 1589
Period size: 29 Copynumber: 37.4 Consensus size: 29
36001686 TTAACTTAAA
36001696 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
**
36001725 AACCCTAACCTAATTTAATTAAAAACATT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001754 AA-CC---CC----TTAACTTAAAAACCCT
1 AACCCTAACCTAATTTAA-TTAAAAACCCT
* *
36001776 AACCTTAACCTAAATTAATT--AAA----
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001799 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001828 AA-CC---CC----TTAACTTAAAAACCCT
1 AACCCTAACCTAATTTAA-TTAAAAACCCT
* *
36001850 AACCTTAACCTAAATTAATT--AAA----
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001873 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001902 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001931 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001960 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36001989 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002018 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002047 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002076 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002105 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002134 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002163 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002192 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002221 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002250 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002279 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002308 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002337 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002366 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002395 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002424 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002453 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
*
36002482 AACCCTAACCTCTAAACCCTTAACTT--AAA----
1 AACCCTAA-C-CT-AA--TTTAA-TTAAAAACCCT
36002511 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
* *
36002540 AACCCTAACCTAAACCTAAATTAATTAAA----
1 AACCCTAACCT-AA-TTTAATTAA--AAACCCT
36002569 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002598 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
* *
36002627 AACCTTAACCTAAATTAATT-AAAA----
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002651 AA-CCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002679 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002708 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
36002737 AACCCTAACCT
1 AACCCTAACCT
36002748 CTAAACCCTT
Statistics
Matches: 947, Mismatches: 20, Indels: 112
0.88 0.02 0.10
Matches are distributed among these distances:
21 8 0.01
22 24 0.03
23 55 0.06
24 10 0.01
25 16 0.02
26 6 0.01
27 15 0.02
28 13 0.01
29 766 0.81
30 11 0.01
31 9 0.01
32 2 0.00
33 6 0.01
34 4 0.00
35 2 0.00
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.27
Consensus pattern (29 bp):
AACCCTAACCTAATTTAATTAAAAACCCT
Found at i:36006892 original size:19 final size:19
Alignment explanation
Indices: 36006864--36006900 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36006854 TTTTTTTAAT
* *
36006864 AATTTTTTATATAATTTTA
1 AATTTATTATAAAATTTTA
36006883 AATTTATTATAAAATTTT
1 AATTTATTATAAAATTTT
36006901 GAAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
AATTTATTATAAAATTTTA
Found at i:36016254 original size:14 final size:16
Alignment explanation
Indices: 36016235--36016266 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36016225 CTTCATTTTT
36016235 TTTCTC-CTT-TCTCC
1 TTTCTCTCTTCTCTCC
36016249 TTTCTCTCTTCTCTCC
1 TTTCTCTCTTCTCTCC
36016265 TT
1 TT
36016267 CATCCTGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTCTCTCTTCTCTCC
Found at i:36016521 original size:8 final size:8
Alignment explanation
Indices: 36016508--36016533 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
36016498 GTGTATGAGT
36016508 ATGCATGA
1 ATGCATGA
36016516 ATGCATGA
1 ATGCATGA
36016524 ATGCATGA
1 ATGCATGA
36016532 AT
1 AT
36016534 TTTCCATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (8 bp):
ATGCATGA
Found at i:36029640 original size:21 final size:21
Alignment explanation
Indices: 36029616--36029662 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
36029606 CGATTAGTGT
* *
36029616 ACACAGATGTGTGAAGTAGTC
1 ACACAGACGTGTGAAGTAGCC
* *
36029637 ACACGGGCGTGTGAAGTAGCC
1 ACACAGACGTGTGAAGTAGCC
36029658 ACACA
1 ACACA
36029663 ACCATGTCCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.21, G:0.30, T:0.17
Consensus pattern (21 bp):
ACACAGACGTGTGAAGTAGCC
Found at i:36030377 original size:24 final size:24
Alignment explanation
Indices: 36030345--36030393 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
36030335 ATTATGCCTC
36030345 CTATGATACTTCCACCACCTTAAG
1 CTATGATACTTCCACCACCTTAAG
36030369 CTATGATACTTCCACCACCTTAAG
1 CTATGATACTTCCACCACCTTAAG
36030393 C
1 C
36030394 AATTGAGACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.08, T:0.29
Consensus pattern (24 bp):
CTATGATACTTCCACCACCTTAAG
Found at i:36033138 original size:27 final size:27
Alignment explanation
Indices: 36033099--36033218 Score: 95
Period size: 27 Copynumber: 4.4 Consensus size: 27
36033089 ATTTTATCTC
*
36033099 ATGTTTAACGTCCTAACGAACTACCCT
1 ATGTTTAATGTCCTAACGAACTACCCT
* * * *
36033126 GTGTTTGATGTCCCAACGAACTACTCT
1 ATGTTTAATGTCCTAACGAACTACCCT
** *
36033153 ATGTTTAATGTCCTGGCAGAA-TACCCC
1 ATGTTTAATGTCCTAAC-GAACTACCCT
*
36033180 GTGTTTAATGT-C--ACGGCAGACTACCCT
1 ATGTTTAATGTCCTAAC-G-A-ACTACCCT
36033207 ATGTTTAATGTC
1 ATGTTTAATGTC
36033219 TCGGTGGACT
Statistics
Matches: 71, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
24 2 0.03
25 1 0.01
26 2 0.03
27 63 0.89
28 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (27 bp):
ATGTTTAATGTCCTAACGAACTACCCT
Found at i:36033329 original size:31 final size:32
Alignment explanation
