Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 127 of 141
Found at i:38041100 original size:50 final size:51
Alignment explanation
Indices: 38041001--38041239 Score: 218
Period size: 50 Copynumber: 4.7 Consensus size: 51
38040991 AAAGAGATCT
*
38041001 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-T-AG---ATGAGAGGTCC
38041057 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCATAGATGAGAGGTCC
** * * **
38041107 CCCGTAAGACCATGTCTGGAACATGGC-TTGGGCACCA-ATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATT-GGCACCATAGATGAGAGGTCC
* * * * * * * * **
38041157 CATGTAAGACCATATCTTGGATATGGCATTGGTA--GTACAGGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCATAGATGAGAGGTCC
* *
38041206 CATGTAAGGCCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
38041240 TGTTATTATC
Statistics
Matches: 154, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
49 38 0.25
50 76 0.49
51 2 0.01
53 2 0.01
56 36 0.23
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCATAGATGAGAGGTCC
Found at i:38048687 original size:56 final size:50
Alignment explanation
Indices: 38048591--38048830 Score: 186
Period size: 50 Copynumber: 4.7 Consensus size: 50
38048581 ATTTTTGTAA
* * *
38048591 AGAGATCCCATTTCAGACCATGTCTGGGACATGGCATTGGC-CTCATTGAGACTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC-C---GAG--T-TG
* *
38048647 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGTTG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGTTG
* * *
38048697 AGAGGTCCCCTGTAAGACCATATCTGGGACATGGCA-TGAGCACC-AATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTG-GCACCGAGT-TG
** * * *
38048747 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC-AG--G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGTTG
* ** *
38048796 AAAAATCCCATGTAAGACCATGTCTGGGATATGGC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
38048831 TTTGCCATTT
Statistics
Matches: 159, Mismatches: 19, Indels: 19
0.81 0.10 0.10
Matches are distributed among these distances:
49 37 0.23
50 76 0.48
51 3 0.02
52 2 0.01
53 3 0.02
56 37 0.23
57 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGTTG
Found at i:38056019 original size:36 final size:36
Alignment explanation
Indices: 38055974--38056086 Score: 138
Period size: 36 Copynumber: 3.0 Consensus size: 36
38055964 CCGGGCTAAG
38055974 TCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGC
1 TCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGC
*
38056010 TCCCGAAGGCATTTATGCTAGTGATTTTATCTGGGC
1 TCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGC
* * *
38056046 TAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGC
1 T----CCCGAAGGCATTTATGCTAG-TGATTTTATCCGGGC
38056086 T
1 T
38056087 AAGACCCGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
36 36 0.54
40 28 0.42
41 3 0.04
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (36 bp):
TCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGC
Found at i:38056086 original size:40 final size:40
Alignment explanation
Indices: 38055960--38056167 Score: 214
Period size: 40 Copynumber: 5.3 Consensus size: 40
38055950 CATTTGAATG
* * *
38055960 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
38056000 TTATCCGGGCT----CCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
38056036 TTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
38056076 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
38056116 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
38056156 ATATCC-GGCTAA
1 ATATCCGGGCTAA
38056168 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 14, Indels: 15
0.84 0.08 0.09
Matches are distributed among these distances:
36 35 0.24
39 7 0.05
40 102 0.69
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:38061133 original size:40 final size:40
Alignment explanation
Indices: 38060988--38061133 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
38060978 GCTACTCATT
* *
38060988 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
38061028 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
38061068 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-AACTCGCA
38061109 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38061134 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 76 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:38064064 original size:293 final size:293
Alignment explanation
Indices: 38063537--38064122 Score: 1172
Period size: 293 Copynumber: 2.0 Consensus size: 293
38063527 CACACCAATG
38063537 ACTAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCA
1 ACTAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCA
38063602 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTATCA
66 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTATCA
38063667 TTTATAGTGACGCATCTCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCC
131 TTTATAGTGACGCATCTCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCC
38063732 TATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCCGC
196 TATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCCGC
38063797 CATCGTATTTGCTTTGAAAATATGGCGACATTA
261 CATCGTATTTGCTTTGAAAATATGGCGACATTA
38063830 ACTAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCA
1 ACTAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCA
38063895 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTATCA
66 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTATCA
38063960 TTTATAGTGACGCATCTCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCC
131 TTTATAGTGACGCATCTCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCC
38064025 TATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCCGC
196 TATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCCGC
38064090 CATCGTATTTGCTTTGAAAATATGGCGACATTA
261 CATCGTATTTGCTTTGAAAATATGGCGACATTA
38064123 TTTGTTTGGT
Statistics
Matches: 293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
293 293 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (293 bp):
ACTAAGCTACTTCAAAAGGATGTTAAGTTCGAATGGACGGAGAAATGTCAGAAAAGTTTCGATCA
ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAGTTTATCA
TTTATAGTGACGCATCTCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTGGTGGCC
TATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCATGATCTCGAACTAGCCGC
CATCGTATTTGCTTTGAAAATATGGCGACATTA
Found at i:38076854 original size:37 final size:39
Alignment explanation
Indices: 38076804--38076907 Score: 110
Period size: 37 Copynumber: 2.8 Consensus size: 39
38076794 CAAAAATAAT
* * *
38076804 ATTATTTTTATAGTTTTATATTAAATTTAAT-TT-AA-TG
1 ATTATCTTAATAGTATTATATT-AATTTAATATTAAAGTG
*
38076841 CTTATCTTAATAGTATTATATTAATTTAATATTAAAGTG
1 ATTATCTTAATAGTATTATATTAATTTAATATTAAAGTG
* *
38076880 ATTATCTTAATATTA-AAT-TTAATTTAAT
1 ATTATCTTAATAGTATTATATTAATTTAAT
38076908 GTTTATATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
36 8 0.14
37 30 0.53
38 4 0.07
39 15 0.26
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (39 bp):
ATTATCTTAATAGTATTATATTAATTTAATATTAAAGTG
Found at i:38076883 original size:25 final size:26
Alignment explanation
Indices: 38076847--38076895 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
38076837 AATGCTTATC
38076847 TTAATAGTATTATATTAAT-TTAATA
1 TTAATAGTATTATATTAATATTAATA
*
38076872 TTAA-AGTGATTATCTTAATATTAA
1 TTAATAGT-ATTATATTAATATTAA
38076896 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (26 bp):
TTAATAGTATTATATTAATATTAATA
Found at i:38077007 original size:62 final size:62
Alignment explanation
Indices: 38076886--38077003 Score: 152
Period size: 62 Copynumber: 2.0 Consensus size: 62
38076876 AGTGATTATC
* * * * * *
38076886 TTAATATTAAATTTAATTTAATGTTTATATTATAGATAAACATTTTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATACTATAGACAAAAATTATATTATTTTAATAAGAT
*
38076948 TTAATATTAAATTTAATCTAATATTTAT-CT-T-GACAAAAATTATATTAATTTAATAA
1 TTAATATTAAATTTAATCTAATATTTATACTATAGACAAAAATTATATTATTTTAATAA
38077004 TAAGTGATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.43
60 1 0.02
61 1 0.02
62 26 0.53
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (62 bp):
TTAATATTAAATTTAATCTAATATTTATACTATAGACAAAAATTATATTATTTTAATAAGAT
Found at i:38094138 original size:16 final size:16
Alignment explanation
Indices: 38094112--38094158 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
38094102 TTGCAGGACT
38094112 GAAGC-AAGAAAAATC
1 GAAGCAAAGAAAAATC
* *
38094127 GAAGCAAAGAAAGAGC
1 GAAGCAAAGAAAAATC
*
38094143 AAAGCAAAGCAAAAAT
1 GAAGCAAAG-AAAAAT
38094159 TGATCAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.62, C:0.13, G:0.21, T:0.04
Consensus pattern (16 bp):
GAAGCAAAGAAAAATC
Found at i:38102470 original size:405 final size:406
Alignment explanation
Indices: 38101711--38102930 Score: 2142
Period size: 406 Copynumber: 3.0 Consensus size: 406
38101701 AACTTATTCA
* * *
38101711 TTCCATAGAGTATTTGGCTGCTTATGCTTTCTGAACCTTCGACCATACAATACTTGAAAACTACA
1 TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACCATACAATACTTGAAAACTACA
* * * *
38101776 GTATAGGTCAACTCTATGCACATTTTTAGGGTATTCACCATGTCATAAAGGGTATCATTGTTAGG
66 GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
* *
38101841 TTGCTGATGGAAGGGTCTATATTTCCTGTCATGTTACATTTCATGAAAATGAATTTCCATTTAAA
131 CTGCTGATGGAAGGGTCTATATTTCCTGTCATGTTACATTTCATGAAAATGAATTTCCATTTAAC
* * * * * * *
38101906 ACTCTCCACCCTAAGTCTGCAGCTTCCATGCCTTCTACTTCGCAGTCTAGTTCTAAACTTCTTAT
196 ACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTGT
* * *
38101971 TATGACATCAGTTCATACAACTCAGGGTACTCCAATAGTTAATGTTCCAATGGTTACTAGTGTTA
261 TATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCAATGGTTACTAGTGTTA
*
38102036 ATTCATTGAATGAGGTTCTTGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTCCA
326 ATTCATTGAATGAGGTTATTGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTCCA
38102101 GTTCTAGAAGTTCTAG
391 GTTCTAGAAGTTCTAG
38102117 TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACCATACAATACTTGAAAACTACA
1 TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACCATACAATACTTGAAAACTACA
38102182 GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
66 GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
38102247 CTGCTGATGGAAGGGTCTATATTTCCTGTCATGTTACA-TTCATGAAAATGAATTTCCATTTAAC
131 CTGCTGATGGAAGGGTCTATATTTCCTGTCATGTTACATTTCATGAAAATGAATTTCCATTTAAC
38102311 ACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTGT
196 ACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTGT
* *
38102376 TATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCGATGGTTACTAGTATTA
261 TATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCAATGGTTACTAGTGTTA
*
38102441 ATTCATTGAATGAGGTTATTGTACTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTCCA
326 ATTCATTGAATGAGGTTATTGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTCCA
38102506 GTTCTAGAAGTTCTAG
391 GTTCTAGAAGTTCTAG
* *
38102522 TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACTATACAATACTTTAAAACTACA
1 TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACCATACAATACTTGAAAACTACA
38102587 GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
66 GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
38102652 CTGCTGATGGAAGGGTCTATATTTTCC-GTCATGTTACATTTCATGAAAATGAATTTCCATTTAA
131 CTGCTGATGGAAGGGTCTATA-TTTCCTGTCATGTTACATTTCATGAAAATGAATTTCCATTTAA
38102716 CACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTG
195 CACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTG
38102781 TTATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCAATGGTTACTAGTGTT
260 TTATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCAATGGTTACTAGTGTT
*
38102846 AATTTATTGAATGAGGTTCA-TGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTC
325 AATTCATTGAATGAGGTT-ATTGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTC
*
38102910 TAGTTCTAGAAGGTT-TAG
389 CAGTTCTAGAA-GTTCTAG
38102928 TTC
1 TTC
38102931 TGATAGGCCA
Statistics
Matches: 780, Mismatches: 30, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
405 382 0.49
406 394 0.51
407 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (406 bp):
TTCCTTAGAGTATTTAGCTGCTTATGCTTTCCGAACCTTCGACCATACAATACTTGAAAACTACA
GTATAGGTCAACTCCATGCACATTTTTGGGGTATTCACCATGTTATAAAGGGTATCATTGTCAGG
CTGCTGATGGAAGGGTCTATATTTCCTGTCATGTTACATTTCATGAAAATGAATTTCCATTTAAC
ACTCTCCGCCCCAAATCTGCAGCTTTCATACCTTCTACTTCGCACTCTAGTTCTAAACTTCTTGT
TATGACACCAGTTCATACAGCTCAGGGTACTCCAGTAGTTAATGTTCCAATGGTTACTAGTGTTA
ATTCATTGAATGAGGTTATTGTGCTCAGTGTTGATACTCCACACAGTCCCCTTATGTAAGTTCCA
GTTCTAGAAGTTCTAG
Found at i:38105927 original size:18 final size:18
Alignment explanation
Indices: 38105904--38105941 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
38105894 ATTTTTTTCA
*
38105904 TTGTTGTTTACTGTTGTT
1 TTGTTGTTTACTATTGTT
*
38105922 TTGTTGTTTGCTATTGTT
1 TTGTTGTTTACTATTGTT
38105940 TT
1 TT
38105942 AATGTTGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.05, G:0.21, T:0.68
Consensus pattern (18 bp):
TTGTTGTTTACTATTGTT
Found at i:38105963 original size:11 final size:11
Alignment explanation
Indices: 38105949--38105985 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
38105939 TTTAATGTTG
38105949 TTTTGCTACTA
1 TTTTGCTACTA
*
38105960 TTTTGCTATTA
1 TTTTGCTACTA
*
38105971 TATTGCTACTA
1 TTTTGCTACTA
38105982 TTTT
1 TTTT
38105986 ATTGTTATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.08, T:0.59
Consensus pattern (11 bp):
TTTTGCTACTA
Found at i:38105963 original size:22 final size:22
Alignment explanation
Indices: 38105923--38105991 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
38105913 ACTGTTGTTT
* *
38105923 TGTTG-TTTGCTATTGTTTTAA
1 TGTTGTTTTGCTACTATTTTAA
**
38105944 TGTTGTTTTGCTACTATTTTGC
1 TGTTGTTTTGCTACTATTTTAA
* * * *
38105966 TATTATATTGCTACTATTTTAT
1 TGTTGTTTTGCTACTATTTTAA
38105988 TGTT
