Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 124 of 141
Found at i:36812914 original size:22 final size:22
Alignment explanation
Indices: 36812889--36812935 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36812879 GGCTTTGTAT
36812889 CAACCT-ACATATGGCTCTGTGC
1 CAACCTGA-ATATGGCTCTGTGC
* *
36812911 CAACCTGATTATGGCTGTGTGC
1 CAACCTGAATATGGCTCTGTGC
36812933 CAA
1 CAA
36812936 ATGTATTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (22 bp):
CAACCTGAATATGGCTCTGTGC
Found at i:36813195 original size:27 final size:26
Alignment explanation
Indices: 36813094--36813195 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
36813084 ATTCTGTTAA
* * *
36813094 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
* *
36813121 GTGGCTATGCCATAAATATCTGTTCTG
1 GTGGCTCTGCCA-CAATATCTGTTCTG
*
36813148 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
*
36813175 GTGACTCTGCCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
36813196 ATAACTGAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.14
27 49 0.77
28 6 0.09
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:36813371 original size:6 final size:6
Alignment explanation
Indices: 36813360--36813425 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
36813350 TTACCTGGTA
* * *
36813360 CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTAATT CTGATT CTCATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
*
36813409 TTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
36813426 AATGTTTCTT
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 40 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:36813377 original size:31 final size:31
Alignment explanation
Indices: 36813332--36813404 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
36813322 TTGCATTCAC
* * * * *
36813332 ATTCTGCTTTTGATTCTGTTACCTGGTACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
*
36813363 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
36813394 ATTCTGATTCT
1 ATTCTGATTCT
36813405 CATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:36814614 original size:42 final size:43
Alignment explanation
Indices: 36814552--36814666 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
36814542 TTAGGGTTAC
*
36814552 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATTGGCATCAATA
** * * * *
36814594 TGAGATTTTGTGTAAAACCATAGCTGGGCTATTGTCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATTGGCATCAATA
* *
36814637 CGAGATTACATGTAAGACCATATCTGGGAT
1 TGAGATTACGTGTAAGACCATATCTGGGAT
36814667 CTGACATTGG
Statistics
Matches: 58, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (43 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATTGGCATCAATA
Found at i:36823100 original size:34 final size:35
Alignment explanation
Indices: 36823047--36823115 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
36823037 AAGGCCATAT
*
36823047 CAGTAGCAATATCAGTGT-GGGCCTTAGCCCATTA
1 CAGTAGCAATAACAGTGTGGGGCCTTAGCCCATTA
* *
36823081 CAGTAGTAATAACATTGTGGGGGCCTTAGCCCATT
1 CAGTAGCAATAACAGTGT-GGGGCCTTAGCCCATT
36823116 TTAGTACAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 15 0.50
36 15 0.50
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (35 bp):
CAGTAGCAATAACAGTGTGGGGCCTTAGCCCATTA
Found at i:36828712 original size:13 final size:13
Alignment explanation
Indices: 36828694--36828718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36828684 TAATGGTATA
36828694 TTGAATCCATGAC
1 TTGAATCCATGAC
36828707 TTGAATCCATGA
1 TTGAATCCATGA
36828719 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:36829295 original size:27 final size:26
Alignment explanation
Indices: 36829265--36829440 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
36829255 AATTGTACAG
36829265 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
36829292 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
36829319 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
*
36829346 CACTAAGTGTACGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
*
36829373 GCACTAAGTGTGCGATTTGATTATGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
36829400 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
36829427 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
36829441 GACTCGATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 106 0.83
28 21 0.17
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:36829378 original size:82 final size:81
Alignment explanation
Indices: 36829264--36829419 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
36829254 AAATTGTACA
*
36829264 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTACGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
36829328 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36829345 GCACTAAGTGTACGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGT
1 GCACTAAGTGTACGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATATGTAGCACTAAGT
*
36829409 GTGCGAGTTGA
64 GTGCGAATTGA
36829420 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 16 0.24
82 50 0.75
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTACGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36829431 original size:82 final size:81
Alignment explanation
Indices: 36829260--36829437 Score: 216
Period size: 82 Copynumber: 2.2 Consensus size: 81
36829250 GATTAAATTG
*
36829260 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTACGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
36829325 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36829341 TGCGGCACTAAGTGTACGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTATG-TAGCAC
1 TACAGCACTAAGTGTACGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATATGAT-GCAC
* **
36829404 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
36829423 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
36829438 GCGGACTCGA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 19 0.23
82 62 0.77
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTACGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36838864 original size:30 final size:30
Alignment explanation
Indices: 36838830--36838890 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36838820 TCCTTAACTC
36838830 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36838860 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36838890 A
1 A
36838891 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36843766 original size:26 final size:27
Alignment explanation
Indices: 36843737--36843790 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36843727 TCACACAAGT
*
36843737 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
36843763 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
36843790 T
1 T
36843791 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:36843839 original size:27 final size:26
Alignment explanation
Indices: 36843809--36843905 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 26
36843799 TACCCCACAA
36843809 GGGTATCTCTGTAATTCTACCCTATAG
1 GGGTAT-TCTGTAATTCTACCCTATAG
* ** *
36843836 GGGTATTTCGGTGTTTCTACCCTATAA
1 GGGTA-TTCTGTAATTCTACCCTATAG
* * *
36843863 GGGTATTTTGGTAATTCTACCTTACAG
1 GGGTATTCT-GTAATTCTACCCTATAG
*
36843890 GGGTATTTTAGTAATT
1 GGGTATTCT-GTAATT
36843906 TTACAACTTA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 53 0.95
28 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTCTGTAATTCTACCCTATAG
Found at i:36845015 original size:33 final size:33
Alignment explanation
Indices: 36844969--36845061 Score: 90
Period size: 33 Copynumber: 3.0 Consensus size: 33
36844959 GTAATAGTCG
* * *
36844969 GGGCCTGAACCCTATTCAGTATCAATACAGTTT
1 GGGCCTTAGCCCTATTCAGTATCAATACAGTGT
*
36845002 GGGCCTTAGCCCTATACAG--T--A-ACAGTGT
1 GGGCCTTAGCCCTATTCAGTATCAATACAGTGT
*
36845030 GGGCCCTAG-CCTAATTCAGTATCAATACAGTG
1 GGGCCTTAGCCCT-ATTCAGTATCAATACAGTG
36845062 CAGTCATGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
27 3 0.06
28 19 0.40
29 1 0.02
30 1 0.02
31 1 0.02
32 1 0.02
33 22 0.46
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
GGGCCTTAGCCCTATTCAGTATCAATACAGTGT
Found at i:36848749 original size:40 final size:40
Alignment explanation
Indices: 36848655--36848799 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
36848645 TACTCGAATG
* *
36848655 ATATCCGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
* * *
36848696 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
36848736 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
36848776 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36848800 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 62 0.69
41 28 0.31
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:36850150 original size:184 final size:184
Alignment explanation
Indices: 36849928--36850296 Score: 738
Period size: 184 Copynumber: 2.0 Consensus size: 184
36849918 TAACATGGGA
36849928 GACTTTGACTAATAAACTGTACTAATTGGCCAAACCAAAAATTCTAGAAAAAAATATGTAGATGC
1 GACTTTGACTAATAAACTGTACTAATTGGCCAAACCAAAAATTCTAGAAAAAAATATGTAGATGC
36849993 ATATATGAGTCTAGTTTCAGGGAAAAATCACGAAGCTGATTTTCGAGTTGTGAAACTGAAGATAT
66 ATATATGAGTCTAGTTTCAGGGAAAAATCACGAAGCTGATTTTCGAGTTGTGAAACTGAAGATAT
36850058 GATTTTTAAGGTGACAGTGACGCAGTTAGCCAGCTTGCCTGGAAAATTTAAAAT
131 GATTTTTAAGGTGACAGTGACGCAGTTAGCCAGCTTGCCTGGAAAATTTAAAAT
36850112 GACTTTGACTAATAAACTGTACTAATTGGCCAAACCAAAAATTCTAGAAAAAAATATGTAGATGC
1 GACTTTGACTAATAAACTGTACTAATTGGCCAAACCAAAAATTCTAGAAAAAAATATGTAGATGC
36850177 ATATATGAGTCTAGTTTCAGGGAAAAATCACGAAGCTGATTTTCGAGTTGTGAAACTGAAGATAT
66 ATATATGAGTCTAGTTTCAGGGAAAAATCACGAAGCTGATTTTCGAGTTGTGAAACTGAAGATAT
36850242 GATTTTTAAGGTGACAGTGACGCAGTTAGCCAGCTTGCCTGGAAAATTTAAAAT
131 GATTTTTAAGGTGACAGTGACGCAGTTAGCCAGCTTGCCTGGAAAATTTAAAAT
36850296 G
1 G
36850297 GATTGTGCAA
Statistics
Matches: 185, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 185 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (184 bp):
GACTTTGACTAATAAACTGTACTAATTGGCCAAACCAAAAATTCTAGAAAAAAATATGTAGATGC
ATATATGAGTCTAGTTTCAGGGAAAAATCACGAAGCTGATTTTCGAGTTGTGAAACTGAAGATAT
GATTTTTAAGGTGACAGTGACGCAGTTAGCCAGCTTGCCTGGAAAATTTAAAAT
Found at i:36851868 original size:27 final size:27
Alignment explanation
Indices: 36851838--36851891 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36851828 TCATACAACC
* *
36851838 CACGTAATAGTAATTTAACATTCAATT
1 CACGTAACAATAATTTAACATTCAATT
**
36851865 CACGTAACAATAATTTGCCATTCAATT
1 CACGTAACAATAATTTAACATTCAATT
36851892 TCACATTACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (27 bp):
CACGTAACAATAATTTAACATTCAATT
Found at i:36853133 original size:20 final size:20
Alignment explanation
Indices: 36853108--36853152 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36853098 AGGGACTAAA
* *
36853108 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