Indices: 36033278--36033348 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
36033268 ACCTCTTGGA
* * *
36033278 GGTGTCACTTCGAAGGACCTTACCG-CTGTCGC
1 GGTGTCGCTTCGAAAGACCTTACCGTC-ATCGC
*
36033310 GGTGTCGCTTC-AAAGACCTTACTGTCATCGC
1 GGTGTCGCTTCGAAAGACCTTACCGTCATCGC
36033341 GGTGTCGC
1 GGTGTCGC
36033349 CCCATAGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 23 0.68
32 11 0.32
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.27
Consensus pattern (32 bp):
GGTGTCGCTTCGAAAGACCTTACCGTCATCGC
Found at i:36033489 original size:19 final size:18
Alignment explanation
Indices: 36033443--36033490 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
36033433 GATAGAATTT
*
36033443 TTGTCATAAAATAATTAAT
1 TTGT-ATAAAATAATTAAA
*
36033462 TTTTATAAAATAATTAAA
1 TTGTATAAAATAATTAAA
36033480 TTGTATTAAAA
1 TTGTA-TAAAA
36033491 ATTTAAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (18 bp):
TTGTATAAAATAATTAAA
Found at i:36035098 original size:5 final size:5
Alignment explanation
Indices: 36035088--36035120 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
36035078 GCATTAGAAC
36035088 TTTAT TTTAT TTTAT TTTAT TTTACT TTT-T TTT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTT
36035121 TCTAGTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 19 0.70
6 4 0.15
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:36038146 original size:11 final size:11
Alignment explanation
Indices: 36038096--36038148 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
36038086 ATAAAAGTTC
36038096 TAAAATA-AAT
1 TAAAATAGAAT
36038106 TAAATATATGAAT
1 TAAA-ATA-GAAT
*
36038119 TCAAAATAGACT
1 T-AAAATAGAAT
*
36038131 CAAAATAGAAT
1 TAAAATAGAAT
36038142 TAAAATA
1 TAAAATA
36038149 ACCATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (11 bp):
TAAAATAGAAT
Found at i:36039302 original size:25 final size:23
Alignment explanation
Indices: 36039266--36039319 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
36039256 GTTATCCGTT
*
36039266 TTTGTTTTTTTC-CGTGGGTATTG
1 TTTGTTTTTTTCTCGTGAGT-TTG
*
36039289 TTTGTTTCTGTTTCTCTTGAGTTTG
1 TTTGTTT-T-TTTCTCGTGAGTTTG
36039314 TTTGTT
1 TTTGTT
36039320 GCAGGTGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 1 0.04
25 13 0.50
26 5 0.19
ACGTcount: A:0.04, C:0.09, G:0.22, T:0.65
Consensus pattern (23 bp):
TTTGTTTTTTTCTCGTGAGTTTG
Found at i:36039909 original size:50 final size:50
Alignment explanation
Indices: 36039855--36040066 Score: 203
Period size: 50 Copynumber: 4.2 Consensus size: 50
36039845 TTCGCCATTA
* * * *
36039855 TGGCTTTAATCTCTTT-AACTGCAATGTCGGGGAAGCATGATTCGCTGTTG
1 TGGCTTTAATCT-TTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATG
*
36039905 TGGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGATG
1 TGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATG
* *** * * * * * *** *
36039955 TGGCTTTAATCTGTTCCGCTG-GATCGCCTGGGAGGTAAGATTCGTTGTTG
1 TGGCTTTAATCTTTTGAACTGCAAT-GTCGGGGAAGCAAGATTCACCGATG
* * *
36040005 TAGCTTTAATCTTTTGAATTGCAATGTTGGGGAAGCAAGATTCACCGATG
1 TGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATG
36040055 TGGCTTTAATCT
1 TGGCTTTAATCT
36040067 GTTCCACTGC
Statistics
Matches: 123, Mismatches: 36, Indels: 6
0.75 0.22 0.04
Matches are distributed among these distances:
49 5 0.04
50 116 0.94
51 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (50 bp):
TGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATG
Found at i:36040014 original size:100 final size:100
Alignment explanation
Indices: 36039893--36040099 Score: 342
Period size: 100 Copynumber: 2.1 Consensus size: 100
36039883 GGGGAAGCAT
* *
36039893 GATTCGCTGTTGTGGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGG
1 GATTCGTTGTTGTAGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGG
* * *
36039958 CTTTAATCTGTTCCGCTGGATCGCCTGGGAGGTAA
66 CTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAA
* * *
36039993 GATTCGTTGTTGTAGCTTTAATCTTTTGAATTGCAATGTTGGGGAAGCAAGATTCACCGATGTGG
1 GATTCGTTGTTGTAGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGG
36040058 CTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAA
66 CTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAA
36040093 GATTCGT
1 GATTCGT
36040100 AATTCTTCGG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 99 1.00
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (100 bp):
GATTCGTTGTTGTAGCTTTAATCTTTTGAACTACAATGTCGGGGAAGCAAGATTCACCGATGTGG
CTTTAATCTGTTCCACTGCACCGCCTGGGAGGTAA
Found at i:36040095 original size:50 final size:50
Alignment explanation
Indices: 36039941--36040097 Score: 145
Period size: 50 Copynumber: 3.1 Consensus size: 50
36039931 TCGGGGAAGC
* * *
36039941 AAGATTCACCGATGTGGCTTTAATCTGTTCCGCTGGATCGCCTGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCTGGGAGGT
*** * * * ** * * * * *
36039991 AAGATTCGTTGTTGTAGCTTTAATCTTTTGAATTGCAATG-TTGGGGAAGC
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCT-GGGAGGT
*
36040041 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAGGT
1 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCTGGGAGGT
36040091 AAGATTC
1 AAGATTC
36040098 GTAATTCTTC
Statistics
Matches: 75, Mismatches: 30, Indels: 4
0.69 0.28 0.04
Matches are distributed among these distances:
49 1 0.01
50 73 0.97
51 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (50 bp):
AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCTGGGAGGT
Found at i:36040253 original size:44 final size:44
Alignment explanation
Indices: 36040193--36040599 Score: 238
Period size: 44 Copynumber: 8.8 Consensus size: 44
36040183 CCTTTATTTT
* * *
36040193 AATCCGCTCCATTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
36040237 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTA-TGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTACTAGCTTC
* * ** * *
36040281 AATCTGATGCGATGTACTCTACTATAA-CTTCAGAGAGATAAGATCTTTTA-TTTT
1 AATC---TGC----T-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTC
* *
36040335 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
