Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 123 of 141
Found at i:36588796 original size:6 final size:6
Alignment explanation
Indices: 36588787--36588820 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
36588777 AGGATTAAGA
36588787 CATGCT CATGCT CATGCT CATGCT CATGCT CATG
1 CATGCT CATGCT CATGCT CATGCT CATGCT CATG
36588821 TTACAGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (6 bp):
CATGCT
Found at i:36589029 original size:72 final size:72
Alignment explanation
Indices: 36588912--36589053 Score: 284
Period size: 72 Copynumber: 2.0 Consensus size: 72
36588902 GTCCAGAAAA
36588912 ACAAAAAAAGAGAAAAAGGGCCTTGGTGTCCCTGGGTTGAACTTGATCCAACTGTTGACTGCCAA
1 ACAAAAAAAGAGAAAAAGGGCCTTGGTGTCCCTGGGTTGAACTTGATCCAACTGTTGACTGCCAA
36588977 AGCCAAG
66 AGCCAAG
36588984 ACAAAAAAAGAGAAAAAGGGCCTTGGTGTCCCTGGGTTGAACTTGATCCAACTGTTGACTGCCAA
1 ACAAAAAAAGAGAAAAAGGGCCTTGGTGTCCCTGGGTTGAACTTGATCCAACTGTTGACTGCCAA
36589049 AGCCA
66 AGCCA
36589054 GCTTTTGGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (72 bp):
ACAAAAAAAGAGAAAAAGGGCCTTGGTGTCCCTGGGTTGAACTTGATCCAACTGTTGACTGCCAA
AGCCAAG
Found at i:36589284 original size:135 final size:134
Alignment explanation
Indices: 36589043--36589285 Score: 432
Period size: 135 Copynumber: 1.8 Consensus size: 134
36589033 AACTGTTGAC
* *
36589043 TGCCAAAGCCAGCTTTTGGATCTGATCAATATATAAAAACTTCGTCTTTCAGTTTTATCAGTCAA
1 TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
*
36589108 TGAGACAAAGATGTCAATTTCACTTTAGTTCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
66 TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
36589173 TTTA
131 TTTA
*
36589177 TGCCAAAGCCAGCTTTTGAATCTGATCATTATATAAAAACTTCCGTCTATCAGTTTTATCAGTCA
1 TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTT-CGTCTATCAGTTTTATCAGTCA
*
36589242 ATGAGACAAAGATGTCAATTTTACTTTAGATCGGGTTTTTGCAT
65 ATGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCAT
36589286 TTTGTTTTAG
Statistics
Matches: 103, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
134 40 0.39
135 63 0.61
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (134 bp):
TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
TTTA
Found at i:36589806 original size:29 final size:30
Alignment explanation
Indices: 36589774--36589830 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
36589764 ATTATTTATT
36589774 TTTAGATA-TTTAATAAATTA-TTAATATAA
1 TTTA-ATATTTTAATAAATTATTTAATATAA
* *
36589803 TTTATTATTTTAGTAAATTATTTAATAT
1 TTTAATATTTTAATAAATTATTTAATAT
36589831 TTTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 15 0.62
30 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (30 bp):
TTTAATATTTTAATAAATTATTTAATATAA
Found at i:36589880 original size:16 final size:15
Alignment explanation
Indices: 36589840--36589880 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
36589830 TTTTAATTTT
36589840 ATTTT-AATAATAAA
1 ATTTTAAATAATAAA
36589854 A-TTTAAA-AATAATA
1 ATTTTAAATAATAA-A
36589868 ATTTTAAATAATA
1 ATTTTAAATAATA
36589881 TTCTTCACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.35
14 5 0.22
15 6 0.26
16 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAAATAATAAA
Found at i:36592236 original size:18 final size:18
Alignment explanation
Indices: 36592213--36592247 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36592203 CAAGAACAGA
36592213 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
* *
36592231 AAGCATGAAGATAGTTT
1 AAGCATCAAAATAGTTT
36592248 GACACGTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:36603523 original size:21 final size:21
Alignment explanation
Indices: 36603478--36603523 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
36603468 TTCTCATTTT
*
36603478 CAACAATTTCCTCTTCTTTAG
1 CAACAATTTCCTCTTCTTTAA
*
36603499 CAACAATTTCCT-TTTTTGTAA
1 CAACAATTTCCTCTTCTT-TAA
36603520 CAAC
1 CAAC
36603524 TTTTGCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.41
Consensus pattern (21 bp):
CAACAATTTCCTCTTCTTTAA
Found at i:36609646 original size:21 final size:21
Alignment explanation
Indices: 36609613--36609676 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
36609603 ATTGGGTGAA
*
36609613 TCAACTTTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
*
36609634 TCAGCTCTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
36609655 TCAACTCTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
36609676 T
1 T
36609677 GACATAATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.17, C:0.27, G:0.16, T:0.41
Consensus pattern (21 bp):
TCAACTCTTACGAGCTTCTGT
Found at i:36630391 original size:44 final size:44
Alignment explanation
Indices: 36630343--36630431 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
36630333 AGGGTAAATC
* * *
36630343 CAACAACCCATGTTTATCTTTTCCTATTTTTAAATTCTTCTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
* *
36630387 CAACAACCCAAGATTATCTTCTCCTATTTTTTAATTCTTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
36630431 C
1 C
36630432 TAGGATAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.02, T:0.51
Consensus pattern (44 bp):
CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
Found at i:36636866 original size:26 final size:26
Alignment explanation
Indices: 36636837--36636887 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
36636827 ATCATGATCT
36636837 TTAGCGGCGTTTGTGGTAAAAGCGCG
1 TTAGCGGCGTTTGTGGTAAAAGCGCG
36636863 TTAGCGGCGTTTGTGGTAAAAGCGC
1 TTAGCGGCGTTTGTGGTAAAAGCGC
36636888 CGCTAAAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.37, T:0.27
Consensus pattern (26 bp):
TTAGCGGCGTTTGTGGTAAAAGCGCG
Found at i:36636909 original size:69 final size:69
Alignment explanation
Indices: 36636802--36636930 Score: 204
Period size: 69 Copynumber: 1.9 Consensus size: 69
36636792 CTTTAGCAGT
* * ** *
36636802 GTTTGTGGAAAAAGCGCCGCTAAAGATCATGATCTTTAGCGGCGTTTGTGGTAAAAGCGCGTTAG
1 GTTTGTGGAAAAAGCGCCGCTAAAGACCATGATATTTAGCAACGTTTGGGGTAAAAGCGCGTTAG
36636867 CGGC
66 CGGC
*
36636871 GTTTGTGGTAAAAGCGCCGCTAAAGACCATGATATTTAGCAACGTTTGGGGTAAAAGCGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGACCATGATATTTAGCAACGTTTGGGGTAAAAGCGC
36636931 TGCTAAAGAC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 54 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (69 bp):
GTTTGTGGAAAAAGCGCCGCTAAAGACCATGATATTTAGCAACGTTTGGGGTAAAAGCGCGTTAG
CGGC
Found at i:36636960 original size:43 final size:43
Alignment explanation
Indices: 36636863--36636960 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
36636853 TAAAAGCGCG
*
36636863 TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGATAT
1 TTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGACCATGATAT
** * *
36636906 TTAGCAACGTTTGGGGTAAAAGCGCTGCTAAAGACCATGATCT
1 TTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGACCATGATAT
36636949 TTAGCGGCGTTT
1 TTAGCGGCGTTT
36636961 TTTCACATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTGGGGTAAAAGCGCCGCTAAAGACCATGATAT
Found at i:36641635 original size:71 final size:71
Alignment explanation
Indices: 36641549--36641691 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
36641539 GACATCAAAG
36641549 TTGGAAACAACAAACATTAGATCAAAACTTTAAACCATGCACCAAATGGAAACAAAAACTTCTAG
1 TTGGAAACAACAAACATTAGATCAAAACTTTAAACCATGCACCAAATGGAAACAAAAACTTCTAG
36641614 CTAACT
66 CTAACT
* *
36641620 TTGGAAACAATAAACATTAGATCAAAACTTTAAACCATGCACCATATGGAAACAAAAACTTCTAG
1 TTGGAAACAACAAACATTAGATCAAAACTTTAAACCATGCACCAAATGGAAACAAAAACTTCTAG
36641685 CTAACT
66 CTAACT
36641691 T
1 T
36641692 GGATGTGAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (71 bp):
TTGGAAACAACAAACATTAGATCAAAACTTTAAACCATGCACCAAATGGAAACAAAAACTTCTAG
CTAACT
Found at i:36642185 original size:39 final size:39
Alignment explanation
Indices: 36642142--36642218 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
36642132 TAGGAAAAAG
* *
36642142 CCTAAAGTGTATCATACCTGCTTGAAAAAGCCATATACT
1 CCTAAAGTGTATCATACCTACTTAAAAAAGCCATATACT
36642181 CCTAAAGTGTATCATACCTACTTAAAAAAGCCATATAC
1 CCTAAAGTGTATCATACCTACTTAAAAAAGCCATATAC
36642219 CAAAAAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.27
Consensus pattern (39 bp):
CCTAAAGTGTATCATACCTACTTAAAAAAGCCATATACT
Found at i:36644369 original size:20 final size:21
Alignment explanation
Indices: 36644329--36644369 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36644319 AAACGCCGCA
36644329 AAAAATCATTTCATTTCGAAC
1 AAAAATCATTTCATTTCGAAC
*
36644350 AAAAATCATTTTATTT-GAAC
1 AAAAATCATTTCATTTCGAAC
36644370 TAATATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (21 bp):
AAAAATCATTTCATTTCGAAC
Found at i:36644387 original size:10 final size:11
Alignment explanation
Indices: 36644361--36644515 Score: 63
Period size: 12 Copynumber: 13.5 Consensus size: 11
36644351 AAAATCATTT
*
36644361 TATTTGAACTAA
1 TATTTAAACT-A
36644373 TATTTAAA-TA
1 TATTTAAACTA
* *
36644383 TATTTATTAATTC
1 TATTTA--AACTA
36644396 TATTTAAACTAA
1 TATTTAAACT-A
36644408 TATTTAAA-TA
1 TATTTAAACTA
* *
36644418 TATTTATTAATTC
1 TATTTA--AACTA
36644431 TATTTAAACTAA
1 TATTTAAACT-A
36644443 TATTT-AA--A
1 TATTTAAACTA
*
36644451 TATTTAAATATA
1 TATTTAAA-CTA
36644463 TTTTATTTAAACT-
1 ---TATTTAAACTA
* *
36644476 TATTTATTAATTC
1 TATTTA--AACTA
36644489 TATTTAAACTAA
1 TATTTAAACT-A
36644501 TATTTAAA-TA
1 TATTTAAACTA
36644511 TATTT
1 TATTT
36644516 TATTTAAACT
Statistics
Matches: 113, Mismatches: 11, Indels: 40
0.69 0.07 0.24
Matches are distributed among these distances:
8 6 0.05
9 2 0.02
10 26 0.23
11 14 0.12
12 36 0.32
13 20 0.18
14 1 0.01
15 8 0.07
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (11 bp):
TATTTAAACTA
Found at i:36644407 original size:35 final size:35
Alignment explanation
Indices: 36644361--36644563 Score: 200
Period size: 35 Copynumber: 5.7 Consensus size: 35
36644351 AAAATCATTT
*
36644361 TATTTGAACTAATATTTAAATATATTTATTAATTC
1 TATTTAAACTAATATTTAAATATATTTATTAATTC
36644396 TATTTAAACTAATATTTAAATATATTTATTAATTC
1 TATTTAAACTAATATTTAAATATATTTATTAATTC
* * *
36644431 TATTTAAACTAATATTTAAATAT-TTAAATATATTT
1 TATTTAAACTAATATTTAAATATATTTATTA-ATTC
* * * * **
36644466 TATTTAAACTTATTTATTAATTCTATTTA--AACTAA
1 TATTTAAACTAATAT-TTAAATATATTTATTAA-TTC
36644501 TATTTAAA-TATATTTTATTTAAACT-TATTTATTAATTC
1 TATTTAAACTA-A---TATTTAAA-TATATTTATTAATTC
*
36644539 TATTTAAATTAATATTTAAATATAT
1 TATTTAAACTAATATTTAAATATAT
36644564 CAAATGGTTT
Statistics
Matches: 139, Mismatches: 16, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
34 8 0.06
35 95 0.68
36 6 0.04
37 13 0.09
38 13 0.09
39 4 0.03
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (35 bp):
TATTTAAACTAATATTTAAATATATTTATTAATTC
Found at i:36644470 original size:58 final size:58
Alignment explanation
Indices: 36644408--36644561 Score: 227
Period size: 50 Copynumber: 2.8 Consensus size: 58
36644398 TTTAAACTAA
36644408 TATTTAAA-TATATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATATTT
1 TATTTAAACT-TATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATATTT
36644466 TATTTAAACTTATTTATTAATTCTATTTAAAC-------T-AATATTTAAATATATTT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATATTT
*
36644516 TATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAATAT
1 TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATAT
36644562 ATCAAATGGT
Statistics
Matches: 86, Mismatches: 1, Indels: 18
0.82 0.01 0.17
Matches are distributed among these distances:
50 48 0.56
51 1 0.01
57 1 0.01
58 35 0.41
59 1 0.01
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.54
Consensus pattern (58 bp):
TATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTTAAATATATTT
Found at i:36644943 original size:8 final size:8
Alignment explanation
Indices: 36644891--36644954 Score: 57
Period size: 8 Copynumber: 8.6 Consensus size: 8
36644881 CATAAAGTCT
*
36644891 AACCCCCA
1 AACCCCTA
36644899 AACCCCT-
1 AACCCCTA
36644906 AA-CCCTA
1 AACCCCTA
*
36644913 AA-CCTTA
1 AACCCCTA
*
36644920 AATCCC--
1 AACCCCTA
*
36644926 AACCCTTA
1 AACCCCTA
36644934 AACCCCTA
1 AACCCCTA
36644942 AACCCCTA
1 AACCCCTA
36644950 AACCC
1 AACCC
36644955 TAACCCGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
6 8 0.17
7 10 0.22
8 28 0.61
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (8 bp):
AACCCCTA
Found at i:36644969 original size:57 final size:58
Alignment explanation
Indices: 36644847--36644970 Score: 130
Period size: 57 Copynumber: 2.2 Consensus size: 58
36644837 CCCGACCTCT
* * ** *
36644847 GAATCCCTAAACCTTAAATCTCTAACTCTTAACCCATAAAGTCTAACCCCCAAACCCC
1 GAATCCCTAAACCTTAAATCTCCAACCCTTAACCCATAAACCCTAACACCCAAACCCC
* * *
36644905 TAA-CCCTAAACCTTAAATC-CCAACCCTTAAACCCCTAAACCCCTAA-ACCCTAA-CCC
1 GAATCCCTAAACCTTAAATCTCCAACCCTT-AACCCATAAA-CCCTAACACCCAAACCCC
36644961 GAATCCCTAA
1 GAATCCCTAA
36644971 CCCCTAAACT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
56 12 0.22
57 36 0.67
58 6 0.11
ACGTcount: A:0.37, C:0.40, G:0.02, T:0.20
Consensus pattern (58 bp):
GAATCCCTAAACCTTAAATCTCCAACCCTTAACCCATAAACCCTAACACCCAAACCCC
Found at i:36644973 original size:43 final size:43
Alignment explanation
Indices: 36644891--36644979 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
36644881 CATAAAGTCT
* *
36644891 AACCCCCAAACCCCTAACCCTAAACCTTAAATCCCAACCCTTA
1 AACCCCCAAACCCCTAACCCTAAACCTCAAATCCCAACCCCTA
* *
36644934 AACCCCTAAACCCCTAAACCCT-AACC-CGAATCCCTAACCCCTA
1 AACCCCCAAACCCCT-AACCCTAAACCTCAAATCCC-AACCCCTA
36644977 AAC
1 AAC
36644980 TCTAACCTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
42 6 0.15
43 28 0.70
44 6 0.15
ACGTcount: A:0.37, C:0.47, G:0.01, T:0.15
Consensus pattern (43 bp):
AACCCCCAAACCCCTAACCCTAAACCTCAAATCCCAACCCCTA
Found at i:36644974 original size:27 final size:27
Alignment explanation
Indices: 36644937--36644997 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 27
36644927 ACCCTTAAAC
36644937 CCCTAAACCCCTAAACCCTAACCCGAAT
1 CCCT-AACCCCTAAACCCTAACCCGAAT
* *
36644965 CCCTAACCCCTAAACTCTAACCTGAAT
1 CCCTAACCCCTAAACCCTAACCCGAAT
36644992 CCCTAA
1 CCCTAA
36644998 ACCAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.34, C:0.44, G:0.03, T:0.18
Consensus pattern (27 bp):
CCCTAACCCCTAAACCCTAACCCGAAT
Found at i:36644986 original size:14 final size:14
Alignment explanation
Indices: 36644899--36644986 Score: 74
Period size: 14 Copynumber: 6.3 Consensus size: 14
36644889 CTAACCCCCA
36644899 AACCCCT-AACCCT
1 AACCCCTAAACCCT
* *
36644912 AAACCTTAAATCCC-
1 AACCCCTAAA-CCCT
*
36644926 AACCCTTAAACCCCT
1 AACCCCTAAA-CCCT
36644941 AAACCCCTAAACCCT
1 -AACCCCTAAACCCT
* *
36644956 AA-CCCGAATCCCT
1 AACCCCTAAACCCT
*
36644969 AACCCCTAAACTCT
1 AACCCCTAAACCCT
36644983 AACC
1 AACC
36644987 TGAATCCCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
13 16 0.27
14 28 0.47
15 7 0.12
16 9 0.15
ACGTcount: A:0.36, C:0.45, G:0.01, T:0.17
Consensus pattern (14 bp):
AACCCCTAAACCCT
Found at i:36645238 original size:14 final size:15
Alignment explanation
Indices: 36645219--36645251 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
36645209 CTTAAACCAA
36645219 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
36645233 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
36645248 AATC
1 AATC
36645252 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:36645322 original size:14 final size:14
Alignment explanation
Indices: 36645300--36645336 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
36645290 ATCCTAAATT
36645300 AACCATATACCCTA
1 AACCATATACCCTA
*
36645314 AATCATATACCCTA
1 AACCATATACCCTA
36645328 AACCATATA
1 AACCATATA
36645337 TATTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:36645829 original size:123 final size:122
Alignment explanation
Indices: 36645649--36646004 Score: 453
Period size: 123 Copynumber: 2.9 Consensus size: 122
36645639 AAATATTTTT
* * * * * *
36645649 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACCGAGAATTAGCGGTGCTTTTCCAAAAACGCCGC
1 GCGGCGCTTTTTTAAAAATGCCGCTAAAGC-CCGAGCATTAGCGGTGCTTTTTCAAAAATGCCGC
* * * * *
36645714 AAAAGACTAGAGCATTAGCGGCACTTTTCCAAAAATGCCGCTAAAGACTAGAGCATTA
65 TAAAGACTAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCAGAGCATTA
* * * *
36645772 GCGGCGCTTTTTTAAAAATGCCGCCAAAGTCCCGACCATTAGCGGCGCTTTTTCAAAAATACCGC
1 GCGGCGCTTTTTTAAAAATGCCGCTAAAG-CCCGAGCATTAGCGGTGCTTTTTCAAAAATGCCGC
* * * *
36645837 TAAAGACCAGAGCATTAGCGGCGCTTTTTCAAAACCGCCGCTAAAGCCCCGAGCATTA
65 TAAAGACTAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCAGAGCATTA
* *
36645895 GCGGCGC-TTTTTCAAAATGCCGCTAAAGCCCTGAGCATTAGCGGTGCTTTTTCAAAAATGTCGC
1 GCGGCGCTTTTTTAAAAATGCCGCTAAAGCCC-GAGCATTAGCGGTGCTTTTTCAAAAATGCCGC
* * * *
36645959 TAACGTCTAGAGCATTAGCGGCGCTTTTTCAAAAACACCTCTAAAG
65 TAAAGACTAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
36646005 CCTAGAAAGG
Statistics
Matches: 200, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
121 3 0.01
122 87 0.44
123 109 0.55
124 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (122 bp):
GCGGCGCTTTTTTAAAAATGCCGCTAAAGCCCGAGCATTAGCGGTGCTTTTTCAAAAATGCCGCT
AAAGACTAGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCAGAGCATTA
Found at i:36646010 original size:41 final size:41
Alignment explanation
Indices: 36645649--36646010 Score: 401
Period size: 41 Copynumber: 8.9 Consensus size: 41
36645639 AAATATTTTT
* * * *
36645649 GCGGCACTTTTTCAAAAACGCCGCTAAAGCAC-CGAGAATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGC-CTAGAGCATTA
* * * * *
36645690 GCGGTGCTTTTCCAAAAACGCCGCAAAAGACTAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGAGCATTA
* * *
36645731 GCGGCACTTTTCCAAAAATGCCGCTAAAGACTAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGAGCATTA
* * * *
36645772 GCGGCGCTTTTTTAAAAATGCCGCCAAAGTCC-CGACCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAG-CCTAGAGCATTA
*
36645813 GCGGCGCTTTTTCAAAAATACCGCTAAAGACC-AGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAG-CCTAGAGCATTA
** **
36645854 GCGGCGCTTTTTCAAAACCGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGAGCATTA
36645895 GCGGCGCTTTTTC-AAAATGCCGCTAAAGCCCT-GAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAG-CCTAGAGCATTA
* * * *
36645935 GCGGTGCTTTTTCAAAAATGTCGCTAACGTCTAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGAGCATTA
** *
36645976 GCGGCGCTTTTTCAAAAACACCTCTAAAGCCTAGA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGA
36646011 AAGGTCAGAA
Statistics
Matches: 273, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
40 38 0.14
41 234 0.86
42 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTAGAGCATTA
Found at i:36653280 original size:19 final size:19
Alignment explanation
Indices: 36653258--36653310 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
36653248 GATGAGCAAG
36653258 AAAAGAAAAATGAAAAAT-A
1 AAAAGAAAAA-GAAAAATGA
*
36653277 AAAAG-AAGAGAAAAATGA
1 AAAAGAAAAAGAAAAATGA
*
36653295 CAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
36653311 GAGTCAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 7 0.24
18 8 0.28
19 14 0.48
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAAGAAAAATGA
Found at i:36653288 original size:24 final size:24
Alignment explanation
Indices: 36653255--36653309 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
36653245 ACGGATGAGC
*
36653255 AAGAAAAGAAAAATGAAAAATAAA
1 AAGAAAAGAAAAATGAAAAAGAAA
* *
36653279 AAGAAGAGAAAAATGACAAAGAAA
1 AAGAAAAGAAAAATGAAAAAGAAA
36653303 AAGAAAA
1 AAGAAAA
36653310 AGAGTCAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (24 bp):
AAGAAAAGAAAAATGAAAAAGAAA
Found at i:36653307 original size:6 final size:6
Alignment explanation
Indices: 36653258--36653312 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
36653248 GATGAGCAAG
* * *
36653258 AAAAGA AAAATGA AAAATA AAAAG- AAGAGA AAAATGA CAAAGA AAAAGA
1 AAAAGA AAAA-GA AAAAGA AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA
36653307 AAAAGA
1 AAAAGA
36653313 GTCAGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 4 0.10
6 25 0.62
7 11 0.28
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (6 bp):
AAAAGA
Found at i:36655499 original size:20 final size:20
Alignment explanation
Indices: 36655474--36655513 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36655464 TAAATAGGTG
*
36655474 GCTGGACATTCATTTATGCA
1 GCTGGACATTCATTCATGCA
36655494 GCTGGACATTCATTCATGCA
1 GCTGGACATTCATTCATGCA
36655514 TGTTGCCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (20 bp):
GCTGGACATTCATTCATGCA
Found at i:36656387 original size:27 final size:27
Alignment explanation
Indices: 36656357--36656410 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
36656347 TAAGAATCGG
36656357 GTCCATAATCTTTATTACAGGTTCATT
1 GTCCATAATCTTTATTACAGGTTCATT
* *
36656384 GTCCTTAATCTTTATTACGGGTTCATT
1 GTCCATAATCTTTATTACAGGTTCATT
36656411 CTTGTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (27 bp):
GTCCATAATCTTTATTACAGGTTCATT
Found at i:36658966 original size:18 final size:18
Alignment explanation
Indices: 36658940--36658974 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36658930 ACGATGTGCC
*
36658940 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
36658958 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
36658975 CCTATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:36660068 original size:18 final size:17
Alignment explanation
Indices: 36660040--36660074 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36660030 TTTAACTAAT
36660040 TAAAATAATAAAATAAA
1 TAAAATAATAAAATAAA
*
36660057 TAAAACTAATAAGATAAA
1 TAAAA-TAATAAAATAAA
36660075 AGAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAATAAAATAAA
Found at i:36660577 original size:41 final size:41
Alignment explanation
Indices: 36660496--36660613 Score: 209
Period size: 41 Copynumber: 2.9 Consensus size: 41
36660486 TTTCTACCTT
36660496 TCAGATCTTTAGCGGCGTTTTTAAAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTT-AAAAAAGCGCCGCTAATGC
* *
36660538 TCATATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
36660579 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