36853128 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
36853148 ATGAA
1 ATGAA
36853153 TACATGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:36855865 original size:21 final size:24
Alignment explanation
Indices: 36855820--36855875 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 24
36855810 AGCCAAATGG
36855820 ATTGGTATGACTTTAGTACATGAA
1 ATTGGTATGACTTTAGTACATGAA
*
36855844 ATTGGTATG-CTTT-G-ATATGAA
1 ATTGGTATGACTTTAGTACATGAA
36855865 ATTGAGTATGA
1 ATTG-GTATGA
36855876 AATGGATTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.34
22 6 0.21
23 4 0.14
24 9 0.31
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.39
Consensus pattern (24 bp):
ATTGGTATGACTTTAGTACATGAA
Found at i:36857804 original size:32 final size:32
Alignment explanation
Indices: 36857763--36857841 Score: 113
Period size: 32 Copynumber: 2.5 Consensus size: 32
36857753 ACAGTCGCAA
* * * *
36857763 TTGGGCCTAGCCCATCTTAGAATCAATATTAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
36857795 TTGGGCCTAGCCCATATCAGAACCAGTATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
36857827 TTGGGCCTAGCCCAT
1 TTGGGCCTAGCCCAT
36857842 TTCAATATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:36857813 original size:26 final size:26
Alignment explanation
Indices: 36857784--36857851 Score: 64
Period size: 32 Copynumber: 2.4 Consensus size: 26
36857774 CCATCTTAGA
*
36857784 ATCAATATTAGTTGGGCCTAGCCCAT
1 ATCAATATCAGTTGGGCCTAGCCCAT
36857810 ATCAGAACCAGTATCAGTTGGGCCTAGCCCAT
1 ATC---A--A-TATCAGTTGGGCCTAGCCCAT
*
36857842 TTCAATATCA
1 ATCAATATCA
36857852 AACCCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
26 8 0.24
27 1 0.03
29 2 0.06
31 1 0.03
32 22 0.65
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAGCCCAT
Found at i:36860257 original size:47 final size:47
Alignment explanation
Indices: 36860179--36861764 Score: 2782
Period size: 47 Copynumber: 33.6 Consensus size: 47
36860169 CCCTTCGGGA
* * * * * *
36860179 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36860226 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860273 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860367 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860414 CTTACCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860463 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860510 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860557 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860604 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36860698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36860745 CTTATCACATATATACACTTTCACATTCATCACATCTGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36860792 CTTATCACATATATTCAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860839 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860886 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860933 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36860980 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861027 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861074 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861121 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861168 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861215 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861262 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861309 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861356 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861403 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36861450 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36861497 CTTATCACATATATCTACACTTTCACATTCATCAC--CGGCCATTAGGC
1 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
36861544 CTTATCACATATATATACACTTTCACATTCATCACATC-GCCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCC-ATTAGGC
36861593 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36861640 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36861689 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36861736 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
36861765 TATTCAAATA
Statistics
Matches: 1498, Mismatches: 27, Indels: 26
0.97 0.02 0.02
Matches are distributed among these distances:
47 1341 0.90
48 6 0.00
49 151 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36863274 original size:13 final size:13
Alignment explanation
Indices: 36863256--36863280 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36863246 TACTAAATTT
36863256 TCATGGATTCAAA
1 TCATGGATTCAAA
36863269 TCATGGATTCAA
1 TCATGGATTCAA
36863281 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:36864988 original size:16 final size:16
Alignment explanation
Indices: 36864941--36864980 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
36864931 ATTTCAATCC
36864941 AAAAATTATATTTTTG
1 AAAAATTATATTTTTG
36864957 AAAAATTATATTTTTG
1 AAAAATTATATTTTTG
36864973 AAAAATTA
1 AAAAATTA
36864981 CAGTTTTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (16 bp):
AAAAATTATATTTTTG
Found at i:36873558 original size:36 final size:33
Alignment explanation
Indices: 36873493--36873559 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 33
36873483 GTGAATGAAG
*
36873493 TGAGTGAACAAGAGAGAGAGCTTAAACAAGGAA
1 TGAGTGAACAAGAGAGAGAGCTAAAACAAGGAA
* *
36873526 TGAGTGAAGAAGAAGAGAGTGCTCAAACACAAGG
1 TGAGTGAACAAG-AGAGAGAGCT-AAA-ACAAGG
36873560 GAGGAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 11 0.39
34 9 0.32
35 2 0.07
36 6 0.21
ACGTcount: A:0.46, C:0.10, G:0.31, T:0.12
Consensus pattern (33 bp):
TGAGTGAACAAGAGAGAGAGCTAAAACAAGGAA
Found at i:36888688 original size:12 final size:12
Alignment explanation
Indices: 36888671--36888707 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
36888661 TCGTATTATT
36888671 ATCGAGAACTTC
1 ATCGAGAACTTC
36888683 ATCGAGAACTTC
1 ATCGAGAACTTC
36888695 ATC-AGAAACTTC
1 ATCGAG-AACTTC
36888707 A
1 A
36888708 AAATCATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (12 bp):
ATCGAGAACTTC
Found at i:36898311 original size:25 final size:25
Alignment explanation
Indices: 36898267--36898317 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
36898257 TACAATCTAT
36898267 CTATAGCAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGTATATACTAC
*
36898292 CTATAGCAGTTTCAAG-ATATACTAC
1 CTATAGCAGTCTC-AGTATATACTAC
36898317 C
1 C
36898318 AAAAACAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (25 bp):
CTATAGCAGTCTCAGTATATACTAC
Found at i:36898326 original size:25 final size:25
Alignment explanation
Indices: 36898283--36898330 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36898273 CAGTCTCAGT
* * *
36898283 ATATACTACCTATAGCAGTTTCAAG
1 ATATACTACCAAAAACAGTTTCAAG
36898308 ATATACTACCAAAAACAGTTTCA
1 ATATACTACCAAAAACAGTTTCA
36898331 GTTTAGACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (25 bp):
ATATACTACCAAAAACAGTTTCAAG
Found at i:36911500 original size:37 final size:37
Alignment explanation
Indices: 36911393--36911501 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
36911383 AGCTCAGACG
* * *
36911393 AAATCTCCACATGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
* *
36911430 AAATCTCCATATGTAGTCATCGGGTCTTGCCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
* *
36911467 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
36911502 ATATATTTCC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
Found at i:36911772 original size:47 final size:47
Alignment explanation
Indices: 36911710--36911873 Score: 265
Period size: 47 Copynumber: 3.5 Consensus size: 47
36911700 ACACGTTTCG
* * *
36911710 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
36911757 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
36911804 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
36911851 CATTGGCCATTCGACCTTATCAC
1 CATTGGCCATTCGGCCTTATCAC
36911874 GCATATATAT
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:36912093 original size:47 final size:47
Alignment explanation
Indices: 36912031--36912127 Score: 140
Period size: 47 Copynumber: 2.1 Consensus size: 47
36912021 ACACGTTTCG
* ** *
36912031 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATCCATCA
* *
36912078 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATCCATCA
36912125 CAT
1 CAT
36912128 AAAATCCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATCCATCA
Found at i:36914445 original size:85 final size:85
Alignment explanation
Indices: 36914316--36915174 Score: 1709
Period size: 85 Copynumber: 10.1 Consensus size: 85
36914306 TATTTTATTG
*
36914316 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914381 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914401 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914466 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914486 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914551 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914571 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914636 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914656 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914721 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914741 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914806 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914826 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914891 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914911 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36914976 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36914996 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36915061 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36915081 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36915146 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36915166 CCCATGCTC
1 CCCATGCTC
36915175 ATGGCCGGCC
Statistics
Matches: 773, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 773 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:36929768 original size:22 final size:21
Alignment explanation
Indices: 36929739--36929786 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
36929729 AAGCATGAAC
*
36929739 TGAA-ATTTTAATGATTTAGTG
1 TGAACATTTTAATGAATT-GTG
* *
36929760 TGAACATTTTTATTAATTGTG
1 TGAACATTTTAATGAATTGTG
36929781 TGAACA
1 TGAACA
36929787 CATAGGTGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (21 bp):
TGAACATTTTAATGAATTGTG
Found at i:36934590 original size:50 final size:50
Alignment explanation
Indices: 36934527--36934714 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
36934517 TATCATTCGA
* * *
36934527 TACACGTACTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTTCCGG
*