36040379 AATTTGCTTCGCTGTAATCTCAGGGAGATAAGATTTA-TGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TTACTAGCTTC
* * * *
36040423 AATCTGATGCGATGTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATC---TGC----T-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
36040477 AAT-TCGCTCCACTGTAATCTCAAGGAGATAGGATTACGAGCTTC
1 AATCT-GCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
36040521 AATCTGCTCCGCTATAATCTCAGGGAGATGAGATTTCTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
36040565 AATCTGCTCCACTGTAA-CATCAGGGAGATAAGATT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATT
36040600 CACCATTTTC
Statistics
Matches: 276, Mismatches: 50, Indels: 74
0.69 0.12 0.19
Matches are distributed among these distances:
42 1 0.00
43 5 0.02
44 183 0.66
45 11 0.04
46 2 0.01
47 8 0.03
50 1 0.00
51 6 0.02
52 1 0.00
53 6 0.02
54 49 0.18
55 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:36040398 original size:142 final size:142
Alignment explanation
Indices: 36040153--36040570 Score: 719
Period size: 142 Copynumber: 2.9 Consensus size: 142
36040143 TGATCCAATC
* *
36040153 TACTCTACTATAACTTCATAGAGATAAGATCCTTTATTTTAATCCGCTCCATTGTAATCTCAGGG
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
36040218 AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
66 AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
36040283 TCTGATGCGATG
131 TCTGATGCGATG
*
36040295 TACTCTACTATAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
* *
36040360 AGATAGGATTACTAGCTTCAATTTGCTTCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
66 AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
36040425 TCTGATGCGATG
131 TCTGATGCGATG
* * *
36040437 TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAAGG
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
* * * * *
36040502 AGATAGGATTACGAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATGAGATTTCTAGCTTCAA
66 AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
36040567 TCTG
131 TCTG
36040571 CTCCACTGTA
Statistics
Matches: 260, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 260 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (142 bp):
TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGG
AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTATGGCTTCAA
TCTGATGCGATG
Found at i:36042925 original size:15 final size:14
Alignment explanation
Indices: 36042902--36042935 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
36042892 TTTTCTTTCA
*
36042902 TTTTTATTTTTATT
1 TTTTTATTTTGATT
36042916 TTTTTGATTTTGATT
1 TTTTT-ATTTTGATT
36042931 TTTTT
1 TTTTT
36042936 TGAAAGGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTGATT
Found at i:36042931 original size:21 final size:22
Alignment explanation
Indices: 36042892--36042933 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
36042882 TCTTCTTTCT
*
36042892 TTTTCTTTCATTTTTATTTTTA
1 TTTTCTTTCATTTTGATTTTTA
*
36042914 TTTT-TTTGATTTTGATTTTT
1 TTTTCTTTCATTTTGATTTTT
36042934 TTTGAAAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (22 bp):
TTTTCTTTCATTTTGATTTTTA
Found at i:36048455 original size:25 final size:24
Alignment explanation
Indices: 36048419--36048472 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
36048409 GGTATCCGTT
*
36048419 TTTG-TTTTTTTC-CGTGGGTATTG
1 TTTGTTTTTTTTCTCGTGAGT-TTG
*
36048442 TTTGTTTTTGTTTCTCTTGAGTTTG
1 TTTGTTTTT-TTTCTCGTGAGTTTG
36048467 TTTGTT
1 TTTGTT
36048473 GCAGGTGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 4 0.15
25 13 0.50
26 5 0.19
ACGTcount: A:0.04, C:0.07, G:0.22, T:0.67
Consensus pattern (24 bp):
TTTGTTTTTTTTCTCGTGAGTTTG
Found at i:36052750 original size:16 final size:18
Alignment explanation
Indices: 36052724--36052756 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36052714 TTAAATTAAC
36052724 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
36052741 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
36052757 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:36055617 original size:48 final size:48
Alignment explanation
Indices: 36055546--36055829 Score: 505
Period size: 48 Copynumber: 5.9 Consensus size: 48
36055536 AAGTCTCATA
*
36055546 CCGATGCCATATCCCAAATATGGTCTTATACGGGATCTCAAATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
*
36055594 CCGATGCCATATCCCATATATGGTCTTATACGGGATCTCAAATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
*
36055642 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCACAAATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
**
36055690 CCGATGCCATATCCCAGATATGGTCTTATACAAGATCTCAAATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
*
36055738 CCGATGCCATATCCCATATATGGTCTTATACGGGATCTCAAATCGATG
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
*
36055786 CCGATGCCATATCCCAGATATGGCCTTATACGGGATCTCAAATC
1 CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATC
36055830 AATTCAGTAA
Statistics
Matches: 225, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATATCCCAGATATGGTCTTATACGGGATCTCAAATCGATG
Found at i:36060387 original size:37 final size:37
Alignment explanation
Indices: 36060324--36060412 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
36060314 TATTTACTAA
* * *
36060324 ATTGAGCATCATTCAGTATAATGGTATGAATTGCTCAG
1 ATTGAGCTTCATTCAGTACAACGGTATGAATTGCT-AG
* * *
36060362 -TTGTGCTTCATTCAGTACAACGGTATGATTTGCTTG
1 ATTGAGCTTCATTCAGTACAACGGTATGAATTGCTAG
36060398 ATTGAGCTTCATTCA
1 ATTGAGCTTCATTCA
36060413 ATATAGCAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (37 bp):
ATTGAGCTTCATTCAGTACAACGGTATGAATTGCTAG
Found at i:36074055 original size:3 final size:3
Alignment explanation
Indices: 36074047--36074086 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
36074037 TTTGGCCTTC
36074047 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36074087 CTAGATTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:36078724 original size:16 final size:15
Alignment explanation
Indices: 36078703--36078737 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