1 TGTT
38105992 ATTGTTTGGA
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 5 0.14
22 32 0.86
ACGTcount: A:0.16, C:0.09, G:0.14, T:0.61
Consensus pattern (22 bp):
TGTTGTTTTGCTACTATTTTAA
Found at i:38106851 original size:9 final size:9
Alignment explanation
Indices: 38106830--38107037 Score: 50
Period size: 10 Copynumber: 21.4 Consensus size: 9
38106820 TAATTGATGT
*
38106830 AAAATTATT
1 AAAATTATA
38106839 AAAATTATAAAA
1 AAAATTAT---A
38106851 AAAACTTATA
1 AAAA-TTATA
*
38106861 AATATTAT-
1 AAAATTATA
38106869 AAAA-TATA
1 AAAATTATA
**
38106877 ATAAATTCCA
1 A-AAATTATA
38106887 ATAAATTATA
1 A-AAATTATA
38106897 AAAA-TAT-
1 AAAATTATA
38106904 -AAATTAATA
1 AAAATT-ATA
* *
38106913 AAACTTATTT
1 AAAATTA-TA
*
38106923 AAAATCTTTA
1 AAAAT-TATA
* *
38106933 AAATTTTAAA
1 AAA-ATTATA
*
38106943 AAAACTTATT
1 AAAA-TTATA
* *
38106953 AGAATTCTTA
1 AAAATT-ATA
38106963 AAATATTATAAA
1 AAA-ATTAT--A
38106975 AAAATTTATAA
1 AAAA-TTAT-A
*
38106986 AAAAGTATTA
1 AAAATTA-TA
*
38106996 AAAA-TATT
1 AAAATTATA
38107004 AAAATTGATA
1 AAAATT-ATA
*
38107014 TAAACTTATA
1 -AAAATTATA
38107024 AAAATTATA
1 AAAATTATA
38107033 TAAAA
1 -AAAA
38107038 AAAATCATAA
Statistics
Matches: 146, Mismatches: 28, Indels: 49
0.65 0.13 0.22
Matches are distributed among these distances:
6 3 0.02
7 4 0.03
8 14 0.10
9 32 0.22
10 59 0.40
11 18 0.12
12 12 0.08
13 4 0.03
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (9 bp):
AAAATTATA
Found at i:38106867 original size:22 final size:21
Alignment explanation
Indices: 38106830--38106872 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
38106820 TAATTGATGT
38106830 AAAATTATTAAAATTATAAAA
1 AAAATTATTAAAATTATAAAA
38106851 AAAACTTA-TAAATATTATAAAA
1 AAAA-TTATTAAA-ATTATAAAA
38106873 TATAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAATTATTAAAATTATAAAA
Found at i:38106950 original size:31 final size:32
Alignment explanation
Indices: 38106907--38106983 Score: 88
Period size: 31 Copynumber: 2.4 Consensus size: 32
38106897 AAAATATAAA
*
38106907 TTAATAAAACTTATTTAAAA-TCTTTAAAAT-T
1 TTAAAAAAACTTATTTAAAATTC-TTAAAATAT
*
38106938 TTAAAAAAACTTA-TTAGAATTCTTAAAATAT
1 TTAAAAAAACTTATTTAAAATTCTTAAAATAT
*
38106969 TATAAAAAAATTTAT
1 T-TAAAAAAACTTAT
38106984 AAAAAAGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
30 12 0.31
31 16 0.41
32 11 0.28
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (32 bp):
TTAAAAAAACTTATTTAAAATTCTTAAAATAT
Found at i:38106966 original size:30 final size:31
Alignment explanation
Indices: 38106907--38106988 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
38106897 AAAATATAAA
*
38106907 TTAATAAAACTTATTTAAAATCTTTAAAAT-T
1 TTAAAAAAACTTA-TTAAAATCTTTAAAATAT
*
38106938 TTAAAAAAACTTATTAGAAT-TCTTAAAATAT
1 TTAAAAAAACTTATTAAAATCT-TTAAAATAT
* *
38106969 TATAAAAAAATTTATAAAAA
1 T-TAAAAAAACTTATTAAAA
38106989 AGTATTAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 1 0.02
30 13 0.30
31 14 0.33
32 15 0.35
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (31 bp):
TTAAAAAAACTTATTAAAATCTTTAAAATAT
Found at i:38106987 original size:11 final size:13
Alignment explanation
Indices: 38106962--38106999 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
38106952 TAGAATTCTT
38106962 AAAATATTATAAA
1 AAAATATTATAAA
38106975 AAAAT-TTATAAA
1 AAAATATTATAAA
*
38106987 AAAGTATTA-AAA
1 AAAATATTATAAA
38106999 A
1 A
38107000 TATTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AAAATATTATAAA
Found at i:38107017 original size:11 final size:10
Alignment explanation
Indices: 38106975--38107037 Score: 51
Period size: 9 Copynumber: 6.4 Consensus size: 10
38106965 ATATTATAAA
*
38106975 AAAATTTATAA
1 AAAA-TTATAT
*
38106986 AAAAGTAT-T
1 AAAATTATAT
*
38106995 AAAAATAT-T
1 AAAATTATAT
38107004 AAAATTGATAT
1 AAAATT-ATAT
*
38107015 AAACTTATA-
1 AAAATTATAT
38107024 AAAATTATAT
1 AAAATTATAT
38107034 AAAA
1 AAAA
38107038 AAAATCATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
9 21 0.49
10 12 0.28
11 10 0.23
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (10 bp):
AAAATTATAT
Found at i:38107017 original size:20 final size:19
Alignment explanation
Indices: 38106961--38107038 Score: 59
Period size: 20 Copynumber: 3.9 Consensus size: 19
38106951 TTAGAATTCT
*
38106961 TAAAATATTATAAAAAAATTTA
1 TAAAA-ATTATATAAAAA--TA
*
38106983 TAAAAAAGTAT-TAAAAATA
1 T-AAAAATTATATAAAAATA
* **
38107002 TTAAAATTGATATAAACTTA
1 TAAAAATT-ATATAAAAATA
38107022 TAAAAATTATATAAAAA
1 TAAAAATTATATAAAAA
38107039 AAATCATAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
18 5 0.11
19 12 0.27
20 13 0.30
21 5 0.11
22 5 0.11
23 4 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAAATTATATAAAAATA
Found at i:38107497 original size:21 final size:22
Alignment explanation
Indices: 38107460--38107504 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
38107450 TATAACTTTA
*
38107460 TATCAATTTTAATACTTTTTTT
1 TATCAAATTTAATACTTTTTTT
38107482 TATCAAATTT-ATACTTTTTTT
1 TATCAAATTTAATACTTTTTTT
38107503 TA
1 TA
38107505 AAAATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (22 bp):
TATCAAATTTAATACTTTTTTT
Found at i:38107509 original size:20 final size:21
Alignment explanation
Indices: 38107471--38107509 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38107461 ATCAATTTTA
*
38107471 ATACTTTTTTTTATCAAATTT
1 ATACTTTTTTTTATAAAATTT
38107492 ATACTTTTTTTTA-AAAAT
1 ATACTTTTTTTTATAAAAT
38107510 AATTTTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (21 bp):
ATACTTTTTTTTATAAAATTT
Found at i:38107568 original size:21 final size:21
Alignment explanation
Indices: 38107529--38107568 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38107519 GATTTGTATG
* * *
38107529 GTTTTTATAGAGTTTTAATAC
1 GTTTTTATAAAATTATAATAC
38107550 GTTTTTATAAAATTATAAT
1 GTTTTTATAAAATTATAAT
38107569 TATGTTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.53
Consensus pattern (21 bp):
GTTTTTATAAAATTATAATAC
Found at i:38108932 original size:26 final size:26
Alignment explanation
Indices: 38108898--38108950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38108888 TTAATTTTTT
*
38108898 AAAATGAAAAATATTAAAAAATTATA
1 AAAAAGAAAAATATTAAAAAATTATA
* *
38108924 AAAAAGAAAAATATTATAATATTATA
1 AAAAAGAAAAATATTAAAAAATTATA
38108950 A
1 A
38108951 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (26 bp):
AAAAAGAAAAATATTAAAAAATTATA
Found at i:38108977 original size:18 final size:19
Alignment explanation
Indices: 38108905--38108979 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 19
38108895 TTTAAAATGA
* *
38108905 AAAATATTAAAAAATTA-T
1 AAAATAATATAAAATTATT
*
38108923 AAAA-AAGA-AAAA-TATT
1 AAAATAATATAAAATTATT
* * *
38108939 ATAATATTAT-AATTTATT
1 AAAATAATATAAAATTATT
38108957 AAAATAATATAAAATTA-T
1 AAAATAATATAAAATTATT
38108975 AAAAT
1 AAAAT
38108980 CGATTACCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
15 2 0.05
16 8 0.19
17 6 0.14
18 22 0.51
19 5 0.12
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (19 bp):
AAAATAATATAAAATTATT
Found at i:38113843 original size:10 final size:10
Alignment explanation
Indices: 38113828--38113865 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
38113818 TTTAATTTTT
38113828 TTAAAAATTA
1 TTAAAAATTA
*
38113838 TT-AAAACTA
1 TTAAAAATTA
*
38113847 TAAAAAATTA
1 TTAAAAATTA
38113857 TTAAAAATT
1 TTAAAAATT
38113866 CGAGTTCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:38114146 original size:20 final size:21
Alignment explanation
Indices: 38114073--38114143 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
38114063 ACTAGTTCAC
*
38114073 AATTTTTAAATAGTGGTTTAT
1 AATTTTTAAATAATGGTTTAT
** **
38114094 AATTTTT-AATAATTATTTGC
1 AATTTTTAAATAATGGTTTAT
*
38114114 AGTTTTTAAATAATGGTTTAT
1 AATTTTTAAATAATGGTTTAT
38114135 AATTTTTAA
1 AATTTTTAA
38114144 TAAATTTGTA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
20 14 0.37
21 24 0.63
ACGTcount: A:0.35, C:0.01, G:0.10, T:0.54
Consensus pattern (21 bp):
AATTTTTAAATAATGGTTTAT
Found at i:38114166 original size:41 final size:41
Alignment explanation
Indices: 38114071--38114166 Score: 133
Period size: 41 Copynumber: 2.3 Consensus size: 41
38114061 CCACTAGTTC
*
38114071 ACAATTTTTAAATAGTGGTTTATAATTTTTAATAATTATTTG
1 ACAATTTTTAAATAATGGTTTATAATTTTTAATAA-TATTTG
*
38114113 -CAGTTTTTAAATAATGGTTTATAATTTTTAATAA-ATTTG
1 ACAATTTTTAAATAATGGTTTATAATTTTTAATAATATTTG
*
38114152 TACAATTTTAAAATA
1 -ACAATTTTTAAATA
38114167 TTTTAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.10
41 43 0.90
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (41 bp):
ACAATTTTTAAATAATGGTTTATAATTTTTAATAATATTTG
Found at i:38114617 original size:5 final size:6
Alignment explanation
Indices: 38114599--38114624 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
38114589 ATGGTTCTCA
38114599 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
38114625 TTATCATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:38116882 original size:20 final size:19
Alignment explanation
Indices: 38116857--38116898 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
38116847 AACATAATCG
* *
38116857 TATATAATATATATTTTTAT
1 TATATAAT-TACATATTTAT
38116877 TATATAATTACATATTTAT
1 TATATAATTACATATTTAT
38116896 TAT
1 TAT
38116899 TTTATTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATAATTACATATTTAT
Found at i:38116943 original size:19 final size:19
Alignment explanation
Indices: 38116914--38116957 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
38116904 TTATATAAAT
* *
38116914 AAAAT-AATTAATAATTAA
1 AAAATAAATTAAAAATGAA
38116932 AAAATAAATTAAAAATGAA
1 AAAATAAATTAAAAATGAA
38116951 AACAATA
1 AA-AATA
38116958 TACTTATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 13 0.59
20 4 0.18
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAATAAATTAAAAATGAA
Found at i:38117175 original size:36 final size:36
Alignment explanation
Indices: 38117128--38117198 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
38117118 AACGTGTTTT
* *
38117128 GTAGAAAGTGTTTTCTAACATGTCAACTGAGAACGC
1 GTAGAAAGTGTTTTCCAACATGTCAACTGAAAACGC
* *
38117164 GTAGAAAGTGTTTTCCAATATGTCAGCTGAAAACG
1 GTAGAAAGTGTTTTCCAACATGTCAACTGAAAACG
38117199 GTTCCTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (36 bp):
GTAGAAAGTGTTTTCCAACATGTCAACTGAAAACGC
Found at i:38118144 original size:44 final size:44
Alignment explanation
Indices: 38118094--38118181 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
38118084 AATTTTAAAA
* *
38118094 AATAGAAGTTGTGATAATTATACATCTAAAAATAATTATAATTT
1 AATAGAAGTTGTGATAATTACACATCTAAAAATAATTAGAATTT
* *
38118138 AATAGAAGTTGTGATAATTGCACATTTAAAAATAATTAGAATTT
1 AATAGAAGTTGTGATAATTACACATCTAAAAATAATTAGAATTT
38118182 CCTTTCAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.38
Consensus pattern (44 bp):
AATAGAAGTTGTGATAATTACACATCTAAAAATAATTAGAATTT
Found at i:38125341 original size:38 final size:38
Alignment explanation
Indices: 38125294--38125370 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
38125284 GATAACTCCA
*
38125294 CAATCCCATATTTTCCTCCTAAAGTCACTCCAACACTC
1 CAATCCCATATTTTCCTCCTAAAATCACTCCAACACTC
38125332 CAATCCCATATTTTCCTCCTAAAATCACTCCAACACTC
1 CAATCCCATATTTTCCTCCTAAAATCACTCCAACACTC
38125370 C
1 C
38125371 CCCACCACGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.30, C:0.40, G:0.01, T:0.29
Consensus pattern (38 bp):
CAATCCCATATTTTCCTCCTAAAATCACTCCAACACTC
Found at i:38131681 original size:82 final size:82
Alignment explanation
Indices: 38131593--38131939 Score: 482
Period size: 82 Copynumber: 4.2 Consensus size: 82
38131583 CCGGCTTGTG
*
38131593 GCTTGCTAGACTTAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
1 GCTTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
*
38131658 CATTTCACTGGCATCAA
66 CATTTCACTAGCATCAA
** * * *
38131675 GCTTGCTAGATGTAAAGTCTGAAACATTTCACTGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
1 GCTTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
* *
38131740 CATTTCTCCAGCATCAA
66 CATTTCACTAGCATCAA
* * * *
38131757 GCTTGCTAGACATAAAGTTCAAAATATTTCACCGACATCAAGCCTGCTAGATGTAAAGTCTGAAA
1 GCTTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
38131822 CATTTCACTAGCATCAA
66 CATTTCACTAGCATCAA
* * ** *
38131839 GCCTGCTAGACATAAAGTTCGAAATATTTCATTGGCATCAAGCCTGCTAGATGTAAAGTCT-ATA
1 GCTTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGA-A
38131903 ACATTTCACCT-GCATCAA
65 ACATTTCA-CTAGCATCAA
* *
38131921 GCCTGCTAGACGTAAAGTC
1 GCTTGCTAGACATAAAGTC
38131940 TAAATCATCT
Statistics
Matches: 237, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
81 1 0.00
82 234 0.99
83 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (82 bp):
GCTTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAA
CATTTCACTAGCATCAA
Found at i:38131941 original size:41 final size:41
Alignment explanation
Indices: 38131596--38131940 Score: 437
Period size: 41 Copynumber: 8.4 Consensus size: 41
38131586 GCTTGTGGCT
* * * *
38131596 TGCTAGACTTAAAGTCCGAAATATTTCACCGGCATCAAGCC
1 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
*
38131637 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCT
1 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
*
38131678 TGCTAGATGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
1 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
* ** *
38131719 TGCTAGACGTAAAGTCTGAAACATTTCTCCAGCATCAAGCT
1 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
* * * * *
38131760 TGCTAGACATAAAGT-TCAAAATATTTCACCGACATCAAGCC
1 TGCTAGACGTAAAGTCT-GAAACATTTCACTGGCATCAAGCC
* *
38131801 TGCTAGATGTAAAGTCTGAAACATTTCACTAGCATCAAGCC
1 TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
* * *
38131842 TGCTAGACATAAAGT-TCGAAATATTTCATTGGCATCAAGCC
1 TGCTAGACGTAAAGTCT-GAAACATTTCACTGGCATCAAGCC
*
38131883 TGCTAGATGTAAAGTCT-ATAACATTTCACCT-GCATCAAGCC