36934577 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAAGC-TTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-AAA-CTTTCCGG
* * * * * *
36934628 TACACATAGTAGCCTGCACATAGTGCTACACATGTGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA--AACTTTCCGG
* * *
36934679 TACAAGTAGTAGCCTACACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
36934715 TGTATAGGCA
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
50 36 0.31
51 77 0.66
52 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTTCCGG
Found at i:36942073 original size:22 final size:22
Alignment explanation
Indices: 36942047--36942092 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36942037 ATTATGTGTA
36942047 TTAATTCATAATAT-AA-TTAATT
1 TTAATT-ATAAT-TCAATTTAATT
36942069 TTAATTATAATTCAATTTAATT
1 TTAATTATAATTCAATTTAATT
36942091 TT
1 TT
36942093 GTTTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 7 0.32
22 14 0.64
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAATTATAATTCAATTTAATT
Found at i:36942077 original size:16 final size:16
Alignment explanation
Indices: 36942058--36942090 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36942048 TAATTCATAA
36942058 TATAATT-AATTTTAAT
1 TATAATTCAA-TTTAAT
36942074 TATAATTCAATTTAAT
1 TATAATTCAATTTAAT
36942090 T
1 T
36942091 TTGTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TATAATTCAATTTAAT
Found at i:36958363 original size:30 final size:30
Alignment explanation
Indices: 36958305--36958360 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
36958295 TCGTTTTTAT
* *
36958305 TCTCAATCTCATTTTCAATTTTCTTTTCTA
1 TCTCAAACTCATCTTCAATTTTCTTTTCTA
*
36958335 TCTCAAACTCATCTTC-TTTTTCTTTT
1 TCTCAAACTCATCTTCAATTTTCTTTT
36958361 TCTCACTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.18, C:0.25, G:0.00, T:0.57
Consensus pattern (30 bp):
TCTCAAACTCATCTTCAATTTTCTTTTCTA
Found at i:36959379 original size:11 final size:11
Alignment explanation
Indices: 36959363--36959401 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
36959353 AATACAAACT
36959363 TTTTTTTTGAA
1 TTTTTTTTGAA
36959374 TTTTTTTTGAA
1 TTTTTTTTGAA
36959385 TTTTTTTTG-A
1 TTTTTTTTGAA
36959395 TTTTTTT
1 TTTTTTT
36959402 ACAATACCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 8 0.29
11 20 0.71
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:36963391 original size:30 final size:30
Alignment explanation
Indices: 36963325--36963513 Score: 154
Period size: 30 Copynumber: 6.4 Consensus size: 30
36963315 GCTGTCAATT
*
36963325 TATGAAAAGGGATGGTGACGACCATC-AAC
1 TATGAAAAGGGATAGTGACGACCATCAAAC
*
36963354 TATGAAAAGGGATAGTGACGACTATCAAAC
1 TATGAAAAGGGATAGTGACGACCATCAAAC
* * ** * *
36963384 CATGAAAAGGAATAGCT-TTG-CCTATTAAAT
1 TATGAAAAGGGATAG-TGACGACC-ATCAAAC
* * * *
36963414 TATGAAAAGGGATAGCT-TCAACTATCAAAT
1 TATGAAAAGGGATAG-TGACGACCATCAAAC
** *
36963444 TATGAAAAGGGACGGTGACGGCCATC-AAC
1 TATGAAAAGGGATAGTGACGACCATCAAAC
* * *
36963473 AATGAAAAGGGATGGTGACGACCATCAAAA
1 TATGAAAAGGGATAGTGACGACCATCAAAC
36963503 TATGAAAAGGG
1 TATGAAAAGGG
36963514 GTAGCTTCGG
Statistics
Matches: 127, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
29 51 0.40
30 74 0.58
31 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (30 bp):
TATGAAAAGGGATAGTGACGACCATCAAAC
Found at i:36963508 original size:119 final size:119
Alignment explanation
Indices: 36963296--36963545 Score: 338
Period size: 119 Copynumber: 2.1 Consensus size: 119
36963286 TCATCGGCCA
** * * * *
36963296 ATGAAAAGGGATAGCTTCGGCTGTCAATTTATGAAAAGGGATGGTGACGACCATCAACTATGAAA
1 ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGGACGGTGACGACCATCAACAATGAAA
* * * *
36963361 AGGGATAGTGACGACTATCAAACCATGAAAAGGAATAGCTTTGCCTATTAAATT
66 AGGGATAGTGACGACCATCAAAACATGAAAAGGAATAGCTTCGCCTATTAAACT
*
36963415 ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGGACGGTGACGGCCATCAACAATGAAA
1 ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGGACGGTGACGACCATCAACAATGAAA
* * ** * * *
36963480 AGGGATGGTGACGACCATCAAAATATGAAAAGGGGTAGCTTCGGCTATTGAGCT
66 AGGGATAGTGACGACCATCAAAACATGAAAAGGAATAGCTTCGCCTATTAAACT
36963534 ATGAAAAGGGAT
1 ATGAAAAGGGAT
36963546 GGTGACAATC
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
119 113 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (119 bp):
ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGGACGGTGACGACCATCAACAATGAAA
AGGGATAGTGACGACCATCAAAACATGAAAAGGAATAGCTTCGCCTATTAAACT
Found at i:36965448 original size:40 final size:40
Alignment explanation
Indices: 36965403--36965589 Score: 320
Period size: 40 Copynumber: 4.7 Consensus size: 40
36965393 GCAAACACAT
* *
36965403 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
36965443 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
** *
36965483 TTGCCTTCGGGTCACAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36965523 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36965563 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
36965590 ATCCAATGCT
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:36972737 original size:15 final size:15
Alignment explanation
Indices: 36972717--36972746 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36972707 AACTAGCATA
36972717 ATCATATAACTTATT
1 ATCATATAACTTATT
36972732 ATCATATAACTTATT
1 ATCATATAACTTATT
36972747 TATTACACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
ATCATATAACTTATT
Found at i:37005718 original size:22 final size:22
Alignment explanation
Indices: 37005687--37005745 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
37005677 ACATGGCCAG
* *
37005687 TGTCACGACACCCTATTGCCTA
1 TGTCATGACACCCTAGTGCCTA
*
37005709 TGTCATGACACCCTAGTGCCTG
1 TGTCATGACACCCTAGTGCCTA
37005731 TGTCATGACACCCTA
1 TGTCATGACACCCTA
37005746 AGAGCAGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.22, C:0.34, G:0.17, T:0.27
Consensus pattern (22 bp):
TGTCATGACACCCTAGTGCCTA
Found at i:37008180 original size:20 final size:20
Alignment explanation
Indices: 37008155--37008192 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37008145 GCTCTTTTGT
*
37008155 ACATATATTTTCTTTCAAGC
1 ACATATATTTTATTTCAAGC
*
37008175 ACATATGTTTTATTTCAA
1 ACATATATTTTATTTCAA
37008193 CATAAGCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.47
Consensus pattern (20 bp):
ACATATATTTTATTTCAAGC
Found at i:37011471 original size:50 final size:50
Alignment explanation
Indices: 37011335--37011520 Score: 133
Period size: 50 Copynumber: 3.6 Consensus size: 50
37011325 AGATCCCATG
* ** ** *
37011335 TAAGACCATGTCTGGGACATGTCATTGGCATTATTGAGTTCATGAGAGGTCCAACG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCA---AG---ATGAGAGGTCCCTCA
* * * *
37011391 TAAGACCATGTCTAGTACATAGCGTTGGCACCAAGATGAGAGGTCCCTCA
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCTCA
* * * * *
37011441 TAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGA--ACTCTCA
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCTCA
* *
37011489 TGTAAGACCATATCTGGGATATGGCATTGGCA
1 --TAAGACCATGTCTGGGACATGGCATTGGCA
37011521 GTACAGGAAA
Statistics
Matches: 106, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
48 5 0.05
50 73 0.69
53 2 0.02
56 26 0.25
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCTCA
Found at i:37017681 original size:11 final size:11
Alignment explanation
Indices: 37017665--37017694 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
37017655 TGAGTAATTT
37017665 ATTATTTTAAA
1 ATTATTTTAAA
37017676 ATTATTTTAAA
1 ATTATTTTAAA
*
37017687 ATTCTTTT
1 ATTATTTT
37017695 TCGAGCCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
ATTATTTTAAA
Found at i:37017733 original size:15 final size:16
Alignment explanation
Indices: 37017706--37017735 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37017696 CGAGCCAAAT
37017706 TAATTATTTTCACTAA
1 TAATTATTTTCACTAA
37017722 TAATTA-TTTCACTA
1 TAATTATTTTCACTA
37017736 CTTTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTATTTTCACTAA
Found at i:37025715 original size:25 final size:25
Alignment explanation
Indices: 37025673--37025726 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
37025663 TTTTCACAAA
*
37025673 AATTTAATTAATATAAAATATTA-AT
1 AATTTAATAAATATAAAA-ATTAGAT
37025698 AATTTAATAAAT-TGAAAAATTAGAT
1 AATTTAATAAATAT-AAAAATTAGAT
37025723 AATT
1 AATT
37025727 AAATTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
AATTTAATAAATATAAAAATTAGAT
Found at i:37045675 original size:17 final size:18
Alignment explanation
Indices: 37045644--37045677 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37045634 ATTTTGTAAT
37045644 AACTGTCTAAACCCAAAA
1 AACTGTCTAAACCCAAAA
*
37045662 AACT-TCTAACCCCAAA
1 AACTGTCTAAACCCAAA
37045678 TACATTTCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.32, G:0.03, T:0.18
Consensus pattern (18 bp):
AACTGTCTAAACCCAAAA
Found at i:37048284 original size:85 final size:85
Alignment explanation
Indices: 37048192--37048361 Score: 261
Period size: 85 Copynumber: 2.0 Consensus size: 85
37048182 TAAAGGGCAA
* *
37048192 AATGGTCACTTAGAGGAGAGAGAAATCTAGAA-AGCAATGATGATGTTGGTGATATTTTAGATTA
1 AATGGTCACTTAGAGGAGAGAGAAATCTAGAAGA-CAATGATGATGTTGGAGATATGTTAGATTA
* *
37048256 ATTAATTAAATAATTATTAGT
65 ATTAAATAAATAAATATTAGT
* * *
37048277 AATGGTCATTTAGAGGAGGGAGAAATCTAGAAGATAATGATGATGTTGGAGATATGTTAGATTAA
1 AATGGTCACTTAGAGGAGAGAGAAATCTAGAAGACAATGATGATGTTGGAGATATGTTAGATTAA
37048342 TTAAATAAATAAATATTAGT
66 TTAAATAAATAAATATTAGT
37048362 TTATTAATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 76 0.99
86 1 0.01
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (85 bp):
AATGGTCACTTAGAGGAGAGAGAAATCTAGAAGACAATGATGATGTTGGAGATATGTTAGATTAA
TTAAATAAATAAATATTAGT
Found at i:37057021 original size:10 final size:11
Alignment explanation
Indices: 37056995--37057020 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37056985 AAGAGGTATG
37056995 AAAAACATAAA
1 AAAAACATAAA
37057006 AAAAACATAAA
1 AAAAACATAAA
37057017 AAAA
1 AAAA
37057021 CTAAGTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAACATAAA
Found at i:37058819 original size:50 final size:49
Alignment explanation
Indices: 37058757--37058884 Score: 139
Period size: 49 Copynumber: 2.6 Consensus size: 49
37058747 GTGGAAACGA
* * **
37058757 CACCACTAATTTGCAGATAAACTACCACTGATAATATTTTGTGCACAAGC
1 CACCACTAATTTGCAGATAAACTACCACTGA-AACACTTCATGCACAAGC
* * * * *
37058807 CACCACTGATTTGCGGATATACTACCATTGAAACACTTCATGGACAAGC
1 CACCACTAATTTGCAGATAAACTACCACTGAAACACTTCATGCACAAGC
* * *
37058856 CACCATTTATTTGCAGATAAACTGCCACT
1 CACCACTAATTTGCAGATAAACTACCACT
37058885 TACTTCCACC
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
49 36 0.57
50 27 0.43
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (49 bp):
CACCACTAATTTGCAGATAAACTACCACTGAAACACTTCATGCACAAGC
Found at i:37064203 original size:51 final size:52