1 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
36660614 AAAAACATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 51 0.71
42 21 0.29
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (41 bp):
TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
Found at i:36660724 original size:27 final size:26
Alignment explanation
Indices: 36660680--36660737 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
36660670 AAAATGGATA
**
36660680 AATTTGAAATAATGACAT-GTAAAAAT
1 AATTTGAAATAAAAACATAG-AAAAAT
36660706 AATTTGAAATAAAAAACATAGAAAAAT
1 AATTTGAAAT-AAAAACATAGAAAAAT
36660733 -ATTTG
1 AATTTG
36660738 TTAAAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 15 0.54
27 12 0.43
28 1 0.04
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.29
Consensus pattern (26 bp):
AATTTGAAATAAAAACATAGAAAAAT
Found at i:36661017 original size:14 final size:15
Alignment explanation
Indices: 36660989--36661019 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
36660979 AAGGTTTATA
36660989 GATTATGGAATTAGG
1 GATTATGGAATTAGG
36661004 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
36661018 GA
1 GA
36661020 CTTTGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:36661062 original size:7 final size:7
Alignment explanation
Indices: 36661041--36661105 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
36661031 GGGTTGTGAT
*
36661041 TTAAGGT
1 TTAAGGG
*
36661048 TTATGGG
1 TTAAGGG
36661055 TTAAGGG
1 TTAAGGG
*
36661062 TTAGGGG
1 TTAAGGG
36661069 TTAAGGG
1 TTAAGGG
36661076 TT-AGAGG
1 TTAAG-GG
*
36661083 TTAAGAG
1 TTAAGGG
*
36661090 TTAAGGA
1 TTAAGGG
*
36661097 TTTAGGG
1 TTAAGGG
36661104 TT
1 TT
36661106 TATAGATTCG
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
6 2 0.04
7 42 0.91
8 2 0.04
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (7 bp):
TTAAGGG
Found at i:36661721 original size:17 final size:16
Alignment explanation
Indices: 36661688--36661721 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36661678 ATATTAGATT
*
36661688 TAAAAAAATTAATAAA
1 TAAAAAAATTAACAAA
36661704 TAAAAAAATGTAACAAA
1 TAAAAAAAT-TAACAAA
36661721 T
1 T
36661722 TGATACAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAAATTAACAAA
Found at i:36662310 original size:118 final size:120
Alignment explanation
Indices: 36662167--36662393 Score: 354
Period size: 118 Copynumber: 1.9 Consensus size: 120
36662157 ATAATTTTTT
36662167 GCGGCGTTTTAAAGAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCCATTTTATATAG
1 GCGGCGTTTTAAAGAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCCATTTTATATAG
* *
36662232 CAAAATATTTAGTGGCGTTTTTAT-A-A-AAAAACGCCGCAAAATGTAAGCAATA
66 CAAAATATTTAGCGGCGTTTTTATAATATAAAAACGCCACAAAATGTAAGCAATA
* * * *
36662284 GCGGCGTTTTTATAA-AAAAAGGCCACAAAAAATCATTTTACTTTAAAAAATAGTCATTTTATAT
1 GCGGCG-TTTTA-AAGAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCCATTTTATAT
36662348 AGCAAAATATTTAGCGGCGTTTTTATAATATAAAAACGCCACAAAA
64 AGCAAAATATTTAGCGGCGTTTTTATAATATAAAAACGCCACAAAA
36662394 AATAATTTTA
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
117 6 0.06
118 75 0.76
119 3 0.03
120 1 0.01
121 14 0.14
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (120 bp):
GCGGCGTTTTAAAGAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCCATTTTATATAG
CAAAATATTTAGCGGCGTTTTTATAATATAAAAACGCCACAAAATGTAAGCAATA
Found at i:36662722 original size:78 final size:77
Alignment explanation
Indices: 36662282--36662714 Score: 672
Period size: 80 Copynumber: 5.5 Consensus size: 77
36662272 ATGTAAGCAA
* *
36662282 TAGCGGCGTTTTTATAAAAAAAGGCCACAAAAAATCATTTTACTTTAAAAAATAGTCATTTTATA
1 TAGCGGCGTTTTTATAAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTTATA
36662347 TAGCAAAATATT
66 TAGCAAAATATT
36662359 TAGCGGCGTTTTTATAATATAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTT
1 TAGCGGCGTTTTTAT-A-A-AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTT
36662424 ATATAGCAAAATATT
63 ATATAGCAAAATATT
*
36662439 TAGCGGCGTTTTTATAATATAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGGCATTTT
1 TAGCGGCGTTTTTAT-A-A-AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTT
*
36662504 ATATAGCAAAACATT
63 ATATAGCAAAATATT
*
36662519 TAGCGGCGTTTTTAT-ACAAAACGCCACAAAAAATAATTTTACTTT-AAAAATAGTCATTTTATA
1 TAGCGGCGTTTTTATAAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTTATA
*
36662582 TAGCAAAACATT
66 TAGCAAAATATT
* ** *
36662594 TAGCGGCATTTTTATAAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAAATAACCAGTTTAT
1 TAGCGGCGTTTTTATAAAAAAACGCCACAAAAAATAATTTTACTTT-AAAAAATAGTCATTTTAT
*
36662659 ATAGAAAAATATT
65 ATAGCAAAATATT
*
36662672 TAGCGGCGTTTTTATAAAAAAATGCCACAAAAAAATAATTTTA
1 TAGCGGCGTTTTTATAAAAAAACGCCAC-AAAAAATAATTTTA
36662715 TAAAAAAATA
Statistics
Matches: 334, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
75 43 0.13
76 57 0.17
77 16 0.05
78 52 0.16
79 15 0.04
80 151 0.45
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.33
Consensus pattern (77 bp):
TAGCGGCGTTTTTATAAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGTCATTTTATA
TAGCAAAATATT
Found at i:36664010 original size:24 final size:24
Alignment explanation
Indices: 36663965--36664024 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
36663955 AGAGACTACT
*
36663965 GTTATCTA-TCCTAAGTTGTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
* * *
36663988 TTTATCTATTTCTAATTTTTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
36664012 GTTATCTATTTCT
1 GTTATCTATTTCT
36664025 GCCTTCAACG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.58
Consensus pattern (24 bp):
GTTATCTATTTCTAAGTTGTTTAA
Found at i:36666323 original size:43 final size:43
Alignment explanation
Indices: 36666289--36666516 Score: 366
Period size: 43 Copynumber: 5.3 Consensus size: 43
36666279 GAATTGTACT
** * *
36666289 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
36666332 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
*
36666375 TTCAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
* *
36666418 TTCAGCGGCGTTTGTGGGACAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
* * *
36666461 TTTAGCTGCGTTTGTGGGAAAAACGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
36666504 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
36666517 AGTTATAAAA
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 173 1.00
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:36666607 original size:22 final size:22
Alignment explanation
Indices: 36666580--36666621 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
36666570 CCGCGCTTCT
*
36666580 AAAAGCGCCGCTAAAGGCCTAA
1 AAAAGCGCCGCTAAAAGCCTAA
36666602 AAAAGCGCCGCTAAAAGCCT
1 AAAAGCGCCGCTAAAAGCCT
36666622 GTTTTGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.21, T:0.10
Consensus pattern (22 bp):
AAAAGCGCCGCTAAAAGCCTAA
Found at i:36668409 original size:21 final size:21
Alignment explanation
Indices: 36668385--36668424 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
36668375 TTTTGGCATA
36668385 TTTTGAGCT-TGTTTAATTGTG
1 TTTTGAG-TATGTTTAATTGTG
36668406 TTTTGAGTATGTTTAATTG
1 TTTTGAGTATGTTTAATTG
36668425 CTGGTCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (21 bp):
TTTTGAGTATGTTTAATTGTG
Found at i:36677089 original size:19 final size:20
Alignment explanation
Indices: 36677051--36677086 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
36677041 AATAAAATTT
36677051 TAAAATTAATATTAATAATA
1 TAAAATTAATATTAATAATA
36677071 TAAAA-TAAT-TTAATAA
1 TAAAATTAATATTAATAA
36677087 ATACATTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATTAATATTAATAATA
Found at i:36679064 original size:22 final size:22
Alignment explanation
Indices: 36679036--36679092 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
36679026 TCACTTACCG
36679036 ACACGCCCGTGTGCAA-CCTCTC
1 ACACGCCCGTGTGCAAGCC-CTC
*
36679058 ACACGCCGGTGTGCAAGCCCTC
1 ACACGCCCGTGTGCAAGCCCTC
*
36679080 ACACTCCCGTGTG
1 ACACGCCCGTGTG
36679093 GACAGGCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.18
Consensus pattern (22 bp):
ACACGCCCGTGTGCAAGCCCTC
Found at i:36680314 original size:14 final size:14
Alignment explanation
Indices: 36680295--36680327 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
36680285 TTGCCATTTT
36680295 CCAATATTTAATTA
1 CCAATATTTAATTA
36680309 CCAATATTTAATTA
1 CCAATATTTAATTA
36680323 CCAAT
1 CCAAT
36680328 TGTAACACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (14 bp):
CCAATATTTAATTA
Found at i:36681751 original size:22 final size:21
Alignment explanation
Indices: 36681723--36681764 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
36681713 AAAATTATTT
36681723 TTTTTTAAAATATTTTATTAAA
1 TTTTTTAAAATATTTT-TTAAA
* *
36681745 TTTTTTAGATTATTTTTTAA
1 TTTTTTAAAATATTTTTTAA
36681765 TCGATTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTTAAAATATTTTTTAAA
Found at i:36685395 original size:37 final size:37
Alignment explanation
Indices: 36685285--36685368 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 37
36685275 AGTACAGTAG
* * *
36685285 TTCAGTATATTTAATAGATAATACTC-GATTGAGC-TTA
1 TTCAGTATA-TCAATAAATAACACTCAG-TTGAGCTTTA
36685322 TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
1 TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
36685359 TTCAGTATAT
1 TTCAGTATAT
36685369 TAGTAGATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 19 0.45
37 23 0.55
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (37 bp):
TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
Found at i:36686866 original size:40 final size:38
Alignment explanation
Indices: 36686822--36686903 Score: 110
Period size: 40 Copynumber: 2.1 Consensus size: 38
36686812 AAATTGGCAA
* *
36686822 GGGAGGAGAGCATTGAAGAAGAAAATAGAAGAATAAATAG
1 GGGAGGAGAGAATTGAAAAAGAAAAT-GAAGAATAAAT-G
* *
36686862 GGGAGGAGAGAATTGAAAAAGATAATGAGGAATAAATG
1 GGGAGGAGAGAATTGAAAAAGAAAATGAAGAATAAATG
36686900 GGGA
1 GGGA
36686904 TAATACATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 5 0.13
39 10 0.26
40 23 0.61
ACGTcount: A:0.50, C:0.01, G:0.35, T:0.13
Consensus pattern (38 bp):
GGGAGGAGAGAATTGAAAAAGAAAATGAAGAATAAATG
Found at i:36686990 original size:22 final size:22
Alignment explanation
Indices: 36686958--36687005 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
36686948 ATTAGTATTT
36686958 TAATATATTAAAT-TATTAAATA
1 TAATATATTAAATAT-TTAAATA
* *
36686980 TAATATTTTAAATATTTTAATA
1 TAATATATTAAATATTTAAATA
36687002 TAAT
1 TAAT
36687006 TCAATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATATATTAAATATTTAAATA
Found at i:36687030 original size:39 final size:39
Alignment explanation
Indices: 36686953--36687030 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
36686943 GAATTATTAG
* *
36686953 TATTTTAATATATTAAATTATTAAATATAATATTTTAAA
1 TATTTTAATATATTAAATTATTAAAAATAATATATTAAA
*
36686992 TATTTTAATATAATTCAA-TA-TAAAAATAACTATATTAAA
1 TATTTTAATAT-ATTAAATTATTAAAAATAA-TATATTAAA
36687031 AATATTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 8 0.24