1 TGCTAGACGTAAAGTCTGA-AACATTTCA-CTGGCATCAAGCC
38131924 TGCTAGACGTAAAGTCT
1 TGCTAGACGTAAAGTCT
38131941 AAATCATCTT
Statistics
Matches: 262, Mismatches: 36, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
40 3 0.01
41 256 0.98
42 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (41 bp):
TGCTAGACGTAAAGTCTGAAACATTTCACTGGCATCAAGCC
Found at i:38134742 original size:57 final size:58
Alignment explanation
Indices: 38134667--38134786 Score: 181
Period size: 57 Copynumber: 2.1 Consensus size: 58
38134657 TTCAGGTCAT
*
38134667 TTTCATTTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTTC-ATTTCTCCA
1 TTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCCA
** *
38134724 TGTTCA-TTTTCATTTTGGAGAAAACCTTAATCATTTCCAAATGTTTTCTATTTCTCCA
1 T-TTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCCA
38134782 TTTCA
1 TTTCA
38134787 CCATTTTTGT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
57 43 0.75
58 14 0.25
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.46
Consensus pattern (58 bp):
TTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGATTTCTATTTCTCCA
Found at i:38141106 original size:29 final size:30
Alignment explanation
Indices: 38141074--38141159 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 30
38141064 TGCACCACCC
38141074 TTTTAAAAATTTTATAGTTTTGCCACTGGT
1 TTTTAAAAATTTTATAGTTTTGCCACTGGT
** * * *
38141104 TTTTTTAGATTTTACAATTTTGCCACTGG-
1 TTTTAAAAATTTTATAGTTTTGCCACTGGT
**
38141133 TTTTCCAAATTTTATAGTTTTGCCACT
1 TTTTAAAAATTTTATAGTTTTGCCACT
38141160 ATTTTTCCAG
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
29 22 0.48
30 24 0.52
ACGTcount: A:0.23, C:0.14, G:0.12, T:0.51
Consensus pattern (30 bp):
TTTTAAAAATTTTATAGTTTTGCCACTGGT
Found at i:38141165 original size:29 final size:29
Alignment explanation
Indices: 38141080--38141214 Score: 135
Period size: 29 Copynumber: 4.6 Consensus size: 29
38141070 ACCCTTTTAA
* * * **
38141080 AAATTTTATAGTTTTGCCACTGGTTTTTTT
1 AAATTTTACAATTTTGCCACT-ATTTTTCC
* **
38141110 AGATTTTACAATTTTGCCACTGGTTTTCC
1 AAATTTTACAATTTTGCCACTATTTTTCC
* *
38141139 AAATTTTATAGTTTTGCCACTATTTTTCC
1 AAATTTTACAATTTTGCCACTATTTTTCC
* * * *
38141168 AGATTTTACAATTCTACCACTATTTTTCA
1 AAATTTTACAATTTTGCCACTATTTTTCC
38141197 AAATTTTACAATTTTGCC
1 AAATTTTACAATTTTGCC
38141215 CAAAATTTTC
Statistics
Matches: 85, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
29 67 0.79
30 18 0.21
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.49
Consensus pattern (29 bp):
AAATTTTACAATTTTGCCACTATTTTTCC
Found at i:38141188 original size:58 final size:59
Alignment explanation
Indices: 38141074--38141214 Score: 176
Period size: 58 Copynumber: 2.4 Consensus size: 59
38141064 TGCACCACCC
* * ** * * *
38141074 TTTTAAAAATTTTATAGTTTTGCCACTGGTTTTTTTAGATTTTACAATTTTGCCACTGG
1 TTTTCAAAATTTTATAGTTTTGCCACTGATTTTTCCAGATTTTACAATTCTACCACTAG
* *
38141133 TTTTCCAAATTTTATAGTTTTGCCACT-ATTTTTCCAGATTTTACAATTCTACCACTAT
1 TTTTCAAAATTTTATAGTTTTGCCACTGATTTTTCCAGATTTTACAATTCTACCACTAG
* *
38141191 TTTTCAAAATTTTACAATTTTGCC
1 TTTTCAAAATTTTATAGTTTTGCC
38141215 CAAAATTTTC
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
58 45 0.64
59 25 0.36
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.50
Consensus pattern (59 bp):
TTTTCAAAATTTTATAGTTTTGCCACTGATTTTTCCAGATTTTACAATTCTACCACTAG
Found at i:38142305 original size:37 final size:37
Alignment explanation
Indices: 38142248--38142348 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 37
38142238 TATTGAATTG
** *
38142248 ATTGATATGCGAAACCGTTTGTTATTATGTTAAATAA
1 ATTGATATGCGAAATTGTTTGTTATTATATTAAATAA
* * * * **
38142285 ATTGATATGCAAAATTGTTTGTCATTGTATTGAATTG
1 ATTGATATGCGAAATTGTTTGTTATTATATTAAATAA
* *
38142322 ATTGACATGTGAAATTGTTTGTTATTA
1 ATTGATATGCGAAATTGTTTGTTATTA
38142349 CTTTACATAT
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.45
Consensus pattern (37 bp):
ATTGATATGCGAAATTGTTTGTTATTATATTAAATAA
Found at i:38143926 original size:23 final size:23
Alignment explanation
Indices: 38143887--38143932 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
38143877 ACTTAAATCA
*
38143887 TTTCTCTCAAATTCTCTCATATT
1 TTTCTCTCAAATGCTCTCATATT
38143910 TTTCTC-CAATATGCTCTCATATT
1 TTTCTCTCAA-ATGCTCTCATATT
38143933 CCCCTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.22, C:0.26, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTCTCTCAAATGCTCTCATATT
Found at i:38143957 original size:11 final size:11
Alignment explanation
Indices: 38143890--38143957 Score: 57
Period size: 11 Copynumber: 6.2 Consensus size: 11
38143880 TAAATCATTT
38143890 CTCTCAAATT-
1 CTCTCAAATTC
* *
38143900 CTCTCATATTT
1 CTCTCAAATTC
* * *
38143911 TTCTCCAATATG
1 CTCTCAAAT-TC
*
38143923 CTCTCATATTC
1 CTCTCAAATTC
*
38143934 CCCTCAAATTC
1 CTCTCAAATTC
38143945 CTCTCAAATTC
1 CTCTCAAATTC
38143956 CT
1 CT
38143958 ATTAAATCTC
Statistics
Matches: 44, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 9 0.20
11 28 0.64
12 7 0.16
ACGTcount: A:0.24, C:0.34, G:0.01, T:0.41
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:38144546 original size:10 final size:10
Alignment explanation
Indices: 38144531--38144598 Score: 55
Period size: 11 Copynumber: 6.3 Consensus size: 10
38144521 CTTAAATCAT
38144531 TTCTCTCAAA
1 TTCTCTCAAA
*
38144541 TTCTCTCATAT
1 TTCTCTCA-AA
*
38144552 TTTTCTCCAATA
1 TTCTCT-CAA-A
*
38144564 TTCTCTCATAT
1 TTCTCTCA-AA
*
38144575 TTCCCTCAAA
1 TTCTCTCAAA
38144585 TTCCTCTCAAA
1 TT-CTCTCAAA
38144596 TTC
1 TTC
38144599 CTATTAAATC
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
10 12 0.27
11 25 0.56
12 8 0.18
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.46
Consensus pattern (10 bp):
TTCTCTCAAA
Found at i:38144557 original size:23 final size:21
Alignment explanation
Indices: 38144529--38144593 Score: 85
Period size: 23 Copynumber: 3.0 Consensus size: 21
38144519 CACTTAAATC
38144529 ATTTCTCTCAAATTCTCTCAT
1 ATTTCTCTCAAATTCTCTCAT
*
38144550 ATTTTTCTCCAATATTCTCTCAT
1 ATTTCTCT-CAA-ATTCTCTCAT
*
38144573 ATTTCCCTCAAATTCCTCTCA
1 ATTTCTCTCAAATT-CTCTCA
38144594 AATTCCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 10 0.26
22 12 0.32
23 16 0.42
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTTCTCTCAAATTCTCTCAT
Found at i:38144600 original size:643 final size:644
Alignment explanation
Indices: 38143373--38144649 Score: 2475
Period size: 643 Copynumber: 2.0 Consensus size: 644
38143363 TAAGGTTAAA
38143373 GCTTCCAAAACCCTAAATAACGTTAACCTTCTTTTGTTTCTATTTGCTTCGGGTGAGTGGGGAAG
1 GCTTCCAAAACCCTAAATAACGTTAACCTTCTTTTGTTTCTATTTGCTTCGGGTGAGTGGGGAAG
38143438 AAGATAATATCATTCCTTCCCCACTAACTTGATAATAATAAAAAATTATAATTTATATATTTCTT
66 AAGATAATATCATTCCTTCCCCACTAACTTGATAATAATAAAAAATTATAATTTATATATTTCTT
38143503 TTTTTTTCTTTTCTTTTAATTAATTTAAATCATATTTTATATTGGGCAAAATACCAATAAAAGCC
131 TTTTTTTCTTTTCTTTTAATTAATTTAAATCATATTTTATATTGGGCAAAATACCAATAAAAGCC
38143568 CTTTTTTTAAAATTACTGAAAATAGGCCCGGTAAAAATTTAATTATCGGAATGGCCCAATTCCCA
196 CTTTTTTTAAAATTACTGAAAATAGGCCCGGTAAAAATTTAATTATCGGAATGGCCCAATTCCCA
*
38143633 AAAAATGCATCCACGTCAGCGCTTTGTCAGGTGACAAAGTAGGAAAATGCTTCCTCAAGGAAGCG
261 AAAAATGCATCCACGTCAGCGCGTTGTCAGGTGACAAAGTAGGAAAATGCTTCCTCAAGGAAGCG
38143698 CTTTGTCCACGTGGAATGAAAACGCGTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACAAAGTGC
326 CTTTGTCCACGTGGAATGAAAACGCGTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACAAAGTGC
38143763 TTCCACGTCATCGCGTTTTCCCTGTGTCACTACAGTACTAACGGTCAAAAAAATAGCCGTTGGTA
391 TTCCACGTCATCGCGTTTTCCCTGTGTCACTACAGTACTAACGGTCAAAAAAATAGCCGTTGGTA
38143828 CCCCCAAACGGTAAAAAAAAACTATAAAACCCCATTTCTTTTTTTTCACACTTAAATCATTTCTC
456 CCCCCAAACGGTAAAAAAAAACTATAAAACCCCATTTCTTTTTTTTCACACTTAAATCATTTCTC
38143893 TCAAATTCTCTCATATTTTTCTCCAATATGCTCTCATATTCCCCTCAAATTCCTCTCAAATTCCT
521 TCAAATTCTCTCATATTTTTCTCCAATATGCTCTCATATTCCCCTCAAATTCCTCTCAAATTCCT
38143958 ATTAAATCTCTCTTTAATTATTTTTAAAAAAGCTCTAATTTTATTTTTTGTTTCTATTT
586 ATTAAATCTCTCTTTAATTATTTTTAAAAAAGCTCTAATTTTATTTTTTGTTTCTATTT
38144017 GCTTCCAAAACCCTAAATAACGTTAACCTTCTTTTGTTTCTATTTGCTTCGGGTGAGTGGGGAAG
1 GCTTCCAAAACCCTAAATAACGTTAACCTTCTTTTGTTTCTATTTGCTTCGGGTGAGTGGGGAAG
* * *
38144082 AAGATAATATCATTCCTTCCCCACTAACTTGATAATAATATAAAATTCTAATTTATTTATTTC-T
66 AAGATAATATCATTCCTTCCCCACTAACTTGATAATAATAAAAAATTATAATTTATATATTTCTT
38144146 TTTTTTTCTTTTCTTTTAATTAATTTAAATCATATTTTATATTGGGCAAAATACCAATAAAAGCC
131 TTTTTTTCTTTTCTTTTAATTAATTTAAATCATATTTTATATTGGGCAAAATACCAATAAAAGCC
*
38144211 TTTTTTTTAAAATTACTGAAAATAGGCCCGGTAAAAATTTAATTATCGGAATGGCCCAATTCCCA
196 CTTTTTTTAAAATTACTGAAAATAGGCCCGGTAAAAATTTAATTATCGGAATGGCCCAATTCCCA
38144276 AAAAATGCATCCACGTCAGCGCGTTGTCAGGTGACAAAGTAGGAAAATGCTTCCTCAAGGAAGCG
261 AAAAATGCATCCACGTCAGCGCGTTGTCAGGTGACAAAGTAGGAAAATGCTTCCTCAAGGAAGCG
38144341 CTTTGTCCACGTGGAATGAAAACGCGTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACAAAGTGC
326 CTTTGTCCACGTGGAATGAAAACGCGTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACAAAGTGC
38144406 TTCCACGTCATCGCGTTTTCCCTGTGTCACTACAGTACTAACGGTCAAAAAAATAGCCGTTGGTA
391 TTCCACGTCATCGCGTTTTCCCTGTGTCACTACAGTACTAACGGTCAAAAAAATAGCCGTTGGTA
*
38144471 CCCCCAAACGGTAAAAAAAAACTATAAAACCCCCTTTCTTTTTTTTCACACTTAAATCATTTCTC
456 CCCCCAAACGGTAAAAAAAAACTATAAAACCCCATTTCTTTTTTTTCACACTTAAATCATTTCTC
* *
38144536 TCAAATTCTCTCATATTTTTCTCCAATATTCTCTCATATTTCCCTCAAATTCCTCTCAAATTCCT
521 TCAAATTCTCTCATATTTTTCTCCAATATGCTCTCATATTCCCCTCAAATTCCTCTCAAATTCCT
38144601 ATTAAATCTCTCTTTAATTATTTTTAAAAAAGCTCTAATTTTATTTTTT
586 ATTAAATCTCTCTTTAATTATTTTTAAAAAAGCTCTAATTTTATTTTTT
38144650 TTGAAATTTT
Statistics
Matches: 625, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
643 500 0.80
644 125 0.20
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (644 bp):
GCTTCCAAAACCCTAAATAACGTTAACCTTCTTTTGTTTCTATTTGCTTCGGGTGAGTGGGGAAG
AAGATAATATCATTCCTTCCCCACTAACTTGATAATAATAAAAAATTATAATTTATATATTTCTT
TTTTTTTCTTTTCTTTTAATTAATTTAAATCATATTTTATATTGGGCAAAATACCAATAAAAGCC
CTTTTTTTAAAATTACTGAAAATAGGCCCGGTAAAAATTTAATTATCGGAATGGCCCAATTCCCA
AAAAATGCATCCACGTCAGCGCGTTGTCAGGTGACAAAGTAGGAAAATGCTTCCTCAAGGAAGCG
CTTTGTCCACGTGGAATGAAAACGCGTCCTTGAGGGCGCGCTTTGTGTCCACGTGGACAAAGTGC
TTCCACGTCATCGCGTTTTCCCTGTGTCACTACAGTACTAACGGTCAAAAAAATAGCCGTTGGTA
CCCCCAAACGGTAAAAAAAAACTATAAAACCCCATTTCTTTTTTTTCACACTTAAATCATTTCTC
TCAAATTCTCTCATATTTTTCTCCAATATGCTCTCATATTCCCCTCAAATTCCTCTCAAATTCCT
ATTAAATCTCTCTTTAATTATTTTTAAAAAAGCTCTAATTTTATTTTTTGTTTCTATTT
Found at i:38146433 original size:18 final size:18
Alignment explanation
Indices: 38146397--38146439 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
38146387 TGCCAGGTGC
* * *
38146397 GTATCCTAGCTCTTTTAT
1 GTATCCTAACCCTTATAT
38146415 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
38146433 GTTTCCT
1 GTATCCT
38146440 TTTTCTAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:38152501 original size:50 final size:50
Alignment explanation
Indices: 38152421--38152712 Score: 340
Period size: 50 Copynumber: 5.9 Consensus size: 50
38152411 CATTTGGGTA
* * *
38152421 AAGAAGTCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACTGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
38152471 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
38152521 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * *
38152571 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * * * * *
38152621 GAGAACTCCCATGTAAGACCATATCTTGGATATGGCATTGGTA--GTACAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGAT
*
38152670 GAAGCA--TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -AAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
38152713 TGTTATTATC
Statistics
Matches: 212, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
48 1 0.00
49 35 0.17
50 175 0.83
51 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:38156439 original size:126 final size:126
Alignment explanation
Indices: 38156214--38156505 Score: 480
Period size: 126 Copynumber: 2.3 Consensus size: 126
38156204 GCCAAATAGC
* *
38156214 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
1 AACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAAAGCATCC
* *
38156279 TTCTTAAAGCGTTTTTGACACTATTTCCTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
66 TTCTTAAAGCATTTTTGAAACTATTTCCTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
* *
38156340 AACTACTGTAGCAAAAGAGCATCTACGTGGGAGCTTTTTTTAGTACTTTTGCTGACAAAGCAT-C
1 AACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAAAGCATCC
* *
38156404 TTGCTTAAAGCATTTTTGAAACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTCAGG
66 TT-CTTAAAGCATTTTTGAAACTATTTCCTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
38156466 AACTACTGTAGCAAAAGAG-AGTCCACGTGGGAGCTTTTTT
1 AACTACTGTAGCAAAAGAGCA-TCCACGTGGGAGCTTTTTT
38156506 AAATTAACAA
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
125 4 0.03
126 151 0.97
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (126 bp):
AACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAAAGCATCC
TTCTTAAAGCATTTTTGAAACTATTTCCTCAGAAACGTCTTCTCAAAATTATTTTTTCAGG
Found at i:38156708 original size:96 final size:96
Alignment explanation
Indices: 38156538--38156848 Score: 331
Period size: 96 Copynumber: 3.2 Consensus size: 96
38156528 AGCAACCCTA
* * *
38156538 AACCCCAAACCCTAATTTATTTGAATTTTTTTCCTTAAACTCTAAACTC-TAAACCCTAAACCCT
1 AACCCTAAACCCTAATTTAATTG-A-TTTTTTCCTT-AA----AAAC-CATAAACACTAAACCCT
*
38156602 AATCTAATTTTTTTAAAATTTATAATTAATTTACTCAAGT
58 AATCT-ATTTTTTAAAAATTTATAATTAATTTACTCAAGT
* * * * *
38156642 AACCCTAAACCCTAATTTATTTTA-TTTTTCCTTAAAAACCCTTAACACTAAACCCTAATATGAT
1 AACCCTAAACCCTAATTTAATTGATTTTTTCCTTAAAAACCATAAACACTAAACCCTAATCT-AT
*
38156706 TTTTTAAAAATTTATAATTAAATTACTCAAGT
65 TTTTTAAAAATTTATAATTAATTTACTCAAGT
* * * * *
38156738 AACCTTAAACTCTAATTTAATTGATTTTTTCCTTAAAAATCATAAACACGAAACCCTAATCTAAT