Alignment explanation
Indices: 37064145--37064280 Score: 197
Period size: 50 Copynumber: 2.7 Consensus size: 52
37064135 TCGGTTCACA
*
37064145 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
* * *
37064196 TAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
**
37064246 TAGTAGCCTGCACATAGTACTACACACATGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
37064281 CACTATCACT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
49 4 0.05
50 39 0.52
51 32 0.43
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
Found at i:37064265 original size:50 final size:50
Alignment explanation
Indices: 37064136--37064271 Score: 193
Period size: 51 Copynumber: 2.7 Consensus size: 50
37064126 CATTGATGTT
* * *
37064136 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATC
* * *
37064187 TGATACACGTAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TC
37064237 CGGTACACGTAGTAGCCTGCACATAGTACTACACA
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACA
37064272 CATGACCATC
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
49 4 0.05
50 35 0.46
51 37 0.49
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGCGACCATACCATC
Found at i:37066283 original size:8 final size:8
Alignment explanation
Indices: 37066270--37066298 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
37066260 TATATATACT
37066270 AAATAATA
1 AAATAATA
37066278 AAATAATA
1 AAATAATA
37066286 AAATAATA
1 AAATAATA
37066294 AAATA
1 AAATA
37066299 TCATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:37066340 original size:35 final size:35
Alignment explanation
Indices: 37066301--37066418 Score: 87
Period size: 35 Copynumber: 3.1 Consensus size: 35
37066291 ATAAAATATC
37066301 ATTTAAAAATTAAATTAAAATATTAATAAACTAAT
1 ATTTAAAAATTAAATTAAAATATTAATAAACTAAT
* * * * *
37066336 ATTTATTTATTTAATT-AATCTAACATATCTCCAA-CATCATCAT
1 ATTTA---A--AAATTAAAT-TAAAATAT-T--AATAAAC-TAAT
37066379 ATTTAAAAATTAAATTAAAATATTAATAAACTAAT
1 ATTTAAAAATTAAATTAAAATATTAATAAACTAAT
37066414 ATTTA
1 ATTTA
37066419 TTTATTTAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 24
0.64 0.11 0.25
Matches are distributed among these distances:
35 15 0.25
36 2 0.03
37 1 0.02
38 12 0.20
39 6 0.10
40 12 0.20
41 1 0.02
42 2 0.03
43 10 0.16
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (35 bp):
ATTTAAAAATTAAATTAAAATATTAATAAACTAAT
Found at i:37066389 original size:78 final size:78
Alignment explanation
Indices: 37066301--37066456 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
37066291 ATAAAATATC
*
37066301 ATTTAAAAATTAAATTAAAATATTAATAAACTAATATTTATTTATTTAATTAATCTAACATATCT
1 ATTTAAAAATTAAATTAAAATATTAATAAACTAATATTTATTTATTTAATTAATCTAAAATATCT
37066366 CCAACATCATCAT
66 CCAACATCATCAT
37066379 ATTTAAAAATTAAATTAAAATATTAATAAACTAATATTTATTTATTTAATTAATCTAAAATATCT
1 ATTTAAAAATTAAATTAAAATATTAATAAACTAATATTTATTTATTTAATTAATCTAAAATATCT
37066444 CCAACATCATCAT
66 CCAACATCATCAT
37066457 TATCTTCTAA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (78 bp):
ATTTAAAAATTAAATTAAAATATTAATAAACTAATATTTATTTATTTAATTAATCTAAAATATCT
CCAACATCATCAT
Found at i:37068648 original size:17 final size:17
Alignment explanation
Indices: 37068602--37068643 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
37068592 AAAAACTAAG
37068602 AGAAAATGAAAAAGAAA
1 AGAAAATGAAAAAGAAA
37068619 AGAAAATGAAAAAG-AA
1 AGAAAATGAAAAAGAAA
37068635 AG-AAATGAA
1 AGAAAATGAA
37068644 GAAAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.28
16 4 0.16
17 14 0.56
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (17 bp):
AGAAAATGAAAAAGAAA
Found at i:37075351 original size:101 final size:101
Alignment explanation
Indices: 37074838--37075327 Score: 901
Period size: 101 Copynumber: 4.8 Consensus size: 101
37074828 GATACCAGTT
* * * * * *
37074838 CACATAGTAGCCTGCGCATAGTACTAAACATGTGACC-ATCACTATCTGATACACGTAGTAGCCT
1 CACATAGTAGCATGCACATAGTACTACACATGCGACCTAT--CTTTCTGGTACACGTAGTAGCCT
37074902 GCACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
64 GCACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
37074940 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
1 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
37075005 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
66 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
37075041 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
1 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
37075106 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
66 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
37075142 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
1 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
37075207 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
66 ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
37075243 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
1 CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
37075308 ACATAGTACTACACACGTGA
66 ACATAGTACTACACACGTGA
37075328 CCATCACTTT
Statistics
Matches: 381, Mismatches: 6, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
101 346 0.91
102 33 0.09
103 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (101 bp):
CACATAGTAGCATGCACATAGTACTACACATGCGACCTATCTTTCTGGTACACGTAGTAGCCTGC
ACATAGTACTACACACGTGAGCAAAGCTATCCGGTA
Found at i:37078545 original size:51 final size:52
Alignment explanation
Indices: 37078487--37078677 Score: 205
Period size: 51 Copynumber: 3.8 Consensus size: 52
37078477 CCGGTTCACA
* * *
37078487 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATTC-GATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATTCTGGTACACG
* * * * *
37078538 TAGTAGCCTGCACATAGTACTACACACGTGATCA-AAGC-AATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATTCTGGTACACG
* * *
37078589 TAGTAGCCTGCACATAGTACTACACATGCGACC-T-A-TCATTCTGGTGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT-ATTCTGGTACACG
* *
37078639 TGGTAGCCTGCACATAGTACTACACACGTGGCCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
37078678 TTCACTTTCA
Statistics
Matches: 113, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
50 43 0.38
51 68 0.60
52 1 0.01
53 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATTCTGGTACACG
Found at i:37078664 original size:101 final size:102
Alignment explanation
Indices: 37078485--37078668 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
37078475 TACCGGTTCA
*
37078485 CATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATTCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGCCTGCA
37078550 CATAGTACTACACACGTGATCAAAGCAATCTGGTACG
66 CATAGTACTACACACGTGATCAAAGCAATCTGGTACG
* * * *
37078587 CATAGTAGCCTGCACATAGTACTACACATGCGACC-T-A-TCATTCTGGTGCACGTGGTAGCCTG
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATCACT-ATTC-GATACACGTAGTAGCCTG
37078649 CACATAGTACTACACACGTG
64 CACATAGTACTACACACGTG
37078669 GCCATCACTT
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
99 1 0.01
100 5 0.07
101 36 0.48
102 33 0.44
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCAAAGCAATCTGGTACG
Found at i:37078693 original size:101 final size:102
Alignment explanation
Indices: 37078480--37078703 Score: 233
Period size: 101 Copynumber: 2.2 Consensus size: 102
37078470 AATGATACCG
* *
37078480 GTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATTCGATACACGTAGTAGC
1 GTTCAGATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGC
* **
37078545 CTGCACATAGTACTACACACGTGATCAAAGCAATCTG
66 CTGCACATAGTACTACACACGTGACCAAAGCAATCAC
* * * * *
37078582 GTAC-GCATAGTAGCCTGCACATAGTACTACACATGCGACC-T-A-TCATTCTGGTGCACGTGGT
1 GTTCAG-ATAGTAGCCTACACATAGTACTACACATGCGACCATCACT-ATTC-GATACACGTAGT
* * **
37078643 AGCCTGCACATAGTACTACACACGTGGCCATCA-CTTTCAC
63 AGCCTGCACATAGTACTACACACGTGACCA-AAGCAATCAC
* *
37078683 TTTCAGATAGTGGCCTACACA
1 GTTCAGATAGTAGCCTACACA
37078704 CAGTCCATTC
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
99 1 0.01
100 5 0.05
101 56 0.57
102 37 0.37
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (102 bp):
GTTCAGATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATTCGATACACGTAGTAGC
CTGCACATAGTACTACACACGTGACCAAAGCAATCAC
Found at i:37081935 original size:199 final size:199
Alignment explanation
Indices: 37081603--37081985 Score: 606
Period size: 199 Copynumber: 1.9 Consensus size: 199
37081593 CTCAACCATA
* *
37081603 TGAGTCACACAATCGTGTTTCTATAACACCCCTAACCTGTATCCGTCGCCAGAATAGGGTTACGA
1 TGAGTCACACAATCGTGTTTCTATAACACCCCTAACCTATATCCGTCGCCAGAATAGGGTTACAA
*
37081668 AGCATTATCGTAAAATCGTAACATAAAAACATACATTTCCAAACATTGATATAAACAAAGCATAA
66 AGCATTATCGTAAAATCATAACATAAAAACATACATTTCCAAACATTGATATAAACAAAGCATAA
* *
37081733 TCCATTCATATACATGCAGATCATCCCTTTATCGAGCCCTCGAGACCTTAGAAATGTGTCCCAAA
131 TCCATTCATATACATGCAGATCATCCCTTCATCAAGCCCTCGAGACCTTAGAAATGTGTCCCAAA
37081798 TGTT
196 TGTT
* * *
37081802 TGAGTCACACGA-CTGTGTTTCTATAACACCCCTAACCTATATCTGTCGCCCGAATAGGGTTACA
1 TGAGTCACACAATC-GTGTTTCTATAACACCCCTAACCTATATCCGTCGCCAGAATAGGGTTACA
* * * * **
37081866 AAGCATTATTGTAAAATCATAACATGAAAACATGCATTTCCAAACATTGATATAAACATAGTTTA
65 AAGCATTATCGTAAAATCATAACATAAAAACATACATTTCCAAACATTGATATAAACAAAGCATA
* *
37081931 ATCCATTCATATACATGCAGATCGTCCCTTCATCAAGCCCTCGAGACTTTAGAAA
130 ATCCATTCATATACATGCAGATCATCCCTTCATCAAGCCCTCGAGACCTTAGAAA
37081986 CACTTTAGAA
Statistics
Matches: 167, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
198 1 0.01
199 166 0.99
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (199 bp):
TGAGTCACACAATCGTGTTTCTATAACACCCCTAACCTATATCCGTCGCCAGAATAGGGTTACAA
AGCATTATCGTAAAATCATAACATAAAAACATACATTTCCAAACATTGATATAAACAAAGCATAA
TCCATTCATATACATGCAGATCATCCCTTCATCAAGCCCTCGAGACCTTAGAAATGTGTCCCAAA
TGTT
Found at i:37085436 original size:23 final size:23
Alignment explanation
Indices: 37085410--37085472 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 23
37085400 CCATCAAATC
37085410 CTGTACAT-GTATGCTTACACGAG
1 CTGTA-ATCGTATGCTTACACGAG
*
37085433 CTGTGAATCGGTATGCTTACATGAG
1 CTGT-AATC-GTATGCTTACACGAG
37085458 CTGTAAATCGGTATG
1 CTGT-AATC-GTATG
37085473 TTCAGACGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 6 0.17
24 1 0.03
25 28 0.80
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (23 bp):
CTGTAATCGTATGCTTACACGAG
Found at i:37085446 original size:25 final size:25
Alignment explanation
Indices: 37085418--37085489 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
37085408 TCCTGTACAT
37085418 GTATGCTTACACGAGCTGTGAATCG
1 GTATGCTTACACGAGCTGTGAATCG
* *
37085443 GTATGCTTACATGAGCTGTAAATCG
1 GTATGCTTACACGAGCTGTGAATCG
* *
37085468 GTATG-TTCAGACGAGTTGTGAA
1 GTATGCTT-ACACGAGCTGTGAA
37085490 AATAGGCCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 2 0.05
25 38 0.95
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (25 bp):
GTATGCTTACACGAGCTGTGAATCG