39 21 0.62
40 5 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (39 bp):
TATTTTAATATATTAAATTATTAAAAATAATATATTAAA
Found at i:36691492 original size:125 final size:126
Alignment explanation
Indices: 36691264--36691779 Score: 712
Period size: 126 Copynumber: 4.2 Consensus size: 126
36691254 TAAGGTCAAG
* *
36691264 CAAGAACTACTATAGAAAAAGAGCGTCCACA-TGAGAGTTTTTTTTAGTACTTTTGCTGACAGTG
1 CAAGAACTACTGTAGAAAAAGAGCGTCCA-AGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTG
* *
36691328 CATCCTGCTTGAAGCATTTTTGACGCTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* ** * * *
36691390 CAGGAACTACT-TAGAAAAAGAGCGTTTAAGTGAGAGCTTTTTTCAATACTTTTGCTGACAATGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
*
36691454 ATCCTACTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * *
36691515 CAAGAACTATTGTAGAAAAAGAGCGTCTAAGTGGGAGCTTTTTTGAGTTCTTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
* *
36691580 ATCCTGCTTGAAGCATTTTTGTCACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * *
36691641 CAAG-A--AC--TAGAAATA-AGTGTCCAAGTG-GAAGATTTTTTTAGTACTTTTGCTTACAGTG
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAG-AGCTTTTTTTAGTACTTTTGCTGACAGTG
* *
36691699 CAT-CTGCTTGAAGCGTTTTTGTCACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
36691760 C-AGAAACTACTGTAGAAAAA
1 CAAG-AACTACTGTAGAAAAA
36691780 AAACAAAATC
Statistics
Matches: 349, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
118 2 0.01
119 58 0.17
120 39 0.11
121 7 0.02
122 2 0.01
123 1 0.00
124 8 0.02
125 113 0.32
126 119 0.34
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:36691890 original size:35 final size:34
Alignment explanation
Indices: 36691838--36691925 Score: 81
Period size: 35 Copynumber: 2.6 Consensus size: 34
36691828 ACCCTTTTAC
*
36691838 AAAAACCTTATAA-CCTAA-ACACAAAATTATTTTT
1 AAAAATCTTA-AACCCTAATACA-AAAATTATTTTT
** ** *
36691872 AAAAATCTCTAAACCCTAATTTAATTATTTTTTTT
1 AAAAATCT-TAAACCCTAATACAAAAATTATTTTT
36691907 AAAAATCTTAAACCCTAAT
1 AAAAATCTTAAACCCTAAT
36691926 TAATTAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
34 20 0.44
35 24 0.53
36 1 0.02
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (34 bp):
AAAAATCTTAAACCCTAATACAAAAATTATTTTT
Found at i:36691905 original size:34 final size:34
Alignment explanation
Indices: 36691862--36691963 Score: 125
Period size: 37 Copynumber: 2.9 Consensus size: 34
36691852 CTAAACACAA
*
36691862 AATTATTTTTAAAAATCTCTAAACCCTAATTTAATT
1 AATTTTTTTTAAAAATCT-TAAACCCTAA-TTAATT
36691898 -ATTTTTTTTAAAAATCTTAAACCCTAATTAATT
1 AATTTTTTTTAAAAATCTTAAACCCTAATTAATT
* *
36691931 AATTTTTTTAAAAAAAAATCCTAAACCCTAATT
1 AATTTTTTT---TAAAAATCTTAAACCCTAATT
36691964 TATTTTTTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
33 6 0.10
34 18 0.31
35 16 0.27
37 19 0.32
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (34 bp):
AATTTTTTTTAAAAATCTTAAACCCTAATTAATT
Found at i:36691929 original size:33 final size:35
Alignment explanation
Indices: 36691862--36691944 Score: 134
Period size: 33 Copynumber: 2.4 Consensus size: 35
36691852 CTAAACACAA
36691862 AATTATTTTTAAAAATCTCTAAACCCTAATTTAATT
1 AATT-TTTTTAAAAATCTCTAAACCCTAATTTAATT
*
36691898 ATTTTTTTTAAAAATCT-TAAACCCTAA-TTAATT
1 AATTTTTTTAAAAATCTCTAAACCCTAATTTAATT
36691931 AATTTTTTTAAAAA
1 AATTTTTTTAAAAA
36691945 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 19 0.42
34 10 0.22
35 13 0.29
36 3 0.07
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (35 bp):
AATTTTTTTAAAAATCTCTAAACCCTAATTTAATT
Found at i:36691948 original size:37 final size:33
Alignment explanation
Indices: 36691867--36691971 Score: 115
Period size: 34 Copynumber: 3.1 Consensus size: 33
36691857 CACAAAATTA
36691867 TTTTT-AAAAATCTCTAAACCCTAATTTAATTATT
1 TTTTTAAAAAATCT-TAAACCCTAA-TTAATTATT
*
36691901 TTTTTTAAAAATCTTAAACCCTAATTAATTAATT
1 TTTTTAAAAAATCTTAAACCCTAATTAATT-ATT
* *
36691935 TTTTTAAAAAAAAATCCTAAACCCTAATTTATT-TT
1 TTTTT---AAAAAATCTTAAACCCTAATTAATTATT
36691970 TT
1 TT
36691972 AAAATCCCTA
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
33 6 0.10
34 23 0.37
35 12 0.19
37 22 0.35
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (33 bp):
TTTTTAAAAAATCTTAAACCCTAATTAATTATT
Found at i:36691963 original size:33 final size:33
Alignment explanation
Indices: 36691872--36691975 Score: 86
Period size: 37 Copynumber: 3.0 Consensus size: 33
36691862 AATTATTTTT
***
36691872 AAAAATCTCTAAACCCTAATTTAATTATTTTT-TTT
1 AAAAATC-CTAAACCCTAA-TTAATT-TTTTTAAAA
*
36691907 AAAAATCTTAAACCCTAATTAATTAATTTTTTTAAAA
1 AAAAATCCTAAACCC----TAATTAATTTTTTTAAAA
*
36691944 AAAAATCCTAAACCCTAATTTA-TTTTTTAAAA
1 AAAAATCCTAAACCCTAATTAATTTTTTTAAAA
36691976 TCCCTACACC
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
32 10 0.17
33 6 0.10
34 7 0.12
35 7 0.12
36 5 0.09
37 20 0.34
38 3 0.05
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.42
Consensus pattern (33 bp):
AAAAATCCTAAACCCTAATTAATTTTTTTAAAA
Found at i:36691997 original size:27 final size:27
Alignment explanation
Indices: 36691945--36692004 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
36691935 TTTTTAAAAA
36691945 AAAATCCTAAACCCTAATTTATTTTTT
1 AAAATCCTAAACCCTAATTTATTTTTT
* *
36691972 AAAATCCCTACACCTTAATTTATTTTTT
1 AAAAT-CCTAAACCCTAATTTATTTTTT
36692000 AAAAT
1 AAAAT
36692005 ATCTAACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.43
Consensus pattern (27 bp):
AAAATCCTAAACCCTAATTTATTTTTT
Found at i:36692021 original size:27 final size:27
Alignment explanation
Indices: 36691945--36692021 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
36691935 TTTTTAAAAA
*
36691945 AAAAT-CCTAAACCCTAATTTATTTTTT
1 AAAATACCT-AACCATAATTTATTTTTT
* *
36691972 AAAATCCCTACACCTTAATTTATTTTTT
1 AAAATACCTA-ACCATAATTTATTTTTT
* *
36692000 AAAATATCTAACCATAAATTAT
1 AAAATACCTAACCATAATTTAT
36692022 AAACTCTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 16 0.37
28 27 0.63
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.42
Consensus pattern (27 bp):
AAAATACCTAACCATAATTTATTTTTT
Found at i:36708846 original size:51 final size:51
Alignment explanation
Indices: 36708772--36708960 Score: 258
Period size: 51 Copynumber: 3.7 Consensus size: 51
36708762 CGATGAACAT
*
36708772 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-ACTTGGTCAC
* * * * *
36708823 ATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGATTTGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-ACTTGGTCAC
* *
36708874 GTGTGTAGTACTATGTGAAGGCTACTACGTGGATCG-TAAAACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCAC
*
36708924 GTGTGTAGTACTATGTGAAGGCTATTACGTGTATCGA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
36708961 ATGATAATAA
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
50 46 0.38
51 74 0.62
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (51 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAACTTGGTCAC
Found at i:36708853 original size:26 final size:26
Alignment explanation
Indices: 36708773--36708855 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
36708763 GATGAACATG
*
36708773 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* *
36708799 CGTGTA-T-CGATAAAT-AATGG-TCAC-A
1 TGTGTAGTAC--TAAGTGAA-GGCT-ACTA
36708824 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
36708850 TGTGTA
1 TGTGTA
36708856 CCGAAAAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
26 23 0.53
27 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:36708986 original size:101 final size:102
Alignment explanation
Indices: 36708776--36708993 Score: 253
Period size: 101 Copynumber: 2.1 Consensus size: 102
36708766 GAACATGTGT
* *
36708776 GTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAGTGA
1 GTAGTACTATGTGAAGGCTACTACGTGGATCGATAAATAATGATCACATGTGTAGTACTAAGTGA
* * ** * * *
36708841 AGGCTACTATGTGTACCGAAAAGATTTGGTCACGTGT
66 AGGCTACTACGTGTACCGAAAAGATATAATAACATGA
* * *
36708878 GTAGTACTATGTGAAGGCTACTACGTGGATCG-TAAA-ACTTGATCACGTGTGTAGTACTATGTG
1 GTAGTACTATGTGAAGGCTACTACGTGGATCGATAAATA-ATGATCACATGTGTAGTACTAAGTG
* * *
36708941 AAGGCTATTACGTGTATCG-AATGATAATAATAACATGA
65 AAGGCTACTACGTGTACCGAAAAGAT-ATAATAACATGA
*
36708979 GTGGTACTATGTGAA
1 GTAGTACTATGTGAA
36708994 AACCCCAAAA
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
100 6 0.06
101 61 0.62
102 31 0.32
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (102 bp):
GTAGTACTATGTGAAGGCTACTACGTGGATCGATAAATAATGATCACATGTGTAGTACTAAGTGA
AGGCTACTACGTGTACCGAAAAGATATAATAACATGA
Found at i:36716482 original size:12 final size:12
Alignment explanation
Indices: 36716436--36716485 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
36716426 ACTTAGTCAC
36716436 TTTAATATTAAA
1 TTTAATATTAAA
36716448 -TTAATATAATAAA
1 TTTAATAT--TAAA
*
36716461 TATT-AGATTAAA
1 T-TTAATATTAAA
36716473 TTTAATATTAAA
1 TTTAATATTAAA
36716485 T
1 T
36716486 CTTATTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
11 9 0.29
12 13 0.42
13 4 0.13
14 3 0.10
15 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:36719485 original size:29 final size:29
Alignment explanation
Indices: 36719422--36719489 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
36719412 TAATCAACCG
*
36719422 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36719451 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36719480 CGCACACTTA
1 CGCACACTTA
36719490 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36719602 original size:174 final size:174
Alignment explanation
Indices: 36719311--36719638 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
36719301 AACTCAAGGT
* * *
36719311 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36719376 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
36719441 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
36719485 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
36719550 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
36719615 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36719639 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36719630 original size:29 final size:30
Alignment explanation
Indices: 36719591--36719669 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36719581 CTTAATAATC
36719591 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
36719621 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
36719650 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36719670 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:36725948 original size:22 final size:23
Alignment explanation
Indices: 36725932--36725976 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
36725922 AATTCATGCC
36725932 ACAAAATATACCAATTCATCATCA
1 ACAAAATATACCAATTCATCA-CA
*
36725956 ACAAAATGTACCAATTCATCA
1 ACAAAATATACCAATTCATCA
36725977 ACCTTATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (23 bp):
ACAAAATATACCAATTCATCACA
Found at i:36725976 original size:21 final size:21
Alignment explanation