36078693 GGATGTTATG
*
36078703 TTTTTCTTTTCTTTT
1 TTTTTCCTTTCTTTT
36078718 CTTTTTCCTTTCTTTT
1 -TTTTTCCTTTCTTTT
36078734 TTTT
1 TTTT
36078738 ATCTCTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCCTTTCTTTT
Found at i:36081763 original size:23 final size:23
Alignment explanation
Indices: 36081736--36081788 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
36081726 AGTGTTATTG
36081736 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
36081759 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
36081782 ATCAGTG
1 ATCAGTG
36081789 TGGCACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:36091674 original size:75 final size:74
Alignment explanation
Indices: 36091544--36091825 Score: 228
Period size: 75 Copynumber: 3.8 Consensus size: 74
36091534 CTATATAACA
* ** * * * * ** * *
36091544 AGTAGATATCGCTTGTTTGAGCCCATTCAGTGTAATCAGTGGATATCGCTTGTTTGAGCAACTTT
1 AGTAGATATTGCTCATTTGAGCACGTTCAATATAATCAGTAAATATTGCTCGTTTGAGC-ACTTT
36091609 CAGTATAATT
65 CAGTATAATT
* * * * * *
36091619 AGTAGACATTGCTCTTTTGAGCACGTTCAATATATTTAGTAAATATTGGTCGTTTGAGCCCATTT
1 AGTAGATATTGCTCATTTGAGCACGTTCAATATAATCAGTAAATATTGCTCGTTTGAGCAC-TTT
*
36091684 -AGTATAATC
65 CAGTATAATT
* * * * *
36091693 AGTAGATATCGCTCATTTGAGCAACTTTCAATATAATCAGTAGATATTGCTCTTTTGAGCACGTT
1 AGTAGATATTGCTCATTTGAGC-ACGTTCAATATAATCAGTAAATATTGCTCGTTTGAGCACTTT
*
36091758 CAGTAGT-TTT
65 CAGTA-TAATT
** * * * * *
36091768 AGTAGATATTGCTCATTTGAGCATATTCAGTATAAT-AGTAGACATTACTCATTTGAGC
1 AGTAGATATTGCTCATTTGAGCACGTTCAATATAATCAGTAAATATTGCTCGTTTGAGC
36091826 CATTTAGTAT
Statistics
Matches: 166, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
73 19 0.11
74 41 0.25
75 105 0.63
76 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (74 bp):
AGTAGATATTGCTCATTTGAGCACGTTCAATATAATCAGTAAATATTGCTCGTTTGAGCACTTTC
AGTATAATT
Found at i:36091675 original size:37 final size:37
Alignment explanation
Indices: 36091544--36091825 Score: 226
Period size: 37 Copynumber: 7.6 Consensus size: 37
36091534 CTATATAACA
* ** * * * *
36091544 AGTAGATATCGCTTGTTTGAGCCCATTCAGTGTAATC
1 AGTAGATATTGCTCATTTGAGCACGTTCAGTATAATT
* * ** *
36091581 AGTGGATATCGCTTGTTTGAGCAACTTTCAGTATAATT
1 AGTAGATATTGCTCATTTGAGC-ACGTTCAGTATAATT
* * * *
36091619 AGTAGACATTGCTCTTTTGAGCACGTTCAATATATTT
1 AGTAGATATTGCTCATTTGAGCACGTTCAGTATAATT
* * * * * * *
36091656 AGTAAATATTGGTCGTTTGAGCCCATTTAGTATAATC
1 AGTAGATATTGCTCATTTGAGCACGTTCAGTATAATT
* * * *
36091693 AGTAGATATCGCTCATTTGAGCAACTTTCAATATAATC
1 AGTAGATATTGCTCATTTGAGC-ACGTTCAGTATAATT
* *
36091731 AGTAGATATTGCTCTTTTGAGCACGTTCAGTAGT-TTT
1 AGTAGATATTGCTCATTTGAGCACGTTCAGTA-TAATT
**
36091768 AGTAGATATTGCTCATTTGAGCATATTCAGTATAA-T
1 AGTAGATATTGCTCATTTGAGCACGTTCAGTATAATT
* *
36091804 AGTAGACATTACTCATTTGAGC
1 AGTAGATATTGCTCATTTGAGC
36091826 CATTTAGTAT
Statistics
Matches: 198, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
36 22 0.11
37 116 0.59
38 60 0.30
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (37 bp):
AGTAGATATTGCTCATTTGAGCACGTTCAGTATAATT
Found at i:36091735 original size:112 final size:112
Alignment explanation
Indices: 36091544--36091825 Score: 361
Period size: 112 Copynumber: 2.5 Consensus size: 112
36091534 CTATATAACA
* * * * * **
36091544 AGTAGATATCGCTTGTTTGAGCCCATTCAGTGTAATCAGTGGATATCGCTTGTTTGAGCAACTTT
1 AGTAAATATTGCTCGTTTGAGCCCATTCAGTATAATCAGTAGATATCGCTCATTTGAGCAACTTT
* *
36091609 CAGTATAATTAGTAGACATTGCTCTTTTGAGCACGTTCAATA-TATTT
66 CAATATAATCAGTAGACATTGCTCTTTTGAGCACGTTCAATAGT-TTT
* *
36091656 AGTAAATATTGGTCGTTTGAGCCCATTTAGTATAATCAGTAGATATCGCTCATTTGAGCAACTTT
1 AGTAAATATTGCTCGTTTGAGCCCATTCAGTATAATCAGTAGATATCGCTCATTTGAGCAACTTT
* *
36091721 CAATATAATCAGTAGATATTGCTCTTTTGAGCACGTTCAGTAGTTTT
66 CAATATAATCAGTAGACATTGCTCTTTTGAGCACGTTCAATAGTTTT
* * ** * **
36091768 AGTAGATATTGCTCATTTGAGCATATTCAGTATAAT-AGTAGACATTACTCATTTGAGC
1 AGTAAATATTGCTCGTTTGAGCCCATTCAGTATAATCAGTAGATATCGCTCATTTGAGC
36091826 CATTTAGTAT
Statistics
Matches: 147, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
111 19 0.13
112 127 0.86
113 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (112 bp):
AGTAAATATTGCTCGTTTGAGCCCATTCAGTATAATCAGTAGATATCGCTCATTTGAGCAACTTT
CAATATAATCAGTAGACATTGCTCTTTTGAGCACGTTCAATAGTTTT
Found at i:36092493 original size:23 final size:24
Alignment explanation
Indices: 36092414--36092507 Score: 86
Period size: 23 Copynumber: 4.0 Consensus size: 24
36092404 AAAAATATAT
*
36092414 ATTGTTGTATATATGCTGTCCAAT
1 ATTGTTGTATATATGCTGTCCAAA
* * * * *
36092438 TTTGGTGTAAAAATACTG-CTC-AA
1 ATTGTTGTATATATGCTGTC-CAAA
36092461 ATTGTTGTATATATGCTG-CCAAA
1 ATTGTTGTATATATGCTGTCCAAA
* *
36092484 ATTGTTGTATTTATGATGTCCAAA
1 ATTGTTGTATATATGCTGTCCAAA
36092508 TTTTGGTGTA
Statistics
Matches: 54, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
22 1 0.02
23 34 0.63
24 19 0.35
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (24 bp):
ATTGTTGTATATATGCTGTCCAAA
Found at i:36092557 original size:71 final size:70
Alignment explanation
Indices: 36092414--36092565 Score: 193
Period size: 71 Copynumber: 2.2 Consensus size: 70
36092404 AAAAATATAT
* * *
36092414 ATTGTTGTATATATGCTGTCCAATTTTGGTGTAAAAATACTGCTCAAATTGTTGTATATATGCTG
1 ATTGTTGTATATATGATGTCCAATTTTGGTGTAAAAATACTGCTCAAATTGTGGTATATATGATG
36092479 CCAAA
66 CCAAA
* *
36092484 ATTGTTGTATTTATGATGTCCAAATTTTGGTGTAAAAATACTG-TCTAATT-TGGTATATAAATG
1 ATTGTTGTATATATGATGTCC-AATTTTGGTGTAAAAATACTGCTCAAATTGTGGTATAT--ATG
36092547 ATGTCC-AA
63 ATG-CCAAA
*
36092555 ATTGATGTATA
1 ATTGTTGTATA
36092566 AGAGCTATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
69 7 0.10
70 25 0.35
71 37 0.52
72 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (70 bp):
ATTGTTGTATATATGATGTCCAATTTTGGTGTAAAAATACTGCTCAAATTGTGGTATATATGATG
CCAAA
Found at i:36092565 original size:23 final size:23
Alignment explanation
Indices: 36092414--36092566 Score: 71
Period size: 23 Copynumber: 6.5 Consensus size: 23
36092404 AAAAATATAT
* * *
36092414 ATTGTTGTATATATGCTGTCCAA
1 ATTGGTGTATAAATGATGTCCAA