Found at i:37089554 original size:47 final size:47
Alignment explanation
Indices: 37089485--37089579 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
37089475 TGAAAGAATT
*
37089485 CCCAGGTGATCCGCTCTCTTGGCACAATAAAAATCAATGTATTCAAC
1 CCCAGGTGATCCGCTCTCTTGGCACAATAAAAATCAACGTATTCAAC
* *
37089532 CCCAGGTGATCCGCTCTCTTGGCATAATAGAAATCAACGTATTCAAC
1 CCCAGGTGATCCGCTCTCTTGGCACAATAAAAATCAACGTATTCAAC
37089579 C
1 C
37089580 ATTAAAAACC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (47 bp):
CCCAGGTGATCCGCTCTCTTGGCACAATAAAAATCAACGTATTCAAC
Found at i:37095830 original size:21 final size:21
Alignment explanation
Indices: 37095773--37095842 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
37095763 CAGTGGCACG
*
37095773 TAAGAGCAATTCAGGGGTATCA
1 TAAGTGCAATTCAGGGGTA-CA
*
37095795 -AAGTACAA-T-AGGGGTACA
1 TAAGTGCAATTCAGGGGTACA
37095813 TAAGTGCAATTCAGGGGTAC-
1 TAAGTGCAATTCAGGGGTACA
37095833 TAAAGTGCAA
1 T-AAGTGCAA
37095843 CAAGGGCACG
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
18 2 0.05
19 14 0.34
20 3 0.07
21 22 0.54
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (21 bp):
TAAGTGCAATTCAGGGGTACA
Found at i:37095838 original size:40 final size:40
Alignment explanation
Indices: 37095723--37095865 Score: 162
Period size: 40 Copynumber: 3.5 Consensus size: 40
37095713 GAGTGTAAAT
* * *
37095723 AGGGGCACGTATGTGCAATTCAGGGTTACCAAAGTACAAAC
1 AGGGGCACGTAAGTGCAATTCAGGGGTACTAAAGTAC-AAC
* * *
37095764 AGTGGCACGTAAGAGCAATTCAGGGGTA-TCAAAGTACAAT
1 AGGGGCACGTAAGTGCAATTCAGGGGTACT-AAAGTACAAC
* * *
37095804 AGGGGTACATAAGTGCAATTCAGGGGTACTAAAGTGCAAC
1 AGGGGCACGTAAGTGCAATTCAGGGGTACTAAAGTACAAC
* *
37095844 AAGGGCACGTAAGTGCAGTTCA
1 AGGGGCACGTAAGTGCAATTCA
37095866 TAAGTATTGA
Statistics
Matches: 84, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
40 52 0.62
41 32 0.38
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (40 bp):
AGGGGCACGTAAGTGCAATTCAGGGGTACTAAAGTACAAC
Found at i:37095945 original size:41 final size:41
Alignment explanation
Indices: 37095723--37095954 Score: 168
Period size: 41 Copynumber: 5.7 Consensus size: 41
37095713 GAGTGTAAAT
* *
37095723 AGGGGCACGTATGTGCAATTC-AGGGTTACCAAAGTACAAAC
1 AGGGGCACGTAAGTGCAATTCAAGGG-TATCAAAGTACAAAC
* * * *
37095764 AGTGGCACGTAAGAGCAATTCAGGGGTATCAAAGTAC-AAT
1 AGGGGCACGTAAGTGCAATTCAAGGGTATCAAAGTACAAAC
* * * *
37095804 AGGGGTACATAAGTGCAATTCAGGGGTA-CTAAAGTGC-AAC
1 AGGGGCACGTAAGTGCAATTCAAGGGTATC-AAAGTACAAAC
* * * ** *
37095844 AAGGGCACGTAAGTGCAGTTCATA-AGTATTGAAGTATAAAC
1 AGGGGCACGTAAGTGCAATTCA-AGGGTATCAAAGTACAAAC
* * * ** *
37095885 AGGAGCACATAACTATAATTCAAGGGTATCGAAGTACAAAC
1 AGGGGCACGTAAGTGCAATTCAAGGGTATCAAAGTACAAAC
* * * *
37095926 AGGGGCATGTAAGTGTAATTTAGGGGTAT
1 AGGGGCACGTAAGTGCAATTCAAGGGTAT
37095955 AATTAAGTGT
Statistics
Matches: 146, Mismatches: 39, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
39 1 0.01
40 60 0.41
41 82 0.56
42 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (41 bp):
AGGGGCACGTAAGTGCAATTCAAGGGTATCAAAGTACAAAC
Found at i:37099052 original size:16 final size:17
Alignment explanation
Indices: 37099021--37099053 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37099011 TAATATTTTA
37099021 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
37099039 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
37099054 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:37099230 original size:34 final size:34
Alignment explanation
Indices: 37099154--37099217 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
37099144 TACTATACTT
37099154 TAATATAATATATAACTATTACTAATAAATAAAA
1 TAATATAATATATAACTATTACTAATAAATAAAA
* *
37099188 TAAAATAATATATAATTATTACTAA-AAATA
1 TAATATAATATATAACTATTACTAATAAATA
37099218 TAATCTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (34 bp):
TAATATAATATATAACTATTACTAATAAATAAAA
Found at i:37099517 original size:244 final size:246
Alignment explanation
Indices: 37099224--37099708 Score: 647
Period size: 244 Copynumber: 2.0 Consensus size: 246
37099214 AATATAATCT
* * *
37099224 ATATAATTTTTATTACAATATAAATTATAACAAAATATATAGTATTACATGTTATTATAATTTTT
1 ATATAATTTTTATTA-AATATAAATTACAACAAAATATATAGTATTACATGGTATTATAATGTTT
* * * * *
37099289 AATCATTGATGCATATATATAAACTATTAATATATTATATGATATGGTATAGCATTATATAATAT
65 AATCATTAATGCATATATATAAACTAATAATATATTATATGATATGATATAGCATTACATAATAC
* * * *
37099354 AGT-AGGAGGAT-TAACTTTCAAATGTACGAAAAATATAAGGACTTAAAGCATATTTCAACTAGT
130 A-TCA-GA-AATCTAACTTTCAAATGTAAGAAAAATATAAGGACTTAAAGCATAATTCAACTAAT
* *
37099417 ACAATAATAAA-ATTAATATATAAAAATAAGTAATATATAATGTACTACTACTAC
192 ACAATAATAAACAATAATATATAAAAATAAGCAATATATAATGTACTACTACTAC
* *
37099471 ATATAATTTTTA-T-AATATACATTACAACAAAATATATAGTATTACATGGTATTTTAATGTTTA
1 ATATAATTTTTATTAAATATAAATTACAACAAAATATATAGTATTACATGGTATTATAATGTTTA
* * *
37099534 ATCATTAATGCATATATATAAATTAATAATATATTATTTGATATGATATATCATTACATAATACA
66 ATCATTAATGCATATATATAAACTAATAATATATTATATGATATGATATAGCATTACATAATACA
* * * *
37099599 TCAGAAATGCTAACTTTCAAATGTAAGAAAAGTATAGGGACTTAGAGCATAATTCAACTAATATA
131 TCAGAAAT-CTAACTTTCAAATGTAAGAAAAATATAAGGACTTAAAGCATAATTCAACTAATACA
* * * *
37099664 ATGATAAACAATAATATATAATAATATGCAATATATATTGTACTA
195 ATAATAAACAATAATATATAAAAATAAGCAATATATAATGTACTA
37099709 ATATTATGTT
Statistics
Matches: 207, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
242 2 0.01
243 3 0.01
244 158 0.76
245 31 0.15
246 1 0.00
247 12 0.06
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (246 bp):
ATATAATTTTTATTAAATATAAATTACAACAAAATATATAGTATTACATGGTATTATAATGTTTA
ATCATTAATGCATATATATAAACTAATAATATATTATATGATATGATATAGCATTACATAATACA
TCAGAAATCTAACTTTCAAATGTAAGAAAAATATAAGGACTTAAAGCATAATTCAACTAATACAA
TAATAAACAATAATATATAAAAATAAGCAATATATAATGTACTACTACTAC
Found at i:37102362 original size:112 final size:111
Alignment explanation
Indices: 37102212--37102437 Score: 425
Period size: 112 Copynumber: 2.0 Consensus size: 111
37102202 AACGTTTCCA
37102212 TAGTTAATGAATTAAAAGGACTAAATCGTAAAAGATGTAAAATTTGATCACTATTTGATTTCAGT
1 TAGTTAATGAATTAAAAGGACTAAATCGTAAAAGATGTAAAATTTGATCACTATTTGATTTCAGT
37102277 GGTTAAATGGTTAATTGAATAAAGGAAAAGATACTTAAATGGTAAT
66 GGTTAAATGGTTAATTGAATAAAGGAAAAGATACTTAAATGGTAAT
* *
37102323 TAGTTAATGAATTAAAAAGGACTAAATCGTAAAATATGTAAAATTTGATCACTATTTGATTTTAG
1 TAGTTAATGAATT-AAAAGGACTAAATCGTAAAAGATGTAAAATTTGATCACTATTTGATTTCAG
37102388 TGGTTAAATGGTTAATTGAATAAAGGAAAAGATACTTAAATGGTAAT
65 TGGTTAAATGGTTAATTGAATAAAGGAAAAGATACTTAAATGGTAAT
37102435 TAG
1 TAG
37102438 ACCATTCAAG
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
111 13 0.12
112 99 0.88
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (111 bp):
TAGTTAATGAATTAAAAGGACTAAATCGTAAAAGATGTAAAATTTGATCACTATTTGATTTCAGT
GGTTAAATGGTTAATTGAATAAAGGAAAAGATACTTAAATGGTAAT
Found at i:37110012 original size:49 final size:50
Alignment explanation
Indices: 37109920--37110064 Score: 132
Period size: 49 Copynumber: 2.9 Consensus size: 50
37109910 TTTCCTACAC
* * * * * **
37109920 TGCCAATGCCATATCCCAGATATGGTTTTACATAGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAAACATGGTCTTACGTGGGACCTCTCATATCGG
* * *
37109970 T-CCCATGCCATATCCCAAACATGGTCTTACG-GGAGACCTCTCATCTCTG
1 TGCCAATGCCATATCCCAAACATGGTCTTACGTGG-GACCTCTCATATCGG
* ** * *
37110019 TGCCAATGCCATGTCCCAGGCATTGTCTTACGTGGGACCACTCATA
1 TGCCAATGCCATATCCCAAACATGGTCTTACGTGGGACCTCTCATA
37110065 ACCTCAATAA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 37 0.49
50 35 0.47
51 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAAACATGGTCTTACGTGGGACCTCTCATATCGG
Found at i:37122294 original size:96 final size:96
Alignment explanation
Indices: 37122179--37123311 Score: 2153
Period size: 96 Copynumber: 11.8 Consensus size: 96
37122169 GTATATTTGA
*
37122179 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
37122244 ATACATATGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
*
37122275 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122340 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122371 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122436 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122467 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122532 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122563 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122628 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122659 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122724 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122755 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122820 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122851 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37122916 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37122947 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37123012 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37123043 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
37123108 ATACATGTGATAAGGCCGAATGGCCAATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
37123139 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
37123204 ATACATGTGATAAGGCCGAATAGCCCATGTG
66 ATACATGTGATAAGGCCGAATGGCCAATGTG
* * * * *
37123235 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
37123298 ATAAATGTGATAAG
66 ATACATGTGATAAG
37123312 TCCCGAAGGG
Statistics
Matches: 1027, Mismatches: 10, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
94 56 0.05
96 971 0.95
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATACATGTGATAAGGCCGAATGGCCAATGTG
Found at i:37123566 original size:180 final size:180
Alignment explanation
Indices: 37123264--37123622 Score: 718
Period size: 180 Copynumber: 2.0 Consensus size: 180
37123254 TATGTGATAA
37123264 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTTGT
1 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTTGT
37123329 GTCAATACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGT
66 GTCAATACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGT
37123394 CCGTAAGCTTCGTGCTCGTTCTATATCCGGGCTCTAAAGACCCGATGACG
131 CCGTAAGCTTCGTGCTCGTTCTATATCCGGGCTCTAAAGACCCGATGACG
37123444 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTTGT
1 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTTGT
37123509 GTCAATACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGT
66 GTCAATACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGT
37123574 CCGTAAGCTTCGTGCTCGTTCTATATCCGGGCTCTAAAGACCCGATGAC
131 CCGTAAGCTTCGTGCTCGTTCTATATCCGGGCTCTAAAGACCCGATGAC
37123623 TACGTGTGGA
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 179 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (180 bp):
GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGGCATTTGT
GTCAATACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCACTGATTAATGT
CCGTAAGCTTCGTGCTCGTTCTATATCCGGGCTCTAAAGACCCGATGACG
Found at i:37123717 original size:37 final size:37
Alignment explanation
Indices: 37123610--37123717 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
37123600 CCGGGCTCTA
*
37123610 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
37123647 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * * *
37123684 AAGACCCGATAACTTCATGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
37123718 AGCTAAAGGT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:37127449 original size:20 final size:20
Alignment explanation
Indices: 37127426--37127463 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37127416 ATAAGCAAAG
37127426 ATAAAACAAGATAAAATGAA
1 ATAAAACAAGATAAAATGAA
*
37127446 ATAAAATAAGATAAAATG
1 ATAAAACAAGATAAAATG
37127464 GAACTTGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.11, T:0.18
Consensus pattern (20 bp):
ATAAAACAAGATAAAATGAA
Found at i:37127462 original size:10 final size:10
Alignment explanation
Indices: 37127423--37127462 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
37127413 AAGATAAGCA
*
37127423 AAGATAAAAC
1 AAGATAAAAT
37127433 AAGATAAAAT
1 AAGATAAAAT
37127443 GAA-ATAAAAT
1 -AAGATAAAAT
37127453 AAGATAAAAT
1 AAGATAAAAT
37127463 GGAACTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (10 bp):
AAGATAAAAT
Found at i:37127904 original size:17 final size:18
Alignment explanation
Indices: 37127855--37127892 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37127845 TATAACATAT
*
37127855 ATATCTCACATTTACCCC
1 ATATCACACATTTACCCC
37127873 ATATCACACATTTACCCC
1 ATATCACACATTTACCCC
37127891 AT
1 AT
37127893 TTACACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.32
Consensus pattern (18 bp):
ATATCACACATTTACCCC
Found at i:37133056 original size:51 final size:50
Alignment explanation
Indices: 37132976--37133175 Score: 206
Period size: 51 Copynumber: 3.9 Consensus size: 50
37132966 TGCCTATAAA
**
37132976 CACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCGATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGA-AGATAATGGT
* * * * * **
37133027 CACATGTGTAGTACTATGTGCAGGTTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAAGATAATGGT
* * * *
37133078 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAA-AGT-TTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCGAAGA-TAATGGT
* *
37133128 CACGTGTGTAGTACTATGTGAAGGTTACTACGTGTATCGAATGATAAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAA-GATAAT
37133176 AATTACACGG
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
49 4 0.03
50 38 0.31
51 77 0.64
52 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAGATAATGGT
Found at i:37136985 original size:19 final size:21
Alignment explanation
Indices: 37136961--37137008 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
37136951 TTGTTTCATA
37136961 GAAAATAG-CTT-GGTCAACG
1 GAAAATAGACTTAGGTCAACG
37136980 GAAAAT-GACTTACAGGTCAACG
1 GAAAATAGACTT--AGGTCAACG
37137002 GAAAATA
1 GAAAATA
37137009 AGCCTTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
19 9 0.38
22 14 0.58
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.19
Consensus pattern (21 bp):
GAAAATAGACTTAGGTCAACG
Found at i:37137308 original size:31 final size:30
Alignment explanation
Indices: 37137246--37137311 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
37137236 TTTAGTCATA
37137246 TAATAAATTATTAATATAAATTATTATTTT
1 TAATAAATTATTAATATAAATTATTATTTT
37137276 TAATAAATTATTTAATATTTAAATT-TTA-TTT
1 TAATAAATTA-TTAATA--TAAATTATTATTTT
37137307 TAATA
1 TAATA
37137312 GTAAATTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 10 0.30
31 14 0.42
32 3 0.09
33 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
TAATAAATTATTAATATAAATTATTATTTT
Found at i:37139958 original size:23 final size:22
Alignment explanation
Indices: 37139915--37139972 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
37139905 AAAGGGTATC
* *
37139915 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37139936 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
37139959 TACATATCATATCT
1 TACAAATCATATCT
37139973 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37139975 original size:19 final size:19
Alignment explanation
Indices: 37139928--37140004 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
37139918 AAATTAAATC
*
37139928 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
37139948 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
37139970 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
37139989 TCTAAGATTACATATC
1 TCTAAGATTACATATC
37140005 CTCGAAGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
22 7 0.14
23 11 0.22
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:37140673 original size:132 final size:132
Alignment explanation
Indices: 37140513--37141532 Score: 1715
Period size: 132 Copynumber: 7.8 Consensus size: 132
37140503 GAGATAGGAT
** * *
37140513 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTTTCGTTTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
* *
37140578 ACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37140643 GC
131 GC
* *
37140645 TTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
*
37140710 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37140775 GC
131 GC
* *
37140777 TTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTACCGTCTTCGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
37140842 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37140907 GC
131 GC
*
37140909 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
*
37140974 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37141039 GC
131 GC
* * * *
37141041 TTGGTGGCTTAAATCTGTTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATATGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
*
37141106 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGGA-AA
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA-GACAA
37141170 GGC
130 GGC
* *
37141173 TTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
* * * *
37141238 ACTACTGTTTAGGGAGATAAGATCTACAATCTTCAATCTTCTCCACTGCTGCTCA--GAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37141301 GC
131 GC
* * * *
37141303 TTTGTGGTTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
* *
37141368 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTACTCTGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
37141433 GC
131 GC
*
37141435 TTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
1 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
*
37141500 ACTTCTGCTTAGGGAGATAAGATCTAC-ATCTTC
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTC
37141533 GATCCACTTC
Statistics
Matches: 840, Mismatches: 44, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
129 2 0.00
130 119 0.14
131 6 0.01
132 711 0.85
133 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (132 bp):
TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCC
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
GC
Found at i:37140728 original size:44 final size:44
Alignment explanation
Indices: 37140569--37141522 Score: 275
Period size: 44 Copynumber: 21.7 Consensus size: 44
37140559 TTCGTTTTTG
* ***
37140569 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * * * * * ** * *
37140613 ACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTT-GTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAA-GATTTACCGTCTTCA
* * **
37140657 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCTTTG
1 ATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTACCGTCTTCA
* * **
37140701 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * * * * ** *** * *
37140745 ACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
** *
37140789 ATCTGCTTCCCACTA-T-CTTAGAAAGATAAGATTTACCGTCTTCG
1 ATCTGC-T-CCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* **
37140833 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * * * * ** *** * *
37140877 ACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* *
37140921 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTACCGTCTTCG
1 ATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTACCGTCTTCA
* **
37140965 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * ** * * ** *** * *
37141009 ACCTACTCCGCTGTTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * ** * *
37141053 ATCTGTTTCCCACTA-T-CTT-GGAAAGATAAGATTTGTCATCTTCG
1 ATCTG-CT-CCACTACTGCTTAGG-GAGATAAGATTTACCGTCTTCA
* * **
37141097 ATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * * * * ** * *
37141141 ACCTTCTCCGCTGCTGCTCAGGGAGGA-AAGGCTTT-GTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGA-GATAA-GATTTACCGTCTTCA
* * **
37141185 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCTTTG
1 ATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTACCGTCTTCA
* * **
37141229 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATCTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * * * * *** *
37141273 ATCTTCTCCACTGCTGCTCA--GAGACAAGGCTTTGTGGT-TTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAA-GATTTACCGTCTTCA
* ** **
37141315 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGTCGTCTTTG
1 ATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTACCGTCTTCA
* ** *
37141359 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
* * ** * * * ** *** * *
37141403 ACCTACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
** * *
37141447 ATCTGCTTCCCACTA-T-CTTAGAAAGATAAGATTTGCCGTCTTCG
1 ATCTGC-T-CCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
*
37141491 ATCTGCTCCACTTCTGCTTAGGGAGATAAGAT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGAT
37141523 CTACATCTTC
Statistics
Matches: 619, Mismatches: 243, Indels: 96
0.65 0.25 0.10
Matches are distributed among these distances:
42 57 0.09
43 46 0.07
44 463 0.75
45 30 0.05
46 23 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCGTCTTCA
Found at i:37141586 original size:44 final size:44
Alignment explanation
Indices: 37141509--37141743 Score: 255
Period size: 44 Copynumber: 5.4 Consensus size: 44
37141499 CACTTCTGCT
* * * *
37141509 TAGGGAGATAAGATCTAC-ATCTTCGATCCACTTC-CTACCAATA
1 TAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * *
37141552 TAGGAAGACAGGATCTGCTACCTTCGATCTACTTCACGCCAATA
1 TAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * *
37141596 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATA
1 TAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
*
37141641 T-GAGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATA
1 TAG-GAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * *
37141684 TAGGAAGACAGGATCTGCTATCTTCGATCTATTTCACGCCAATA
1 TAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
*