Indices: 36725922--36725978 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
36725912 ATTATCATAT
*
36725922 AATTCATGCCACAAAATATACC
1 AATTCAT-CAACAAAATATACC
*
36725944 AATTCATCATCAACAAAATGTACC
1 AA-T--TCATCAACAAAATATACC
36725968 AATTCATCAAC
1 AATTCATCAAC
36725979 CTTATACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 8 0.27
22 2 0.07
23 2 0.07
24 14 0.47
25 4 0.13
ACGTcount: A:0.46, C:0.26, G:0.04, T:0.25
Consensus pattern (21 bp):
AATTCATCAACAAAATATACC
Found at i:36726919 original size:42 final size:42
Alignment explanation
Indices: 36726887--36726990 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
36726877 TAGCTTAGCT
36726887 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
* * *
36726929 ATGGTCTTACACGAATCTCATATCGATGCAAATGTCCCAGTC
1 ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
*
36726971 ATGGTCTTACATGAATCTCA
1 ATGGTCTTACACGAATCTCA
36726991 CATCCCGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGAATCTCATATCGATGCCAATGTCCTAGAC
Found at i:36732352 original size:379 final size:379
Alignment explanation
Indices: 36731653--36732410 Score: 1516
Period size: 379 Copynumber: 2.0 Consensus size: 379
36731643 ATCATTCCTG
36731653 TCCGATAGCTTATCCCTGTGTGAATTAAACAACTCGTTTACCTTATCCATGGTGGAACCAAGGGA
1 TCCGATAGCTTATCCCTGTGTGAATTAAACAACTCGTTTACCTTATCCATGGTGGAACCAAGGGA
36731718 CATCTTTACATAGTCTCTAGACTACTCTTTCCAGTTTGCTATGCGATCCTCGACCCCATCGAGTG
66 CATCTTTACATAGTCTCTAGACTACTCTTTCCAGTTTGCTATGCGATCCTCGACCCCATCGAGTG
36731783 CCTCCTTTACATCCTCCACGGATCCCTCGAGTTTTCCCACACGATCCTCTACTGCCGATAATGTC
131 CCTCCTTTACATCCTCCACGGATCCCTCGAGTTTTCCCACACGATCCTCTACTGCCGATAATGTC
36731848 TCCCTCAAAGACTTTCTTGCCCACCTTTGTTCAAACTCTTCTTTCGACATCCCAACGGTGCCTTT
196 TCCCTCAAAGACTTTCTTGCCCACCTTTGTTCAAACTCTTCTTTCGACATCCCAACGGTGCCTTT
36731913 GAACCAACAACTCAGATATCACTTGGTTCAAAAGCTGGCTCGAATACCACTTGTCACGGGGCTAG
261 GAACCAACAACTCAGATATCACTTGGTTCAAAAGCTGGCTCGAATACCACTTGTCACGGGGCTAG
36731978 ACCTTTCGTCTCGCAAACCGTGCGGCCTTAGGCGATCCGTTTGCTCTAAACTCA
326 ACCTTTCGTCTCGCAAACCGTGCGGCCTTAGGCGATCCGTTTGCTCTAAACTCA
36732032 TCCGATAGCTTATCCCTGTGTGAATTAAACAACTCGTTTACCTTATCCATGGTGGAACCAAGGGA
1 TCCGATAGCTTATCCCTGTGTGAATTAAACAACTCGTTTACCTTATCCATGGTGGAACCAAGGGA
36732097 CATCTTTACATAGTCTCTAGACTACTCTTTCCAGTTTGCTATGCGATCCTCGACCCCATCGAGTG
66 CATCTTTACATAGTCTCTAGACTACTCTTTCCAGTTTGCTATGCGATCCTCGACCCCATCGAGTG
36732162 CCTCCTTTACATCCTCCACGGATCCCTCGAGTTTTCCCACACGATCCTCTACTGCCGATAATGTC
131 CCTCCTTTACATCCTCCACGGATCCCTCGAGTTTTCCCACACGATCCTCTACTGCCGATAATGTC
36732227 TCCCTCAAAGACTTTCTTGCCCACCTTTGTTCAAACTCTTCTTTCGACATCCCAACGGTGCCTTT
196 TCCCTCAAAGACTTTCTTGCCCACCTTTGTTCAAACTCTTCTTTCGACATCCCAACGGTGCCTTT
36732292 GAACCAACAACTCAGATATCACTTGGTTCAAAAGCTGGCTCGAATACCACTTGTCACGGGGCTAG
261 GAACCAACAACTCAGATATCACTTGGTTCAAAAGCTGGCTCGAATACCACTTGTCACGGGGCTAG
36732357 ACCTTTCGTCTCGCAAACCGTGCGGCCTTAGGCGATCCGTTTGCTCTAAACTCA
326 ACCTTTCGTCTCGCAAACCGTGCGGCCTTAGGCGATCCGTTTGCTCTAAACTCA
36732411 CCTAAGTCAG
Statistics
Matches: 379, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
379 379 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (379 bp):
TCCGATAGCTTATCCCTGTGTGAATTAAACAACTCGTTTACCTTATCCATGGTGGAACCAAGGGA
CATCTTTACATAGTCTCTAGACTACTCTTTCCAGTTTGCTATGCGATCCTCGACCCCATCGAGTG
CCTCCTTTACATCCTCCACGGATCCCTCGAGTTTTCCCACACGATCCTCTACTGCCGATAATGTC
TCCCTCAAAGACTTTCTTGCCCACCTTTGTTCAAACTCTTCTTTCGACATCCCAACGGTGCCTTT
GAACCAACAACTCAGATATCACTTGGTTCAAAAGCTGGCTCGAATACCACTTGTCACGGGGCTAG
ACCTTTCGTCTCGCAAACCGTGCGGCCTTAGGCGATCCGTTTGCTCTAAACTCA
Found at i:36733263 original size:88 final size:88
Alignment explanation
Indices: 36733114--36733289 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
36733104 AATTAACTTC
36733114 GATAAATATCATATTGATTTTAATTGATTTAATTAATTTAAGTTTACTTGATCAAAATTAATTTT
1 GATAAATATCATATTGATTTTAATTGATTTAATTAATTTAAGTTTACTTGATCAAAATTAATTTT
36733179 TCCAAAAATCACTTAGATTTTCT
66 TCCAAAAATCACTTAGATTTTCT
36733202 GATAAATATCATATTGATTTTAATTGATTTAATTAATTTAAGTTTACTTGATCAAAATTAATTTT
1 GATAAATATCATATTGATTTTAATTGATTTAATTAATTTAAGTTTACTTGATCAAAATTAATTTT
36733267 TCCAAAAATCACTTAGATTTTCT
66 TCCAAAAATCACTTAGATTTTCT
36733290 AATTTAATTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.47
Consensus pattern (88 bp):
GATAAATATCATATTGATTTTAATTGATTTAATTAATTTAAGTTTACTTGATCAAAATTAATTTT
TCCAAAAATCACTTAGATTTTCT
Found at i:36735551 original size:42 final size:42
Alignment explanation
Indices: 36735492--36735600 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
36735482 TTTAATATTG
* * *
36735492 AAATATGATTCGCATGTTAATCAT-ACCGACTATGTTGATTAT
1 AAATATGATTTGCATGTTAAGCATGA-CGACTATGTGGATTAT
*
36735534 AAATATGATTTGCATGTTAAGCATGACGAGTATGTGGATTAT
1 AAATATGATTTGCATGTTAAGCATGACGACTATGTGGATTAT
* *
36735576 AAATTTGAATTGCATGTTAAGCATG
1 AAATATGATTTGCATGTTAAGCATG
36735601 CCCATTGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 59 0.98
43 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (42 bp):
AAATATGATTTGCATGTTAAGCATGACGACTATGTGGATTAT
Found at i:36735761 original size:48 final size:48
Alignment explanation
Indices: 36735690--36735806 Score: 171
Period size: 48 Copynumber: 2.4 Consensus size: 48
36735680 TTCACTGTAA
36735690 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
* * * * *
36735738 TATTGAGTGGCTTGGCCATAACATTATTGATTGGCTTGGCCACAATGT
1 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
* *
36735786 TATTGATTGGCTTGTCCACAA
1 TATTGAGTGGCTTGACCACAA
36735807 TGTGTAGTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (48 bp):
TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
Found at i:36735807 original size:24 final size:24
Alignment explanation
Indices: 36735690--36735809 Score: 141
Period size: 24 Copynumber: 5.0 Consensus size: 24
36735680 TTCACTGTAA
**
36735690 TATTGAGTGGCTTGACCACAACAT
1 TATTGAGTGGCTTGACCACAATGT
*
36735714 TATTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAATGT
* * **
36735738 TATTGAGTGGCTTGGCCATAACAT
1 TATTGAGTGGCTTGACCACAATGT
* *
36735762 TATTGATTGGCTTGGCCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
* *
36735786 TATTGATTGGCTTGTCCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
36735810 GTAGTTTTAC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAATGT
Found at i:36742792 original size:132 final size:132
Alignment explanation
Indices: 36742555--36742814 Score: 502
Period size: 132 Copynumber: 2.0 Consensus size: 132
36742545 ATCTCTTAAC
36742555 ATACTGTCCATATGATCTTTTCGTTGCTTCTATATGAAAATAGACTCATCAAGATTCGAATACAT
1 ATACTGTCCATATGATCTTTTCGTTGCTTCTATATGAAAATAGACTCATCAAGATTCGAATACAT
36742620 AATTTATTCATCAATTAATCCCACTCCTACTATTTTTAGTGATTTTTCAATCTCACGTCACTGTA
66 AATTTATTCATCAATTAATCCCACTCCTACTATTTTTAGTGATTTTTCAATCTCACGTCACTGTA
36742685 AT
131 AT
* *
36742687 ATACTGTCCATATGATCTTTTCGTTGCTTCTATATGAAAATAGACTCATCGAGCTTCGAATACAT
1 ATACTGTCCATATGATCTTTTCGTTGCTTCTATATGAAAATAGACTCATCAAGATTCGAATACAT
36742752 AATTTATTCATCAATTAATCCCACTCCTACTATTTTTAGTGATTTTTCAATCTCACGTCACTG
66 AATTTATTCATCAATTAATCCCACTCCTACTATTTTTAGTGATTTTTCAATCTCACGTCACTG
36742815 CTGCTGCCAG
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 126 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (132 bp):
ATACTGTCCATATGATCTTTTCGTTGCTTCTATATGAAAATAGACTCATCAAGATTCGAATACAT
AATTTATTCATCAATTAATCCCACTCCTACTATTTTTAGTGATTTTTCAATCTCACGTCACTGTA
AT
Found at i:36743790 original size:29 final size:29
Alignment explanation
Indices: 36743727--36743794 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
36743717 TAATCAACCG
36743727 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36743756 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36743785 CGCACACTTA
1 CGCACACTTA
36743795 CCTTTCCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36743907 original size:174 final size:174
Alignment explanation
Indices: 36743616--36743943 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
36743606 AACTCAAGGT
* ** *
36743616 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
36743681 GAAAATATATATTGGGTTCGTACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
36743746 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
36743790 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36743855 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
36743920 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36743944 TGTACAATTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTCCCGCTGTCCAAAACCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36743935 original size:29 final size:30
Alignment explanation
Indices: 36743896--36743974 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36743886 CTTAATAATC
36743896 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
36743926 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
36743955 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36743975 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:36751837 original size:240 final size:240
Alignment explanation
Indices: 36751407--36751887 Score: 935
Period size: 240 Copynumber: 2.0 Consensus size: 240
36751397 TATTTCCAGG
36751407 AGACTTAAGTTCGAGTCTTGCTGTGTACAAAGGGTGTTTATTTTGCTGCTCTTACCATGTAAGTG
1 AGACTTAAGTTCGAGTCTTGCTGTGTACAAAGGGTGTTTATTTTGCTGCTCTTACCATGTAAGTG
36751472 GTAGAGTTTGACGGAAACTCTGTTGGGGGAGTGGAGTTTGAAATTTGTGGTTGAGGAGAGGTTTT
66 GTAGAGTTTGACGGAAACTCTGTTGGGGGAGTGGAGTTTGAAATTTGTGGTTGAGGAGAGGTTTT
* *
36751537 AGGAGGAAATTGAGGAATTCTGAAGGAGGGGGAGTGTTGGTGCTGATTTTGGACTCCCAACACTC
131 AGGAGGAAATTGAGGAATTCTAAAGGAGGGGGAGTGTTGGTGCCGATTTTGGACTCCCAACACTC
36751602 ATAATTCAGCTTTGTGATTGTCAAGTGCTCTCCATTTTGTGGCTA
196 ATAATTCAGCTTTGTGATTGTCAAGTGCTCTCCATTTTGTGGCTA
*
36751647 AGACTTGAGTTCGAGTCTTGCTGTGTACAAAGGGTGTTTATTTTGCTGCTCTTACCATGTAAGTG
1 AGACTTAAGTTCGAGTCTTGCTGTGTACAAAGGGTGTTTATTTTGCTGCTCTTACCATGTAAGTG
36751712 GTAGAGTTTGACGGAAACTCTGTTGGGGGAGTGGAGTTTGAAATTTGTGGTTGAGGAGAGGTTTT
66 GTAGAGTTTGACGGAAACTCTGTTGGGGGAGTGGAGTTTGAAATTTGTGGTTGAGGAGAGGTTTT
36751777 AGGAGGAAATTGAGGAATTCTAAAGGAGGGGGAGTGTTGGTGCCGATTTTGGACTCCCAACACTC
131 AGGAGGAAATTGAGGAATTCTAAAGGAGGGGGAGTGTTGGTGCCGATTTTGGACTCCCAACACTC
36751842 ATAATTCAGCTTTGTGATTGTCAAGTGCTCTCCATTTTGTGGCTA
196 ATAATTCAGCTTTGTGATTGTCAAGTGCTCTCCATTTTGTGGCTA
36751887 A
1 A
36751888 CCCTTTTTGC
Statistics
Matches: 238, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
240 238 1.00
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.34
Consensus pattern (240 bp):
AGACTTAAGTTCGAGTCTTGCTGTGTACAAAGGGTGTTTATTTTGCTGCTCTTACCATGTAAGTG
GTAGAGTTTGACGGAAACTCTGTTGGGGGAGTGGAGTTTGAAATTTGTGGTTGAGGAGAGGTTTT
AGGAGGAAATTGAGGAATTCTAAAGGAGGGGGAGTGTTGGTGCCGATTTTGGACTCCCAACACTC
ATAATTCAGCTTTGTGATTGTCAAGTGCTCTCCATTTTGTGGCTA
Found at i:36760442 original size:21 final size:21
Alignment explanation
Indices: 36760417--36760481 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
36760407 TAGCCTTCGG
36760417 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
*
36760438 GCTTCAG-TTAGC-CTTCA-G-
1 GCTTCCGTTTAGCACTT-ATGT