* *
36092437 TTTTGGTGTAAAAAT-ACTG-CTCAA
1 -ATTGGTGTATAAATGA-TGTC-CAA
* * *
36092461 ATTGTTGTATATATGCTG-CCAAA
1 ATTGGTGTATAAATGATGTCC-AA
* **
36092484 ATTGTTGTATTTATGATGTCCAA
1 ATTGGTGTATAAATGATGTCCAA
* *
36092507 ATTTTGGTGTAAAAAT-ACTGTCTAA
1 A--TTGGTGTATAAATGA-TGTCCAA
* *
36092532 TTTGGTATATAAATGATGTCCAA
1 ATTGGTGTATAAATGATGTCCAA
*
36092555 ATTGATGTATAA
1 ATTGGTGTATAA
36092567 GAGCTATCCA
Statistics
Matches: 96, Mismatches: 24, Indels: 19
0.69 0.17 0.14
Matches are distributed among these distances:
22 1 0.01
23 61 0.64
24 19 0.20
25 15 0.16
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (23 bp):
ATTGGTGTATAAATGATGTCCAA
Found at i:36098964 original size:43 final size:42
Alignment explanation
Indices: 36098907--36099019 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 42
36098897 GTGTTATCGC
*
36098907 GTAAGACCACGTCTGGGACATTGGCATCGACT-TATGTTTACAT
1 GTAAGACCACGTCTGGGACATTGGCATCGA-TATA-GATTACAT
*
36098950 GTAAGACC-CTGTCTGGGACAGTGGCATCGATATGAGATTACAT
1 GTAAGACCAC-GTCTGGGACATTGGCATCGATAT-AGATTACAT
* *
36098993 GTAAGACCACGTATGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACATTGGCAT
36099020 TGTACGAGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 57 0.93
44 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATATAGATTACAT
Found at i:36100065 original size:47 final size:48
Alignment explanation
Indices: 36100011--36100289 Score: 165
Period size: 47 Copynumber: 5.9 Consensus size: 48
36100001 ACCGAATAGG
* * *
36100011 TGATGCTTCAATGTTG-CCCAATTTGTTGCATATATGCTGTCCAATTT
1 TGATGCTTAAATGCTGTCCAAATTTGTTGCATATATGCTGTCCAATTT
*
36100058 TGATGCTTAAATGCTGTCCAAATTTGTTGTATATATGCTGTCCAATTT
1 TGATGCTTAAATGCTGTCCAAATTTGTTGCATATATGCTGTCCAATTT
* * * *
36100106 TGGTG-TAAAAATGCTG-CTCAAA-TTGTTGTATATATGCTGCCCAAATTGT
1 TGATGCT-TAAATGCTGTC-CAAATTTGTTGCATATATGCTGTCC-AATT-T
* * * * * *
36100155 TGAAT--TT--ATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGT
1 TG-ATGCTTAAATGCTGTCCAAATTTGTTGCATATATGCTG-TCCAATT-T
* * * * *
36100202 TG-T--ATATATGCTGCCCAAA-TTGTTGAATTTATGCTGTCCAATTT
1 TGATGCTTAAATGCTGTCCAAATTTGTTGCATATATGCTGTCCAATTT
* * * *
36100246 TGGTG-TAAAAATGCTG-CTCAAA-TTGTTGTATATATGCTGCCCAA
1 TGATGCT-TAAATGCTGTC-CAAATTTGTTGCATATATGCTGTCCAA
36100290 ATTGTTGAAT
Statistics
Matches: 187, Mismatches: 30, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
44 3 0.02
45 9 0.05
46 22 0.12
47 98 0.52
48 50 0.27
49 4 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (48 bp):
TGATGCTTAAATGCTGTCCAAATTTGTTGCATATATGCTGTCCAATTT
Found at i:36100071 original size:24 final size:24
Alignment explanation
Indices: 36100011--36100107 Score: 90
Period size: 24 Copynumber: 4.1 Consensus size: 24
36100001 ACCGAATAGG
* * *
36100011 TGATGCTTCAATGTTGCCCAA-TT
1 TGATGCTTAAATGCTGTCCAATTT
* * *
36100034 TGTTGCATATATGCTGTCCAATTT
1 TGATGCTTAAATGCTGTCCAATTT
*
36100058 TGATGCTTAAATGCTGTCCAAATT
1 TGATGCTTAAATGCTGTCCAATTT
* *
36100082 TGTTG-TATATATGCTGTCCAATTT
1 TGATGCT-TAAATGCTGTCCAATTT
36100106 TG
1 TG
36100108 GTGTAAAAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
23 16 0.27
24 43 0.73
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (24 bp):
TGATGCTTAAATGCTGTCCAATTT
Found at i:36100174 original size:70 final size:70
Alignment explanation
Indices: 36100068--36100419 Score: 582
Period size: 70 Copynumber: 5.0 Consensus size: 70
36100058 TGATGCTTAA
* * *
36100068 ATGCTGTCCAAATTTGTTGTATATATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTT
1 ATGCTGCCCAAA-TTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTT
36100133 GTATAT
65 GTATAT
36100139 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
36100204 TATAT
66 TATAT
36100209 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
36100274 TATAT
66 TATAT
36100279 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
36100344 TATAT
66 TATAT
* * * * *
36100349 ATGTTGCCCAAAATTGTTGTATTTATGCTGTCCAAATTTTGATGTGAAAATGCTG-TCTAATT-T
1 ATGCTGCCC-AAATTGTTGAATTTATGCTGTCC-AATTTTGGTGTAAAAATGCTGCTCAAATTGT
*
36100412 GGTATAT
64 TGTATAT
36100419 A
1 A
36100420 AATGTTGTCC
Statistics
Matches: 270, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
70 212 0.79
71 39 0.14
72 19 0.07
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.41
Consensus pattern (70 bp):
ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
TATAT
Found at i:36100377 original size:47 final size:47
Alignment explanation
Indices: 36100068--36100386 Score: 245
Period size: 47 Copynumber: 6.8 Consensus size: 47
36100058 TGATGCTTAA
* * * * * *
36100068 ATGCTGTCCAAATTTGTTGTATATATGCTG-TCCAATTTTGGTGTAAAA
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCT-CAA-ATTGTTGTATAT
* * * *
36100116 ATGCTGCTC-AAATTGTTGTATATATGCTGCCCAAATTGTTGAATTT
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCTCAAATTGTTGTATAT
* ** * * *
36100162 ATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTGTATAT
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCTCAAATTGTTGTATAT
* * * * * *
36100209 ATGCTGCCC-AAATTGTTGAATTTATGCTG-TCCAATTTTGGTGTAAAA
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCT-CAA-ATTGTTGTATAT
* * * *
36100256 ATGCTGCTC-AAATTGTTGTATATATGCTGCCCAAATTGTTGAATTT
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCTCAAATTGTTGTATAT
* ** * * *
36100302 ATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTGTATAT
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCTCAAATTGTTGTATAT
* *
36100349 ATGTTGCCCAAAATTGTTGTATTTATGCTG-TCCAAATT
1 ATGCTGCCCAAAATTGTTGTATATATGCTGCT-CAAATT
36100387 TTGATGTGAA
Statistics
Matches: 204, Mismatches: 60, Indels: 15
0.73 0.22 0.05
Matches are distributed among these distances:
45 1 0.00
46 43 0.21
47 153 0.75
48 7 0.03
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (47 bp):
ATGCTGCCCAAAATTGTTGTATATATGCTGCTCAAATTGTTGTATAT
Found at i:36100422 original size:23 final size:23
Alignment explanation
Indices: 36100373--36100455 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
36100363 TGTTGTATTT