37141728 TATGAAGACAAGATCT
1 TAGGAAGACAAGATCT
37141744 ACTTTTTCAC
Statistics
Matches: 160, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 36 0.22
44 99 0.62
45 24 0.15
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
TAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
Found at i:37146759 original size:235 final size:234
Alignment explanation
Indices: 37146348--37146828 Score: 899
Period size: 235 Copynumber: 2.1 Consensus size: 234
37146338 GTAAATCTAT
**
37146348 AAATAAATAAAATCTGGAGGATTAAATTGAACGCGAGAATTACATGGAGGGGCTGGAAGGGCAAT
1 AAATAAATAAAATCTGGAGGATTAAATTGAACGCGAGAATTACATAAAGGGGCTGGAAGGGCAAT
37146413 TTTCCCTTCTCCTCTAAAACGACGCCGTTCAAAAGGATTAAATTGGAATTTAAAATAAATAAAAG
66 TTTCCCTTCTCCTCTAAAACGACGCCGTTCAAAAGGATTAAATTGGAATTTAAAATAAATAAAAG
37146478 GGTAAATTAAAAAAATAAAAAAACTTAATTACAAAAACATTAAAAGGTGGAGGGGCTAAATAAAA
131 GGTAAATTAAAAAAATAAAAAAACTTAATTACAAAAACATTAAAAGGTGGAGGGGCTAAATAAAA
37146543 TTCGCAGTGGTATCACCTTCTCCCCTTTTTTAAAATCAGC
196 TTCGCAGTGGTATCACCTTCTCCCCTTTTTTAAAATCA-C
* *
37146583 AAATAAATAAAATTTGGAGGATTAAATTGAATGCGAGAATTACATAAAGGGGCTGGAAGGGCAAT
1 AAATAAATAAAATCTGGAGGATTAAATTGAACGCGAGAATTACATAAAGGGGCTGGAAGGGCAAT
37146648 TTTCCCTTCTCCTCTAAAACGACGCCGTTCAAAAGGATTAAATTGGAATTTAAAATAAATAAAAG
66 TTTCCCTTCTCCTCTAAAACGACGCCGTTCAAAAGGATTAAATTGGAATTTAAAATAAATAAAAG
37146713 GGTAAATTAAAAAAATAAAAAAACTTAATTACAAAAACATTAAAAGGTGGAGGGGCTAAATAAAA
131 GGTAAATTAAAAAAATAAAAAAACTTAATTACAAAAACATTAAAAGGTGGAGGGGCTAAATAAAA
*
37146778 TTCGCAGTGGTATCACCTTCTCCCCTTTTTTAAAATCAT
196 TTCGCAGTGGTATCACCTTCTCCCCTTTTTTAAAATCAC
*
37146817 AAATAAGTAAAA
1 AAATAAATAAAA
37146829 AATAATCGAA
Statistics
Matches: 240, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
234 11 0.05
235 229 0.95
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (234 bp):
AAATAAATAAAATCTGGAGGATTAAATTGAACGCGAGAATTACATAAAGGGGCTGGAAGGGCAAT
TTTCCCTTCTCCTCTAAAACGACGCCGTTCAAAAGGATTAAATTGGAATTTAAAATAAATAAAAG
GGTAAATTAAAAAAATAAAAAAACTTAATTACAAAAACATTAAAAGGTGGAGGGGCTAAATAAAA
TTCGCAGTGGTATCACCTTCTCCCCTTTTTTAAAATCAC
Found at i:37147270 original size:252 final size:251
Alignment explanation
Indices: 37146816--37147317 Score: 923
Period size: 252 Copynumber: 2.0 Consensus size: 251
37146806 TTTAAAATCA
*
37146816 TAAATAAGTAAAAAATAATCGAAAGAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCGTTC
1 TAAATAAGTAAAAAATAATCGAAAGAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCATTC
* * * *
37146881 TCTTTTTTATTCCTCCTCCCTCTTTTTCCTCTCCCTTTACAATGAAGGGAGAGGCCTCTATTTAT
66 TCTTTTTTATTCCTCCTCCATCTTTTTCCTCCCCCTTCACAATGAAGAGAGAGGCCTCTATTTAT
37146946 AGTAGAGCCTCCCCAAATCCAACAGTACAAATCAATTACATCAACGGCTGAGATTAAAGGGTATC
131 AGTAGAGCCTCCCCAAATCCAACAGTACAAATCAATTACATCAACGGCTGAGATTAAAGGGTATC
37147011 TACAAATTAAATCTCTAAGATTACAAAATCATATCTTCTAAGATTACATATCATAG
196 TACAAATTAAATCTCTAAGATTACAAAATCATATCTTCTAAGATTACATATCATAG
37147067 TAAATAAGTAAAAAAATAATCGAAAGAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCATT
1 TAAATAAGT-AAAAAATAATCGAAAGAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCATT
*
37147132 CTCTTTTTTATTTCTCCTCCATCTTTTTCCTCCCCCTTCACAATGAAGAGAGAGGCCTCTATTTA
65 CTCTTTTTTATTCCTCCTCCATCTTTTTCCTCCCCCTTCACAATGAAGAGAGAGGCCTCTATTTA
* *
37147197 TAGTAGAGCCTCCCCAAATCCAACGGTACAGATCAATTACATCAACGGCTGAGATTAAAGGGTAT
130 TAGTAGAGCCTCCCCAAATCCAACAGTACAAATCAATTACATCAACGGCTGAGATTAAAGGGTAT
37147262 CTACAAATTAAATCTCTAAGATTACAAAATCATATCTTCTAAGATTACATATCATA
195 CTACAAATTAAATCTCTAAGATTACAAAATCATATCTTCTAAGATTACATATCATA
37147318 TCTAAGATTG
Statistics
Matches: 242, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
251 9 0.04
252 233 0.96
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (251 bp):
TAAATAAGTAAAAAATAATCGAAAGAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCATTC
TCTTTTTTATTCCTCCTCCATCTTTTTCCTCCCCCTTCACAATGAAGAGAGAGGCCTCTATTTAT
AGTAGAGCCTCCCCAAATCCAACAGTACAAATCAATTACATCAACGGCTGAGATTAAAGGGTATC
TACAAATTAAATCTCTAAGATTACAAAATCATATCTTCTAAGATTACATATCATAG
Found at i:37147306 original size:23 final size:22
Alignment explanation
Indices: 37147263--37147320 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
37147253 AAAGGGTATC
* *
37147263 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37147284 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
37147307 TACATATCATATCT
1 TACAAATCATATCT
37147321 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37147323 original size:19 final size:19
Alignment explanation
Indices: 37147276--37147352 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
37147266 AAATTAAATC
*
37147276 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
37147296 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
37147318 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
37147337 TCTAAGATTACATATC
1 TCTAAGATTACATATC
37147353 CTCGAAGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
22 7 0.14
23 11 0.22
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:37150405 original size:18 final size:17
Alignment explanation
Indices: 37150379--37150412 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37150369 TGTAAATTTT
37150379 AAAAAAATATATAATATC
1 AAAAAAATATA-AATATC
*
37150397 AAAATAATATAAATAT
1 AAAAAAATATAAATAT
37150413 TGCAGGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAAATATAAATATC
Found at i:37150866 original size:13 final size:14
Alignment explanation
Indices: 37150844--37150876 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
37150834 GTTTCGTAAA
*
37150844 ATAAATATAA-AAG
1 ATAAAAATAATAAG
37150857 ATAAAAATAATAAG
1 ATAAAAATAATAAG
37150871 ATAAAA
1 ATAAAA
37150877 GAAACATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (14 bp):
ATAAAAATAATAAG
Found at i:37154544 original size:15 final size:15
Alignment explanation
Indices: 37154524--37154558 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
37154514 TATATATGCC
*
37154524 ACAATAGTAAATACA
1 ACAATAATAAATACA
*
37154539 ACAATAATAAATATA
1 ACAATAATAAATACA
37154554 ACAAT
1 ACAAT
37154559 GGCATAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:37154825 original size:18 final size:19
Alignment explanation
Indices: 37154804--37154841 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
37154794 ATGTGGAAAG
*
37154804 TGTATATGTGT-TATAAAA
1 TGTATATGTATATATAAAA
37154822 TGTATATGTATATATAAAA
1 TGTATATGTATATATAAAA
37154841 T
1 T
37154842 ATAAAGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (19 bp):
TGTATATGTATATATAAAA
Found at i:37154975 original size:21 final size:20
Alignment explanation
Indices: 37154922--37154976 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
37154912 AGTTAAAAAT
*
37154922 ATATATTATATAAAAAAATGC
1 ATATATAATAT-AAAAAATGC
*
37154943 ATATATATTATAAAAAATGC
1 ATATATAATATAAAAAATGC
* *
37154963 GTGTATAAATATAA
1 ATATAT-AATATAA
37154977 TAATAATAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.35
Consensus pattern (20 bp):
ATATATAATATAAAAAATGC
Found at i:37155024 original size:26 final size:27
Alignment explanation
Indices: 37154967--37155032 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
37154957 AAATGCGTGT
37154967 ATAAATATAAT-AATAATAACAACAACA
1 ATAAA-ATAATAAATAATAACAACAACA
* *
37154994 A-AAAATAATAAATAATAACTA-AATA
1 ATAAAATAATAAATAATAACAACAACA
37155019 ATAAAATAACTAAA
1 ATAAAATAA-TAAA
37155033 AAAATGGACT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 9 0.26
26 20 0.59
27 5 0.15
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.23
Consensus pattern (27 bp):
ATAAAATAATAAATAATAACAACAACA
Found at i:37157258 original size:42 final size:42
Alignment explanation
Indices: 37157211--37157301 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
37157201 CACAGTCCAA
* * *
37157211 GACACGGGCTGAGACACAACCGTGTG-TCTCAAGTCAGTGAGT
1 GACACGGCCTGAGACACAACCGTGTGAGC-CAAGTCAATGAGT
* **
37157253 GACACGGCCTGCGACATGACCGTGTGAGCCAAGTCAATGAGT
1 GACACGGCCTGAGACACAACCGTGTGAGCCAAGTCAATGAGT
*
37157295 TACACGG
1 GACACGG
37157302 TCCATGAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.18
Consensus pattern (42 bp):
GACACGGCCTGAGACACAACCGTGTGAGCCAAGTCAATGAGT
Found at i:37166289 original size:13 final size:13
Alignment explanation
Indices: 37166271--37166324 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
37166261 AGTTTAGTAT
37166271 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37166284 TGCTTTTGAGAAA-
1 TGCTTTTGA-AAAG
* *
37166297 TGCTGTGGAAAAAG
1 TGCTTTTG-AAAAG
*
37166311 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
37166324 T
1 T
37166325 TTTGTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37166634 original size:21 final size:19
Alignment explanation
Indices: 37166574--37166635 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 19
37166564 ATTTAAATAG
*
37166574 AATATATAAACTATAT-TTA
1 AATATTTAAA-TATATATTA
37166593 AATATTTAAATATAATCATTA
1 AATATTTAAATAT-AT-ATTA
*
37166614 AATATTTGTAATTATATATTA
1 AATA-TT-TAAATATATATTA
37166635 A
1 A
37166636 CACAGTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.31
21 12 0.33
22 4 0.11
23 6 0.17
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (19 bp):
AATATTTAAATATATATTA
Found at i:37168759 original size:72 final size:72
Alignment explanation
Indices: 37168325--37168733 Score: 583
Period size: 72 Copynumber: 5.7 Consensus size: 72
37168315 TCACCTATGA
** * * * * **
37168325 ATAAATTGTATATCC-AAAATCAAATATAAAAAACTATTGATAAAACTA-ATTTA-GTATAAATA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGA-TTACACATAAATA
*
37168387 AGTAGAAT
65 AGTAGAAC
* ** * *
37168395 ATAAATTCAATATCCAAAAACTAAACATAAACAATTATTGATAAAACTAGCCTGA-AGCATAAAT
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAG-ATTACA-CATAAAT
*
37168459 AAGTAGACC
64 AAGTAGAAC
* *
37168468 ATAAATTCAACATCCAAAAACCAAACATAGACAACCATTGATAAAACTAGATTACACATAAATAA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAA
37168533 GTAGAAC
66 GTAGAAC
*
37168540 ATAAATTCAATATCCAAAAACCAAATATAAACAACCATTGATAAAACTAGATTACACATAAATAA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAA
37168605 GTAGAAC
66 GTAGAAC
*
37168612 ATAAATTCAATATCCAAAAACCAAATATAAACAACCATTGATAAAACTAGATTACACATAAATAA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAA
37168677 GTAGAAC
66 GTAGAAC
*
37168684 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAG
37168734 TTTAGCATTG
Statistics
Matches: 308, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
70 13 0.04
71 28 0.09
72 208 0.68
73 59 0.19
ACGTcount: A:0.55, C:0.16, G:0.06, T:0.23
Consensus pattern (72 bp):
ATAAATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAA
GTAGAAC
Found at i:37175168 original size:43 final size:43
Alignment explanation
Indices: 37175100--37175289 Score: 220
Period size: 43 Copynumber: 4.4 Consensus size: 43
37175090 CTATCACCTC
* * * * * *