36760456 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
36760477 GCTTC
1 GCTTC
36760482 AGTTAGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 6 0.16
19 10 0.27
20 10 0.27
21 11 0.30
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:36760445 original size:39 final size:39
Alignment explanation
Indices: 36760399--36760487 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
36760389 GCTCTGATGA
*
36760399 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
36760438 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
36760477 GCTTCAGTTAG
1 GCTTCAGTTAG
36760488 ATTTCGGGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
Found at i:36764983 original size:40 final size:39
Alignment explanation
Indices: 36764939--36765043 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
36764929 AGTGACCATA
*
36764939 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
36764979 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36765017 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
36765044 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36765000 original size:39 final size:40
Alignment explanation
Indices: 36764899--36765062 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
36764889 TTGAATGATG
* *
36764899 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
36764939 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
36764978 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
36765018 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
36765058 TCCGG
1 TCCGG
36765063 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:36765062 original size:79 final size:80
Alignment explanation
Indices: 36764899--36765049 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
36764889 TTGAATGATG
*
36764899 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
36764964 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
36764979 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
36765041 TTGAACGAG
64 TTGAACGAG
36765050 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:36768065 original size:45 final size:45
Alignment explanation
Indices: 36768001--36768855 Score: 1710
Period size: 45 Copynumber: 19.0 Consensus size: 45
36767991 ATGTCCCCTA
36768001 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768046 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768091 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768136 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768181 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768226 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768271 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768316 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768361 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768406 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768451 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768496 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768541 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768586 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768631 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768676 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768721 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768766 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768811 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
1 GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
36768856 TTTGATGAAT
Statistics
Matches: 810, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 810 1.00
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.36
Consensus pattern (45 bp):
GAAATTCGAGGTTCATATTTTCCGGCGGACTTGATGCTTTTGCCG
Found at i:36778034 original size:40 final size:40
Alignment explanation
Indices: 36777973--36778060 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
36777963 AGACACACAC
*
36777973 CCGTGTCCCTCACACGGCCACGACACG-CTCGTGTCCTAG-
1 CCGTGTCCCTCACACGACCACGACACGCCT-GTGTCCTAGA
36778012 CCTGTGTCCCTCACACGACCACGACACGCCTGTGTCCTAGA
1 CC-GTGTCCCTCACACGACCACGACACGCCTGTGTCCTAGA
36778053 CCGTGTCC
1 CCGTGTCC
36778061 AAAAACATGG
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
39 2 0.04
40 39 0.87
41 4 0.09
ACGTcount: A:0.16, C:0.43, G:0.22, T:0.19
Consensus pattern (40 bp):
CCGTGTCCCTCACACGACCACGACACGCCTGTGTCCTAGA
Found at i:36778353 original size:38 final size:38
Alignment explanation
Indices: 36778302--36778377 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
36778292 CCTGTGTGTA
*
36778302 CAATATAAAGCTATTTACCAAGCCTTATTGCCACCCTT
1 CAATATAAAGCTATTTACCAAGCCTCATTGCCACCCTT
*
36778340 CAATATAAGGCTATTTACCAAGCCTCATTGCCACCCTT
1 CAATATAAAGCTATTTACCAAGCCTCATTGCCACCCTT
36778378 ACCTACCTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (38 bp):
CAATATAAAGCTATTTACCAAGCCTCATTGCCACCCTT
Found at i:36779018 original size:47 final size:47
Alignment explanation
Indices: 36778945--36779169 Score: 237
Period size: 47 Copynumber: 4.8 Consensus size: 47
36778935 TAGGTAAGGT
*
36778945 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* *
36778992 GTCC-ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC-AA
* * ** *
36779040 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AA
* * *
36779086 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTTATCTCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AA
* * *
36779132 ACCGATGCCATGTCCCAGACATGGTCTTGCATTGGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
36779170 TCATAATGTG
Statistics
Matches: 148, Mismatches: 23, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
46 63 0.43
47 66 0.45
48 19 0.13
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:36779205 original size:140 final size:141
Alignment explanation
Indices: 36778945--36779206 Score: 377
Period size: 140 Copynumber: 1.9 Consensus size: 141
36778935 TAGGTAAGGT
* **
36778945 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGTCCATGCCATGTCCCAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAAACCATGCCATGTCCCAG
*
36779010 ACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCT
36779075 TACGTCTCGAG
131 TACGTCTCGAG
*
36779086 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTTATCTCAAAACCGATGCCATGTCCCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAAACC-ATGCCATGTCCCA
* * * * * * *
36779149 GACATGGTCTTGCATTGGCTCTCATAAT-GTGGTCGATGCATGTCCTAAACATGTCTTA
65 GACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTA
36779207 TACTAGCTCA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
139 24 0.22
140 75 0.70
141 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAAACCATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:36783278 original size:40 final size:40
Alignment explanation
Indices: 36783171--36783387 Score: 219
Period size: 40 Copynumber: 5.5 Consensus size: 40
36783161 CGGATGATAA
* * * *
36783171 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTCACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* * *
36783211 CCGGGCTAAG-CCCGAAGGAAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGG-CATTCGTGCGAGTTACTATAT
* * * *
36783250 CCGGGCTAATTCCTGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
36783290 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
36783330 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
36783370 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36783388 TACTTGGCTT
Statistics
Matches: 148, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 43 0.29
40 105 0.71
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:36783373 original size:80 final size:79
Alignment explanation
Indices: 36783171--36783387 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 79
36783161 CGGATGATAA
* * *
36783171 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTCACTA-ATTCCGGGCTAAG-CCCGAAGGAAATT
1 CCGGGCTATGTCCTGAAGGCATTCGTGCGAGT-ACTATA-TCCGGGCTAAGTCCCGAAGGAAATT
*
36783234 GTGCGAGTTATTATAC
64 GTGCGAGTTACTATAC
* * *
36783250 CCGGGCTAAT-TCCTGAAGGCATTCGTGCGAGTTATTATGTCCGGGCTAAGTCCCGAAGG-CATT
1 CCGGGCT-ATGTCCTGAAGGCATTCGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGAAATT
* *
36783313 GGTGCGAGTTGCTATAT
64 -GTGCGAGTTACTATAC
* * * *
36783330 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTATGTCCTGAAGGCATTCGTGCGAGTA-CTATATCCGGGCTAAGTCCCGAAGG
36783388 TACTTGGCTT
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
79 61 0.53
80 55 0.47
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTATGTCCTGAAGGCATTCGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGAAATTGT
GCGAGTTACTATAC
Found at i:36791363 original size:40 final size:40
Alignment explanation
Indices: 36791256--36791458 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 40
36791246 TGGATGATAA
* * *
36791256 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
36791296 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
36791335 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
36791375 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * **
36791415 CCGGGCTATGTCCCGAACGCATTCGACCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
36791455 CCGG
1 CCGG
36791459 TTAAATCCTG
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 32 0.23
40 108 0.77
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:36791574 original size:33 final size:33
Alignment explanation
Indices: 36791532--36791596 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
36791522 GCTCGTAAAA
36791532 TCCCAGCAATGAGGTATGTTCATATATGCATCG
1 TCCCAGCAATGAGGTATGTTCATATATGCATCG
*
36791565 TCCCAGCAATGAGGTATGTTCGTATATGCATC
1 TCCCAGCAATGAGGTATGTTCATATATGCATC
36791597 AAATTAGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (33 bp):
TCCCAGCAATGAGGTATGTTCATATATGCATCG
Found at i:36796070 original size:43 final size:41
Alignment explanation
Indices: 36796020--36796101 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 41
36796010 AATAATATTA
** *
36796020 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGTAATGATG
1 TCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTG-AATGATG
36796063 TCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAATGA
1 TCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAATGA
36796102 GTTCAGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 5 0.14
42 10 0.28
43 21 0.58
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.22
Consensus pattern (41 bp):
TCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAATGATG
Found at i:36796179 original size:40 final size:41
Alignment explanation
Indices: 36796031--36796178 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 41
36796021 CGGGCTTCGG
* *
36796031 GCCTAGCAGGCTATAATGCCGGTGTAATG-ATGTCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGTTTAAA
* * * *
36796074 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGATTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
* ***