*
36100373 ATGCTGTCCAAATTTTGATGTGA-AA
1 ATGCTGTCCAAA--TTGATAT-ATAA
* * *
36100398 ATGCTGTCTAATTTGGTATATAA
1 ATGCTGTCCAAATTGATATATAA
* *
36100421 ATGTTGTCCAAATTGATGTATAA
1 ATGCTGTCCAAATTGATATATAA
*
36100444 AAGCTGTCCAAA
1 ATGCTGTCCAAA
36100456 CAGAGTAGAT
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
22 1 0.02
23 35 0.76
25 10 0.22
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (23 bp):
ATGCTGTCCAAATTGATATATAA
Found at i:36106948 original size:18 final size:16
Alignment explanation
Indices: 36106914--36106949 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
36106904 TTATATAATA
36106914 TATTTTTAATAACTTT
1 TATTTTTAATAACTTT
36106930 TATTTTATAATATACTTT
1 TATTTT-TAATA-ACTTT
36106948 TA
1 TA
36106950 AAAGCCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTTTAATAACTTT
Found at i:36106966 original size:28 final size:27
Alignment explanation
Indices: 36106901--36106966 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
36106891 GATGAATTAT
* *
36106901 TTTTTATATAATATATTTTTAATAACT
1 TTTTTATATAATATACTTTTAATAACA
*
36106928 TTTATTTTATAATATACTTTTAA-AAGCCA
1 TTT-TTATATAATATACTTTTAATAA--CA
36106957 TTTTTATATA
1 TTTTTATATA
36106967 TTTCATCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
27 5 0.16
28 23 0.72
29 4 0.12
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (27 bp):
TTTTTATATAATATACTTTTAATAACA
Found at i:36107042 original size:28 final size:27
Alignment explanation
Indices: 36106998--36107051 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
36106988 TGATAATATC
36106998 CCTATTTAATA-TTTTTTATGTATACAA
1 CCTATTTAATATTTTTTTAT-TATACAA
36107025 CCTATATTAA-ATTATTTTTATTATACA
1 CCTAT-TTAATATT-TTTTTATTATACA
36107052 TATGTATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 6 0.25
28 11 0.46
29 7 0.29
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (27 bp):
CCTATTTAATATTTTTTTATTATACAA
Found at i:36111132 original size:306 final size:306
Alignment explanation
Indices: 36110579--36111495 Score: 1744
Period size: 306 Copynumber: 3.0 Consensus size: 306
36110569 TCGAAACAAG
*
36110579 TGAACCACTCGGAGAGGTTCGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
1 TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
36110644 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
66 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
36110709 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
131 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
36110774 GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
196 GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
36110839 GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGAA
261 GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGAA
36110885 TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
1 TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
36110950 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
66 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
36111015 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
131 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
36111080 GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
196 GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
*
36111145 GGTGTGTTGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGAA
261 GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGAA
36111191 TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
1 TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
*
36111256 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTCAGTGAAGTCCTCGGGTTCATCCTGAGG
66 TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
* *
36111321 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCACTCCATAAAGTCGCTCAATCATCCTCATAT
131 ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
* * * * *
36111386 GGCTCATGCTCAATAATCCTTGCGGGGACATTTGGCCGACTAGTGTAAGCAAGGAAGACTGCTTC
196 GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
36111451 GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGA
261 GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGA
36111496 GGCCCTAAAC
Statistics
Matches: 600, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
306 600 1.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (306 bp):
TGAACCACTCGGAGAGGTTTGCTAAGGTAGCAGCAGAAGAAGCAGGACGGTGACTTGAAGGTGGA
TGATGAGGTGGATCCTTGTGATAGAAGGGGACATCGTTAGTGAAGTCCTCGGGTTCATCCTGAGG
ATCAAAATGAGATAATTGGTACTGAGGTGGATCCATTACATAAAGTCGCTCAATCATCCTCATAT
GGCTCATGCTCAATAATCCTTGCGAGGACATCTGGCCGGCTAGTGTAAGCAAGGAGGACCGCTTC
GGTGTGTCGAGGAGATCGAAGTGGCATGCAAGTCGAGTCACATGAA
Found at i:36124738 original size:14 final size:14
Alignment explanation
Indices: 36124719--36124752 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
36124709 CCTTAATTAA
36124719 TGATTAAAATGAAT
1 TGATTAAAATGAAT
*
36124733 TGATTAAAATTAAT
1 TGATTAAAATGAAT
*
36124747 TAATTA
1 TGATTA
36124753 TGGATGAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (14 bp):
TGATTAAAATGAAT
Found at i:36125754 original size:7 final size:7
Alignment explanation
Indices: 36125742--36125768 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36125732 TTGGTTGTAA
36125742 TTGGACT
1 TTGGACT
36125749 TTGGACT
1 TTGGACT
36125756 TTGGACT
1 TTGGACT
36125763 TTGGAC
1 TTGGAC
36125769 ATCTATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.41
Consensus pattern (7 bp):
TTGGACT
Found at i:36127630 original size:15 final size:15
Alignment explanation
Indices: 36127610--36127638 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36127600 AAGAAAAATG
36127610 TCATCCGGGTTATTA
1 TCATCCGGGTTATTA
36127625 TCATCCGGGTTATT
1 TCATCCGGGTTATT
36127639 GCATATAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (15 bp):
TCATCCGGGTTATTA
Found at i:36138200 original size:12 final size:13
Alignment explanation
Indices: 36138183--36138211 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
36138173 CTCATACATG
36138183 AATAAATAAA-GC
1 AATAAATAAATGC