37175100 AGTGCATCATTGGATAAACCGAAGGAAATATACTGGAACATGT
1 AGTGCATCATCGAATAAACCAAAGGAAATATACTAGCACATAT
* *
37175143 AGTGCATCATCGAATAAATCAAAGGAAATATACTAGCACACAT
1 AGTGCATCATCGAATAAACCAAAGGAAATATACTAGCACATAT
* *
37175186 AGTGCATCATC-AGATAAATCAAAGGAAATATACTAGCACATGT
1 AGTGCATCATCGA-ATAAACCAAAGGAAATATACTAGCACATAT
* * * * * *
37175229 AGTGCATCATCAAATAAACCGAAGCAATTATACTGGCACCTAT
1 AGTGCATCATCGAATAAACCAAAGGAAATATACTAGCACATAT
37175272 AGTGCATCATCGAATAAA
1 AGTGCATCATCGAATAAA
37175290 ATGAAGTATA
Statistics
Matches: 127, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.01
43 125 0.98
44 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.23
Consensus pattern (43 bp):
AGTGCATCATCGAATAAACCAAAGGAAATATACTAGCACATAT
Found at i:37185443 original size:34 final size:35
Alignment explanation
Indices: 37185400--37185467 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
37185390 GCATATTTGA
* *
37185400 TACTATACTG-AGATGGGCTAAGGCCCAA-ACTGT
1 TACTATACTGAAAAAGGGCTAAGGCCCAAGACTGT
*
37185433 TACTGATACTGAAAAAGGGCTTAGGCCCAAGACTG
1 TACT-ATACTGAAAAAGGGCTAAGGCCCAAGACTG
37185468 CTTTAACTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.14
34 6 0.21
35 15 0.52
36 4 0.14
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (35 bp):
TACTATACTGAAAAAGGGCTAAGGCCCAAGACTGT
Found at i:37211608 original size:13 final size:13
Alignment explanation
Indices: 37211592--37211622 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
37211582 ATTTAGTTAT
37211592 TTAATTTCTATCA
1 TTAATTTCTATCA
37211605 TTAATTTCTATCA
1 TTAATTTCTATCA
37211618 TTAAT
1 TTAAT
37211623 AATATTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAATTTCTATCA
Found at i:37214035 original size:17 final size:17
Alignment explanation
Indices: 37214013--37214045 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37214003 AGTATAGGGG
37214013 CAAAATGAT-AATTTTTC
1 CAAAAT-ATGAATTTTTC
37214030 CAAAATATGAATTTTT
1 CAAAATATGAATTTTT
37214046 GGGCTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.42
Consensus pattern (17 bp):
CAAAATATGAATTTTTC
Found at i:37214343 original size:29 final size:29
Alignment explanation
Indices: 37214308--37214375 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
37214298 ATCGACGAAT
*
37214308 GAAAAGGGATAGCTTTGGCTATCGAATAC
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
* * *
37214337 GGAAAGGGATAGCTTCGGCTATCGATTAT
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
37214366 GAAAAGGGAT
1 GAAAAGGGAT
37214376 TGTGACGACC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATAGCTTCGGCTATCGAATAC
Found at i:37214396 original size:29 final size:30
Alignment explanation
Indices: 37214364--37214435 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
37214354 GCTATCGATT
*
37214364 ATGAAAAGGGATTGTGACGACCA-TCAAAA
1 ATGAAAAGGGATGGTGACGACCATTCAAAA
* **
37214393 ATGAAAA-GGATGGTGACGACCATTGAACT
1 ATGAAAAGGGATGGTGACGACCATTCAAAA
37214422 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
37214436 CTTCGACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 14 0.38
29 17 0.46
30 6 0.16
ACGTcount: A:0.42, C:0.11, G:0.29, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATTCAAAA
Found at i:37214451 original size:30 final size:30
Alignment explanation
Indices: 37214306--37214613 Score: 175
Period size: 30 Copynumber: 10.4 Consensus size: 30
37214296 TCATCGACGA
* * *
37214306 ATGAAAAGGGATAGCTTTGGCTATCGAA-T
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* * * * *
37214335 ACGGAAAGGGATAGCTTCGGCTATCG-ATT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* * * **
37214364 ATGAAAAGGGATTG-TGACGACCATC-AAAA
1 ATGAAAAGGGATGGCT-TCGACTATCGAACT
* * *
37214393 ATGAAAA-GGATGG-TGACGACCATTGAACT
1 ATGAAAAGGGATGGCT-TCGACTATCGAACT
37214422 ATGAAAAGGGATGGCTTCGACTATCGAACT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* * *
37214452 ATGAAAAGAGATGGCTTC-AGCTAGCGATCT
1 ATGAAAAGGGATGGCTTCGA-CTATCGAACT
* * * * *
37214482 ATGAAAAGGGATAGTTTCGGCTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* * *
37214512 ATGAAAAGGGATGG-TAACGACCATCGAACA
1 ATGAAAAGGGATGGCT-TCGACTATCGAACT
* * * * *
37214542 ATGAAAAGGGATGG-TGACAACCATCAAATT
1 ATGAAAAGGGATGGCT-TCGACTATCGAACT
* * * * *
37214572 ATGAAAAGGGATAGCTTTGGCTGTTGAACT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
37214602 ATGAAAAGGGAT
1 ATGAAAAGGGAT
37214614 AACTTCGATT
Statistics
Matches: 218, Mismatches: 51, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
28 17 0.08
29 60 0.28
30 139 0.64
31 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCGAACT
Found at i:37214546 original size:60 final size:59
Alignment explanation
Indices: 37214363--37214583 Score: 196
Period size: 60 Copynumber: 3.7 Consensus size: 59
37214353 GGCTATCGAT
* ** * * *
37214363 TATGAAAAGGGATTGTGACGACCATCAAA-AATGAAAA-GGATGGTGACGACCATTGAAC
1 TATGAAAAGGGATGGTTTCGACTATCAAATTATGAAAAGGGATGGT-ACGACCATCGAAC
* * * * * * * *
37214421 TATGAAAAGGGATGGCTTCGACTATCGAACTATGAAAAGAGATGGCTTC-AGCTAGCGATC
1 TATGAAAAGGGATGGTTTCGACTATCAAATTATGAAAAGGGATGG-TACGA-CCATCGAAC
* *
37214481 TATGAAAAGGGATAGTTTCGGCTATCAAATTATGAAAAGGGATGGTAACGACCATCGAAC
1 TATGAAAAGGGATGGTTTCGACTATCAAATTATGAAAAGGGATGGT-ACGACCATCGAAC
* ** * *
37214541 AATGAAAAGGGATGGTGACAACCATCAAATTATGAAAAGGGAT
1 TATGAAAAGGGATGGTTTCGACTATCAAATTATGAAAAGGGAT
37214584 AGCTTTGGCT
Statistics
Matches: 127, Mismatches: 30, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
58 23 0.18
59 9 0.07
60 93 0.73
61 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (59 bp):
TATGAAAAGGGATGGTTTCGACTATCAAATTATGAAAAGGGATGGTACGACCATCGAAC
Found at i:37215216 original size:25 final size:25
Alignment explanation
Indices: 37215179--37215228 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37215169 AATGATGGAA
*
37215179 GATGAAATGATAGTTGAATATGCAT
1 GATGAAATCATAGTTGAATATGCAT
37215204 GATGAAATCATAGTTGAATATGCAT
1 GATGAAATCATAGTTGAATATGCAT
37215229 ATTGCATAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (25 bp):
GATGAAATCATAGTTGAATATGCAT
Found at i:37217736 original size:24 final size:24
Alignment explanation
Indices: 37217709--37217759 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
37217699 CCAAGGATGT
37217709 ATAACAGATGTTAATTTAGCTAAA
1 ATAACAGATGTTAATTTAGCTAAA
37217733 ATAACAGATGTTAATTTAGCTAAA
1 ATAACAGATGTTAATTTAGCTAAA
37217757 ATA
1 ATA
37217760 GTGGGTGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (24 bp):
ATAACAGATGTTAATTTAGCTAAA
Found at i:37231331 original size:5 final size:5
Alignment explanation
Indices: 37231321--37231352 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
37231311 AGCTACAATC
37231321 ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG AT
1 ATTAG ATTAG ATTAG ATTAG ATTAG ATTAG AT
37231353 GTTTATCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTAG
Found at i:37232110 original size:61 final size:61
Alignment explanation
Indices: 37232035--37232171 Score: 220
Period size: 61 Copynumber: 2.2 Consensus size: 61
37232025 TGCTGGAAAA
* * * *
37232035 TGTTATTGATTTGTTAGTGAGTAGAAGATGAAATTGGAAGTTGTTGTAGTTGTTTTGATAT
1 TGTTCTTGATTTGTTAGTGAGTAGAAGATGAAACTGGAAATTGTTGCAGTTGTTTTGATAT
* *
37232096 TGTTCTTGATTTGTTAGTTAGTAGAAGATGAAACTGGAAATTGTTGCATTTGTTTTGATAT
1 TGTTCTTGATTTGTTAGTGAGTAGAAGATGAAACTGGAAATTGTTGCAGTTGTTTTGATAT
37232157 TGTTCTTGATTTGTT
1 TGTTCTTGATTTGTT
37232172 CTGGAAATTG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.24, C:0.03, G:0.25, T:0.48
Consensus pattern (61 bp):
TGTTCTTGATTTGTTAGTGAGTAGAAGATGAAACTGGAAATTGTTGCAGTTGTTTTGATAT
Found at i:37232170 original size:22 final size:23
Alignment explanation
Indices: 37232155--37232216 Score: 101
Period size: 22 Copynumber: 2.7 Consensus size: 23
37232145 TTGTTTTGAT
37232155 ATTGTTCTTGATTTGTTCTGGAA
1 ATTGTTCTTGATTTGTTCTGGAA
37232178 ATTGTT-TTGA-TTGTTGCTGGAA
1 ATTGTTCTTGATTTGTT-CTGGAA
37232200 ATTGTTCTTGATTTGTT
1 ATTGTTCTTGATTTGTT
37232217 AGTCAGTAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.14
22 16 0.44
23 10 0.28
24 5 0.14
ACGTcount: A:0.16, C:0.06, G:0.23, T:0.55
Consensus pattern (23 bp):
ATTGTTCTTGATTTGTTCTGGAA
Found at i:37233424 original size:37 final size:37
Alignment explanation
Indices: 37233381--37233469 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
37233371 ATCATAAATA
*
37233381 AATAAACTAATCAATGTTCAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
37233418 ATTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
37233455 AATGAACTAATCAAT
1 AATAAACTAATCAAT
37233470 ATATTTATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.35
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
Found at i:37233721 original size:33 final size:33
Alignment explanation
Indices: 37233684--37233749 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
37233674 AATCTAACAA
37233684 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
37233717 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
37233750 GCTTTATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (33 bp):
ATACCAACAATTAATTTTAGGTCAATTATACAT
Found at i:37237569 original size:3 final size:3
Alignment explanation
Indices: 37237561--37237598 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
37237551 GGAAAGCATA
37237561 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37237599 ACCATGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37245763 original size:14 final size:14
Alignment explanation
Indices: 37245744--37245772 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37245734 AAACAGTATG
37245744 TATATGGATGAAGT
1 TATATGGATGAAGT
37245758 TATATGGATGAAGT
1 TATATGGATGAAGT
37245772 T
1 T
37245773 TAAAACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (14 bp):
TATATGGATGAAGT
Found at i:37246010 original size:69 final size:68
Alignment explanation
Indices: 37245937--37246141 Score: 198
Period size: 69 Copynumber: 3.0 Consensus size: 68
37245927 TAATCATATG
*
37245937 TGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATAGATA
1 TGATAAATCTAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATA-ATA
*
37246002 TACA
65 AACA
* * * * * *
37246006 TGATAAATTTAAAATAA-AGT-TAATGATGAATTTAAAATAATAATATTGATAAATTAGAAATAA
1 TGATAAATCTAAAATAATAGTAT-ATAATAAATTT-AAA-AATATTAATGATAAATTTGAAATAA
37246069 TAAACA
63 TAAACA
* * * * ** * *
37246075 TGATAAATCTAAAATAATAATATACAATACACTTAGGTAATATTAATGATTAATTTAATAATAAT
1 TGATAAATCTAAAATAATAGTATATAATAAATTTA-AAAATATTAATGATAAATTTGA-AATAAT
37246140 AA
64 AA
37246142 GTATAAACAT
Statistics
Matches: 107, Mismatches: 22, Indels: 13
0.75 0.15 0.09
Matches are distributed among these distances:
67 1 0.01
68 12 0.11
69 56 0.52
70 37 0.35
71 1 0.01
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (68 bp):
TGATAAATCTAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATAATAA
ACA
Done.