Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 130 of 141
Found at i:39072638 original size:18 final size:18
Alignment explanation
Indices: 39072598--39072637 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
39072588 TTTTTGATGC
*
39072598 ATTTTATAATTTATATAT
1 ATTTTACAATTTATATAT
39072616 ATTTTACAATTTATATAT
1 ATTTTACAATTTATATAT
39072634 -TTTT
1 ATTTT
39072638 TCTTTCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTACAATTTATATAT
Found at i:39072688 original size:19 final size:18
Alignment explanation
Indices: 39072666--39072721 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 18
39072656 AATTTTAAAT
39072666 ATTTTTATA-TTTTTATTAA
1 ATTTTTATATTTTTTA-T-A
*
39072685 ATTTTAATATTTTTTATA
1 ATTTTTATATTTTTTATA
39072703 ATTTTTATTGATTTTTTAT
1 ATTTTTA-T-ATTTTTTAT
39072722 TTTTATTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 7 0.22
19 10 0.31
20 15 0.47
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTTTATATTTTTTATA
Found at i:39072700 original size:20 final size:20
Alignment explanation
Indices: 39072666--39072722 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
39072656 AATTTTAAAT
*
39072666 ATTTTTATA-TTTTTATTAA
1 ATTTTAATATTTTTTATTAA
39072685 ATTTTAATATTTTTTA-TAA
1 ATTTTAATATTTTTTATTAA
* *
39072704 TTTTTATTGATTTTTTATT
1 ATTTTAAT-ATTTTTTATT
39072723 TTTATTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 17 0.53
20 14 0.44
21 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTTAATATTTTTTATTAA
Found at i:39072717 original size:28 final size:28
Alignment explanation
Indices: 39072645--39072711 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
39072635 TTTTCTTTCT
*
39072645 TATTTTTAGTAAATTTTAA-ATATTTTTA
1 TATTTTTATTAAATTTTAATAT-TTTTTA
39072673 TATTTTTATTAAATTTTAATATTTTTTA
1 TATTTTTATTAAATTTTAATATTTTTTA
39072701 TAATTTTTATT
1 T-ATTTTTATT
39072712 GATTTTTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 25 0.69
29 11 0.31
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (28 bp):
TATTTTTATTAAATTTTAATATTTTTTA
Found at i:39089335 original size:25 final size:25
Alignment explanation
Indices: 39089307--39089354 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
39089297 ATGCGGAAGT
39089307 GGATCGTAAAGTTTGCAAAAGTCGC
1 GGATCGTAAAGTTTGCAAAAGTCGC
*
39089332 GGATCGTAAAGTTTGCCAAAGTC
1 GGATCGTAAAGTTTGCAAAAGTC
39089355 ACAGATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (25 bp):
GGATCGTAAAGTTTGCAAAAGTCGC
Found at i:39089735 original size:17 final size:17
Alignment explanation
Indices: 39089713--39089756 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
39089703 AGATTCATCC
39089713 TCGAATCTTGTCTTTGA
1 TCGAATCTTGTCTTTGA
39089730 TCGAATCTTGTCTTTGA
1 TCGAATCTTGTCTTTGA
39089747 TCGAATCTTG
1 TCGAATCTTG
39089757 ATTTGATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (17 bp):
TCGAATCTTGTCTTTGA
Found at i:39092999 original size:14 final size:15
Alignment explanation
Indices: 39092977--39093015 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
39092967 TTCAAGTCAG
39092977 ATAAAATAATTAAAA
1 ATAAAATAATTAAAA
*
39092992 AT-AAATAACTAAAA
1 ATAAAATAATTAAAA
39093006 ATAAAATAAT
1 ATAAAATAAT
39093016 AAACCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAATAATTAAAA
Found at i:39094730 original size:50 final size:50
Alignment explanation
Indices: 39094651--39094822 Score: 211
Period size: 50 Copynumber: 3.4 Consensus size: 50
39094641 CATTTGGGTA
* *
39094651 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
39094701 AAGAGGTCCCATGTAAGACCTTGTTTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
** * * * *
39094751 GAA-AGGTCCCCCGTAAGACCATGTCTGGGAGATGGCATGGGCACCGATAT
1 -AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* **
39094801 GAGAACTCCCATGTAAGACCAT
1 AAGAGGTCCCATGTAAGACCAT
39094823 ATTTGGGATA
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 100 0.97
51 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:39094843 original size:100 final size:100
Alignment explanation
Indices: 39094663--39094843 Score: 236
Period size: 100 Copynumber: 1.8 Consensus size: 100
39094653 GAGATCCCAT
** * ** * *
39094663 GTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCTTGTTTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGACCATATTTG
**
39094728 GGACATGGCGTTGGCACCGAGATGAAAGGTCCCCC
66 GGACATGGCACTGGCACCGAGATGAAAGGTCCCCC
* * *
39094763 GTAAGACCATGTCTGGGAGATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATTTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGACCATATTTG
* *
39094828 GGATATGTCACTGGCA
66 GGACATGGCACTGGCA
39094844 GTACAAGAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 67 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGACCATATTTG
GGACATGGCACTGGCACCGAGATGAAAGGTCCCCC
Found at i:39094931 original size:81 final size:81
Alignment explanation
Indices: 39094796--39094958 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
39094786 CATGGGCACC
39094796 GATATGAGAACTCCCATGTAAGACCATATTTGGGATATGTCACTGGCAGTACAAGAAACATCCCA
1 GATATGAGAACTCCCATGTAAGACCATATTTGGGATATGTCACTGGCAGTACAAGAAACATCCCA
39094861 TATAAGACTATGTTTG
66 TATAAGACTATGTTTG
39094877 GATATGAGAACTCCCATGTAAGACCATATTTGGGATATGTCACTGGCAGTACAAGAAACATCCCA
1 GATATGAGAACTCCCATGTAAGACCATATTTGGGATATGTCACTGGCAGTACAAGAAACATCCCA
39094942 TATAAGACTATGTTTG
66 TATAAGACTATGTTTG
39094958 G
1 G
39094959 GACATAGCTT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (81 bp):
GATATGAGAACTCCCATGTAAGACCATATTTGGGATATGTCACTGGCAGTACAAGAAACATCCCA
TATAAGACTATGTTTG
Found at i:39099567 original size:30 final size:30
Alignment explanation
Indices: 39099532--39099589 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
39099522 AAAGGAAAAT
39099532 TGAACTAACTTATGCTTAACAACTTGCTAA
1 TGAACTAACTTATGCTTAACAACTTGCTAA
39099562 TGAACTAACTTATGCTTAACAACTTGCT
1 TGAACTAACTTATGCTTAACAACTTGCT
39099590 TTTAGCGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (30 bp):
TGAACTAACTTATGCTTAACAACTTGCTAA
Found at i:39101619 original size:17 final size:17
Alignment explanation
Indices: 39101597--39101629 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
39101587 TAATCTTATT
39101597 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
39101614 AAATATAATTTAATAA
1 AAATATAATTTAATAA
39101630 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:39101856 original size:16 final size:16
Alignment explanation
Indices: 39101835--39101866 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
39101825 ATTAAGAATG
39101835 TTATTAAATTATATTT
1 TTATTAAATTATATTT
39101851 TTATTAAATTATATTT
1 TTATTAAATTATATTT
39101867 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:39104141 original size:19 final size:19
Alignment explanation
Indices: 39104109--39104159 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
39104099 TTTTTACTTG
* *
39104109 TTTTTCCTTCTCTTTTTTTA
1 TTTTT-CTTTTCTTTTTTCA
*
39104129 TTTTTCTTTTC-TTTTTCG
1 TTTTTCTTTTCTTTTTTCA
39104147 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
39104160 AAGAATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 16 0.59
19 6 0.22
20 5 0.19
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTTCTTTTCTTTTTTCA
Found at i:39106587 original size:33 final size:33
Alignment explanation
Indices: 39106541--39106627 Score: 111
Period size: 33 Copynumber: 2.6 Consensus size: 33
39106531 GAAAATCCTT
*
39106541 TATTTACTTTTGGAAATCAAGAGTTTACCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* * **
39106574 TATTTGCTGTTGGAAATCAACAGTTTGTCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* *
39106607 TATCTATTGTTGGAAATCAAG
1 TATTTACTGTTGGAAATCAAG
39106628 CACATTAGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (33 bp):
TATTTACTGTTGGAAATCAAGAGTTTACCATTG
Found at i:39108173 original size:37 final size:37
Alignment explanation
Indices: 39108132--39108212 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
39108122 ATTATGAAAC
*
39108132 ATAAAAAATATATAAAAGTATGT-GTATATATATAT-TT
1 ATAAAAAA-AT-TAAAAATATGTAGTATATATATATATT
* *
39108169 ATAAAAAAATTAAAAATGTGTACGTATATGTATATATT
1 ATAAAAAAATTAAAAATATGTA-GTATATATATATATT
39108207 ATAAAA
1 ATAAAA
39108213 CGTATGTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 9 0.24
36 2 0.05
37 19 0.50
38 8 0.21
ACGTcount: A:0.53, C:0.01, G:0.09, T:0.37
Consensus pattern (37 bp):
ATAAAAAAATTAAAAATATGTAGTATATATATATATT
Found at i:39109396 original size:44 final size:45
Alignment explanation
Indices: 39109344--39109456 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 45
39109334 GATCTACTTT
* * *
39109344 ACTGCAACTTCAGAGAGATAAGATCTACT-ATTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* *
39109388 ACTGCAACTTCAGGGAGATAGGAT-TACTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* * *
39109432 ATTTCAACTT-AGGGAGATAAAATCT
1 ACTGCAACTTCAGGGAGATAAGATCT
39109457 TTAATTTTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
43 15 0.26
44 43 0.74
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
Found at i:39109608 original size:44 final size:44
Alignment explanation
Indices: 39109560--39110859 Score: 471
Period size: 44 Copynumber: 30.2 Consensus size: 44
39109550 CTTCGATCTG
* * * * ** *
39109560 CTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
39109604 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
39109648 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
* * * * *
39109692 CTCCACTGCTGCTCAGGGAGATAAGG-C-A-AGTGGGTTAAATCTG
1 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAAT--CTTCAACCTA
* * * * * ** * * *
39109735 CTTCC-CTACTAC-CTTGGGAAGATAAGAATC-GCCGTCTTCGATCTG
1 C-TCCACTGCTGCTC-AGGG-AGATAAG-GTCTACAATCTTCAACCTA
* * * * * ** *
39109780 CTCTACT-ATAACTTAGGGAGATAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
*
39109824 CTTCACTGCTGCTCAGGGAGAT-AGGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGG-TCT-ACAATCTTCAACCTA
* * *
39109868 TTCCACTGTTGACT-AGGGAGAT-AGGACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
*
39109912 CTCCACTGCTGAC-CAGGGAGAT-AGGACTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
*
39109956 TTCCACTGCTGAC-CAGGGAGAT-A-GTACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGT-CT-ACAATCTTCAACCTA
* * *
39110000 TTCCACTGCTGAC-CAGGGAGAT-AGGACTCACAATCTTCAGCCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
* *
39110044 TTCCATTGCTGAC-CAGGGAGAT-A-G-----AA--TTC-ACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCTACAATCTTCAACCTA
* ** * *
39110078 TTCCACTGCTGGC-CAGGGAGAT-AGAACTTACAATATTCAACTTA
1 CTCCACTGCT-GCTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* * **** * * *
39110122 TTCCACTACTGACT-AGGGAGATAAGG-CTAGTGGCTTAAATCTGC
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCTACAATCTTCAACCT-A
* * * * ** * * *
39110166 CTCC-CTACTAC-CTTGGGAAGATAAGAT-TCACCGTCTTCGATCTG
1 CTCCACTGCTGCTC-AGGG-AGATAAGGTCT-ACAATCTTCAACCTA
* * * * ** * *
39110210 CTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTAAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
*
39110254 CTCCACTGCTGCTCAGGGAGAT-AGGAT-TCATAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGG-TCT-ACAATCTTCAACCTA
* * * *
39110298 TTCCACTGTTAAC-CAGGGAGAT-AGG------A--TTC-TCCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
* * * * *
39110332 TTCCACTGCTAAC-CAGGGATAT-AGGACTTACAATCTTCAACTTA
1 CTCCACTGCT-GCTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* * * *
39110376 TTCCACTGCTGAC-CAGGAAGAT-ATGACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
* * *
39110420 TTCCACTGCTGAC-CAGGGAGAT-AGGACTCAAAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
* * * *
39110464 TTCCACTACTGACT-AGGGAGAT-ATGACTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* * *
39110508 TTCCACTGCTGAC-CAGAGAGAT-AGGACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