1 AACCCTAAACCCTAATTTAATTGATTTTTTCCTTAAAAACCATAAACACTAAACCCTAATCTATT
* * * *
38156803 TTTGAAAAATTTATAATTAATTCAATTAAG-
66 TTTTAAAAATTTATAATTAATTTACTCAAGT
38156833 AAGCCCTAAACCCTAA
1 AA-CCCTAAACCCTAA
38156849 ACCCTTATTT
Statistics
Matches: 179, Mismatches: 25, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
95 3 0.02
96 111 0.62
97 32 0.18
100 2 0.01
101 9 0.05
103 1 0.01
104 21 0.12
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTAATTGATTTTTTCCTTAAAAACCATAAACACTAAACCCTAATCTATT
TTTTAAAAATTTATAATTAATTTACTCAAGT
Found at i:38156940 original size:27 final size:29
Alignment explanation
Indices: 38156883--38156937 Score: 87
Period size: 27 Copynumber: 1.9 Consensus size: 29
38156873 TTAAACCCAA
38156883 AAACCCAAAAACTCCAAAACCCTACCCCT
1 AAACCCAAAAACTCCAAAACCCTACCCCT
38156912 AAACCC-AAAA-TCCAAAACCCTGACCC
1 AAACCCAAAAACTCCAAAACCCT-ACCC
38156938 TAACACAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 11 0.44
28 8 0.32
29 6 0.24
ACGTcount: A:0.45, C:0.44, G:0.02, T:0.09
Consensus pattern (29 bp):
AAACCCAAAAACTCCAAAACCCTACCCCT
Found at i:38161902 original size:21 final size:21
Alignment explanation
Indices: 38161876--38161916 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
38161866 ATCTGCTCAA
* *
38161876 ACTCCAACTGTTTTGGAGTAC
1 ACTCCAACTGCTGTGGAGTAC
*
38161897 ACTCCACCTGCTGTGGAGTA
1 ACTCCAACTGCTGTGGAGTA
38161917 TTGCTCGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCAACTGCTGTGGAGTAC
Found at i:38167325 original size:86 final size:85
Alignment explanation
Indices: 38167235--38167433 Score: 197
Period size: 86 Copynumber: 2.3 Consensus size: 85
38167225 TTAAAGGTGT
* * *
38167235 AAAAAGTCCTCAAATTTTTTTTCAAAAAAAGCAATTAAG-CTTTTTTTTTTGCACTCAATTGAGC
1 AAAAAGCCCTCAAA-TTTTTTTCAAAAAAAGCAATTAAGACCTGTTTTTTT-CACTCAATTGAGC
*
38167299 ACTTGAACTTTCAAAATGCATC
64 ACTTGAACTTTCAAAATGCAAC
** *** * * * *
38167321 AAAAAGGCTTTC-AAGCATTTTCAAGAAAAGCAATTACGCACCTGTTTTTTTCACTCAATTGGGT
1 AAAAA-GCCCTCAAATTTTTTTCAAAAAAAGCAATTAAG-ACCTGTTTTTTTCACTCAATTGAGC
*
38167385 ACTTGAACTTTCAAAATGTAAC
64 ACTTGAACTTTCAAAATGCAAC
*
38167407 AAAAAGACCCTCAAAATTTTTT-AAAAA
1 AAAAAG-CCCTCAAATTTTTTTCAAAAA
38167434 TATAATTACG
Statistics
Matches: 88, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
85 20 0.23
86 50 0.57
87 18 0.20
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (85 bp):
AAAAAGCCCTCAAATTTTTTTCAAAAAAAGCAATTAAGACCTGTTTTTTTCACTCAATTGAGCAC
TTGAACTTTCAAAATGCAAC
Found at i:38167350 original size:85 final size:85
Alignment explanation
Indices: 38167253--38167412 Score: 223
Period size: 86 Copynumber: 1.9 Consensus size: 85
38167243 CTCAAATTTT
* *
38167253 TTTTCAAAAAAAGCAATTAAG-CTTTTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATG
1 TTTTCAAAAAAAGCAATTAAGACCTGTTTTTTT-CACTCAATTGAGCACTTGAACTTTCAAAATG
*
38167317 CATCAAAAAGGCTTTCAAGCA
65 CAACAAAAAGGCTTTCAAGCA
* * * *
38167338 TTTTCAAGAAAAGCAATTACGCACCTGTTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATG
1 TTTTCAAAAAAAGCAATTAAG-ACCTGTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATG
*
38167403 TAACAAAAAG
65 CAACAAAAAG
38167413 ACCCTCAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
85 19 0.29
86 37 0.57
87 9 0.14
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (85 bp):
TTTTCAAAAAAAGCAATTAAGACCTGTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGC
AACAAAAAGGCTTTCAAGCA
Found at i:38167858 original size:9 final size:9
Alignment explanation
Indices: 38167818--38167885 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
38167808 CTTAATAAAA
38167818 TTTTATAAT
1 TTTTATAAT
*
38167827 TTTT-TTAT
1 TTTTATAAT
*
38167835 ATTTATATAT
1 TTTTATA-AT
38167845 ATTTTATAAT
1 -TTTTATAAT
**
38167855 TTTTACGAT
1 TTTTATAAT
38167864 TTTTAT-AT
1 TTTTATAAT
*
38167872 TTTTCTAAT
1 TTTTATAAT
38167881 TTTTA
1 TTTTA
38167886 ATATTTGAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
8 13 0.28
9 23 0.50
10 4 0.09
11 6 0.13
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (9 bp):
TTTTATAAT
Found at i:38168066 original size:92 final size:89
Alignment explanation
Indices: 38167970--38168198 Score: 245
Period size: 92 Copynumber: 2.6 Consensus size: 89
38167960 AATTTTTAAT
*
38167970 AAAAACATGGGCTTAATTGTTTTTTCTTTGAAAAAGTTTGAGAGTATTTTTGATGTATTTTGAAA
1 AAAAACA-GGGCTTAATTGTTTTTTCTTT-AAAAAGTTTGAGAGT-TTTTTGATGCATTTTGAAA
* *
38168035 GTTCAAGCATCCAATTGAGTGCAAAAA
63 GTTCAAGCACCCAAATGAGTGCAAAAA
* * * *
38168062 AAAAAGCAGAGGCTTAATTGCTTTTTTC--TAAAAAGCATTGAGGGCCTTTTTCATGCATTTTGA
1 AAAAA-CAG-GGCTTAATTG-TTTTTTCTTTAAAAAG-TTTGAGAG-TTTTTTGATGCATTTTGA
*
38168125 AAGTTCAAGTACCCAAATGAGTGCAAAAA
61 AAGTTCAAGCACCCAAATGAGTGCAAAAA
* * *
38168154 AAAAA-AAGACTTAATTG--TTTT-TTTAAAAAGTTTGAGAATTTTTTG
1 AAAAACAGGGCTTAATTGTTTTTTCTTTAAAAAGTTTGAGAGTTTTTTG
38168199 CACCCTTAAG
Statistics
Matches: 115, Mismatches: 15, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
85 5 0.04
86 9 0.08
87 7 0.06
89 9 0.08
90 1 0.01
91 6 0.05
92 59 0.51
93 12 0.10
94 7 0.06
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (89 bp):
AAAAACAGGGCTTAATTGTTTTTTCTTTAAAAAGTTTGAGAGTTTTTTGATGCATTTTGAAAGTT
CAAGCACCCAAATGAGTGCAAAAA
Found at i:38182931 original size:12 final size:12
Alignment explanation
Indices: 38182914--38182943 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
38182904 TATCGTGTCG
38182914 AAAGTCATGGAA
1 AAAGTCATGGAA
38182926 AAAGTCATGGAA
1 AAAGTCATGGAA
38182938 AAAGTC
1 AAAGTC
38182944 GTGCCCACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.23, T:0.17
Consensus pattern (12 bp):
AAAGTCATGGAA
Found at i:38196841 original size:16 final size:18
Alignment explanation
Indices: 38196820--38196852 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
38196810 CACTTGCTGA
38196820 TCATTCA-A-CTCATCCC
1 TCATTCACATCTCATCCC
38196836 TCATTCACATCTCATCC
1 TCATTCACATCTCATCC
38196853 TCACACTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.24, C:0.42, G:0.00, T:0.33
Consensus pattern (18 bp):
TCATTCACATCTCATCCC
Found at i:38199872 original size:24 final size:25
Alignment explanation
Indices: 38199845--38199947 Score: 95
Period size: 25 Copynumber: 4.2 Consensus size: 25
38199835 GGCTCTTCGA
*
38199845 AGCTACCCGTTAT-TGGCTCGCATG
1 AGCTTCCCGTTATATGGCTCGCATG
**
38199869 AGCTTCCCG--ATGATGGCTCTTATG
1 AGCTTCCCGTTAT-ATGGCTCGCATG
** * * *
38199893 AGCTTCCCGTTATACAGCCCGAATA
1 AGCTTCCCGTTATATGGCTCGCATG
*
38199918 AGCTTCCCGTTATATGGCTCACATG
1 AGCTTCCCGTTATATGGCTCGCATG
38199943 AGCTT
1 AGCTT
38199948 TCTATTATAT
Statistics
Matches: 60, Mismatches: 15, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
22 2 0.03
24 26 0.43
25 30 0.50
26 2 0.03
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.30
Consensus pattern (25 bp):
AGCTTCCCGTTATATGGCTCGCATG
Found at i:38201710 original size:27 final size:30
Alignment explanation
Indices: 38201647--38201718 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 30
38201637 TTTTAATATA
*
38201647 TATATACATTATTTAGTTTAAATTATCTTT
1 TATATATATTATTTAGTTTAAATTATCTTT
38201677 TAATATATATTATTTAGTTTAAATT-T-TTT
1 T-ATATATATTATTTAGTTTAAATTATCTTT
*
38201706 T-TATATGTTATTT
1 TATATATATTATTT
38201719 CAAAATTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.28
29 4 0.10
30 2 0.05
31 22 0.56
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (30 bp):
TATATATATTATTTAGTTTAAATTATCTTT
Found at i:38201864 original size:25 final size:25
Alignment explanation
Indices: 38201814--38201864 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
38201804 TACTTTGGAA
*
38201814 ATGATTTATTTTAAGTTATTTATAT
1 ATGATTTATTTTAAGTTACTTATAT
* *
38201839 ATGATTTTATTTTTAGTTGCTT-TAT
1 ATGA-TTTATTTTAAGTTACTTATAT
38201864 A
1 A
38201865 CATAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (25 bp):
ATGATTTATTTTAAGTTACTTATAT
Found at i:38218210 original size:66 final size:66
Alignment explanation
Indices: 38218096--38218224 Score: 172
Period size: 66 Copynumber: 2.0 Consensus size: 66
38218086 AATCTGACTT
*
38218096 AGACATGTAATAATGATGTACAAACTAAGACATAATTAATAGACTTGAAACAACTAAA-AACAAT
1 AGACATGTAATAATGATGTACAAACTAAAACATAATTAATAGACTTGAAACAACTAAAGAACAAT
38218160 C
66 C
* ** * *
38218161 AGACATGTAATAATGTTGTATGGAATTAAAACATAATTAATATGA-TTGAAATAACTAAAGAACA
1 AGACATGTAATAATGATGTA-CAAACTAAAACATAATTAATA-GACTTGAAACAACTAAAGAACA
38218225 TTTAAGTCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
65 19 0.35
66 30 0.55
67 6 0.11
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.26
Consensus pattern (66 bp):
AGACATGTAATAATGATGTACAAACTAAAACATAATTAATAGACTTGAAACAACTAAAGAACAAT
C
Found at i:38218674 original size:15 final size:15
Alignment explanation
Indices: 38218651--38218681 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38218641 TGGATCTCGG
38218651 TATCCTCCCTATGGC
1 TATCCTCCCTATGGC
*
38218666 TATCTTCCCTATGGC
1 TATCCTCCCTATGGC
38218681 T
1 T
38218682 GATAGATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.35, G:0.13, T:0.39
Consensus pattern (15 bp):
TATCCTCCCTATGGC
Found at i:38220979 original size:12 final size:11
Alignment explanation
Indices: 38220946--38220982 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
38220936 CAGTTAATCT
38220946 GTTAGCTGTTA
1 GTTAGCTGTTA
38220957 GTTAGCTGTTA
1 GTTAGCTGTTA
*
38220968 GTTGATCTGTTA
1 GTT-AGCTGTTA
38220980 GTT
1 GTT
38220983 TGTTCTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.16, C:0.08, G:0.27, T:0.49
Consensus pattern (11 bp):
GTTAGCTGTTA
Found at i:38233182 original size:20 final size:21
Alignment explanation
Indices: 38233147--38233205 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
38233137 TACTGGGTTA
*
38233147 ATTTTTTTAGATAATTACG-CTT
1 ATTTTTTTA-A-AATTAAGACTT
*
38233169 ATTTTTTTAAAATTAAGAGTT
1 ATTTTTTTAAAATTAAGACTT
*
38233190 ATTTTTTTAAATTTAA
1 ATTTTTTTAAAATTAA
38233206 TGTATGATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.18
21 18 0.55
22 9 0.27
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (21 bp):
ATTTTTTTAAAATTAAGACTT
Found at i:38242402 original size:20 final size:20
Alignment explanation
Indices: 38242353--38242402 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
38242343 TGGAGAAGGA
*
38242353 ATATTGATACCTTAAGAAAT
1 ATATCGATACCTTAAGAAAT
*
38242373 ATATCAATACCTTAAGAAA-
1 ATATCGATACCTTAAGAAAT
38242392 AGTATCGATAC
1 A-TATCGATAC
38242403 TGGATTGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:38246961 original size:22 final size:22
Alignment explanation
Indices: 38246930--38246978 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
38246920 TCATGGACAT
*
38246930 GGAAGGTCATACTAATGAGCAA
1 GGAAGATCATACTAATGAGCAA
* *
38246952 GGAAGATCATACTAATGGGCGA
1 GGAAGATCATACTAATGAGCAA
38246974 GGAAG
1 GGAAG
38246979 TGATTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.12, G:0.33, T:0.16
Consensus pattern (22 bp):
GGAAGATCATACTAATGAGCAA
Found at i:38251056 original size:19 final size:20
Alignment explanation
Indices: 38251011--38251065 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 20
38251001 ATCTTCAAAT
*
38251011 ATATGCAATCTTAGATATGA
1 ATATGCAATCTTGGATATGA
38251031 TATATGCAATCTTGGATATG-
1 -ATATGCAATCTTGGATATGA
38251051 ATATGCAATCTTGGA
1 ATATGCAATCTTGGA
38251066 AGATATGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (20 bp):
ATATGCAATCTTGGATATGA
Found at i:38259954 original size:45 final size:45
Alignment explanation
Indices: 38259811--38259956 Score: 131
Period size: 45 Copynumber: 3.3 Consensus size: 45
38259801 GTGGCAGCAG
* * *
38259811 AGCAGGTTAAAGATAACAGATATTGTCTTCCTGTACTGATAGTGA
1 AGCAGATTAAAGATAACAGATCTTGTCTTCCTGTACTGACAGTGA
* * * * * *
38259856 AGCAGATTGAAGA-CACTAG-CCTTG-CTTCCCTCG--GTGGCAGTGG
1 AGCAGATTAAAGATAAC-AGATCTTGTCTT-CCT-GTACTGACAGTGA
* *
38259899 AGCGGGTTAAAGATAACAGATCTTGTCTTCCTGTACTGACAGTGA
1 AGCAGATTAAAGATAACAGATCTTGTCTTCCTGTACTGACAGTGA
38259944 AGCAGATTAAAGA
1 AGCAGATTAAAGA
38259957 CACTAGCCTT
Statistics
Matches: 74, Mismatches: 19, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
43 22 0.30
44 17 0.23
45 35 0.47
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
AGCAGATTAAAGATAACAGATCTTGTCTTCCTGTACTGACAGTGA
Found at i:38260082 original size:351 final size:351
Alignment explanation
Indices: 38259459--38261076 Score: 2211
Period size: 351 Copynumber: 4.6 Consensus size: 351
38259449 AGTTGTAGTG
* * * * * * * * *
38259459 GAGCAGGTTAAAAATAGCAGATCTTGTCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAA
1 GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
* * * * *
38259524 CCTTGCCTCTCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGATCTTGCCTTCCTGTACTAACA
66 CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
* * *
38259589 ACGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCA
131 ATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAAATAGCA
* *
38259654 AATCTTGCCTTCCTATACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGC
196 GATCTTGCCTTCCTATACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGC
* * *
38259719 AGCAGTGCAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAC
261 AGCGGAGCAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAC
*
38259784 TAACCTTGCCTCCCTCGGTGGCAGCA
326 TAGCCTTGCCTCCCTCGGTGGCAGCA
* * * *
38259810 GAGCAGGTTAAAGATAACAGATATTGTCTTCCTGTACTGATAGTGAAGCAGATTGAAGACACTAG
1 GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
* * * * * *
38259875 CCTTGCTTCCCTCGGTGGCAGTGGAGCGGGTTAAAGATAACAGATCTTGTCTTCCTGTACTGACA
66 CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
* ** **
38259940 GTGAAGCAGATTAAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAGGATAGCA
131 ATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAAATAGCA
* ** * ** * * *
38260005 GATCTTGCCTTCTTATACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCCCTCGGTGGC
196 GATCTTGCCTTCCTATACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGC
* ** * * ** * * *
38260070 AGCGGAGCAGGTT-AAGGA-TAGCAGATCTTGCCTTCTTATA-CTAACAGTGAAGCAGATTGAAG
261 AGCGGAGCAGGTTGAA-AATTA-CAGATCTTATCTCCCTA-AGC-AGTAGTGGAGTAGATCGAAG
*
38260132 ACACTAGCCTTGCCTCCCTCGGTGGCAGCG
322 ACACTAGCCTTGCCTCCCTCGGTGGCAGCA
* * * *
38260162 GAGCAGGTTAAGGATAGCAGATCTTGCCTTCTTATACTAACAGTGAAGCAGATTGAAGACACTAG
1 GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
* *
38260227 CCTTGCCTCCCTCGGTGGCAGCGGAGTAGGTTAAAGATAGCAGATCTTGCCTTCTTGTACTAACA
66 CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
* * * *
38260292 ACGAAGCAGATCGAAGACACTAGCCTTGCCTCTCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCA
131 ATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAAATAGCA
* * * * * *
38260357 GATCTTGTCTTCCTGTATCGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTAC
196 GATCTTGCCTTCCTATACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGC
* *
38260422 AGCGGAGCAGGTTGAAAATTGCAGATCTTATCTCCCTAAGCAGGAGTGGAGTAGATCGAAGACAC
261 AGCGGAGCAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAC
38260487 TAGCCTTGCCTCCCTCGGTGGCAGCA
326 TAGCCTTGCCTCCCTCGGTGGCAGCA
*
38260513 GAGCAGGTTAAAGATAGCATATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
1 GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
38260578 CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
66 CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
* * * *
38260643 GTGAAGCAGATCGAAGACACTAGCCTTGCTTCCCT-GGGGTGCAGCGGAGTAGGTTAAAAATAGC
131 ATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTG-GCAGCGGAGCAGGTTAAAAATAGC
* * *
38260707 ATATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTG
195 AGATCTTGCCTTCCTATACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTG
* * ** * *
38260772 CAGCGAAGCATGTTGAAAATTGTAGATCTTATCTCCCTAAGAAGTAGTGGAGTAGATCGAATACA
260 CAGCGGAGCAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACA
*
38260837 CTAGCCTTGCCTCCCTCAGTGGCAGCA
325 CTAGCCTTGCCTCCCTCGGTGGCAGCA
** *
38260864 GAGCAGGTTAAAGATAGCAGATCTTGCCTTTTTGTACTAACAGTGAAGCAGATTGAAGACACTAG
1 GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
* * * * *
38260929 CCTTGCCTTCCC-CTGTGGCAACAGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGAT
66 CCTTGCC-TCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAAC
* * *
38260993 AATGAAGCAGATTGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGT
130 AATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAAATAGC
* *
38261058 AGATCTTGTCTTCCCATAC
195 AGATCTTGCCTTCCTATAC
38261077 TGGTGGCGAA
Statistics
Matches: 1103, Mismatches: 154, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
350 6 0.01
351 793 0.72
352 301 0.27
353 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (351 bp):
GAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAG
CCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAACA
ATGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAAATAGCA
GATCTTGCCTTCCTATACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGC
AGCGGAGCAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAC
TAGCCTTGCCTCCCTCGGTGGCAGCA
Found at i:38260431 original size:43 final size:43
Alignment explanation
Indices: 38260296--38260431 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 43
38260286 CTAACAACGA
* *
38260296 AGCAGATCGAAGACACTAGCCTTGCCTCTCTGGGTTGCAGCGG
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGG
* ** * * * * * * ** * *
38260339 AGCAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATCGGCAGCGA
1 AGCAGATCGAAGACACCAG-CCTTGCCTCCCTGGGT-TGCAGCGG
*
38260384 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGG
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGG
38260427 AGCAG
1 AGCAG
38260432 GTTGAAAATT
Statistics
Matches: 62, Mismatches: 29, Indels: 4
0.65 0.31 0.04
Matches are distributed among these distances:
43 22 0.35
44 21 0.34
45 19 0.31
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.21
Consensus pattern (43 bp):
AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGG
Found at i:38260540 original size:44 final size:44
Alignment explanation
Indices: 38260491--38260629 Score: 124
Period size: 44 Copynumber: 3.2 Consensus size: 44
38260481 AGACACTAGC
38260491 CTTGCCTCCCTCGGTGGCAGCAGAGCAGGTTAAAGATAGCATAT
1 CTTGCCTCCCTCGGTGGCAGCAGAGCAGGTTAAAGATAGCATAT
* * * * * * * *
38260535 CTTGCCTTCCT-GTACTGACAG-TGAAGCAGATTGAAGACA-C-TAGC
1 CTTGCCTCCCTCG--GTGGCAGCAG-AGCAGGTTAAAGATAGCATA-T
* *
38260579 CTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTCGGTGGCAGCAGAGCAGGTTAAAGATAGCATAT
38260623 CTTGCCT
1 CTTGCCT
38260630 TCCTGTACTA
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
43 20 0.29
44 31 0.44
45 19 0.27
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (44 bp):
CTTGCCTCCCTCGGTGGCAGCAGAGCAGGTTAAAGATAGCATAT
Found at i:38260671 original size:44 final size:44
Alignment explanation
Indices: 38260535--38260675 Score: 128
Period size: 43 Copynumber: 3.2 Consensus size: 44
38260525 GATAGCATAT
38260535 CTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGC
1 CTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGC
* * * * * * * * *
38260579 CTTGCCTCCCTCG--GTGGCAGCGGAGCAGGTTAAAGATAGC-AGAT
1 CTTGCCTTCCT-GTACTGACAGTGAAGCAGATTGAAGACA-CTAG-C
* *
38260623 CTTGCCTTCCTGTACTAACAGTGAAGCAGATCGAAGACACTAGC
1 CTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGC
38260667 CTTG-CTTCC
1 CTTGCCTTCC
38260676 CTGGGGTGCA
Statistics
Matches: 71, Mismatches: 20, Indels: 13
0.68 0.19 0.12
Matches are distributed among these distances:
43 26 0.37
44 26 0.37
45 19 0.27
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGC
Found at i:38261098 original size:88 final size:88
Alignment explanation
Indices: 38259381--38261071 Score: 1873
Period size: 88 Copynumber: 19.2 Consensus size: 88
38259371 CAGATCAGTG
* * * * * * *
38259381 AAGATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGGCACCAACCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* * *
38259446 CT-GAGTTGTAGTGGAGCAGGTTA
66 CTCG-GTGGCAGCGGAGCAGGTTA
* * * * * * * * *
38259469 AAAATAGCAGATCTTGTCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAACCTTGCCTCT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* * *
38259534 CTGGGTTGCAGCGGAGCAAGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * **
38259557 AAAATAGCAGATCTTGCCTTCCTGTACTAACAACGAAGCAGATCGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* *
38259622 CTGGGTTGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * * * * *
38259645 AAAATAGCAAATCTTGCCTTCCTATACCGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* * * *
38259710 CTGGGTTGCAGCAGTGCAGGTTGA
66 CTCGGTGGCAGCGGAGCAGGTT-A
* ** * * * * * * *
38259734 AA-ATTA-CAAATCTTATCTCCCT-AAGCAG-TAGTGGAGTAGATCGAAGACACTAACCTTGCCT
1 AAGA-TAGCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCT
*
38259795 CCCTCGGTGGCAGCAGAGCAGGTTA
64 CCCTCGGTGGCAGCGGAGCAGGTTA
* * * * * *
38259820 AAGATAACAGATATTGTCTTCCTGTACTGATAGTGAAGCAGATTGAAGACACTAGCCTTGCTTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* *
38259885 CTCGGTGGCAGTGGAGCGGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * **
38259908 AAGATAACAGATCTTGTCTTCCTGTACTGACAGTGAAGCAGATTAAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
38259973 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * *
38259996 AGGATAGCAGATCTTGCCTTCTTATACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
38260061 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * *
38260084 AGGATAGCAGATCTTGCCTTCTTATACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
38260149 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * *
38260172 AGGATAGCAGATCTTGCCTTCTTATACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
*
38260237 CTCGGTGGCAGCGGAGTAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * ** *
38260260 AAGATAGCAGATCTTGCCTTCTTGTACTAACAACGAAGCAGATCGAAGACACTAGCCTTGCCTCT
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* *
38260325 CTGGGTTGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * *
38260348 AAAATAGCAGATCTTGTCTTCCTGTA-TCGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGTACT-GACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTC
* **
38260412 CCTGGGTTACAGCGGAGCAGGTTGA
65 CCTCGGTGGCAGCGGAGCAGGTT-A
* ** * * * * * *
38260437 AA-ATTGCAGATCTTATCTCCCT-AAGCAG-GAGTGGAGTAGATCGAAGACACTAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTC
*
38260499 CCTCGGTGGCAGCAGAGCAGGTTA
65 CCTCGGTGGCAGCGGAGCAGGTTA
* *
38260523 AAGATAGCATATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
38260588 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* *
38260611 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATCGAAGACACTAGCCTTGCTTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* *
38260676 CT-GGGGTGCAGCGGAGTAGGTTA
66 CTCGGTG-GCAGCGGAGCAGGTTA
* * * * * *
38260699 AAAATAGCATATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* * * *
38260764 CTAGGTTGCAGCGAAGCATGTTGA
66 CTCGGTGGCAGCGGAGCAGGTT-A
* * ** * * * * * *
38260788 AA-ATTGTAGATCTTATC-TCC-CTA-AGAAGTAGTGGAGTAGATCGAATACACTAGCCTTGCCT
1 AAGATAGCAGATCTTGCCTTCCTGTACTG-A-CAGTGAAGCAGATCGAAGACACTAGCCTTGCCT
* *
38260849 CCCTCAGTGGCAGCAGAGCAGGTTA
64 CCCTCGGTGGCAGCGGAGCAGGTTA
** * *
38260874 AAGATAGCAGATCTTGCCTTTTTGTACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTTC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCC-TC
* * *
38260939 CC-CTGTGGCAACAGAGCAGGTTA
65 CCTCGGTGGCAGCGGAGCAGGTTA
* * *
38260962 AAGATAGCAGATCTTGCCTTCCTGTACTGATAATGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
38261027 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* *
38261050 AAGATAGTAGATCTTGTCTTCC
1 AAGATAGCAGATCTTGCCTTCC
38261072 CATACTGGTG
Statistics
Matches: 1396, Mismatches: 181, Indels: 52
0.86 0.11 0.03
Matches are distributed among these distances:
85 1 0.00
86 14 0.01
87 195 0.14
88 1165 0.83
89 21 0.02
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
CTCGGTGGCAGCGGAGCAGGTTA
Found at i:38261157 original size:44 final size:43
Alignment explanation
Indices: 38261050--38261328 Score: 217
Period size: 44 Copynumber: 6.3 Consensus size: 43
38261040 GAGCAGGTTA
* *
38261050 AAGATAGTAGATCTTGTCTTCCCATACTGGTGGC-GAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTATA-T--TGGCAGAAGTAGATCG
* * *
38261095 AAGAT-GACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTG
1 AAGATAG-CAGATCTTGTCTTCCTATATTGGCA-GAAGTAGATCG
* * * * *
38261139 AAGATAGCTGATCCTGTCTTCCTATATTGGTAGAAAGTGGATTG
1 AAGATAGCAGATCTTGTCTTCCTATATTGGCAG-AAGTAGATCG
*
38261183 AAGAT-TCAGATCTTGTCTTCCTATACTGGTGGC-GAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTATA-T--TGGCAGAAGTAGATCG
* * * ** * * * *
38261227 AAGAAAGCGGATCTTATCTTTATGTGTTGGCGTGAAGTAGATTG
1 AAGATAGCAGATCTTGTCTTCCTATATTGGC-AGAAGTAGATCG
* * *
38261271 AAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCCTATATTGGCA-GAAGTAGATCG
38261315 AAGAT-GCAGATCTT
1 AAGATAGCAGATCTT
38261329 NTATAATGTA
Statistics
Matches: 183, Mismatches: 39, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
42 8 0.04
43 26 0.14
44 111 0.61
45 35 0.19
46 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
AAGATAGCAGATCTTGTCTTCCTATATTGGCAGAAGTAGATCG
Found at i:38261198 original size:132 final size:132
Alignment explanation
Indices: 38261058--38261328 Score: 427
Period size: 132 Copynumber: 2.1 Consensus size: 132
38261048 TAAAGATAGT
* *
38261058 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG-ATGACAGATCTTGTCTTCATGTAT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG-CAGATCTTATCTTCATGTAT
* *
38261122 TGGCATGAAGTAGATTGAAGATAGCTGATCCTGTCTTCCTATATTGGTAGAAAGTGGATTGAAGA
65 TGGCATGAAGTAGATTGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGAAGA
*
38261187 TTC
130 TGC
* * * *
38261190 AGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCGGATCTTATCTTTATGTGTT
1 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATT
* *
38261255 GGCGTGAAGTAGATTGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
66 GGCATGAAGTAGATTGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGAAGAT
38261320 GC
131 GC
38261322 AGATCTT
1 AGATCTT
38261329 NTATAATGTA
Statistics
Matches: 127, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 125 0.98
133 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (132 bp):
AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATT
GGCATGAAGTAGATTGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGAAGAT
GC
Found at i:38267168 original size:33 final size:33
Alignment explanation
Indices: 38267131--38267193 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
38267121 AAATATTAAT
*
38267131 TATTTATAAA-ATTTAATTATAA-TATATAAACTA
1 TATTT-TAAATATTTAAATATAACTAT-TAAACTA
38267164 TATTTTAAATATTTAAATATAACTATTAAA
1 TATTTTAAATATTTAAATATAACTATTAAA
38267194 TATTTGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 4 0.15
33 20 0.74
34 3 0.11
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TATTTTAAATATTTAAATATAACTATTAAACTA
Found at i:38273070 original size:47 final size:47
Alignment explanation
Indices: 38273019--38273185 Score: 244
Period size: 47 Copynumber: 3.6 Consensus size: 47
38273009 GATAATTGTG
*
38273019 ATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38273066 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
38273113 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38273160 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
38273186 TCCCGAAGGG
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 107 1.00
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:38277834 original size:6 final size:6
Alignment explanation