36138195 AATAAATAAATGC
1 AATAAATAAATGC
36138208 AATA
1 AATA
36138212 GTTATAGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:36148479 original size:31 final size:31
Alignment explanation
Indices: 36148441--36148505 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
36148431 TTGGAGCTTT
36148441 TGATACAACTCCCGGTGATAGTAAGCAGGAA
1 TGATACAACTCCCGGTGATAGTAAGCAGGAA
36148472 TGATACAACTCCCGGTGATAGTAAGCAGGAA
1 TGATACAACTCCCGGTGATAGTAAGCAGGAA
36148503 TGA
1 TGA
36148506 ATCGCTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.20
Consensus pattern (31 bp):
TGATACAACTCCCGGTGATAGTAAGCAGGAA
Found at i:36149601 original size:13 final size:12
Alignment explanation
Indices: 36149582--36149618 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
36149572 AGACCGTATG
36149582 CAATTTTTTTTT
1 CAATTTTTTTTT
36149594 CAAATTTTTTTTTT
1 C-AA-TTTTTTTTT
36149608 CAATTTTTTTT
1 CAATTTTTTTT
36149619 GAATCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.39
13 4 0.17
14 10 0.43
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:36149604 original size:14 final size:13
Alignment explanation
Indices: 36149585--36149618 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
36149575 CCGTATGCAA
36149585 TTTTTTTTTCAAAT
1 TTTTTTTTTC-AAT
36149599 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
36149612 TTTTTTT
1 TTTTTTT
36149619 GAATCTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:36153775 original size:12 final size:12
Alignment explanation
Indices: 36153758--36153792 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
36153748 TCTTTTGCTA
36153758 TTTTCTCTTTCT
1 TTTTCTCTTTCT
36153770 TTTTCTCATTT-T
1 TTTTCTC-TTTCT
36153782 TTTTCTCTTTC
1 TTTTCTCTTTC
36153793 ACTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.14
12 15 0.71
13 3 0.14
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTCTCTTTCT
Found at i:36153785 original size:24 final size:23
Alignment explanation
Indices: 36153758--36153817 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
36153748 TCTTTTGCTA
*
36153758 TTTTCTCTTTCTTTTTCTCATTTT
1 TTTTCTCTTTCTTTTTAT-ATTTT
*
36153782 TTTTCTCTTTCACTTTTATATTTT
1 TTTTCTCTTTC-TTTTTATATTTT
*
36153806 TTTTCTTTTTCT
1 TTTTCTCTTTCT
36153818 CTCATTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTCTCTTTCTTTTTATATTTT
Found at i:36153790 original size:20 final size:20
Alignment explanation
Indices: 36153746--36153791 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
36153736 GGTTTTCCAC
36153746 TCTCTTTTGCTATTTTCTCT
1 TCTCTTTTGCTATTTTCTCT
* *
36153766 T-TCTTTTTCTCATTTT-TTT
1 TCTCTTTTGCT-ATTTTCTCT
36153785 TCTCTTT
1 TCTCTTT
36153792 CACTTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.72
Consensus pattern (20 bp):
TCTCTTTTGCTATTTTCTCT
Found at i:36156966 original size:30 final size:30
Alignment explanation
Indices: 36156927--36157003 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 30
36156917 CACTCTTTTT
* * *
36156927 TCTTGTTCATATTCTTTTTCTCTCTCAAAC
1 TCTTTTTCATTTTCTTTTTCACTCTCAAAC
*
36156957 TCTTTTTCATTTTCTTTTTCACTCTCAATC
1 TCTTTTTCATTTTCTTTTTCACTCTCAAAC
* *
36156987 TCATTTTCTTTTTCTTT
1 TCTTTTTCATTTTCTTT
36157004 CATTTCTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.13, C:0.25, G:0.01, T:0.61
Consensus pattern (30 bp):
TCTTTTTCATTTTCTTTTTCACTCTCAAAC
Found at i:36157106 original size:15 final size:14
Alignment explanation
Indices: 36157086--36157127 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
36157076 TTTCTTTTGA
36157086 TCTCTTCTTGCTTT
1 TCTCTTCTTGCTTT
36157100 TCGTCTTCTT-CTTT
1 TC-TCTTCTTGCTTT
*
36157114 TCTC-GCTTGCTTT
1 TCTCTTCTTGCTTT
36157127 T
1 T
36157128 TACAAGAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 7 0.28
14 8 0.32
15 7 0.28
ACGTcount: A:0.00, C:0.29, G:0.10, T:0.62
Consensus pattern (14 bp):
TCTCTTCTTGCTTT
Found at i:36162907 original size:40 final size:40
Alignment explanation
Indices: 36162842--36163016 Score: 260
Period size: 40 Copynumber: 4.4 Consensus size: 40
36162832 CGGATGTAAC
* * *
36162842 AACCAGCACGAATGCCTTCGAGACTTAACCCGGTAATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
36162882 AACTCGCACGAATGCCTTCGGGACTTAGCCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
36162922 AACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
36162962 AACCCGCATGAATGCCTTTGGGACTTAACCCGGTTATAAC
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
36163002 AACCCGCACGAATGC
1 AACCCGCACGAATGC
36163017 TGTGCACATA
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:36167111 original size:22 final size:22
Alignment explanation
Indices: 36167083--36167129 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
36167073 CCTTTTTGAA
36167083 CCCTTACCATTTCGTACCAAAT
1 CCCTTACCATTTCGTACCAAAT
*
36167105 CCCTTACCATTTCGTACCAATT
1 CCCTTACCATTTCGTACCAAAT
36167127 CCC
1 CCC
36167130 AAATACCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.40, G:0.04, T:0.32
Consensus pattern (22 bp):
CCCTTACCATTTCGTACCAAAT
Found at i:36173550 original size:24 final size:25
Alignment explanation
Indices: 36173497--36173550 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
36173487 AACAAATTCT
* *
36173497 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
36173522 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
36173545 TTTTTT
1 TTTTTT
36173551 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:36175821 original size:14 final size:14
Alignment explanation
Indices: 36175802--36175828 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36175792 CTAGACCGTA
36175802 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
36175816 TGCAATTTTTTTT
1 TGCAATTTTTTTT
36175829 CCTTCTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (14 bp):
TGCAATTTTTTTTT
Found at i:36177582 original size:215 final size:215
Alignment explanation
Indices: 36177211--36177640 Score: 851
Period size: 215 Copynumber: 2.0 Consensus size: 215
36177201 CCAATTCTCT
36177211 TTGTTCTTACGGAATTGATTTGACTTATCAAGCATAGCTTGTGGCGTCCATCTTTTCTTTGTTGC