* *
39110552 TTCCACTGCTAAC-CAGGGAGA-AAGG------A--TTC-ACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
* * *
39110586 TTTCACTGCTGACT-AGGGAGAT-AGGACTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* *
39110630 TTCCACTGCTGAC-CAGGGAGAT-AGGACTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* * *
39110674 TTCCACTGCTGAC-CAGGGAGATAA-GACTTACAATCTGCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
* *
39110718 TTCCACTGCTGAC-CAGGGAGAT-AGGACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTCT-ACAATCTTCAACCTA
* * * * * *
39110762 TTCCACTACTGAC-CAGGAAGAT-AGGAT-TCACCATCTTCAGCATA
1 CTCCACTGCTG-CTCAGGGAGATAAGG-TCT-ACAATCTTCAACCTA
* * * *
39110806 TTCCACTGCTGACT-AGGAAGGT-AGGACTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGGTC-TACAATCTTCAACCTA
*
39110850 TTCCACTGCT
1 CTCCACTGCT
39110860 AACCAGAGAG
Statistics
Matches: 1031, Mismatches: 138, Indels: 174
0.77 0.10 0.13
Matches are distributed among these distances:
34 76 0.07
35 10 0.01
37 4 0.00
41 6 0.01
42 3 0.00
43 57 0.06
44 827 0.80
45 45 0.04
46 1 0.00
47 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
Found at i:39109919 original size:88 final size:88
Alignment explanation
Indices: 39109815--39110872 Score: 1025
Period size: 88 Copynumber: 12.4 Consensus size: 88
39109805 ATCTGTAATT
*
39109815 TTCAACCTACTT-CACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGTT
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCT
*
39109878 GACTAGGGAGATAGGACTCACAATC
64 GACCAGGGAGATAGGACTCACAATC
*
39109903 TTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
*
39109967 ACCAGGGAGATAGTACTCACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * *
39109991 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAGCCTATTCCATTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
39110056 CCAGGGAGATA-G------AA--
66 CCAGGGAGATAGGACTCACAATC
* * * * *
39110070 TTC-ACCTATTCCACTGCTGGCCAGGGAGATAGAACTT-ACAATATTCAACTTATTCCACTACTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
* ****
39110133 ACTAGGGAGATAAGG-CT-AGTGGC
65 ACCAGGGAGAT-AGGACTCACAATC
* * ** * * * ** * * ** * *
39110156 TTAAATCTGCCTCC-CTACT-ACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCTACTAC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGATTCACAATCTTCAACCTATTCCACTGC
* * ** *
39110219 TG-CTTAGGGAGATAAGA-TCTGTAATT
63 TGAC-CAGGGAGATAGGACTC-ACAATC
* * * * *
39110245 TTAAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGTTA
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
39110309 ACCAGGGAGATAGGA-T-----TC
65 ACCAGGGAGATAGGACTCACAATC
* * *
39110327 -T---CCTATTCCACTGCTAACCAGGGATATAGGACTT-ACAATCTTCAACTTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
* *
39110387 ACCAGGAAGATATGACTCACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * *
39110411 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * *
39110476 CTAGGGAGATATGACTTACAATC
66 CCAGGGAGATAGGACTCACAATC
* * *
39110499 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
*
39110564 CCAGGGAGAAAGG-------A--
66 CCAGGGAGATAGGACTCACAATC
* *
39110578 TTC-ACCTATTTCACTGCTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
*
39110641 ACCAGGGAGATAGGACTTACAATC
65 ACCAGGGAGATAGGACTCACAATC
* *
39110665 TTCAACCTATTCCACTGCTGACCAGGGAGATAAGACTT-ACAATCTGCAACCTATTCCACTGCTG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
39110729 ACCAGGGAGATAGGACTCACAATC
65 ACCAGGGAGATAGGACTCACAATC
* * * * *
39110753 TTCAACCTATTCCACTACTGACCAGGAAGATAGGATTCACCATCTTCAGCATATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * * *
39110818 CTAGGAAGGTAGGACTTACAATC
66 CCAGGGAGATAGGACTCACAATC
* *
39110841 TTCAACCTATTCCACTGCTAACCAGAGAGATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA
39110873 AAGCTTTGTG
Statistics
Matches: 804, Mismatches: 115, Indels: 102
0.79 0.11 0.10
Matches are distributed among these distances:
78 186 0.23
79 13 0.02
80 1 0.00
81 4 0.00
82 1 0.00
84 2 0.00
85 2 0.00
86 4 0.00
87 24 0.03
88 547 0.68
89 19 0.02
90 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (88 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGACTCACAATC
Found at i:39110088 original size:34 final size:35
Alignment explanation
Indices: 39110035--39110103 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 35
39110025 ACTCACAATC
*
39110035 TTCAGCCTATTCCATTGCTGACCAGGGAGATAGAA
1 TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
*
39110070 TTCA-CCTATTCCACTGCTGGCCAGGGAGATAGAA
1 TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
39110104 CTTACAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (35 bp):
TTCAGCCTATTCCACTGCTGACCAGGGAGATAGAA
Found at i:39110276 original size:254 final size:253
Alignment explanation
Indices: 39109819--39110815 Score: 1051
Period size: 254 Copynumber: 3.9 Consensus size: 253
39109809 GTAATTTTCA
* *
39109819 ACCTACTT-CACTGCTG-CTCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGTTGAC
1 ACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACTTATTCCACTGCTGAC
* * * * * * * *
39109881 TAGGGAGATAGGACTCACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTACAAT
63 CAGGGAGATAAGACTCACAAGCTTAAACCTACTCCACTACTGACCAGGGAGATAAGACTCAAAAT
* * * * *
39109946 CTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGTACTCACAATCTTCAACCTATTCCACTGCT
128 CTTCAACCTACTCCACTACTGACTAGGGAGATAAG-ACTTA-AATCTTAAACCTATTCCACTGCT
* * * *
39110010 GACCAGGGAGATAGGACTCACAATCTTCAGCCTATTCCATTGCTGACCAGGGAGATAGAATTC
191 GACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGATTC
* * * * *
39110073 ACCTATTCCACTGCTGGCCAGGGAGATAGAACTTACAATATTCAACTTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
* *** * * * * ***
39110138 GGAGATAAGGCT-AGTGGCTTAAATCTGCCTCC-CTACT-ACCTTGGGAAGATAAGATTCACCGT
66 GGAGATAAGACTCACAAGCTTAAACCT-ACTCCACTACTGACC-AGGG-AGATAAGACTCAAAAT
* * * * * *
39110200 CTTCGATCTGCTCTACTACTG-CTTAGGGAGATAAGATCTGT-AATTTTAAACCTACTCCACTGC
128 CTTCAACCTACTCCACTACTGAC-TAGGGAGATAAGA-CT-TAAATCTTAAACCTATTCCACTGC
* * *
39110263 TG-CTCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGTTAACCAGGGAGATAGGATTC
190 TGAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGATTC
* * *
39110327 TCCTATTCCACTGCTAACCAGGGATATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
* * * * * * *
39110392 GAAGATATGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTT
66 GGAGATAAGACTCACAAGCTTAAACCTACTCCACTACTGACCAGGGAGATAAGACTCAAAATCTT
* * *
39110457 CAACCTATTCCACTACTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTGCTGACC
131 CAACCTACTCCACTACTGACTAGGGAGATAAGACTTA-AATCTTAAACCTATTCCACTGCTGACC
* *
39110522 AGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
195 AGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGATTC
* * *
39110581 ACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
* * * * * * * * *
39110646 GGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGACTTACAATCTG
66 GGAGATAAGACTCACAAGCTTAAACCTACTCCACTACTGACCAGGGAGATAAGACTCAAAATCTT
* * * * * * *
39110711 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACC
131 CAACCTACTCCACTACTGACTAGGGAGATAAGACTTA-AATCTTAAACCTATTCCACTGCTGACC
* * * * *
39110776 AGGAAGATAGGATTCACCATCTTCAGCATATTCCACTGCT
195 AGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCT
39110816 GACTAGGAAG
Statistics
Matches: 622, Mismatches: 103, Indels: 36
0.82 0.14 0.05
Matches are distributed among these distances:
252 4 0.01
253 21 0.03
254 570 0.92
255 24 0.04
256 3 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (253 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACTTATTCCACTGCTGACCAG
GGAGATAAGACTCACAAGCTTAAACCTACTCCACTACTGACCAGGGAGATAAGACTCAAAATCTT
CAACCTACTCCACTACTGACTAGGGAGATAAGACTTAAATCTTAAACCTATTCCACTGCTGACCA
GGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGATTC
Found at i:39110593 original size:34 final size:34
Alignment explanation
Indices: 39110547--39110611 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
39110537 ACAATCTTCA
39110547 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
* * * *
39110581 ACCTATTTCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGA
39110612 CTTACAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
Found at i:39112168 original size:11 final size:11
Alignment explanation
Indices: 39112154--39112191 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
39112144 ATTTTTTTTC
39112154 TTTTTTGGTTT
1 TTTTTTGGTTT
*
39112165 TTTTGT-GTTT
1 TTTTTTGGTTT
*
39112175 TTTTTGGGTTT
1 TTTTTTGGTTT
39112186 TTTTTT
1 TTTTTT
39112192 TGAATTGGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (11 bp):
TTTTTTGGTTT
Found at i:39117368 original size:23 final size:22
Alignment explanation
Indices: 39117328--39117371 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
39117318 AAATTATAAA
*
39117328 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
39117350 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
39117372 TGTGAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:39118101 original size:23 final size:22
Alignment explanation
Indices: 39118071--39118115 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
39118061 AAATTAAATC
39118071 TCTAAGATTACAAAATCATATCT
1 TCTAAGATT-CAAAATCATATCT
* *
39118094 TCTAAGATTCCATATCATATCT
1 TCTAAGATTCAAAATCATATCT
39118116 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTCAAAATCATATCT
Found at i:39118118 original size:19 final size:19
Alignment explanation
Indices: 39118094--39118149 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
39118084 AATCATATCT
39118094 TCTAAGATTCCATATCATA
1 TCTAAGATTCCATATCATA
*
39118113 TCTAAGATTGCATATATCATA
1 TCTAAGATT-C-CATATCATA
*
39118134 TCTAAGATTGCATATC
1 TCTAAGATTCCATATC
39118150 CTTGAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 17 0.53
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTCCATATCATA
Found at i:39118131 original size:21 final size:21
Alignment explanation
Indices: 39118105--39118148 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
39118095 CTAAGATTCC
39118105 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
39118126 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
39118147 AT
1 AT
39118149 CCTTGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:39118930 original size:88 final size:89
Alignment explanation
Indices: 39118828--39119113 Score: 251
Period size: 88 Copynumber: 3.2 Consensus size: 89
39118818 ATCTGTAATT
* * * *
39118828 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTAC
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
*
39118892 CTTGGGAAGATAAGATTCACCGTC
66 CTTGGGAAGATAAGAATCACCGTC
* * * * *** * * *
39118916 TTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT-GTAATTTTCAACCTAC-TCCACTGCT
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGT-GGCTTAAATCTACTTCC-CTACT
* * * * **
39118979 -GCTTAGGCAGATAAG-GTCTACAATC
64 ACCTTGGGAAGATAAGAATC-ACCGTC
* * *
39119004 TTCAACCTACTCCACTACTGCTCAGGGAGATAA-GTCTAGTGGCTTAAATCTGCTTCCCTACTAC
1 TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
**
39119068 CTTGGGAAGATAAGAATCGTCGTC
66 CTTGGGAAGATAAGAATCACCGTC
* *
39119092 TTCTATCTGCTCTACTACTGCT
1 TTCAATCTGCTCCACTACTGCT
39119114 TAGGAATATA
Statistics
Matches: 145, Mismatches: 45, Indels: 16
0.70 0.22 0.08
Matches are distributed among these distances:
87 16 0.11
88 115 0.79
89 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (89 bp):
TTCAATCTGCTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTAC
CTTGGGAAGATAAGAATCACCGTC
Found at i:39119010 original size:176 final size:176
Alignment explanation
Indices: 39118793--39119213 Score: 557
Period size: 176 Copynumber: 2.4 Consensus size: 176
39118783 CTTCAATTTG
* ** ** *
39118793 CTCCACTGCAGCTTAGAGAGATAAAATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGA
1 CTCCACTGCTGCTTAG-GAGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
*
39118858 TAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGAT
65 TAAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGAT
39118922 CTGCTCCACTACTGCTTAAGG-AGATAAGATCTGTAATTTTCAACCTA
130 CTGCTCCACTACTGCTT-AGGAAGATAAGATCTGTAATTTTCAACCTA
*
39118969 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
1 CTCCACTGCTGCTTAGG-AGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
* ** *
39119034 TAA-GTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGTCTTCTAT
65 TAAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGAT
* *
39119098 CTGCTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
130 CTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
* * * * * *
39119145 CTCCACTGCTGCTCAGGGAGA-GAGGAT-TCACAATCTTTAACATATTACACTGCTGAC-CAGGG
1 CTCCACTGCTGCTTA-GGAGATAAGG-TCT-ACAATCTTCAACCTACTCCACTGCTG-CTCAGGG
39119207 AGATAAG
62 AGATAAG
39119214 ATTCATAATC
Statistics
Matches: 216, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
175 10 0.05
176 203 0.94
177 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (176 bp):
CTCCACTGCTGCTTAGGAGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT
AAGGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGATC
TGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
Found at i:39119035 original size:132 final size:130
Alignment explanation
Indices: 39118762--39119037 Score: 315
Period size: 132 Copynumber: 2.1 Consensus size: 130
39118752 CACTACAACT
* * *
39118762 TCAGGGAGATAAGATTACTGGCTTCAATTTGCTCCACTGCAGCTTAGAGAGATAAAATCTGTAAT
1 TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGAGAGATAAAATCTGTAAT
* *** * *
39118827 TTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTTAGTGGCTTAAATCTCCTTCCCTACTAC
66 TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
* * * * *
39118892 -CTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTA-AGGAGATAAGATCTG
1 TC-AGGG-AGATAAGATT-ACCGGCTTCAATCTGCTCCACTACAGCTTAGA-GAGATAAAATCTG
* * *
39118955 TAATTTTCAACCTACTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTAC-TCCAC
62 TAATTTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGT-TACAAGCTTAAACCTACTTCC-C
*
39119019 TACTGC
125 TACTAC
39119025 TCAGGGAGATAAG
1 TCAGGGAGATAAG
39119038 TCTAGTGGCT
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
129 1 0.01
130 3 0.03
131 11 0.09
132 85 0.71
133 19 0.16
134 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (130 bp):
TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGAGAGATAAAATCTGTAAT
TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
Found at i:39119157 original size:44 final size:44
Alignment explanation
Indices: 39118925--39119157 Score: 170
Period size: 44 Copynumber: 5.3 Consensus size: 44
39118915 CTTCGATCTG
*
39118925 CTCCACTACTGCTTAAGG-AGATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTT-AGGAAGATAAGATCTGTAATCTTCAACCTA
* * * **
39118969 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
* * ** * * *
39119013 CTCCACTACTGCTCAGGGAGATAAG-TCTAGT-GGCTTAAATCTG
1 CTCCACTACTGCTTAGGAAGATAAGATCT-GTAATCTTCAACCTA
* * ** * * *
39119056 CTTCC-CTACTACCTTGGGAAGATAAGAATC-GTCGTCTTCTATCTG
1 C-TCCACTACT-GCTTAGGAAGATAAG-ATCTGTAATCTTCAACCTA
* * *
39119101 CTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
*
39119145 CTCCACTGCTGCT
1 CTCCACTACTGCT
39119158 CAGGGAGAGA
Statistics
Matches: 146, Mismatches: 34, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
43 22 0.15
44 107 0.73
45 15 0.10
46 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
Found at i:39119198 original size:44 final size:44
Alignment explanation
Indices: 39119148--39119263 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
39119138 CAACCTACTC
* *
39119148 CACTGCTG-CTCAGGGAGAGAGGATTCACAATCTTTAACATATTA
1 CACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACATATTA
* * * *
39119192 CACTGCTGACCAGGGAGATAAGATTCATAATCTTCAACCTATTC
1 CACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACATATTA
* *
39119236 CACTACTGACAAGGGAGATAGGATTCAC
1 CACTGCTGACCAGGGAGATAGGATTCAC
39119264 CTATTTCATT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
44 60 0.98
45 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (44 bp):
CACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACATATTA
Found at i:39119365 original size:254 final size:254
Alignment explanation
Indices: 39119026--39119543 Score: 806
Period size: 254 Copynumber: 2.0 Consensus size: 254
39119016 CACTACTGCT
* *
39119026 CAGGGAGATAAGTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
1 CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
* * * *
39119091 CTTCTATCTGCTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTACTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCTG
* * *
39119156 CTCAGGGAGAGAGGATTCACAATCTTTAACATATTAC-ACTGCTGACCAGGGAGATAAGATTCAT
131 CTCAGGGAGAGAGAATTCACAATCTTCAACATATT-CTACTGCTGACCAGGGAGATAAGATTCAC
* * *
39119220 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTTCATTGTTGAC
195 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
*
39119280 CAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGAATCG-CTG
1 CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTC-G
* *
39119344 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCACCGCT
65 TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCT
* * * *
39119409 GCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCAC
130 GCTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGACCAGGGAGATAAGATTCAC
* * *
39119474 AATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGATGAC
195 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
39119534 CAGGGAGATA
1 CAGGGAGATA
39119544 GGATTCACCT
Statistics
Matches: 240, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
253 2 0.01
254 238 0.99
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (254 bp):
CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGT
CTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTACTCCACCGCTG
CTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGACCAGGGAGATAAGATTCACA
ATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGATGAC
Found at i:39119460 original size:44 final size:43
Alignment explanation
Indices: 39119390--39122870 Score: 504
Period size: 44 Copynumber: 81.7 Consensus size: 43
39119380 ATCTGTAATT
*
39119390 TTCAACCTACTT-CACCGCTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
39119434 TTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
39119478 TTCGACCTATTCCACTGCTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
39119513 TTC-ACCTATTCCACTGATGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
39119547 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39119590 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39119634 TTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
39119678 TTCAACCTGTTCCACTACTAACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * **
39119721 TTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * ** *
39119766 TTCGATCTGCTCCACTACT-ACTTTA-GGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC--CAGGGAGATAGA-AT-TACAATC
* *
39119810 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
39119854 TTCAACCTATTCCATTGCTGACCAAGGG-GATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACC-AGGGAGATA-GAATTACAATC
*
39119898 TTCAACCTATTCCACTGCTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
39119933 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39119976 TTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39120020 TTCAACCTATTCCACTCCTGACTAGGGAGATTGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGA-TAGAATTACAATC
* * ** ****
39120064 TTCAACCTGTTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * ** **
39120107 TT-ACATCTGCTTCC-CTACT-ACCTTGGAAAGATAAGAATCGCCGTC
1 TTCA-ACCT-ATTCCACTGCTGACC-AGG-GAGAT-AGAATTACAATC
* ** ** * * * * * ** *
39120152 TTCGATTTGGTCTACTACTG-CTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
39120196 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
39120240 TTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * *
39120284 TTAAACCTATTCCACTACTGGCAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * *
39120325 -T--A--T-TT-CACTACTGACTAGGCATATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
39120362 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * **
39120405 TTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-ATATTCGCCGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** * *
39120450 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGCAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * * *
39120494 TTCACCCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
39120538 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
39120582 TTCAACCTATTCCACTACTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
*
39120617 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
39120660 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * ** *
39120704 TTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
39120748 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
39120791 TTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATA-AGATTCGCTGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * **
39120836 TTCGATCTGCTCCACTGCTG-CTTAGGGAGATA-AGATCTGTAAT-
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
*
39120879 TGTCAACCTACTT-CACTGCTG-CTCAGGGAGAGA-AGATTCACAATC
1 T-TCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGA-ATT-ACAATC
* * * * * *
39120924 TTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * **
39120968 TTCAACCTATTCCACTACT-AACAGGG-G--AG-A-GAGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * ** ****
39121003 TTC-ACCTATTTCACTGTTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * * *
39121045 TTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATA-AGATTCGCTATC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * ** *
39121090 TTCGATCTGCTGCACTGCTG-CTTAGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* *
39121134 TTCAACCTACTT-CATTGTTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
39121178 TTCAGCCTATTCTACTGCTGACCAGGGAGATATG-ATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATT-ACAATC
* * *
39121222 TTCAACCTATTCGACTGCTGACTAGGGAGATAGGATT-C-A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
39121261 -T----CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** * *
39121300 TTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* *
39121344 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * ** ****
39121388 TTCAACCTGTTCCACTTCTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** ** * * * ** **
39121431 TTAAATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCGCCGTC
1 TTCAACCTATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
* ** ** * * * * * * ** *
39121476 TTCGATTTGGTCTACTACT-TCTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* * *
39121520 TTCAACCTACTCCACTGCTG-CTCAGGGACATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
39121564 CTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* ** *
39121608 TTCAACCTATTTCACTGCTGAAAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
39121649 -T--A--T-TT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
39121686 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * * **
39121729 TTACATCTTCTTCC-CTACT-ACCTTCGGAAGATATG-ATTCGCCGTC
1 TT-CAACCTATTCCACTGCTGACC--AGGGAGATA-GAATT-ACAATC
* ** * * ** ** *
39121774 TTCAATCTGCTCAACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
39121818 TTCAACCT-TCTCCACTGTTG-CTAAGAGAGATAGGATTCACAATC