Indices: 38277825--38277870 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
38277815 GTAATAGGAC
* *
38277825 CGGAGG CGGAGG CGGAGG CGGAGG CGGAGG CAGAGG CCGAGG CGGA
1 CGGAGG CGGAGG CGGAGG CGGAGG CGGAGG CGGAGG CGGAGG CGGA
38277871 ATCAGTCCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.61, T:0.00
Consensus pattern (6 bp):
CGGAGG
Found at i:38278138 original size:5 final size:5
Alignment explanation
Indices: 38278128--38278159 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
38278118 TCTTGCAGAT
*
38278128 AAATG AAATG AAATG AAATG AAATG AATTG AA
1 AAATG AAATG AAATG AAATG AAATG AAATG AA
38278160 GTCCGACACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (5 bp):
AAATG
Found at i:38283754 original size:17 final size:17
Alignment explanation
Indices: 38283722--38283755 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38283712 TGCCCTTTTG
* *
38283722 TTTTTTTTGTTTTTTCC
1 TTTTTTTTATTCTTTCC
38283739 TTTTTTTTATTCTTTCC
1 TTTTTTTTATTCTTTCC
38283756 ATCTTCTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTTTTTATTCTTTCC
Found at i:38285449 original size:18 final size:19
Alignment explanation
Indices: 38285403--38285450 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
38285393 TAAAAAAAAC
*
38285403 AACAAAAATCAACGGTACTA
1 AACAATAAT-AACGGTACTA
**
38285423 ATGAATAATAACGGTA-TA
1 AACAATAATAACGGTACTA
38285441 AACAATAATA
1 AACAATAATA
38285451 TAAAAAAACA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 10 0.43
19 7 0.30
20 6 0.26
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.21
Consensus pattern (19 bp):
AACAATAATAACGGTACTA
Found at i:38286530 original size:21 final size:21
Alignment explanation
Indices: 38286503--38286551 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
38286493 GTTTTCTTTT
38286503 AAAAAAAGAA-AAAAAATCAAG
1 AAAAAAA-AATAAAAAATCAAG
* *
38286524 GAAAAAAAATAAGAAATCAAG
1 AAAAAAAAATAAAAAATCAAG
38286545 AAAAAAA
1 AAAAAAA
38286552 TAAGTTCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.80, C:0.04, G:0.10, T:0.06
Consensus pattern (21 bp):
AAAAAAAAATAAAAAATCAAG
Found at i:38286550 original size:19 final size:21
Alignment explanation
Indices: 38286516--38286555 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
38286506 AAAAGAAAAA
38286516 AAATCAAGGAAAAAAAATAAG
1 AAATCAAGGAAAAAAAATAAG
38286537 AAATCAA-G-AAAAAAATAAG
1 AAATCAAGGAAAAAAAATAAG
38286556 TTCTACCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 1 0.05
21 7 0.37
ACGTcount: A:0.72, C:0.05, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATCAAGGAAAAAAAATAAG
Found at i:38287285 original size:45 final size:46
Alignment explanation
Indices: 38287252--38287602 Score: 353
Period size: 46 Copynumber: 7.3 Consensus size: 46
38287242 TGTTGTCTGT
* *
38287252 AGCTTTAATCTGTTGCAACGCCAGGGAAA-AAGATCCCCTGCCTTC
1 AGCTTTAATCTGTTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* **
38287297 AGCTTTATTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * *
38287343 AGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTACCTTC
1 AGCTTTAATCTG-T----TGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* ** *
38287394 AGCTTTAATTTACTGCAACGCTAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* *
38287440 AGCTTTAATCTGTTCCATTGCAACGCCAAGGAAATAAGATTCGCTACCTTC
1 AGCTTTAATCTG-----TTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * * *
38287491 AGCTTTAATCTATTCCACTACAACGCTAAGGGAAAAAAAATTCGCTGCCTTC
1 AGCTTTAATCT-GT----TGCAACGC-CAGGGAAATAAGATTCGCTGCCTTC
** *
38287543 AGCTTTAATCTACTGCAACGCCAGAGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
38287589 AGCTTTAATCTGTT
1 AGCTTTAATCTGTT
38287603 CCACTGCAAC
Statistics
Matches: 249, Mismatches: 40, Indels: 33
0.77 0.12 0.10
Matches are distributed among these distances:
45 26 0.10
46 96 0.39
47 8 0.03
51 88 0.35
52 31 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (46 bp):
AGCTTTAATCTGTTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
Found at i:38287379 original size:51 final size:51
Alignment explanation
Indices: 38287265--38287615 Score: 421
Period size: 51 Copynumber: 7.2 Consensus size: 51
38287255 TTTAATCTGT
* * * *
38287265 TGCAACGCCAGGGAAA-AAGATCCCCTGCCTTCAGCTTT-A----TTCTAC
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
*
38287310 TGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* *
38287361 TGCAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAA--T-TT--AC
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* * *
38287407 TGCAACGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAT
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* *
38287458 TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTCCAC
1 TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* * * *
38287509 TACAACGCTAAGGGAAAAAAAATTCGCTGCCTTCAGCTTTAATC---T--AC
1 TGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
38287556 TGCAACGCC-AGAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
1 TGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
38287607 TGCAACGCC
1 TGCAACGCC
38287616 TGGGAAAAAA
Statistics
Matches: 263, Mismatches: 25, Indels: 30
0.83 0.08 0.09
Matches are distributed among these distances:
45 17 0.06
46 89 0.34
47 10 0.04
48 3 0.01
49 5 0.02
51 110 0.42
52 29 0.11
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (51 bp):
TGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
Found at i:38287413 original size:97 final size:97
Alignment explanation
Indices: 38287265--38287597 Score: 430
Period size: 97 Copynumber: 3.4 Consensus size: 97
38287255 TTTAATCTGT
* * * * *
38287265 TGCAACGCCAGGGAAA-AAGATCCCCTGCCTTCAGCTTT-ATTCTACTGCAACGCCAGGGAAATA
1 TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATT-TACTGCAACGCAAGGGAAATA
38287328 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
65 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
* *
38287361 TGCAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATTTACTGCAACGCTAGGGAAATAA
1 TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATTTACTGCAACGCAAGGGAAATAA
*
38287426 GATTCGCTGCCTTCAGCTTTAATCTGTTCCAT
66 GATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
*
38287458 TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTCCACTACAACGCTAAGGG
1 TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAA--T-TT--ACTGCAACGC-AAGGG
* *
38287523 AAAAAAAATTCGCTGCCTTCAGCTTTAATC---T--AC
60 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
*
38287556 TGCAACGCC-AGAGAAATAAGATTCGCTGCCTTCAGCTTTAAT
1 TGCAACGCCAAG-GAAATAAGATTCGCTACCTTCAGCTTTAAT
38287598 CTGTTCCACT
Statistics
Matches: 214, Mismatches: 14, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
96 15 0.07
97 113 0.53
98 41 0.19
99 1 0.00
100 3 0.01
102 9 0.04
103 32 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (97 bp):
TGCAACGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATTTACTGCAACGCAAGGGAAATAA
GATTCGCTGCCTTCAGCTTTAATCTGTTCCAC
Found at i:38291115 original size:23 final size:23
Alignment explanation
Indices: 38291089--38291139 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
38291079 TCGGACTAGG
*
38291089 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
38291112 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
38291135 AGTAA
1 TGTAA
38291140 GAAAATAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:38294504 original size:57 final size:57
Alignment explanation
Indices: 38294415--38294525 Score: 179
Period size: 57 Copynumber: 1.9 Consensus size: 57
38294405 AGAGTAACTT
* *
38294415 AATGAGGTCTCGCCTAGTCTTTGTGGTAATGTCAGTTCCAATTTTCACCTCTTTCTC
1 AATGAGGTCTCACCTAGTCTTTGTGGTAATGTCAGTTCCAATATTCACCTCTTTCTC
*
38294472 AATGAGGTCTCACCTCA-TCTTTGTGGTGATGTCAGTTCCAATATTCACCTCTTT
1 AATGAGGTCTCACCT-AGTCTTTGTGGTAATGTCAGTTCCAATATTCACCTCTTT
38294526 TCCCTCTTCC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 49 0.98
58 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (57 bp):
AATGAGGTCTCACCTAGTCTTTGTGGTAATGTCAGTTCCAATATTCACCTCTTTCTC
Found at i:38298236 original size:48 final size:48
Alignment explanation
Indices: 38298165--38298258 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
38298155 TACATCTCAA
*
38298165 CTTGGGCCTGTATATTTGGTGGAGTAAAACCTGGAGGATAGAGCGGTT
1 CTTGGGCCTGTATATTTGGTGGAGTAAAACCTAGAGGATAGAGCGGTT
38298213 CTTGGGCCTGTATATTTGGTGGAGTAAAACCTAGAGGATAGAGCGG
1 CTTGGGCCTGTATATTTGGTGGAGTAAAACCTAGAGGATAGAGCGG
38298259 CTCCTCATTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (48 bp):
CTTGGGCCTGTATATTTGGTGGAGTAAAACCTAGAGGATAGAGCGGTT
Found at i:38298444 original size:24 final size:24
Alignment explanation
Indices: 38298397--38298450 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
38298387 GGATCTTAGC
* *
38298397 TAGTTGCTCTTGCATTTGCATTTG
1 TAGTTGCTCTTGCATCTCCATTTG
* *
38298421 TAGTTGGTCTTGCATCTCCCTTTG
1 TAGTTGCTCTTGCATCTCCATTTG
*
38298445 AAGTTG
1 TAGTTG
38298451 TTCAAGTCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.13, C:0.19, G:0.22, T:0.46
Consensus pattern (24 bp):
TAGTTGCTCTTGCATCTCCATTTG
Found at i:38298634 original size:24 final size:24
Alignment explanation
Indices: 38298587--38298634 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
38298577 TAGTGGACTT
* *
38298587 TAATGCATATGATGTAATGTAATG
1 TAATGCAAATGATGAAATGTAATG
38298611 TAATGCAAATGCATGAAATG-AATG
1 TAATGCAAATG-ATGAAATGTAATG
38298635 CAAAAAAGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (24 bp):
TAATGCAAATGATGAAATGTAATG
Found at i:38300872 original size:16 final size:16
Alignment explanation
Indices: 38300851--38300884 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38300841 TTTTATGATG
* *
38300851 AAATGCTATGCAGTCA
1 AAATGCCATGCAATCA
38300867 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
38300883 AA
1 AA
38300885 GCAAAACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:38303681 original size:21 final size:21
Alignment explanation
Indices: 38303655--38303859 Score: 387
Period size: 21 Copynumber: 9.9 Consensus size: 21
38303645 NNNNNNNNNN
38303655 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303676 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303697 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303718 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303739 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303760 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303781 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303802 ATATCTAAGATTGCATATATC
1 ATATCTAAGATTGCATATATC
38303823 ATATCTAAGATTGC--ATATC
1 ATATCTAAGATTGCATATATC
*
38303842 ATATCTAAGATTGTATAT
1 ATATCTAAGATTGCATAT
38303860 CCTCAAAAAT
Statistics
Matches: 181, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
19 18 0.10
21 163 0.90
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATCTAAGATTGCATATATC
Found at i:38304252 original size:44 final size:44
Alignment explanation
Indices: 38304170--38304284 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
38304160 CTCTAATCCA
* * * *
38304170 CTCCACTACAACTT-AGGGAGA-AGGATTTGTTTATTTAGTGTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTGTTTACTTAGTCTG
38304212 C-CTCACTACAACTTCA-GGAGGATAAGACTTGTTTACTTAGTCTG
1 CTC-CACTACAACTTCAGGGA-GATAAGACTTGTTTACTTAGTCTG
*
38304256 CTCCACTGCAACTTCAGGGAGATAAGACT
1 CTCCACTACAACTTCAGGGAGATAAGACT
38304285 AGACGCGATC
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
41 1 0.02
42 15 0.24
43 3 0.05
44 39 0.63
45 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAGATAAGACTTGTTTACTTAGTCTG
Found at i:38304387 original size:44 final size:42
Alignment explanation
Indices: 38304252--38304625 Score: 171
Period size: 44 Copynumber: 8.8 Consensus size: 42
38304242 GTTTACTTAG
* * *
38304252 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGACGC-GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGGCTCTGA
* * * * *
38304293 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT--TAGGCTCTGA
* * *
38304336 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTCTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTA--GGCTCTGA
* * * *
38304380 TCTGCTCCACTGCAACTTTAGGGAGATAAAATTTGCCATCT--
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGGC-TCTGA
*
38304421 TCAGTCTACCTTACTGCAACTTCA-GGAGGATAAGACTT--GCTAGCTGA
1 TCTG-CT-CC--ACTGCAACTTCAGGGA-GATAAGA-TTAGGCT--CTGA
* * * *
38304468 GTTTGCTCCACTGCAA----AGGGAGATAAGACTAGACGC-GA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGGCTCTGA
* * * * * * * *
38304506 TCTGCT-CTCTGCAACTTTAGAGAGATAATATCCAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT--TAGGCTCTGA
* * * * * * *
38304549 TCCGCTCCACTGCAACTTTAAGGATATAGGATTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTA--GGCTCTGA
*
38304593 TCTACTCCACTGCAACTTCAGGGAGATAAGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
38304626 TGCCATCTTC
Statistics
Matches: 245, Mismatches: 57, Indels: 59
0.68 0.16 0.16
Matches are distributed among these distances:
36 7 0.03
37 5 0.02
38 2 0.01
39 2 0.01
40 40 0.16
41 13 0.05
42 10 0.04
43 19 0.08
44 120 0.49
45 19 0.08
46 4 0.02
47 2 0.01
48 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGGCTCTGA
Found at i:38304603 original size:213 final size:214
Alignment explanation
Indices: 38304220--38304636 Score: 667
Period size: 213 Copynumber: 1.9 Consensus size: 214
38304210 TGCCTCACTA
* *
38304220 CAACTTCAGGAGGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 CAACTTCAGGAGGATAAGACTTGTCTACTGAGTCTGCTCCACTGCAA---CAGGGAGATAAGACT
*
38304285 AGACGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCCGCTCCACTGCA
63 AGACGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCA
* * *
38304350 ACTTCAGGGAGATAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTG
128 ACTTCAAGGAGATAGGATTATCGGCTCTAATCTACTCCACTGCAACTTCAGGGAGATAAAATTTG
38304415 CCATCTTCAGTCTACCTTACTG
193 CCATCTTCAGTCTACCTTACTG
*
38304437 CAACTTCAGGAGGATAAGACTTG-CTAGCTGAGTTTGCTCCACTGCAA-AGGGAGATAAGACTAG
1 CAACTTCAGGAGGATAAGACTTGTCTA-CTGAGTCTGCTCCACTGCAACAGGGAGATAAGACTAG
* *
38304500 ACGCGATCTGCTCTCTGCAACTTTAGAGAGATAATATCCAAGGTTTTAATCCGCTCCACTGCAAC
65 ACGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAAC
* * * *
38304565 TTTAAGGATATAGGATTATCGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCC
130 TTCAAGGAGATAGGATTATCGGCTCTAATCTACTCCACTGCAACTTCAGGGAGATAAAATTTGCC
38304630 ATCTTCA
195 ATCTTCA
38304637 ACCTACTCCG
Statistics
Matches: 186, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
213 143 0.77
216 2 0.01
217 41 0.22
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (214 bp):
CAACTTCAGGAGGATAAGACTTGTCTACTGAGTCTGCTCCACTGCAACAGGGAGATAAGACTAGA
CGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACT
TCAAGGAGATAGGATTATCGGCTCTAATCTACTCCACTGCAACTTCAGGGAGATAAAATTTGCCA
TCTTCAGTCTACCTTACTG
Found at i:38304754 original size:44 final size:44
Alignment explanation
Indices: 38304587--38304888 Score: 125
Period size: 44 Copynumber: 6.8 Consensus size: 44
38304577 GGATTATCGG
* * ** * *
38304587 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
1 CTTTAATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGTCGT
* * * * * * ** * *
38304632 CTTCAACCTACTCCGCTGCTGCTCAGGGAGATAAGGCTTGGCGG
1 CTTTAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCGT
* * *
38304676 CTTAAATCTGCTTCCCACTA-T-CTT-GGAAAAATAAGATTTGTCGT
1 CTTTAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTGTCGT
* * * *
38304720 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAAT
1 CTTTAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTC-GT
* * * * * * * * * * *
38304764 CTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGT-GG
1 CTTTAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTTGTCGT
** *
38304808 CTAAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGTCGT
1 CTTTAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTTGTCGT
*
38304852 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
1 CTTTAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
38304889 CTACAATCTT
Statistics
Matches: 179, Mismatches: 62, Indels: 33
0.65 0.23 0.12
Matches are distributed among these distances:
42 12 0.07
43 13 0.07
44 118 0.66
45 28 0.16
46 8 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
CTTTAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCGT
Found at i:38305089 original size:125 final size:125
Alignment explanation
Indices: 38304630--38305827 Score: 1613
Period size: 125 Copynumber: 9.4 Consensus size: 125
38304620 AAGATTTGCC
* * *
38304630 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGATAAGGCTTGGCGGCTTAAATCTGCTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* * ** * *
38304695 ATCTTGGAAAAATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* * *
38304755 ATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTAAAATCTGCT
1 ATCT---A----CAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCT
* ** *
38304820 TCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATA
59 TCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATA
*
38304885 AG
124 GG
* * *
38304887 ATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTAAAATCTGCT
1 ATCT---A----CAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCT
* * * *
38304952 TCCCCCTATCTTGGAAAGATAAGATTTGCCGGCTTCAATTTGTTCCACTACTGCTTAGGAAGATA
59 TCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATA
38305017 GG
124 GG
* * *
38305019 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGATAAGGCTTGGCGGCTTAAATCTGCTTCCCCCT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* *
38305084 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGATAGG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* * *
38305144 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* *
38305209 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGATAGG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* * *
38305269 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* *
38305334 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGATAGG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* * *
38305394 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* * * *
38305459 ATCTTGGAAAGATAAGATTTGTCGTCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* * *
38305519 ATCTACAATCTTTAACCTTCTCTGCTGCTGCTCAGGGAAACAAGGCTTGGTGGCTGAAATCTGCT
1 ATCTACAA-C-CT-A-C-TC-C-GCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCT
* *
38305584 TCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
59 TCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATA
38305649 GG
124 GG
* *
38305651 ATCTACAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
* * * *
38305716 ATCTTGGAAAGATAAGATTTGCCATCTTCGATTTGCTCTACTACTGCTTAGGGAGATAAG
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
* *
38305776 ATCTACAATCTTCAACCTTCTCCGCTGTTGCTCAGGGAGACAAGGCTTGGTG
1 ATCT---A----CAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
38305828 TTTCACCAGT
Statistics
Matches: 995, Mismatches: 57, Indels: 35
0.92 0.05 0.03
Matches are distributed among these distances:
125 594 0.60
126 2 0.00
127 3 0.00
128 3 0.00
129 3 0.00
130 3 0.00
131 2 0.00
132 385 0.39
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (125 bp):
ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACT
ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAGG
Found at i:38305729 original size:257 final size:256
Alignment explanation
Indices: 38304630--38305827 Score: 1700
Period size: 257 Copynumber: 4.7 Consensus size: 256
38304620 AAGATTTGCC
* * * *
38304630 ATCTTCAACCTACTCCGCTGCTGCTCAGGGAGATAAGGCTTGGCGGCTTAAATCTGCTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
* * ** *
38304695 ATCTTGGAAAAATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
* * *
38304760 CAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTAAAATCTGCTTCCCA
131 CAATCTTTAACCTTCT-CGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCA
* ** * *
38304825 CTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAG
195 CTATCTTGGAAAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGAAGATAGG
* * * *
38304887 ATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTGGTGGCTAAAATCTGCT
1 ATCT---A----CAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCT
* * * *
38304952 TCCCCCTATCTTGGAAAGATAAGATTTGCCGGCTTCAATTTGTTCCACTACTGCTTAGGAAGATA
59 TCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATA
* * * *
38305017 GGATCTACAA-C-CT-A-C-TC-CGCTGCTGCTCAGGGAGATAAGGCTTGGCGGCTTAAATCTGC
124 AGATCTACAATCTTTAACCTTCTCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGC
* * *
38305076 TTCCCCCTATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGAT
189 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGAAGAT
38305141 AGG
254 AGG
* *
38305144 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
* * *
38305209 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGATAGGATCTA
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
* * * *
38305274 CAA-C-CT-A-C-TC-CGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCAC
131 CAATCTTTAACCTTCTCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAC
* *
38305333 TATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGTTCCACTACTGCTTAGGAAGATAGG
196 TATCTTGGAAAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGAAGATAGG
* *
38305394 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGGCAAGGCTTTGTGGCTTAAATCTACTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
* * *
38305459 ATCTTGGAAAGATAAGATTTGTCGTCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTA
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
* *
38305524 CAATCTTTAACCTTCTCTGCTGCTGCTCAGGGAAACAAGGCTTGGTGGCTGAAATCTGCTTCCCA
131 CAATCTTTAACCTTCTC-GCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCA
* *
38305589 CTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGG
195 CTATCTTGGAAAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGAAGATAGG
*
38305651 ATCTACAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
1 ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
* * *
38305716 ATCTTGGAAAGATAAGATTTGCCATCTTCGATTTGCTCTACTACTGCTTAGGGAGATAAGATCTA
66 ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
* *
38305781 CAATCTTCAACCTTCTCCGCTGTTGCTCAGGGAGACAAGGCTTGGTG
131 CAATCTTTAACCTTCT-CGCTGCTGCTCAGGGAGACAAGGCTTGGTG
38305828 TTTCACCAGT
Statistics
Matches: 854, Mismatches: 72, Indels: 30
0.89 0.08 0.03
Matches are distributed among these distances:
250 358 0.42
251 1 0.00
252 1 0.00
253 1 0.00
254 2 0.00
255 2 0.00
256 1 0.00
257 369 0.43
258 1 0.00
259 2 0.00
260 1 0.00
261 1 0.00
263 1 0.00
264 113 0.13
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (256 bp):
ATCTACAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACT
ATCTTGGAAAGATAAGATTTGCCGTCTTCAATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
CAATCTTTAACCTTCTCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAC
TATCTTGGAAAGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGAAGATAGG
Found at i:38307095 original size:8 final size:7
Alignment explanation
Indices: 38307070--38307119 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
38307060 TCCATTTTAC
38307070 TTTTTCA
1 TTTTTCA
*
38307077 TTTTTTA
1 TTTTTCA
38307084 TTTTTCA
1 TTTTTCA
38307091 CTTTTTCA
1 -TTTTTCA
38307099 TTTTTTCA
1 -TTTTTCA
*
38307107 TTTCGTCA
1 TTT-TTCA
38307115 TTTTT
1 TTTTT
38307120 TTTCGACTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 16 0.44
8 20 0.56
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.72
Consensus pattern (7 bp):
TTTTTCA
Found at i:38307104 original size:22 final size:22
Alignment explanation
Indices: 38307064--38307109 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
38307054 AGCCTCTCCA
38307064 TTTTACTTTTTCATTTTTT-AT
1 TTTTACTTTTTCATTTTTTCAT
38307085 TTTTCACTTTTTCATTTTTTCAT
1 TTTT-ACTTTTTCATTTTTTCAT
38307108 TT
1 TT
38307110 CGTCATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.17
22 15 0.65
23 4 0.17
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTACTTTTTCATTTTTTCAT
Found at i:38307118 original size:22 final size:21
Alignment explanation
Indices: 38307071--38307119 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
38307061 CCATTTTACT
*
38307071 TTTTCATTTTTTATTTTTCAC
1 TTTTCATTTTTTATTTGTCAC
*
38307092 TTTTTCATTTTTTCATTTCGTCAT
1 -TTTTCATTTTTT-ATTT-GTCAC
38307116 TTTT
1 TTTT
38307120 TTTCGACTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 12 0.52
23 8 0.35
24 3 0.13
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTCATTTTTTATTTGTCAC
Found at i:38312023 original size:19 final size:21
Alignment explanation
Indices: 38311985--38312023 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
38311975 CCTTTTTTAA
*
38311985 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
38312006 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
38312024 AAGAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:38312247 original size:21 final size:21
Alignment explanation
Indices: 38312221--38312296 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
38312211 AATCATATTT
38312221 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATATCATA
*
38312242 TCTAAGATTGCATATATCATA
1 TCTAAGATTGTATATATCATA
*
38312263 TCTAAGATTG--CATATCATA
1 TCTAAGATTGTATATATCATA
38312282 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
38312297 CCTCGAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 18 0.36
21 32 0.64
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:38312256 original size:19 final size:19
Alignment explanation
Indices: 38312234--38312297 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
38312224 AAGATTGTAT
38312234 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
38312253 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
*
38312274 ATATCATATCTAAGATTGT
1 ATATCATATCTAAGATTGC
38312293 ATATC
1 ATATC
38312298 CTCGAAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:38313120 original size:19 final size:21
Alignment explanation
Indices: 38313086--38313125 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
38313076 AGAAAGAAAA
38313086 AAATCAAGGAAAAAAAACAAG
1 AAATCAAGGAAAAAAAACAAG
38313107 AAATC-AGG-AAAAAAACAAG
1 AAATCAAGGAAAAAAAACAAG
38313126 TTCTACCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 3 0.16
21 5 0.26
ACGTcount: A:0.70, C:0.10, G:0.15, T:0.05
Consensus pattern (21 bp):
AAATCAAGGAAAAAAAACAAG
Found at i:38314917 original size:34 final size:34
Alignment explanation
Indices: 38314878--38314951 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
38314868 ATTGATTTAC
*
38314878 ATATTTGACAACTTAAATATAAA-TTGT-TTTATTT
1 ATATTTGAC-A-TTAAATATAAACATGTGTTTATTT
* *
38314912 ATATTTTACATTATATATAAACATGTGTTTATTT
1 ATATTTGACATTAAATATAAACATGTGTTTATTT
38314946 ATATTT
1 ATATTT
38314952 AAATATTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 10 0.29
33 4 0.11
34 21 0.60
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.53
Consensus pattern (34 bp):
ATATTTGACATTAAATATAAACATGTGTTTATTT
Found at i:38315206 original size:84 final size:83
Alignment explanation
Indices: 38315063--38315708 Score: 378
Period size: 89 Copynumber: 7.6 Consensus size: 83
38315053 AAAAATATAT
* * * * * *
38315063 AATTAAAT-AAATTTGTTTTGGGATTT-TTCCCGCCGTTCAACAGATTTTTTTCTCTATTTTGTT
1 AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAATAGA-TTTTAT-TCAATTTTGTT
38315126 TTATTTCCAAACGAATATTAA
64 TTATTTCCAAACGAA-ATTAA
* * * * * * **