1 TTGTTCTTACGGAATTGATTTGACTTATCAAGCATAGCTTGTGGCGTCCATCTTTTCTTTGTTGC
36177276 TGAACTTATCACCTTTGGTGTGGTGTTCAATATACCTTTGGTTCCTATCATAGTTGATAGTGGGT
66 TGAACTTATCACCTTTGGTGTGGTGTTCAATATACCTTTGGTTCCTATCATAGTTGATAGTGGGT
36177341 CAAGGTTCCTTTCCTGTTTCCTTTAACCGAAAAACACCTAAAGACCATTTTGAGATTCGGGTCAA
131 CAAGGTTCCTTTCCTGTTTCCTTTAACCGAAAAACACCTAAAGACCATTTTGAGATTCGGGTCAA
36177406 CAATTCGTTATTGTTGGTTC
196 CAATTCGTTATTGTTGGTTC
36177426 TTGTTCTTACGGAATTGATTTGACTTATCAAGCATAGCTTGTGGCGTCCATCTTTTCTTTGTTGC
1 TTGTTCTTACGGAATTGATTTGACTTATCAAGCATAGCTTGTGGCGTCCATCTTTTCTTTGTTGC
36177491 TGAACTTATCACCTTTGGTGTGGTGTTCAATATACCTTTGGTTCCTATCATAGTTGATAGTGGGT
66 TGAACTTATCACCTTTGGTGTGGTGTTCAATATACCTTTGGTTCCTATCATAGTTGATAGTGGGT
36177556 CAAGGTTCCTTTCCTGTTTCCTTTAACCGAAAAACACCTAAAGACCATTTTGAGATTCGGGTCAA
131 CAAGGTTCCTTTCCTGTTTCCTTTAACCGAAAAACACCTAAAGACCATTTTGAGATTCGGGTCAA
*
36177621 CAATTTGTTATTGTTGGTTC
196 CAATTCGTTATTGTTGGTTC
36177641 ATTTTCGGTC
Statistics
Matches: 214, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 214 1.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (215 bp):
TTGTTCTTACGGAATTGATTTGACTTATCAAGCATAGCTTGTGGCGTCCATCTTTTCTTTGTTGC
TGAACTTATCACCTTTGGTGTGGTGTTCAATATACCTTTGGTTCCTATCATAGTTGATAGTGGGT
CAAGGTTCCTTTCCTGTTTCCTTTAACCGAAAAACACCTAAAGACCATTTTGAGATTCGGGTCAA
CAATTCGTTATTGTTGGTTC
Found at i:36178348 original size:12 final size:12
Alignment explanation
Indices: 36178331--36178381 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 12
36178321 TGTAGTTTCG
36178331 AAAAAAAATTGA
1 AAAAAAAATTGA
*
36178343 AAAAAAAATCGAAAA
1 AAAAAAAATTG---A
36178358 GAAAAAAAATTGA
1 -AAAAAAAATTGA
36178371 AAAAAAAATTG
1 AAAAAAAATTG
36178382 TATACGGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
12 21 0.64
13 1 0.03
15 1 0.03
16 10 0.30
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTGA
Found at i:36178362 original size:16 final size:15
Alignment explanation
Indices: 36178342--36178378 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
36178332 AAAAAAATTG
36178342 AAAAAAAAATCGAAA
1 AAAAAAAAATCGAAA
*
36178357 AGAAAAAAAATTGAAA
1 A-AAAAAAAATCGAAA
36178373 AAAAAA
1 AAAAAA
36178379 TTGTATACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.81, C:0.03, G:0.08, T:0.08
Consensus pattern (15 bp):
AAAAAAAAATCGAAA
Found at i:36179606 original size:24 final size:23
Alignment explanation
Indices: 36179552--36179608 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
36179542 GGATAATTCA
**
36179552 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
36179575 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
36179599 GAAATGGTAT
1 GAAATGGTAT
36179609 GAATAGAATG
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.23, C:0.04, G:0.32, T:0.42
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:36179653 original size:45 final size:45
Alignment explanation
Indices: 36179507--36179653 Score: 122
Period size: 45 Copynumber: 3.2 Consensus size: 45
36179497 GGTTTAAGTC
36179507 GAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCA
1 GAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCA
* * ** * * * * * *
36179552 GAAATGGTAT--TTGGTTTTGGTACG-TTTTGGTATTTGG-GAATTGGTA
1 GAAATGGTATGAATAG-AATGG-AAGAGTTCGGT-TTAGGATAATT--CA
36179598 CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCA
1 -GAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCA
36179644 GAAATGGTAT
1 GAAATGGTAT
36179654 TTGGTTTTGG
Statistics
Matches: 72, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
43 2 0.03
44 12 0.17
45 26 0.36
46 2 0.03
47 16 0.22
48 12 0.17
49 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (45 bp):
GAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCA
Found at i:36179663 original size:92 final size:92
Alignment explanation
Indices: 36179506--36179701 Score: 392
Period size: 92 Copynumber: 2.1 Consensus size: 92
36179496 TGGTTTAAGT
36179506 CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCAGAAATGGTATTTGGTTTTG
1 CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCAGAAATGGTATTTGGTTTTG
36179571 GTACGTTTTGGTATTTGGGAATTGGTA
66 GTACGTTTTGGTATTTGGGAATTGGTA
36179598 CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCAGAAATGGTATTTGGTTTTG
1 CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCAGAAATGGTATTTGGTTTTG
36179663 GTACGTTTTGGTATTTGGGAATTGGTA
66 GTACGTTTTGGTATTTGGGAATTGGTA
36179690 CGAAATGGTATG
1 CGAAATGGTATG
36179702 GAATTGGTAT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 104 1.00
ACGTcount: A:0.29, C:0.05, G:0.31, T:0.36
Consensus pattern (92 bp):
CGAAATGGTATGAATAGAATGGAAGAGTTCGGTTTAGGATAATTCAGAAATGGTATTTGGTTTTG
GTACGTTTTGGTATTTGGGAATTGGTA
Found at i:36179706 original size:21 final size:22
Alignment explanation
Indices: 36179680--36179742 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
36179670 TTGGTATTTG
36179680 GGAATTGGTACGAAATGGTAT-
1 GGAATTGGTACGAAATGGTATA
*
36179701 GGAATTGGTATGAAATGGTATA
1 GGAATTGGTACGAAATGGTATA
* * *
36179723 GTATTTGGTACGAATTGGTA
1 GGAATTGGTACGAAATGGTA
36179743 ATGGTTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 20 0.56
22 16 0.44
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (22 bp):
GGAATTGGTACGAAATGGTATA
Found at i:36181996 original size:52 final size:52
Alignment explanation
Indices: 36181913--36182013 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
36181903 TAAGGAAACG
* *
36181913 TAATGGACAGCAGCTTAAGATCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
*
36181965 TAATAGACAGTAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
36182014 TATGTGCATA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:36191202 original size:14 final size:14
Alignment explanation
Indices: 36191183--36191209 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36191173 CCGAAACTAG
36191183 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
36191197 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
36191210 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Done.