36796115 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
*
36796155 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
36796179 TTTGATAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
40 32 0.38
41 29 0.35
42 11 0.13
43 12 0.14
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
Found at i:36802376 original size:28 final size:28
Alignment explanation
Indices: 36802286--36802374 Score: 142
Period size: 28 Copynumber: 3.2 Consensus size: 28
36802276 TATGGTACTC
36802286 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
*
36802314 AGTGTACAAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
36802342 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
*
36802370 CGTGT
1 AGTGT
36802375 GCAAATTATC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:36802699 original size:40 final size:40
Alignment explanation
Indices: 36802600--36802704 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
36802590 GGGCTTCAAG
* * *
36802600 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* *** * **
36802641 TCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
36802681 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
36802705 TTGATGAAAG
Statistics
Matches: 50, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:36805030 original size:27 final size:27
Alignment explanation
Indices: 36805000--36805340 Score: 412
Period size: 27 Copynumber: 12.6 Consensus size: 27
36804990 TTAGTTTACC
36805000 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
36805027 AAATTTCAAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
36805054 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36805081 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
36805108 AAATCACAAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * **
36805135 AAATTACCAAAATATCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36805162 AATTTACCAAAATACCCCTAGTTCGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36805189 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36805216 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36805243 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
36805270 AAATTATTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
36805297 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36805324 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
36805341 TCGACCTGTA
Statistics
Matches: 262, Mismatches: 52, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 262 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36805065 original size:54 final size:54
Alignment explanation
Indices: 36804990--36805340 Score: 454
Period size: 54 Copynumber: 6.5 Consensus size: 54
36804980 TAAGAATACT
** * *
36804990 TTAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTTCAAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
*
36805044 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * *
36805098 TTGGTTTATAAAATCACAAAAATACCCCTGGTTTGTAAAATTACCAAAATATCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * * *
36805152 TTAGTTTACAAATTTACCAAAATACCCCTAGTTCGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* *
36805206 TTTGTTTATAAAATTACCAAAATACTCCTGGTTTGTAAAATTACCAAAATACCCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCC
* ** *
36805261 TT-GTTTGTAAAATTATTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * *
36805314 CT-GATTTGTGAAATTACTAAAATACCC
1 TTAG-TTTATAAAATTACCAAAATACCC
36805341 TCGACCTGTA
Statistics
Matches: 262, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
53 5 0.02
54 252 0.96
55 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33
Consensus pattern (54 bp):
TTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:36805351 original size:81 final size:81
Alignment explanation
Indices: 36805000--36805448 Score: 397
Period size: 81 Copynumber: 5.5 Consensus size: 81
36804990 TTAGTTTACC
* * * * *
36805000 AAATTACCAAAATACCC-CTGGTTTGTAAAATTTCAAAAATACCCTTAGTTTATAAAATTACCAA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAA
*
36805064 AATACCCCTGGTTTGTA
65 AATACCCCTGATTTGTA
* * * * * * *
36805081 AAATTACTAAAATACCCTTGGTTTATAAAATCACAAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
* * *
36805146 ATA-TCCTTAGTT-TA
66 ATACCCCTGATTTGTA
* * * * *
36805160 CAAATTTACCAAAATACCC-CTAGTTCGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACC
1 -AAA-TTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACC
* *
36805224 AAAATACTCCTGGTTTGTA
63 AAAATACCCCTGATTTGTA
* *
36805243 AAATTACCAAAATACCCCTTG-TTTGTAAAATTATTAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACCAAAATA-CCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAA
*
36805307 AATACCCCTGATTTGTG
65 AATACCCCTGATTTGTA
* ** * * * *
36805324 AAATTACTAAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAG-TTTGTAAAATTACCAA
* * **
36805388 AGTACCCTTGATTTACA
65 AATACCCCTGATTTGTA
* *** ** **
36805405 GAATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCC
36805449 TTGTACGGTA
Statistics
Matches: 298, Mismatches: 59, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
79 2 0.01
80 18 0.06
81 262 0.88
82 14 0.05
83 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:36805354 original size:27 final size:27
Alignment explanation
Indices: 36805000--36805449 Score: 303
Period size: 27 Copynumber: 16.7 Consensus size: 27
36804990 TTAGTTTACC
*
36805000 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * *
36805027 AAATTTCAAAAATACCCT-TAGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
36805054 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * *
36805081 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
36805108 AAATCACAAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
36805135 AAATTACCAAAATATCCT-TAGTT-TA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
36805160 CAAATTTACCAAAATACCC-CTAGTTCGTA
1 -AAA-TTACCAAAATACCCTCGA-TTTGTA
* * *
36805189 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
36805216 AAATTACCAAAATACTCCT-GGTTTGTA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
36805243 AAATTACCAAAATACCCCTTG-TTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
** *
36805270 AAATTATTAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
36805297 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
36805324 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
36805351 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
36805378 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
36805405 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
36805432 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
36805450 TGTACGGTAG
Statistics
Matches: 335, Mismatches: 66, Indels: 44
0.75 0.15 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.03
27 312 0.93
28 10 0.03
29 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:36805470 original size:27 final size:27
Alignment explanation
Indices: 36805433--36805762 Score: 385
Period size: 27 Copynumber: 12.3 Consensus size: 27
36805423 CGATTTACAA
* *
36805433 AATTACCGAAATACCCTTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36805460 AAATACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
36805487 AATTACCTG-ATTACCCCTATAACGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
* *
36805514 AATTCCCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36805541 AATTACCGAAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36805568 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
36805595 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36805622 AATCATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36805649 AATCATCGCAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36805676 AATTACCGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36805703 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36805730 AATTACCGAGATA-CCTTGAAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
36805756 AATTACC
1 AATTACC
36805763 ATTTTGCCCC
Statistics
Matches: 261, Mismatches: 40, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 17 0.07
27 243 0.93
28 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:36806410 original size:27 final size:27
Alignment explanation
Indices: 36806380--36806481 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
36806370 ATTCTGTTAA
* *
36806380 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
36806407 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
36806434 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
36806461 GTGACTCTGCCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
36806482 ATAACTGAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 8 0.12
27 53 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:36806666 original size:25 final size:25
Alignment explanation
Indices: 36806621--36806684 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
36806611 CATTCACATT
* *
36806621 CTAATTTTGATTCTGTTACCTGATA
1 CTAATTCTGATTCTGTCACCTGATA
* *
36806646 CTGATTCTGATTCTGTCACCTGATT
1 CTAATTCTGATTCTGTCACCTGATA
*
36806671 CTAATTCTAATTCT
1 CTAATTCTGATTCT
36806685 CATTTTGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (25 bp):
CTAATTCTGATTCTGTCACCTGATA
Found at i:36808324 original size:27 final size:27
Alignment explanation
Indices: 36807983--36808324 Score: 380
Period size: 27 Copynumber: 12.7 Consensus size: 27
36807973 TTAGTTTACC
* *
36807983 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36808010 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36808037 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36808064 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36808091 AAATTGCCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
* **
36808118 AAATTACCAAAATACACTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36808145 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36808172 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36808199 AAGTTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36808226 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * *
36808253 AAATTATTTAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
36808280 AAATTGCCAAAATGCCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36808307 AAATTACTAAAATACCCT
1 AAATTACCAAAATACCCT
36808325 CGACCTATAA
Statistics
Matches: 259, Mismatches: 54, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.00
27 258 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:36808337 original size:27 final size:27
Alignment explanation
Indices: 36808307--36808366 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
36808297 TTGATTTGTG
*
36808307 AAATTACTAAAATACCCTCGACCTATA
1 AAATTACTAAAAGACCCTCGACCTATA
* * * *
36808334 AAATTATTGAAAGACCCTCGACTTGTA
1 AAATTACTAAAAGACCCTCGACCTATA
36808361 AAATTA
1 AAATTA
36808367 GGAAAGTACC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAAGACCCTCGACCTATA
Found at i:36808360 original size:81 final size:81
Alignment explanation