38315147 AACTAAATAAAATCTATTTTGAGATTTACTCCCCCCGTTTAATAGATTTTATT---TGAT-TTTT
1 AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAATAGATTTTATTCAATTTTGTTTT
*
38315208 -TTT-C---C-AAATTCA
66 ATTTCCAAACGAAATTAA
* * * * * *
38315220 AAGTAAATAAAAT-TCGTTTCGGGATTTATTCACGTCGTTCAA-CGTATTTTATTCCATTTT-TT
1 AATTAAATAAAATCT-ATTTCGGGATTTATTCCCGCCGTTCAATAG-ATTTTATTCAATTTTGTT
38315282 ATTATTTCCAAACAGGAAATTAA
64 -TTATTTCCAAAC--GAAATTAA
* * * * * *
38315305 AGTTAAATATAATCCATTTCGGGATTTATTCCCACTGTTCAA-CGAATTTTATTCCAATTTTGAT
1 AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAATAG-ATTTTATT-CAATTTTG-T
* *
38315369 TTTATTTTCAAAAACGAGTATTAA
63 TTTA-TTTC-CAAACGA-AATTAA
* *
38315393 AATTAAAATAAAATC-AGTTTCGGGATTTATTCCCGTCGTTCAATAAATTTTATTACAATTTTGA
1 AATT-AAATAAAATCTA-TTTCGGGATTTATTCCCGCCGTTCAATAGATTTTATT-CAATTTTG-
* *
38315457 TTTTATTTCTATAAAACGAGTATTAA
62 TTTTATTTC---CAAACGA-AATTAA
* * *
38315483 AATTAAAATAAAATCTATTTCGAGATTTATTCCTGCCGTTCAACAGA-TTTATT-ACATTTTGAT
1 AATT-AAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAATAGATTTTATTCA-ATTTTG-T
* *
38315546 TTTGTTGCCAAAAACGAGAAATTAA
63 TTTATTTCC--AAAC--GAAATTAA
* * * ** *
38315571 AATTAAATAAAATCTATTTTGGGATTTATTCCCGCCGTTTAACAAGATTTTATTTTATTTTATTT
1 AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAA-TAGATTTTATTCAATTTTGTTT
* * **
38315636 TGTTTCTAAATTAGAATT-A
65 TATTTCCAAACGA-AATTAA
* * * * * *
38315655 AATTTAATAAAATCTATTTCAGAATTTATTCTCGCAGTTTAACTAGATTTTATT
1 AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAA-TAGATTTTATT
38315709 TGATATTTTT
Statistics
Matches: 450, Mismatches: 74, Indels: 76
0.75 0.12 0.13
Matches are distributed among these distances:
72 2 0.00
73 43 0.10
74 2 0.00
75 1 0.00
76 4 0.01
77 2 0.00
78 4 0.01
79 4 0.01
80 4 0.01
81 2 0.00
82 1 0.00
84 57 0.13
85 72 0.16
86 23 0.05
87 44 0.10
88 53 0.12
89 77 0.17
90 54 0.12
91 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (83 bp):
AATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAATAGATTTTATTCAATTTTGTTTT
ATTTCCAAACGAAATTAA
Found at i:38315354 original size:158 final size:157
Alignment explanation
Indices: 38315066--38315357 Score: 335
Period size: 158 Copynumber: 1.9 Consensus size: 157
38315056 AATATATAAT
* * * *
38315066 TAAATAAATTTGTTTTGGGATTTTTCCCGCCGTTCAACAGATTTTTTTCTCTATTTTGTTTTATT
1 TAAATAAATTCGTTTCGGGATTTTTCACGCCGTTCAACAGATTTTATTCTCTATTTTGTTTTATT
* * * * *
38315131 TCCAAACGAATATTAAAACTAAATAAAATCTATTTTGAGATTTACTCCCCCCGTTTAATAGATTT
66 TCCAAACGAATATTAAAACTAAATAAAATCCATTTCGAGATTTACTCCCACCGTTCAAGAGATTT
38315196 TATTTGATTTTTTTTCCAAATTCAAAG
131 TATTTGATTTTTTTTCCAAATTCAAAG
*
38315223 TAAATAAAATTCGTTTCGGGATTTATTCACGTCGTTCAAC-GTATTTTATTC-C-ATTTT-TTAT
1 TAAAT-AAATTCGTTTCGGGATTT-TTCACGCCGTTCAACAG-ATTTTATTCTCTATTTTGTT-T
** * * * *
38315284 TATTTCCAAACAGGAA-ATTAAAGTTAAATATAATCCATTTCGGGATTTATTCCCACTGTTCAAC
62 TATTTCCAAAC--GAATATTAAAACTAAATAAAATCCATTTCGAGATTTACTCCCACCGTTCAA-
38315348 GA-ATTTTATT
124 GAGATTTTATT
38315358 CCAATTTTGA
Statistics
Matches: 112, Mismatches: 16, Indels: 13
0.79 0.11 0.09
Matches are distributed among these distances:
156 2 0.02
157 22 0.20
158 63 0.56
159 25 0.22
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.44
Consensus pattern (157 bp):
TAAATAAATTCGTTTCGGGATTTTTCACGCCGTTCAACAGATTTTATTCTCTATTTTGTTTTATT
TCCAAACGAATATTAAAACTAAATAAAATCCATTTCGAGATTTACTCCCACCGTTCAAGAGATTT
TATTTGATTTTTTTTCCAAATTCAAAG
Found at i:38315515 original size:90 final size:88
Alignment explanation
Indices: 38315223--38315708 Score: 417
Period size: 89 Copynumber: 5.6 Consensus size: 88
38315213 AAATTCAAAG
* * * ** *
38315223 TAAATAAAAT-TCGTTTCGGGATTTATTCACGTCGTTCAACGTATTTTATT-CCATTTT--TTAT
1 TAAATAAAATCT-ATTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTACAATTTTGATT-T
* * * * *
38315284 TATTTCCAAACAGGA-AATTAAAGT
64 TATTTCTAAAAACGAGTATTAAAAT
* * * * * *
38315308 TAAATATAATCCATTTCGGGATTTATTCCCACTGTTCAACGAATTTTATTCCAATTTTGATTTTA
1 TAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTACAATTTTGATTTTA
38315373 TTT-TCAAAAACGAGTATTAAAAT
66 TTTCT-AAAAACGAGTATTAAAAT
* *
38315396 TAAAATAAAATC-AGTTTCGGGATTTATTCCCGTCGTTCAATAAATTTTATTACAATTTTGATTT
1 T-AAATAAAATCTA-TTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTACAATTTTGATTT
38315460 TATTTCTATAAAACGAGTATTAAAAT
64 TATTTCTA-AAAACGAGTATTAAAAT
* * *
38315486 TAAAATAAAATCTATTTCGAGATTTATTCCTGCCGTTCAACAGA-TTTATTAC-ATTTTGATTTT
1 T-AAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTACAATTTTGATTTT
* * * *
38315549 GTTGCCAAAAACGAGAAATTAAAAT
65 ATTTCTAAAAACGAG-TATTAAAAT
* * **
38315574 TAAATAAAATCTATTTTGGGATTTATTCCCGCCGTTTAACAAGATTTTATT-TTATTTT-ATTTT
1 TAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACAA-ATTTTATTACAATTTTGATTTT
* *
38315637 GTTTCTAAATTA-GA--ATT-AAAT
65 ATTTCTAAA-AACGAGTATTAAAAT
* * * * * * *
38315658 TTAATAAAATCTATTTCAGAATTTATTCTCGCAGTTTAACTAGATTTTATT
1 TAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAAC-AAATTTTATT
38315709 TGATATTTTT
Statistics
Matches: 338, Mismatches: 46, Indels: 35
0.81 0.11 0.08
Matches are distributed among these distances:
84 46 0.14
85 45 0.13
86 6 0.02
87 56 0.17
88 50 0.15
89 79 0.23
90 55 0.16
91 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (88 bp):
TAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTACAATTTTGATTTTA
TTTCTAAAAACGAGTATTAAAAT
Found at i:38315597 original size:177 final size:179
Alignment explanation
Indices: 38315224--38315624 Score: 434
Period size: 177 Copynumber: 2.3 Consensus size: 179
38315214 AATTCAAAGT
* * *
38315224 AAATAAAATTC-GTTTCGGGATTTATTCACGTCGTTCAAC--GTATTTTATT-CCATTTT--TTA
1 AAATAAAA-TCAGTTTCGGGATTTATTCCCGCCGTTCAACAAG-ATTTTATTACAATTTTGATT-
* * * * * * * *
38315283 TTATTTCCA-AACAGGA-AATTAAAGTTAAATATAATCCATTTCGGGATTTATTCCCACTGTTCA
63 TTATTTCTATAAAACGAGTATTAAAATTAAATAAAATCCATTTCGAGATTTATTCCCACCGTTCA
* ** *
38315346 ACGAATTTTATTCCAATTTTGATTTTATTTTCAAAAACGAGTATTAAAATTA
128 ACGAATTTTATTACAATTTTGATTTTATTGCCAAAAACGAGAATTAAAATTA
* *
38315398 AAATAAAATCAGTTTCGGGATTTATTCCCGTCGTTCAATAA-ATTTTATTACAATTTTGATTTTA
1 AAATAAAATCAGTTTCGGGATTTATTCCCGCCGTTCAACAAGATTTTATTACAATTTTGATTTTA
* **
38315462 TTTCTATAAAACGAGTATTAAAATTAAAATAAAATCTATTTCGAGATTTATTCCTGCCGTTCAAC
66 TTTCTATAAAACGAGTATTAAAATT-AAATAAAATCCATTTCGAGATTTATTCCCACCGTTCAAC
*
38315527 -AGA-TTTATTAC-ATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATT-
130 GA-ATTTTATTACAATTTTGATTTTATTGCCAAAAACGAG-AATTAAAATTA
* *
38315575 AAATAAAATCTA-TTTTGGGATTTATTCCCGCCGTTTAACAAGATTTTATT
1 AAATAAAATC-AGTTTCGGGATTTATTCCCGCCGTTCAACAAGATTTTATT
38315625 TTATTTTATT
Statistics
Matches: 191, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
173 2 0.01
174 42 0.22
175 6 0.03
176 8 0.04
177 65 0.34
178 34 0.18
179 34 0.18
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (179 bp):
AAATAAAATCAGTTTCGGGATTTATTCCCGCCGTTCAACAAGATTTTATTACAATTTTGATTTTA
TTTCTATAAAACGAGTATTAAAATTAAATAAAATCCATTTCGAGATTTATTCCCACCGTTCAACG
AATTTTATTACAATTTTGATTTTATTGCCAAAAACGAGAATTAAAATTA
Found at i:38321102 original size:30 final size:30
Alignment explanation
Indices: 38321066--38321151 Score: 102
Period size: 33 Copynumber: 2.8 Consensus size: 30
38321056 TAATAGGGAT
*
38321066 GACTTAATTGATCTTTAATTATTTTACAAAG
1 GACTTAATTGATTTTTAATTATTTTA-AAAG
*
38321097 G-CTTAATTAAATTTTTTAAATTATTTTAAAAG
1 GACTTAATT-GA-TTTTT-AATTATTTTAAAAG
*
38321129 GACTTACTTGATTTTTAATTATT
1 GACTTAATTGATTTTTAATTATT
38321152 GAAGCCTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
30 14 0.30
31 7 0.15
32 10 0.21
33 16 0.34
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.50
Consensus pattern (30 bp):
GACTTAATTGATTTTTAATTATTTTAAAAG
Found at i:38321303 original size:9 final size:8
Alignment explanation
Indices: 38321291--38321338 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 8
38321281 TGAACATATT
38321291 ATATAAATA
1 ATATAAA-A
38321300 ATATAAAA
1 ATATAAAA
* *
38321308 TTTTAAAA
1 ATATAAAA
38321316 ATATAAAAA
1 ATAT-AAAA
38321325 ACTATAAAA
1 A-TATAAAA
38321334 ATATA
1 ATATA
38321339 TCAAAGAGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
8 13 0.39
9 17 0.52
10 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
ATATAAAA
Found at i:38329297 original size:190 final size:189
Alignment explanation
Indices: 38328975--38329353 Score: 704
Period size: 190 Copynumber: 2.0 Consensus size: 189
38328965 TATGGGTATG
38328975 TTCTTTATTTTTGATGCCCCTTATTTTACATTGATAGACATAGGTCAACACATTCCTATGTAGCT
1 TTCTTTATTTTTGATGCCCCTTATTTTACATTGATAGACATAGGTCAACACATTCCTATGTAGCT
38329040 AGTTCTATTTTTGTAAACTTTCAGATTCCTGTTAAGAGCACTTCCGATGAAATTTCTGTACTTAG
66 AGTTCTATTTTTGTAAACTTTCAGATTCCTGTTAAGAGCACTTCCGATGAAATTTCTGTACTTAG
* *
38329105 TTCGTTAAGTCAATCTGTTTGGGTGAATAGATTGTATAAGAATATACCGTTGTATGTAC
131 TTCGTTAAGTCAATCTGTTCGGGTGAATAGATTGTATAAGAATATACCGTTGGATGTAC
38329164 TTCTTTATTTTTGATGCCCCTTATTTTACATTGATAGACATAGGGTCAACACATTCCTATGTAGC
1 TTCTTTATTTTTGATGCCCCTTATTTTACATTGATAGACATA-GGTCAACACATTCCTATGTAGC
* *
38329229 TAGTTCTATTTTTGTAAACTTTCAGATTCCTGTTAAGAGCACTTCCGATGAGATTTTTGTACTTA
65 TAGTTCTATTTTTGTAAACTTTCAGATTCCTGTTAAGAGCACTTCCGATGAAATTTCTGTACTTA
*
38329294 GTTCGTTAAGTCAATTTGTTCGGGTGAATAGATTGTATAAGAATATACCGTTGGATGTAC
130 GTTCGTTAAGTCAATCTGTTCGGGTGAATAGATTGTATAAGAATATACCGTTGGATGTAC
38329354 AAAGGGTTGT
Statistics
Matches: 184, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
189 42 0.23
190 142 0.77
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (189 bp):
TTCTTTATTTTTGATGCCCCTTATTTTACATTGATAGACATAGGTCAACACATTCCTATGTAGCT
AGTTCTATTTTTGTAAACTTTCAGATTCCTGTTAAGAGCACTTCCGATGAAATTTCTGTACTTAG
TTCGTTAAGTCAATCTGTTCGGGTGAATAGATTGTATAAGAATATACCGTTGGATGTAC
Found at i:38347345 original size:31 final size:31
Alignment explanation
Indices: 38347248--38347345 Score: 75
Period size: 31 Copynumber: 3.4 Consensus size: 31
38347238 TTTGATTAAT
* *
38347248 TATAGATATACATTGCCGAATTTGAA-TGT-
1 TATAGATATATATTGCCGAATTCGAATTGTA
* *
38347277 T-T---TATATTTTGCCGAATTCGAATTGTT
1 TATAGATATATATTGCCGAATTCGAATTGTA
* *
38347304 TATAGTTATATATTGTCGAAGTT-GAATTGTA
1 TATAGATATATATTGCCGAA-TTCGAATTGTA
*
38347335 TATGGATATAT
1 TATAGATATAT
38347346 TAATTCGTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 17 0.31
26 3 0.06
27 1 0.02
28 2 0.04
29 1 0.02
31 28 0.52
32 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (31 bp):
TATAGATATATATTGCCGAATTCGAATTGTA
Found at i:38347511 original size:92 final size:92
Alignment explanation
Indices: 38347348--38347598 Score: 394
Period size: 92 Copynumber: 2.7 Consensus size: 92
38347338 GGATATATTA
* *
38347348 ATTCGTATATGGTTGAACACTGCTGAAAATAATTTTTTATATGGTTATACATTGCTGAAATTGAA
1 ATTCGTATATGGTTGAACATTGCTGAAAATAA-TTTATATATGGTTATACATTGCTGAAATTGAA
* *
38347413 TTGTATATGTATATTAGTTGCCGAAATG
65 TTGTATATGTACATAAGTTGCCGAAATG
*
38347441 ATTCGTATATGGTTGAACATTGCTGAAAATAATTTATATATGGTTGTACATTGCTGAAATTGAAT
1 ATTCGTATATGGTTGAACATTGCTGAAAATAATTTATATATGGTTATACATTGCTGAAATTGAAT
*
38347506 TGTATATGTACATAAGTTGTCGAAATG
66 TGTATATGTACATAAGTTGCCGAAATG
* * * * *
38347533 ATTCATATATGGTTGAACATTGCTGAAAATAATTTGTATATGGGTATACATTGTTGAAATTAAAT
1 ATTCGTATATGGTTGAACATTGCTGAAAATAATTTATATATGGTTATACATTGCTGAAATTGAAT
38347598 T
66 T
38347599 ATTTATGAAT
Statistics
Matches: 146, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
92 115 0.79
93 31 0.21
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (92 bp):
ATTCGTATATGGTTGAACATTGCTGAAAATAATTTATATATGGTTATACATTGCTGAAATTGAAT
TGTATATGTACATAAGTTGCCGAAATG
Found at i:38347584 original size:31 final size:31
Alignment explanation
Indices: 38347346--38347591 Score: 156
Period size: 31 Copynumber: 8.0 Consensus size: 31
38347336 ATGGATATAT
* *
38347346 TAATTCGTATATGGTTGA-ACACTGCTGAAAA
1 TAATTTGTATATGGTT-ATACATTGCTGAAAA
* *
38347377 TAATTTTTTATATGGTTATACATTGCTGAAAT
1 TAA-TTTGTATATGGTTATACATTGCTGAAAA
* *
38347409 TGAA-TTGTATAT-GTATATTA-GTTGCCG-AAA
1 T-AATTTGTATATGGT-TA-TACATTGCTGAAAA
* *
38347439 TGATTCGTATATGGTTGA-ACATTGCTGAAAA
1 TAATTTGTATATGGTT-ATACATTGCTGAAAA
* * *
38347470 TAATTTATATATGGTTGTACATTGCTGAAAT
1 TAATTTGTATATGGTTATACATTGCTGAAAA
*
38347501 TGAA-TTGTATAT-GTACATA-AGTTG-TCG-AAA
1 T-AATTTGTATATGGT-TATACA-TTGCT-GAAAA
* **
38347531 TGATTCATATATGGTTGA-ACATTGCTGAAAA
1 TAATTTGTATATGGTT-ATACATTGCTGAAAA
* *
38347562 TAATTTGTATATGGGTATACATTGTTGAAA
1 TAATTTGTATATGGTTATACATTGCTGAAA
38347592 TTAAATTATT
Statistics
Matches: 163, Mismatches: 30, Indels: 44
0.69 0.13 0.19
Matches are distributed among these distances:
29 3 0.02
30 37 0.23
31 94 0.58
32 27 0.17
33 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.40
Consensus pattern (31 bp):
TAATTTGTATATGGTTATACATTGCTGAAAA
Found at i:38347592 original size:61 final size:61
Alignment explanation
Indices: 38347348--38347592 Score: 184
Period size: 61 Copynumber: 4.0 Consensus size: 61
38347338 GGATATATTA
* * *
38347348 ATTCGTATATGGTTGAACACTGCTGAAAATAATTTTTTATATGGTTATACATTGCTGAAATTG
1 ATTCATATATGGTTGAACATTGCTGAAAATAA-TTTGTATATGGTTATACATTGCTGAAA-TG
* ** * * *
38347411 AATT-GTATAT-GTAT-ATTAGTTGCCG-AAATGATTCGTATATGGTTGA-ACATTGCTGAAAAT
1 -ATTCATATATGGT-TGAACA-TTGCTGAAAATAATTTGTATATGGTT-ATACATTGCTG-AAAT
*
38347471 A
61 G
* * * *
38347472 ATTTATATATGGTTGTACATTGCTGAAATTGAA-TTGTATAT-GTACATA-AGTTG-TCGAAATG
1 ATTCATATATGGTTGAACATTGCTGAAAAT-AATTTGTATATGGT-TATACA-TTGCT-GAAATG
* *
38347533 ATTCATATATGGTTGAACATTGCTGAAAATAATTTGTATATGGGTATACATTGTTGAAAT
1 ATTCATATATGGTTGAACATTGCTGAAAATAATTTGTATATGGTTATACATTGCTGAAAT
38347593 TAAATTATTT
Statistics
Matches: 141, Mismatches: 23, Indels: 37
0.70 0.11 0.18
Matches are distributed among these distances:
60 5 0.04
61 87 0.62
62 34 0.24
63 12 0.09
64 3 0.02
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (61 bp):
ATTCATATATGGTTGAACATTGCTGAAAATAATTTGTATATGGTTATACATTGCTGAAATG
Done.