Indices: 36808205--36808365 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
36808195 TATAAAGTTA
*** * * *
36808205 CCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGTTTTGTAAAATTATTTAAATACCC
1 CCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGACCTATAAAATTATTGAAAGACCC
* *
36808270 CTAGTTTGTAAAATTG
66 CGAGCTTGTAAAATTG
* * * *
36808286 CCAAAATGCCCTTGATTTGTGAAATTACTAAAATA-CCCTCGACCTATAAAATTATTGAAAGACC
1 CCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-GACCTATAAAATTATTGAAAGACC
36808350 CTCGA-CTTGTAAAATT
65 C-CGAGCTTGTAAAATT
36808366 AGGAAAGTAC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 4 0.06
81 60 0.91
82 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
CCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGACCTATAAAATTATTGAAAGACCC
CGAGCTTGTAAAATTG
Found at i:36808377 original size:27 final size:28
Alignment explanation
Indices: 36808319--36808378 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
36808309 ATTACTAAAA
*
36808319 TACCCTCGACCTATAAAATTATTGAAAG
1 TACCCTCGACCTATAAAATTATGGAAAG
* *
36808347 -ACCCTCGACTTGTAAAATTA-GGAAAG
1 TACCCTCGACCTATAAAATTATGGAAAG
36808373 TACCCT
1 TACCCT
36808379 TGATTTACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (28 bp):
TACCCTCGACCTATAAAATTATGGAAAG
Found at i:36808453 original size:27 final size:27
Alignment explanation
Indices: 36808416--36808745 Score: 365
Period size: 27 Copynumber: 12.3 Consensus size: 27
36808406 CGATTTACAA
* * *
36808416 AATTACTGAAACACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36808443 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36808470 AATAACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36808497 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36808524 AATTACCGAAATACCCCTATAAGATAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36808551 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36808578 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36808605 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36808632 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36808659 AATTACCGAAATACCCTTATAGGATAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36808686 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36808713 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
36808739 AATTACC
1 AATTACC
36808746 ATTTTGCCCC
Statistics
Matches: 252, Mismatches: 51, Indels: 1
0.83 0.17 0.00
Matches are distributed among these distances:
26 16 0.06
27 236 0.94
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:36809215 original size:22 final size:22
Alignment explanation
Indices: 36809190--36809236 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36809180 GGCTTTGTAT
36809190 CAACCT-ACATATGGCTCTGTGC
1 CAACCTGA-ATATGGCTCTGTGC
* *
36809212 CAACCTGATTATGGCTGTGTGC
1 CAACCTGAATATGGCTCTGTGC
36809234 CAA
1 CAA
36809237 ACGTATTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (22 bp):
CAACCTGAATATGGCTCTGTGC
Found at i:36809425 original size:27 final size:27
Alignment explanation
Indices: 36809395--36809496 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
36809385 ATTCTGTTAA
* *
36809395 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
36809422 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
36809449 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
36809476 GTGACTCTGCCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
36809497 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 53 0.80
28 6 0.09
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:36809664 original size:6 final size:6
Alignment explanation
Indices: 36809633--36809726 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
36809623 TTGCATTCAC
* *
36809633 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
36809682 -TCACCTG ATTCTA ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
36809727 AATGTTTCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36809668 original size:31 final size:31
Alignment explanation
Indices: 36809633--36809705 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
36809623 TTGCATTCAC
* * *
36809633 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
*
36809664 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
*
36809695 ATTCTAATTCT
1 ATTCTGATTCT
36809706 CATTTTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:36811714 original size:27 final size:27
Alignment explanation
Indices: 36811684--36812023 Score: 430
Period size: 27 Copynumber: 12.6 Consensus size: 27
36811674 TTAGTTTACC
36811684 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
36811711 AAATT-GTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
36811737 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
36811764 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36811791 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
36811818 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36811845 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36811872 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36811899 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36811926 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
36811953 AAATTATTAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36811980 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36812007 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
36812024 TTGACCTATA
Statistics
Matches: 262, Mismatches: 50, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 22 0.08
27 240 0.92
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36811800 original size:54 final size:54
Alignment explanation
Indices: 36811684--36812023 Score: 486
Period size: 54 Copynumber: 6.3 Consensus size: 54
36811674 TTAGTTTACC
**
36811684 AAATTACCAAAATACCCCTGGTTTGTAAAATT-GTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
36811737 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
36811791 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
36811845 AAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
36811899 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACTCC-TGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC-CCTTGGTTTATA
** * * * * *
36811953 AAATTATTAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
36812007 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
36812024 TTGACCTATA
Statistics
Matches: 260, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
53 34 0.13
54 224 0.86
55 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:36812024 original size:27 final size:27
Alignment explanation
Indices: 36811684--36812078 Score: 427
Period size: 27 Copynumber: 14.7 Consensus size: 27
36811674 TTAGTTTACC
*
36811684 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** *
36811711 AAATT-GTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36811737 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36811764 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36811791 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
36811818 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
36811845 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
* * *
36811872 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36811899 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
36811926 AAATTACCAAAATACTCC-TGGTTTGTA
1 AAATTACCAAAATAC-CCTTGGTTTGTA
** * * *
36811953 AAATTATTAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36811980 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* *** *
36812007 AAATTACTAAAATACCCTTGACCTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
36812034 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36812061 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
36812079 GGATTTACAG
Statistics
Matches: 306, Mismatches: 57, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 27 0.09
27 274 0.90
28 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:36812130 original size:27 final size:27
Alignment explanation
Indices: 36811684--36812132 Score: 272
Period size: 27 Copynumber: 16.7 Consensus size: 27
36811674 TTAGTTTACC
* * *
36811684 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* * *
36811711 AAATT-GTAAAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* * *
36811737 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* * *
36811764 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
36811791 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* * * *
36811818 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * *
36811845 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
*
36811872 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACTAAAATACCC-TCGATTTATA
* *
36811899 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* * *
36811926 AAATTACCAAAATACTCCT-GGTTTGTA
1 AAATTACTAAAATAC-CCTCGATTTATA
* *
36811953 AAATTATTAAAATACCC-CTAGTTTATA
1 AAATTACTAAAATACCCTCGA-TTTATA
* * * *
36811980 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACTAAAATACCCTCGATTTATA
* **
36812007 AAATTACTAAAATACCCTTGACCTATA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
36812034 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* * * *
36812061 AAATTACCAAAGTACCCTGGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* ** *
36812088 GAATTATCGT--TTTACCCTCGATTTACA
1 AAATTA-C-TAAAATACCCTCGATTTATA
*
36812115 AAATTACTGAAATACCCT
1 AAATTACTAAAATACCCT
36812133 TGTAGGGTAG
Statistics
Matches: 334, Mismatches: 68, Indels: 40
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.00
26 28 0.08
27 297 0.89
28 7 0.02
29 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:36812153 original size:27 final size:27
Alignment explanation
Indices: 36812116--36812444 Score: 394
Period size: 27 Copynumber: 12.3 Consensus size: 27
36812106 CGATTTACAA
* *
36812116 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36812143 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36812170 AATAACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36812197 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
36812224 AATTATCGAAATACCCCTATATGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36812251 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36812278 AATTACCGAAATACCCCTATAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36812305 AATTATCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36812332 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36812359 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36812386 AATTA-CTAAATTA-CCCTGTAGGGTGG
1 AATTACCGAAA-TACCCCTGTAGGGTAG
* * * *
36812412 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
36812438 AATTACC
1 AATTACC
36812445 ATTTTGCCCC
Statistics
Matches: 259, Mismatches: 41, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 38 0.15
27 221 0.85
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Done.