1 TTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
39121862 TTCAACCTATTCCACTGCTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
39121897 TTC-ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
39121940 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39121984 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
39122028 TTCAACCTGTTGCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * ** *
39122071 TTAAATCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATCACCGTA
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
** ** ** * * * * ** * ** *
39122116 TTTGATTTGGTCTACTACAG-CTTAAAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
** * *
39122160 TTCAACCTACACCACTGCTG-CTTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * *
39122204 TGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
39122248 TTCAACCTATTCCACTACTGACAAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
39122283 TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTA-TTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
39122326 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * **
39122369 TT-AAGTCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCACCGTC
1 TTCAA--CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** **
39122414 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAAT-
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* ** ****
39122457 TT----CTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * **
39122496 TT-AAGTCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCACCGTC
1 TTCAA--CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** ** *
39122541 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
39122585 TTCAACCTACTGCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
39122629 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* **
39122673 TTCAACCTATTCCACTGTTGACCAGGGAG--AG----AGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* **
39122708 TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
39122751 TTCAACCTATTCCACTGTTGACCAGGGAGATACGACTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
39122795 TTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
39122839 TTCAACCTATTCCACTACTGACCAGGGAGATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA
39122871 AGGCTAGTGG
Statistics
Matches: 2561, Mismatches: 627, Indels: 498
0.69 0.17 0.14
Matches are distributed among these distances:
34 257 0.10
35 46 0.02
36 5 0.00
37 13 0.01
38 7 0.00
39 25 0.01
40 10 0.00
41 10 0.00
42 48 0.02
43 205 0.08
44 1741 0.68
45 188 0.07
46 6 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
Found at i:39119525 original size:34 final size:34
Alignment explanation
Indices: 39119482--39119580 Score: 180
Period size: 34 Copynumber: 2.9 Consensus size: 34
39119472 ACAATCTTCG
39119482 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
39119516 ACCTATTCCACTGATGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
39119550 ACCTATTCCACTGCTAACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
39119581 CTTACAATCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 62 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:39119702 original size:88 final size:87
Alignment explanation
Indices: 39119550--39124451 Score: 500
Period size: 88 Copynumber: 57.1 Consensus size: 87
39119540 GATAGGATTC
* * *
39119550 ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTAGCTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAG
* *
39119615 GGAGATAGGACTCACAACCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * *
39119638 ACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAG
1 ACCTATTCCACTGCTAGCTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAG
**** *
39119703 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
** * * * * * * ** * * ** *
39119725 ATTTGCTTCC-CTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACT-ACT
1 ACCT-ATTCCACTGCTAGCTAGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGAC-
* * *
39119788 TTA-GGAGATAAGATCTGT--AATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* *
39119814 ACCTACTCCACTGCT-GCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCA
1 ACCTATTCCACTGCTAGCT-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACC-
*
39119878 AGGG-GATAGGATTTACAATCTTCA
63 AGGGAGATAGGACTTACAATCTTCA
* *
39119902 ACCTATTCCACTGCT-GACCAGGGAGATAGG------A--TTC-ACCTATTCCACTGCTAACCAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
39119957 GGAGATAGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * *
39119980 ACCTATTCCACTG-TTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTA
1 ACCTATTCCACTGCTAGCT-AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
*
39120044 GGGAGATTGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * * **** * * *
39120068 ACCTGTTCCACTACT-GACCAGGGAGATAAGG-CTAGTGGCTT-ACATCTGCTTCC-CTACT-AC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCA-ACCT-ATTCCACTGCTGAC
* * * * ** ** *
39120128 CTTGGAAAGATAAGAATCGCCGTCTTCG
62 C-AGG-GAGATAGGACTTACAATCTTCA
** ** * * * * ** * *
39120156 ATTTGGTCTACTACT-GCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTC
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGAC-C
39120219 AGGGAGATAGGA-TTCACAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * * * * * * *
39120244 ACCTCTTACACTACT-GACCAGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTGGCAA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
39120308 GGGAGATAGGA-TTGAC---C-T--
64 GGGAGATAGGACTT-ACAATCTTCA
* * * * *
39120326 A--T-TT-CACTACT-GACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
**** *
39120386 GGGAGATAAGG-C-TAGTGGCTTAA
64 GGGAGAT-AGGACTTACAATCTTCA
** * * * * ** * ** * * ** *
39120409 ATTTGCTTCC-CTACTACCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACTG-CT
1 ACCT-ATTCCACTGCTAGCTAGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGAC-
** * * *
39120472 TTGGGAGATAAGA-TCTGCAATTTTCA
62 CAGGGAGATAGGACT-TACAATCTTCA
* * * * * *
39120498 CCCTACTCCATTGCT-GCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCA
1 ACCTATTCCACTGCTAGCT-AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
39120562 GGGAGATAGGA-TTCACAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * *
39120586 ACCTATTCCACTACT-GACCAAGGAGATAGG------A--TTC-ACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
39120641 GGAGATAGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * * **
39120664 ACCTATTCCACTG-TTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTTCCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
39120728 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * **** * * * *
39120752 ACCTATTCCACTACT-GACCAGGGAGATAAGG-CTAGTGGCTTAAATCTCCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTGCTGACC
* * * ** *
39120813 TCGGGAAGATAAGA-TTCGCTGTCTTCG
63 -AGGG-AGATAGGACTT-ACAATCTTCA
* ** * **
39120840 ATCTGCTCCACTGCT-GCTTAGGGAGATAAGATCTGTAAT-TGTCAACCTACTT-CACTGCTG-C
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCT-TCAACCTA-TTCCACTGCTGAC
* * *
39120901 TCAGGGAGAGAAGA-TTCACAATCTTTA
62 -CAGGGAGATAGGACTT-ACAATCTTCA
* * * * * * *
39120928 ACCTATTACACTACT-GACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACT-AACA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
39120991 GGGGAGAGAGG-------A--TTC-
64 -GGGAGATAGGACTTACAATCTTCA
* * * * **** * ** * * *
39121006 ACCTATTTCACTG-TTGACCAGGGAGATAAGG-CTAGTGGCTTAAATTTGCTTCC-TTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTGCTGACC
* * * * *
39121067 TTGGGAAGATAAGA-TTCGCTATCTTCG
63 -AGGG-AGATAGGACTT-ACAATCTTCA
* ** * * ** * * *
39121094 ATCTGCTGCACTGCT-GCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTGTTG-CT
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCTTCAACCTA-TTCCACTGCTGAC-
*
39121156 CAGGGAGATA-GAATTCACAATCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * * * * *
39121182 GCCTATTCTACTGCT-GACCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
39121246 GGGAGATAGGA-TT-C-A---T--
64 GGGAGATAGGACTTACAATCTTCA
* * * **
39121262 --CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAG
1 ACCTATTCCACTGCTAGCTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAG
*
39121325 GGAGATAGGACTCACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * *
39121348 ACCTATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
**** *
39121412 GGGAGATAAGG-C-TAGTGGCTTAA
64 GGGAGAT-AGGACTTACAATCTTCA
** ** * * * * * ** ** * ** ** * * * *
39121435 ATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACT-TCTT
1 ACCTATTCCACTGCTAGCTAGGG-AGAT-AGGATTACAATCTTCAACCTATTCCACTGCTGAC-C
* * * ** *
39121499 AGAGAGATAAGATTTGTAATTTTCA
63 AGGGAGATAGGACTTACAATCTTCA
* * * * *
39121524 ACCTACTCCACTGCT-GCTCAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCA
1 ACCTATTCCACTGCTAGCT-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
39121588 GGGAGATAGGA-TTCACAATATTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* ** *
39121612 ACCTATTTCACTGCT-GAAAAGGGAGATAGGATTGAC---C-T--A--T-TT-CACTGCTGACTA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
39121666 GGGAGATATGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * **** * * * *
39121690 ACCTATTCCACTACT-GACCAGGGAGATAAGG-CTAGTGGCTTACATCTTCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTT-CAACCTATTCCACTGCTGACC
* * * * **
39121751 TTCGGAAGATATGA-TTCGCCGTCTTCA
63 --AGGGAGATAGGACTT-ACAATCTTCA
* ** * * * * ** * *
39121778 ATCTGCTCAACTACT-GCTTTGGGAGATAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-CT
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCTTCAACCTAT-TCCACTGCTGAC-
* *
39121840 AAGAGAGATAGGA-TTCACAATCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * *
39121866 ACCTATTCCACTGCT-GACCAAGGAGATAGG------A--TTC-ACCTATTCCACTCCTGACCAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
*
39121921 GGAGATAGGACTTAAAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * * *
39121944 ACCTATTCCACTG-TTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
39122008 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * * * **** * * * *
39122032 ACCTGTTGCACTACT-GACCAGGGAGATAAGG-CTAGTGGCTTAAATCTGCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTGCTGACC
* * * * ** * **
39122093 TTGGGAAGATAAGAATCACCGTATTTG
63 -AGGG-AGATAGGACTTACAATCTTCA
** ** * * ** * ** * ** *
39122120 ATTTGGTCTACTAC-AGCTTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTG-CTT
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGAC-C
*
39122183 AGGGAGATAGGA-TTCACAATCTGCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * * *
39122208 ACCTCTTACACTGCT-GACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
39122272 GGGAGATAGG-------A--TGC-
64 GGGAGATAGGACTTACAATCTTCA
* *
39122286 ACCTAGTT-CACTGCT-GACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACC
1 ACCTA-TTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACC
****
39122349 AGGGAGATAAGG-C-TAGTGGCTT-A
63 AGGGAGAT-AGGACTTACAATCTTCA
* * * * * * ** * * ** *
39122372 AGTCTTCTTCC-CTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTG-C
1 A--CCTATTCCACTGCTAGCTAGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGAC
** *
39122435 TTTGGGAGATAAGATCTGT--AAT-TT--
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * **** * * *
39122459 --CTATTCCACTACT-GACCAGGGAGATAAGG-CTAGTGGCTT-AAGTCTTCTTCC-CTACT-AC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAA--CCTATTCCACTGCTGAC
* * ** *
39122517 CTTGGGAAGATAAGA-TTCACCGTCTTCG
62 C-AGGG-AGATAGGACTT-ACAATCTTCA
* ** * * * ** * * *
39122545 ATCTGCTCCACTACT-GCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTGCACTGCTG-CTC
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTGCTGAC-C
39122608 AGGGAGATAGGA-TTCACAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * *
39122633 ACCTATTCCATTGCT-GACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
*
39122697 GGGAGAGAGG-------A--TTC-
64 GGGAGATAGGACTTACAATCTTCA
* *
39122711 ACCTATTCCACTGCT-GACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
* * *
39122775 GGGAGATACGACTCATAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * *
39122799 ACCTATTCCACTGCT-GACCAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
**** *
39122863 GGGAGATAAGG-C-TAGTGGCTTAA
64 GGGAGAT-AGGACTTACAATCTTCA
* * * * * * * ** * * ** *
39122886 ATCTGCTTCC-CTACTACCTTGGGAAGATAAGAATTGCCTTCTTCGATCTGCTCTA-TGACTG-C
1 ACCT-ATTCCACTGCTAGCTAGGG-AGAT-AGGATTACAATCTTCAACCTATTCCACTG-CTGAC
** * *
39122948 TTTGGGAGATAAGATCTGT--AATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * * *
39122975 ACTTACTCCACTACT-GCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCA
1 ACCTATTCCACTGCTAGCT-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
39123039 GAGAGATAGGA-TTCACAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * * * * ** *
39123063 ACCTATTACACTACT-GACAAAGGAGAT---A--A-GA--TTC-ACCTATTTTACTGCTGACTAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
*
39123118 GGAGATATGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * * **** * ** * *
39123141 ACCTATTCAACTACT-GACCAGAGAGATAAGG-CTAGTGGCTTAAATTTTCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAA-CCTATTCCACTGCTGACC
* * * * **
39123202 TTGGGAAGATAAGA-TTCGCCATCTTTT
63 -AGGG-AGATAGGACTT-ACAATCTTCA
* * * * * * * * * * *
39123229 ATCTACTCCACTACT-GCTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTG-CTC
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGAC-C
*
39123292 AGGGAGATAGGA-TTCAGAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * *
39123317 ACCTATTCCACTGCT-GACCAAGGAGATAGG------A--TTC-ACCTATCCCACTGCTGACCAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
* *
39123372 GGAGATTGGACTTACAATCTTTA
65 GGAGATAGGACTTACAATCTTCA
* * * * **** * * *
39123395 ACCTATTCCTCTACT-GACCAGGGAGATAAGG-CTAGTGGCTTAAATCTACTTCC-CTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAACCTA-TTCCACTGCTGACC
* * * ** ** *
39123456 TTGGGAAGATAAGAATCGCCGTCTTCG
63 -AGGG-AGATAGGACTTACAATCTTCA
* ** * * * * ** * * *
39123483 ATCTGCTCTACT-ATTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACTA
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTGCTGACCA
39123547 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * * * * **** * * * *
39123571 ACCTATTCCACTACTAACCAGGAAGACAAGGCTT-GTGGCTTAAATCTGCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTAGCTAGGGAGA-TAGGATTACAATCTTCAACCT-ATTCCACTGCTGACC-
* * * * ** *
39123633 AGGAAAGATAAGATTTGCCGTCTTCG
63 AGG-GAGATAGGACTTACAATCTTCA
* * * * * *** ** * *
39123659 ATCTACTCTACT-ATTGCTTAGGGAGATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-ACTC
1 ACCTATTCCACTGCTAGC-TAGGGAGAT-AGGATTACAATCTTCAACCTATTCCACTGCTGAC-C
*
39123721 AGGGAGATAGGA-TTCACAATTTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * * * *
39123746 ACCTATTTCACT-ATTGACGAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGGCCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
* * *
39123810 TGGAGATAAGACTTATAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * **** * * * *
39123834 ACCTATTCCACTACT-GACTAGTGAGATAAGG-CTAGTGGCTTAAATCTACTT-CTCTACT-ACC
1 ACCTATTCCACTGCTAG-CTAGGGAGAT-AGGATTACAATCTTCAACCTA-TTCCACTGCTGACC
* * * ** ** *
39123895 TTGGGAAGATAAGAATCGCCGTCTTCG
63 -AGGG-AGATAGGACTTACAATCTTCA
* ** * * * * ** * *
39123922 ATCTGCTCTACTACT-GCTTAGGGAGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-CT
1 ACCTATTCCACTGCTAGC-TAGGGAGATAGGAT-TACAATCTTCAACCTAT-TCCACTGCTGAC-
*
39123984 AAGGGAGATAGGA-TTCACAATCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * *
39124010 ACCTATTCCACTGCT-GACTAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTACCGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
**** *
39124074 GGGAGATAAGG-C-TAGTGGCTTAA
64 GGGAGAT-AGGACTTACAATCTTCA
* * * * * * ** ** ** ** *
39124097 ATCTGCTTCC-CTACTACCTCGGGAAGATAAGATTCACCGTCTTTGATTTGCTGCACTGCTG-CT
1 ACCT-ATTCCACTGCTAGCTAGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGAC-
* * *
39124160 TAGGGAGATAAGATCTGT--AATTTTCA
62 CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * *
39124186 ACCTACTT-CATTACT-GCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACC
1 ACCTA-TTCCACTGCTAGCT-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACC
39124249 AGGGAGATAGGA-TTCACAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * *
39124274 ACCTATTCCACTGCT-GACCAGGGAGATAGGATT-C-A---T----CTATTCCACTACTAACCAG
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAG
39124329 GGAGATAGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * *
39124352 ACCTATTCCACTG-TTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCGCTGCTGACCA
1 ACCTATTCCACTGCTAG-CTAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCA
39124416 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
*
39124440 ACCTGTTCCACT
1 ACCTATTCCACT
39124452 ACTGACCAGG
Statistics
Matches: 3403, Mismatches: 1009, Indels: 804
0.65 0.19 0.15
Matches are distributed among these distances:
77 27 0.01
78 696 0.20
79 66 0.02
80 7 0.00
81 14 0.00
82 20 0.01
83 25 0.01
84 17 0.00
85 13 0.00
86 34 0.01
87 342 0.10
88 1852 0.54
89 276 0.08
90 10 0.00
91 4 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (87 bp):
ACCTATTCCACTGCTAGCTAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAGG
GAGATAGGACTTACAATCTTCA
Found at i:39119781 original size:420 final size:423
Alignment explanation
Indices: 39119136--39120079 Score: 1274
Period size: 420 Copynumber: 2.2 Consensus size: 423
39119126 ATCTGTAATT
* * * * * * * *
39119136 TTCAACCTACTCCACTGCT-GCTCAGGGAGAGAGGATTCACAATCTTTAACATATTACACTGCTG
1 TTCAACCTATTCCACTGCTAAC-CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTG
* * * * * *
39119200 ACCAGGGAGATAAGATTCATAATCTTCAACCTATTCCACTACTGAC-AAGGGAGATAGGA-TT-C
65 ACCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAA-GGAGATAGGACTTAC
* * ** *
39119262 -A-C--CTA--T-TT-CATTGTTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
129 AATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
* *
39119319 TACCTTGGGAAGATAAGAATCGCTGTCTTCGATCTGCTCCACTACTGC-TTAGGGAGATAAGATC
194 TACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTA-GGAGATAAGATC
* * *
39119383 TGTAATTTTCAACCTACTTCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTA
258 TGTAATTTTCAACCTACTCCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCA
*
39119448 CTGCTGACC-AGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGG
323 CTGCTGACCAAGGG-GATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
*
39119512 ATTCACCTATTCCACTGATGACCAGGGAGATAGG-A-
387 ATTCACCTATTCCACTGATAACCAGGGAGATAGGAAC
* **
39119547 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGA
1 TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
39119611 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
*
39119676 TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTA
131 TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
*
39119741 CCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
196 CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
* * *
39119806 AATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTG
261 AATTTTCAACCTACTCCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTG
*
39119871 CTGACCAAGGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
326 CTGACCAAGGGGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
39119936 ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
391 ACCTATTCCACTGATAACCAGGGAGATAGG------AA-C
* * *
39119976 TTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
1 TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
* * * * *
39120041 CTAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACT
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACT
39120080 ACTGACCAGG
Statistics
Matches: 464, Mismatches: 45, Indels: 29
0.86 0.08 0.05
Matches are distributed among these distances:
410 99 0.21
411 8 0.02
412 1 0.00
413 1 0.00
414 1 0.00
416 2 0.00
418 1 0.00
419 2 0.00
420 249 0.54
421 7 0.02
427 1 0.00
429 3 0.01
430 89 0.19
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (423 bp):
TTCAACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAA
TCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGT
AATTTTCAACCTACTCCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTG
CTGACCAAGGGGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
ACCTATTCCACTGATAACCAGGGAGATAGGAAC
Found at i:39119945 original size:34 final size:34
Alignment explanation
Indices: 39119902--39119966 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
39119892 ACAATCTTCA
*
39119902 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
39119936 ACCTATTCCACTGCTAACCAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGATAGGA
39119967 CTTACAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
Found at i:39119987 original size:78 final size:81
Alignment explanation
Indices: 39119853--39120095 Score: 296
Period size: 78 Copynumber: 3.0 Consensus size: 81
39119843 GATTCACAAT
* *
39119853 CTTCAACCTATTCCATTGCTGACCAAGGG-GATAGGATTTACAATCTTCAACCTATTCCACTGCT
1 CTTCAACCTATTCCACTGCTGACC-AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
39119917 GACCAGGGAGATAGG-A
65 GACCAGGGAGATAGGAA
* *
39119933 -TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
*
39119996 ATCAGGGAGATAGGACTCACAA
66 ACCAGGGAGATAGG------AA
* * * * *
39120018 TCTTCAACCTATTCCACTCCTGACTAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
39120083 GACCAGGGAGATA
65 GACCAGGGAGATA
39120096 AGGCTAGTGG
Statistics
Matches: 139, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
77 4 0.03
78 64 0.46
79 3 0.02
85 1 0.01
87 3 0.02
88 64 0.46
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (81 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
ACCAGGGAGATAGGAA
Found at i:39120004 original size:386 final size:384
Alignment explanation
Indices: 39119447--39120393 Score: 1421
Period size: 386 Copynumber: 2.5 Consensus size: 384
39119437 AGCCTATTCT
*
39119447 ACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAG
1 ACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGG-GATAG
*
39119511 G------A--TTC-ACCTATTCCACTGATGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
64 GATTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
39119567 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
129 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
* *
39119632 CCTTCAACCTATTCCACTGCTGGCTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACT
194 CCTTCAACCTATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACT
* * *
39119697 AACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGC
259 AACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGC
39119762 CGTCTTCGATCTGCTCCACTACTACTTTAG-GAGATAAGATCTGTAATTTTCAACCTACTCC
324 CGTCTTCGATCTGCTCCACTACTAC-TTAGAGAGATAAGATCTGTAATTTTCAACCTACTCC
*
39119823 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAAGGGGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACC-AGGGGATAGG
39119888 ATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
65 A-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
*
39119953 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAA
129 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
* * *
39120018 TCTTCAACCTATTCCACTCCTGACTAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACT
194 CCTTCAACCTATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACT
* *
39120083 GACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGC
259 AACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGC
* * * * *
39120148 CGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCC
324 CGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCC
* * * *
39120209 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGG-GGATAGG
* * * * * * * *
39120274 ATTCACAATCTTAAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCTATTTCACTACTGA
65 ATT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
* * * * **
39120339 CTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
129 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATA
39120394 AGGCTAGTGG
Statistics
Matches: 517, Mismatches: 39, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
375 1 0.00
376 56 0.11
377 4 0.01
383 1 0.00
385 12 0.02
386 443 0.86
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (384 bp):
ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGGATAGGA
TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAACC
AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACC
TTCAACCTATTCCACTCCTGACTAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAA
CCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCG
TCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCC
Found at i:39120031 original size:122 final size:122
Alignment explanation
Indices: 39119814--39120050 Score: 345
Period size: 122 Copynumber: 1.9 Consensus size: 122
39119804 GTAATTTTCA
* *
39119814 ACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAA
1 ACCTACTCCACTGCTACTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAA
* * *
39119879 GGGGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
66 GGGGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATAGGATTC
* * *
39119936 ACCTATTCCACTGCTAAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGATC
1 ACCTACTCCACTGCT-ACTCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACC
*
39119999 -AGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTAGGGAGAT
64 AAGGG-GATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGAT
39120051 TGGACTTACA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
121 4 0.04
122 96 0.93
123 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (122 bp):
ACCTACTCCACTGCTACTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAA
GGGGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATAGGATTC
Found at i:39120202 original size:298 final size:288
Alignment explanation
Indices: 39119893--39120691 Score: 911
Period size: 298 Copynumber: 2.7 Consensus size: 288
39119883 ATAGGATTTA
* * *
39119893 CAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACCTATTCCACTGCTAACCAG
1 CAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAG
** *
39119957 GGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGATCAGGGAGATAGGACTCACAATCT
65 GGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG-------A--T
* *
39120021 TCAACCTATTCCACTCCTGACTAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACTGAC
120 TC-ACCTATTCCACTACTGACTAGGGAGATTGGACTTACAATCTTCAACCTATTCCACTACTGAC
*
39120086 CAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGT
184 CAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGT
* * * *
39120151 CTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTG
249 CTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTG
* *
39120191 TAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACT
1 CAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC---C-T--A----TTCCACT
* * * * *
39120256 ACTGACCAGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTGGCAAGGGAGATAGGATT
56 GCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATT
* * * *
39120321 GACCTATTTCACTACTGACTAGGCATATAT-GACTTACAATCTTCAACCTATTCCACTACTGACC
121 CACCTATTCCACTACTGACTAGGGAGAT-TGGACTTACAATCTTCAACCTATTCCACTACTGACC
* * * *
39120385 AGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTC
185 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTC
* *
39120450 TTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTG
250 TTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTG
* * * * *
39120489 CAATTTTCACCCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATT
1 CAATTTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AG------GA--TTC-ACCTATTCCACT
*
39120554 GCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATT
56 GCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATT
* * * **
39120619 CACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCA
121 CACCTATTCCACTACTGACTAGGGAGATTGGACTTACAATCTTCAACCTATTCCACTACTGACCA
39120684 GGGAGATA
186 GGGAGATA
39120692 GGACTCACAA
Statistics
Matches: 425, Mismatches: 52, Indels: 48
0.81 0.10 0.09
Matches are distributed among these distances:
297 1 0.00
298 348 0.82
299 5 0.01
301 2 0.00
302 2 0.00
304 2 0.00
305 2 0.00
307 5 0.01
308 58 0.14
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (288 bp):
CAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGG
GAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCTATTCC
ACTACTGACTAGGGAGATTGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAG
GCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATCTGCT
CCACTACTGCTTAGAGAGATAAGATCTG
Found at i:39120484 original size:684 final size:684
Alignment explanation
Indices: 39119667--39121017 Score: 2229
Period size: 684 Copynumber: 2.0 Consensus size: 684
39119657 AAGGAGATAG
*
39119667 GACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
1 GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
39119732 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
66 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
* *
39119797 AAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT
131 AAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
* * *
39119862 ATTCCATTGCTGACCAAGGG-GATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGA
196 ATTCCATTGCTGACC-AGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGA
39119926 GATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCAC
260 GATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCAC
* * * *
39119991 TGTTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTAGGGAGATTGGAC
325 TGTTGACCAGGGAGATAGGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGAC
* * *
39120056 TTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCC
390 TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCC
* * * *
39120121 CTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAG
455 CTACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAG
* * * * *
39120186 ATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTT
520 ATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATT
** *
39120251 ACACTACTGACC-AGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTGGCAAGGGAGAT
585 ACACTACTGACCAAGG-AGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAGGGAGAG
*
39120315 AGGATTGACCTATTTCACTACTGACTAGGCATATAT
649 AGGATTCACCTATTTCACTACTGACTAGGCATATAT
*
39120351 GACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
1 GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
* * *
39120416 TCCCTACTACCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGAT
66 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
* * * *
39120481 AAGATCTGCAATTTTCACCCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCT
131 AAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
39120546 ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAG
196 ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAG
*
39120611 ATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
261 ATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
* * **
39120676 GTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACT
326 GTTGACCAGGGAGATAGGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGACT
39120741 TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCC
391 TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCC
* * * * *
39120806 TACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTGCTTAGGGAGATAAGA
456 TACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
* *
39120871 TCTGTAATTGTCAACCTACTTCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTA
521 TCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTA
* * *
39120936 CACTACTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAG
586 CACTACTGACCAAGGAGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAGGGAGAGAG
39121001 GATTCACCTATTTCACT
651 GATTCACCTATTTCACT
39121018 GTTGACCAGG
Statistics
Matches: 616, Mismatches: 49, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
683 4 0.01
684 609 0.99
685 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (684 bp):
GACTTACAATCTTCAACCTATTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCT
TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGAT
AAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAG
ATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
GTTGACCAGGGAGATAGGACTCACAATCTTCAACCAATTCCACTCCTGACCAGGGAGATAGGACT
TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCC
TACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
TCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTA
CACTACTGACCAAGGAGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAGGGAGAGAG
GATTCACCTATTTCACTACTGACTAGGCATATAT
Found at i:39120527 original size:386 final size:380
Alignment explanation
Indices: 39119447--39120917 Score: 1090
Period size: 386 Copynumber: 3.8 Consensus size: 380
39119437 AGCCTATTCT
*
39119447 ACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAG
1 ACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACCA-GGAGATAG
* * * *
39119511 G------A--TTC-ACCTATTCCACTGATGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
63 GATTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* ** **
39119567 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT-AGGACTCACA
128 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGT
** * * * * ** * * * * * * *
39119631 ACCTTCAACCTATTCCACTGCTGGCTAAGG-AGATAGGACTT-ACAATCTTCAACCTGTTCCACT
191 GGCTTAAATCTCTTCC-CTACTACCTAGGGAAGATAAGA-TTCGCAGTCTTCGATCTGCTCCACT
* * * *** ** ** * * *
39119694 ACTAAC-CAGGGAGATAAG-GCTAGTGGCTTAAATTTGCTTCC-CTACTAC-CTTGGGAAGATAA
254 ACT-GCTTAGGGAGATAAGATCT-GTAATTTTCACCTAC-TCCACTGCTGCTC-TGGG-AGATAA
* *
39119755 GATTCGCCGTCTTCGATCTGCTCCACTACTACTTTAGGAGATAAGATCTGTAATTTTCAACCTAC
314 GATTCGCCGTCTTCGATCTGCTCCACTACTGC-TTAGGAGATAAGATTTGTAATTTTCAACCTAC
39119820 TCC
378 TCC
* *
39119823 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAAGGGGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACC-AGGAGATAGG
* * *
39119888 ATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTCCACTGCTAA
64 A-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* ** * **
39119953 CCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGATCAGGGAGAT-AGGACTCACA
128 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGT
** * * * * ** * * * * *
39120017 ATCTTCAACCTATTCCACTCCTGA-CTAGGG-AGATTGGACTT-ACAATCTTCAACCTGTTCCAC
191 GGCTTAAATCTCTTCC-CTACT-ACCTAGGGAAGATAAGA-TTCGCAGTCTTCGATCTGCTCCAC
* * *** * * * * * *
39120079 TACTGAC-CAGGGAGATAAG-GCTAGTGGCTTACATCTGCTTCC-CTACTAC-CTTGGAAAGATA
253 TACTG-CTTAGGGAGATAAGATCT-GTAATTTTCACCTAC-TCCACTGCTGCTC-TGG-GAGATA
* * * *
39120140 AGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTA
313 AGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG-GAGATAAGATTTGTAATTTTCAACCTA
39120205 CTCC
377 CTCC
* *
39120209 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGG
1 ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT-TTCCACTGCTGACCAGG-AGATAGG
* * * * *
39120274 ATTCACAATCTTAAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCTATTTCACTACTGA
64 ATT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGA
* * *
39120339 CTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGG
128 CTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGG
* * * *
39120404 CTTAAATTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACT
193 CTTAAATCT-CTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCTGCTCCACTACT
* * * **
39120469 GCTTTGGGAGATAAGATCTGCAATTTTCACCCTACTCCATTGCTGCTCTGGGAGATAAGATTTAC
257 GCTTAGGGAGATAAGATCTGTAATTTTCA-CCTACTCCACTGCTGCTCTGGGAGATAAGATTCGC
** * * ** * * * * *** * *
39120534 AATCTTCAACCTATTCCATTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCC
321 CGTCTTCGATCTGCTCCACTACTG-CTTA-GGAGATAAGATTTGTAATTTTCAACCTACTCC
* *
39120595 ACTACTGAC-CAAGGAGATAGGATTCAC---C-T--A---TTCCACTGCTGACCAGGGAGATAGG
1 ACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTTTCCACTGCTGACCA-GGAGATAGG
* * * *
39120650 ACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATT
64 A-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCAC-CTATTT---C-A--
*
39120715 CCACTG-CTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
121 CTACTGAC--T--AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
* *
39120779 AAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCT
182 AAGGCTAGTGGCTTAAATCT-CTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCT
* * * *
39120844 GCTCCACTGCTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTTCACTGCTGCTCAGGGAG
246 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-ACCTACTCCACTGCTGCTCTGGGAG
*
39120909 AGAAGATTC
310 ATAAGATTC
39120918 ACAATCTTTA
Statistics
Matches: 926, Mismatches: 124, Indels: 80
0.82 0.11 0.07
Matches are distributed among these distances:
375 1 0.00
376 118 0.13
377 9 0.01
380 2 0.00
381 1 0.00
382 2 0.00
383 7 0.01
384 2 0.00
385 31 0.03
386 733 0.79
387 19 0.02
388 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (380 bp):
ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTTTCCACTGCTGACCAGGAGATAGGAT
TACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTATTTCACTACTGACTA
GGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTT
AAATCTCTTCCCTACTACCTAGGGAAGATAAGATTCGCAGTCTTCGATCTGCTCCACTACTGCTT
AGGGAGATAAGATCTGTAATTTTCACCTACTCCACTGCTGCTCTGGGAGATAAGATTCGCCGTCT
TCGATCTGCTCCACTACTGCTTAGGAGATAAGATTTGTAATTTTCAACCTACTCC
Found at i:39120629 original size:34 final size:34
Alignment explanation
Indices: 39120586--39120650 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
39120576 ACAATCTTCA
39120586 ACCTATTCCACTACTGACCAAGGAGATAGGATTC
1 ACCTATTCCACTACTGACCAAGGAGATAGGATTC
* *
39120620 ACCTATTCCACTGCTGACCAGGGAGATAGGA
1 ACCTATTCCACTACTGACCAAGGAGATAGGA
39120651 CTTACAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTACTGACCAAGGAGATAGGATTC
Found at i:39120671 original size:78 final size:81
Alignment explanation
Indices: 39120542--39120779 Score: 313
Period size: 78 Copynumber: 2.9 Consensus size: 81
39120532 ACAATCTTCA
*
39120542 ACCTATTCCATTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACTGACCA
*
39120606 AGGAGATAGGA-T-TC-
65 GGGAGATAGGACTATCT
**
39120620 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
39120685 GGAGATAGGACTCACAATCTTT
66 GGAGATAGGACT----ATC--T
* **
39120707 AACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCA
39120772 GGGAGATA
65 GGGAGATA
39120780 AGGCTAGTGG
Statistics
Matches: 140, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
78 68 0.49
79 3 0.02
84 2 0.01
88 67 0.48
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (81 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAGGACTATCT
Found at i:39120733 original size:122 final size:122
Alignment explanation
Indices: 39120518--39122018 Score: 441
Period size: 122 Copynumber: 11.8 Consensus size: 122
39120508 TTGCTGCTCT
* * *
39120518 GGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
*
39120583 TCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
66 TCAACCAATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
* *
39120640 GGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * ** * *
39120705 TTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGAC
66 TCAACCAATTCCACTACTGACCAAGGAGATAGG-------A--TTC-ACCTATTCCACTGCTGAC
39120770 CA
121 CA
* **** * * * * * * * * **
39120772 GGGAGATAAGGC-TAGTGGCTTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCTG
1 GGGAGATAAGACTTACAATCTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCACAA
* * *** * * *
39120834 TCTTCGATCTGCTCCACTGCTG-CTTAGGGAGATAAGATCTGTAATTGTCAACCTACTT-CACTG
63 TCTTCAACCAATTCCACTACTGAC-CAAGGAGAT-AG----G--A-T-TC-ACCTA-TTCCACTG
39120897 CTG-CTCA
116 CTGAC-CA
* * * * * * *
39120904 GGGAGAGAAGA-TTCACAATCTTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATC
1 GGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * *
39120968 TTCAACCTATTCCACTACT-AACAGGGGAGAGAGGATTCACCTATTTCACTGTTGACCA
65 TTCAACCAATTCCACTACTGACCA-AGGAGATAGGATTCACCTATTCCACTGCTGACCA
* **** * ** * * * * * * * *
39121026 GGGAGATAAGGC-TAGTGGCTTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATAAGATTCGCTA
1 GGGAGATAAGACTTACAATCTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCACAA
* * *** * * * * *
39121088 TCTTCGATCTGCTGCACTGCTG-CTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTG
63 TCTTCAACCAATTCCACTACTGAC-CAAGGAGAT-AG----G--A--TTC-ACCTA-TTCCACTG
*
39121151 TTG-CTCA
116 CTGAC-CA
* * * * *
39121158 GGGAGAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATC
1 GGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * * *
39121222 TTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCTATTCCACTGCTAACCA
65 TTCAACCAATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
* * **
39121280 GGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* ** * * *
39121345 TCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGAC
66 TCAACCAATTCCACTACTGACCAAGGAGATAGG-------A--TTC-ACCTATTCCACTGCTGAC
39121410 CA
121 CA
* **** * ** ** * * * * * * **
39121412 GGGAGATAAGGC-TAGTGGCTTAAATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCGCCGT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACC-AGGG-AGATAGGACTCACAAT
* ***** * * ** *
39121475 CTTCGATTTGGTCTACTACT-TCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCT
64 CTTCAACCAATTCCACTACTGACCAAG-GAGAT-AG----G--A--TTC-ACCTATTCCACTGCT
39121539 G-CTCA
118 GAC-CA
* * * * * * *
39121544 GGGACATAGGA-TTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATA
1 GGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * * *
39121608 TTCAACCTATTTCACTGCTGA-AAAGGGAGATAGGATTGACCTATTTCACTGCTGACTA
65 TTCAACCAATTCCACTACTGACCAA-GGAGATAGGATTCACCTATTCCACTGCTGACCA
* * ****
39121666 GGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CT-AGTGGC
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTCACAATC
* *** ** * * * * *
39121729 TTACATCTTCTTCC-CTACT-ACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTAC
65 TT-CAACCAATTCCACTACTGACC-AAGG-AGATAGGATTCACC-TATTCCA-CTGCT----GAC
*
39121792 TGCTTT
121 --C--A
* * * * *
39121798 GGGAGATAAGATCTGT--AATTTTCAACCT-TCTCCACTGTTG-CTAAGAGAGATAGGATTCACA
1 GGGAGATAAGA-CT-TACAATCTTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGGACTCACA
* * *
39121859 ATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCA
62 ATCTTCAACCAATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
* * *
39121920 GGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * * *
39121985 TTAACCAATTCCACTGCTTACCAGGGAGATAGGA
66 TCAACCAATTCCACTACTGACCAAGGAGATAGGA
39122019 CTTACAATCT
Statistics
Matches: 997, Mismatches: 273, Indels: 218
0.67 0.18 0.15
Matches are distributed among these distances:
120 5 0.01
121 28 0.03
122 395 0.40
123 28 0.03
124 7 0.01
125 3 0.00
126 2 0.00
127 4 0.00
128 2 0.00
129 3 0.00
130 10 0.01
131 69 0.07
132 362 0.36
133 64 0.06
134 13 0.01
137 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (122 bp):
GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
TCAACCAATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
Found at i:39120764 original size:298 final size:298
Alignment explanation
Indices: 39120024--39120767 Score: 762
Period size: 298 Copynumber: 2.5 Consensus size: 298
39120014 ACAATCTTCA
* * * * *
39120024 ACCTATTCCACTCCTGACTAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAG
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
*** * *** * * * * **
39120089 GGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
* ** ** * * *
39120154 CGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTC
131 CAACCTACTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTC
* *
39120219 AGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATC
196 AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
* *
39120284 TTAAACCTATTCCACTACTGGCAAGGGAGATAGGATTG
261 TTAAACCTATTCCACTACTGCCAAGGGAGATAGGATTC
* * * *
39120322 ACCTATTTCACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
*** **** * * * **
39120387 GGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTCTT
66 GGAGATAAGGCTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
* * * * * * *
39120452 CGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGCAATTTTCACCCTACTCCATTGCTGCTC
131 CAACCTACTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTC
* * * * * *
39120517 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
196 AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
*
39120582 TTCAACCTATTCCACTACTGACCAA-GGAGATAGGATTC
261 TTAAACCTATTCCACTACTG-CCAAGGGAGATAGGATTC
* * **
39120620 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* * * * *
39120685 GGAGAT-AGGACTCACAATCTTTAA-CCAATTCCACTGCTTTCC-AGGG-AGATAGGACTT-ACA
66 GGAGATAAGG-CT-ACAAGCTTAAATCCAATTCC-CTAC-TACCTAGGGAAGATAAGA-TTCACA
*
39120745 ATCTTCAACCTATTCCACTACTG
126 ATCTTCAACCTACTCCACTACTG
39120768 ACCAGGGAGA
Statistics
Matches: 379, Mismatches: 61, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
297 3 0.01
298 356 0.94
299 17 0.04
300 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (298 bp):
ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTACAAGCTTAAATCCAATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
CAACCTACTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTC
AGGGAGATAAGATTCACAATCTTCAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
TTAAACCTATTCCACTACTGCCAAGGGAGATAGGATTC
Found at i:39120779 original size:254 final size:255
Alignment explanation
Indices: 39119412--39122061 Score: 741
Period size: 254 Copynumber: 10.4 Consensus size: 255
39119402 CACCGCTGCT
* * * * * *
39119412 CAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAAT
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGATT--CAAT
* * * *
39119477 CTTCGACCTATTCCACTGCTGACCAGGGAGATAGGA--T----TC----ACCTATTCCACTGA-T
64 CTTCAACCTATTCCACTACTGACCAGGGAGATAAGATCTACAATCTTAAACCTCTTCCACT-ACT
* *
39119531 GACCAGGGAGATAGG-------A--TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTAC
128 GACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG------
* * * *
39119586 AATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTG
187 AAT-TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTA
*
39119651 CTGGC
251 CTGAC
* * * * * * *
39119656 TAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGG-CT-AGTG
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGAT-AGGATTCAAT-
* ** * * * ** ** *
39119719 GCTTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATAAGAT-TCGCCGTCTTCGATCTGC-TCCA
64 -CTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGATCT-ACAATCTTAAACCT-CTTCCA
* * ** * * *
39119780 CTACT-ACTTTA-GGAGATAAGA-TCTGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGAT
123 CTACTGAC--CAGGGAGATAGGATTC-ACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGAT
* *
39119841 AGGATTCACAATCTTCAACCTATTCCATTGCTGACCAAGGG-GATAGGATTTACAATCTTCAACC
184 AGG------AAT-TTCAACCTATTCCACTGCTGACC-AGGGAGATAGGACTTACAATCTTCAACC
*
39119905 TATTCCACTGCTGAC
241 TATTCCACTACTGAC
* *
39119920 CAGGGAGATAGG-------A--TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAAT
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGA-TT-CAAT
** * * * * *
39119975 CTTCAACCTATTCCACTGTTGATCAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTCCT
64 CTTCAACCTATTCCACTACTGACCAGGGAGATAAGATCT-ACAATCTTAAACCTCTTCCACTACT
* * * * * *
39120039 GACTAGGGAGATTGGACTT-ACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAG
128 GACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGAT-AGG--AA
* * * * * * * ** ** * ** ** *
39120103 TGGCTT-ACATCTGCTTCC-CTACT-ACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCT
189 T---TTCA-ACCT-ATTCCACTGCTGACC-AGG-GAGATAGGACTTACAATCTTCAACCTATTCC
39120165 ACTACTG-C
247 ACTACTGAC
* * * * *** * * * *
39120173 TTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGC-TGCTCAGGGAGATAGGATTCACA
1 -CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTAC-CAGGGAGATAGGATT--CA
* * * * *
39120237 ATCTTCAACCTCTTACACTACTGACCAGGCAGATAGGAT-TCACAATCTTAAACCTATTCCACTA
62 ATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGATCT-ACAATCTTAAACCTCTTCCACTA
* * * * * * * * ** *
39120301 CTGGCAAGGGAGATAGGATTGACCTAT-TTC-A-CTACT-GACTAGGCAT-A--TATGACTTA-C
126 CTGACCAGGGAGATAGGATTCA-CAATCTTCAACCTATTCCACT--GC-TGACCAAGGAGATAGG
* **** * ** *
39120358 AATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-C-TAGTGGCTTAAATTTGCTTCC-C
187 AAT-TTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTTACAATCTTCAACCT-ATTCCAC
39120420 TACT-AC
249 TACTGAC
* ** * * ** * * ** * ** *
39120426 CTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTAC-TGCTTTGGGAGATAAGATCTGC
1 C-AGGG-AGATAGGACTCACAATCTTCAACCTATTCCACTACTTAC-CAGGGAGATAGGAT-T-C
* * * * * * * * * *
39120490 AATTTTCACCCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATT
61 AATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATCTACAATCTTAAACCTCTTCCACT
* *
39120554 GCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGG-A-
125 ACTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGAAT
**
39120617 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGA
190 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGA
39120681 C
255 C
* * * *
39120682 CAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAAT
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGA-TT-CAAT
* **** *
39120747 CTTCAACCTATTCCACTACTGACCAGGGAGATAAG-GCTAGTGGCTTAAATCTCCTTCC-CTACT
64 CTTCAACCTATTCCACTACTGACCAGGGAGATAAGATCTACAATCTTAAACCT-CTTCCACTACT
* * * ** * * ** * *
39120810 -ACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTG-CTTAGGGAGATAAGATC
128 GACC-AGGG-AGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGAT-AG---
* * *
39120873 TGTAATTGTCAACCTACTT-CACTGCTG-CTCAGGGAGAGAAGA-TTCACAATCTTTAACCTATT
186 -G-AATT-TCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATT
*
39120935 ACACTACTGAC
245 CCACTACTGAC
* * * * *
39120946 CAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTAC-TAACAGGGGAGAGAGG-----A--
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCA-GGGAGATAGGATTCAATC
* ** * **** ** *
39121003 TTC-ACCTATTTCACTGTTGACCAGGGAGATAAG-GCTAGTGGCTTAAATTTGCTTCC-TTACT-
65 TTCAACCTATTCCACTACTGACCAGGGAGATAAGATCTACAATCTTAAACCT-CTTCCACTACTG
* * * * * * ** * * *
39121064 ACCTTGGGAAGATAAGATTCGCTATCTTCGATCTGCTGCACTGCTG-CTTAGGGAGATAAGATCT
129 ACC-AGGG-AGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGAT-AG----
* * * *
39121128 GTAATTTTCAACCTACTT-CATTGTTG-CTCAGGGAGATA-GAATTCACAATCTTCAGCCTATTC
186 G-AA-TTTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTC
* *
39121190 TACTGCTGAC
246 CACTACTGAC
* * * * * *
39121200 CAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTC-A---
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGATTCAATCT
* * * * *
39121261 T----CTATTCCACTGCTAACCAGGGAGATAGGA-CTTACAATCTTAAACCTATTCCACTATTGA
66 TCAACCTATTCCACTACTGACCAGGGAGATAAGATC-TACAATCTTAAACCTCTTCCACTACTGA
* * *
39121321 CCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAA
130 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG------AA
* * **** * ** ** *
39121386 TCTTCAACCTGTTCCACTTCTGACCAGGGAGATAAGG-C-TAGTGGCTTAAATTTGCTCCCCTAC
189 T-TTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTTACAATCTTCAACCTATTCCACTAC
39121449 T-AC
252 TGAC
* * * * ** * ** ** * * * * *
39121452 CTTGGGAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTT-CTTAGAGAGATAAGATTTGT
1 C-AGGG-AGATAGGACTCACAATCTTCAACCTATTCCACTACTTAC-CAGGGAGATAGGA-TT-C
* * * * * * * *
39121516 AATTTTCAACCTACTCCACTGCTG-CTCAGGGACATAGGAT-TCACAATCCTCAACCTCTTACAC
61 AATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATCT-ACAATCTTAAACCTCTTCCAC
* * * *
39121579 TGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTTCACTGCTGA-AAAGGGAGATAGG-
124 TACTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAA-GGAGATAGGA
* * * *
39121642 A-TT-GACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACT
188 ATTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACT
39121705 GAC
253 GAC
**** * * * * * *
39121708 CAGGGAGATAAGG-CT-AGTGGCTTACATCTTCTTCC-CTAC-TACCTTCGGAAGATATGATTCG
1 CAGGGAGAT-AGGACTCACAATCTT-CAACCTATTCCACTACTTACC--AGGGAGATAGGATT--
** * ** * ** ** * *
39121769 CCGTCTTCAATCTGCTCAACTACTG-CTTTGGGAGATAAGATCTGTAATTTTCAACCT-TCTCCA
60 CAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAGATCTACAATCTTAAACCTCT-TCCA
** * *
39121832 CTGTTG-CTAAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG
123 CTACTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG
* * **
39121896 -A-TTC-ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGT
187 AATTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTAC
39121958 TGAC
252 TGAC
* * *
39121962 CAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAAT
1 CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGA-TT-CAAT
* *
39122027 CTTCAACCTGTTGCACTACTGACCAGGGAGATAAG
64 CTTCAACCTATTCCACTACTGACCAGGGAGATAAG
39122062 GCTAGTGGCT
Statistics
Matches: 1796, Mismatches: 436, Indels: 338
0.70 0.17 0.13
Matches are distributed among these distances:
241 2 0.00
242 3 0.00
243 12 0.01
244 55 0.03
245 4 0.00
249 1 0.00
250 2 0.00
251 2 0.00
252 13 0.01
253 98 0.05
254 992 0.55
255 129 0.07
256 25 0.01
257 18 0.01
258 1 0.00
259 1 0.00
260 2 0.00
261 9 0.01
262 4 0.00
263 26 0.01
264 388 0.22
265 9 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (255 bp):
CAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTTACCAGGGAGATAGGATTCAATCT
TCAACCTATTCCACTACTGACCAGGGAGATAAGATCTACAATCTTAAACCTCTTCCACTACTGAC
CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGAATTTCAAC
CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGAC
Found at i:39120825 original size:640 final size:636
Alignment explanation
Indices: 39120205--39122313 Score: 2360
Period size: 640 Copynumber: 3.3 Consensus size: 636
39120195 TTTCAACCTA
* * ** * *
39120205 CTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT-CTTACACTACTGAC-CAGGCA
1 CTCCACTGCTGCTTAGGGAGATAAGATTCGTAAT-TTCAACCTACTT-CACTGCTG-CTCAGGGA
* *
39120268 GATAGGATTCACAATCTTAAACCTATTCCACTACTGGCAAGGGAGATAGGATTGACCTAT-TTC-
63 GATAGGATTCACAATCTTAAACCTATTACACTACTGACAAGGGAGATAGGATT-ACCTATATTCA
* * * * ** * * *
39120331 A-CTACTGACTAGGC-ATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
127 ACCTATTCACTA-GCTA-AAAGGAGATAGAA--TTC-ACCTATTTCACTGCTGACCAGGGAGATA
* *
39120394 AGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTCTTCGATCTG
187 AGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCTGTCTTCGATCTG
* *
39120459 CTCCACTACTGCTTTGGGAGATAAGATCTGCAATTTTCACCCTACTCCATTGCTGCTCTGGGAGA
252 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCATTGCTGCTCTGGGAGA
*
39120524 TAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACC
317 TAAGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACC
*
39120589 TATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTT
382 TATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTT
39120654 ACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCAC
447 ACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCAC
* *
39120719 TGCTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGC
512 TGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGC
* *
39120784 TAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTG
577 TAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCG-TGTCTTCGATCTG
39120845 CTCCACTGCTGCTTAGGGAGATAAGA-TCTGTAATTGTCAACCTACTTCACTGCTGCTCAGGGAG
1 CTCCACTGCTGCTTAGGGAGATAAGATTC-GTAATT-TCAACCTACTTCACTGCTGCTCAGGGAG
* * * * *
39120909 AGAAGATTCACAATCTTTAACCTATTACACTACTGACCAA-GGAGATAGGATT-CATAATCTTCA
64 ATAGGATTCACAATCTTAAACCTATTACACTACTGA-CAAGGGAGATAGGATTACCT-ATATTCA
* * * *
39120972 ACCTATTCCACTA-CTAACAGGGGAGAGAGGATTCACCTATTTCACTGTTGACCAGGGAGATAAG
127 ACCTATT-CACTAGCTAA-A-AGGAGATAGAATTCACCTATTTCACTGCTGACCAGGGAGATAAG
* *
39121036 GCTAGTGGCTTAAATTTGCTTCCTTACTACCTTGGGAAGATAAGATTCGCTATCTTCGATCTGCT
189 GCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCTGTCTTCGATCTGCT
* * * * * *
39121101 GCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGAGAT-
254 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATA
* * * *
39121165 AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAACCT
319 AG-ATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCT
* * * * *
39121230 ATTCGACTGCTGACTAGGGAGATAGGATTCATCTATTCCACTGCTAACCAGGGAGATAGGACTTA
383 ATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTA
* * * *
39121295 CAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACT
448 CAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACT
*
39121360 G-TTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAGGGAGATAAGGC
513 GCTT-ACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGC
* * * * *
39121424 TAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATTTG
577 TAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCG-TGTCTTCGATCTG
* * * * * * * *
39121485 GTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACA
1 CTCCACTGCTGCTTAGGGAGATAAGATTCGTAA-TTTCAACCTACTTCACTGCTGCTCAGGGAGA
* * * * * *
39121550 TAGGATTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATT-CACAATATTCAAC
65 TAGGATTCACAATCTTAAACCTATTACACTACTGACAAGGGAGATAGGATTAC-CTATATTCAAC
* * * * *
39121614 CTATTTCACT-GCTGAAAAGGGAGATAGGATTGACCTATTTCACTGCTGACTAGGGAGATATGAC
129 CTA-TTCACTAGCT-AAAA-GGAGATAGAATTCACCTATTTCACTGCTGACCAGGGAGATAAGGC
**** * ** * * ** * * *
39121678 TTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGGCTAG-TGGCTTAC-ATCTT
191 -TAGTGGCTTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCTGTCTT-CGATCTG
* * * * ** * * * * * * *
39121738 CTTCC-CTACTACCTTCGGAAGATATGAT-TCGCCGTCTTCAATCTGCTCAACTACTGCTTTGGG
252 C-TCCACTACT-GCTTAGGGAGATAAGATCT-GCAATTTTCAACCTACTCCATTGCTGCTCTGGG
* ** * * * *
39121801 AGATAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-CTAAGAGAGATAGGATTCACAATCTT
314 AGATAAGATTTACAATCTTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTT
*
39121864 CAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACCAGGGAGATAG
377 CAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAG
*
39121929 GACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAAT
442 GACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAAT
*
39121994 TCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGAT
507 TCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGAT
* ** * * *
39122059 AAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGATTT
572 AAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTC-GTGTCTTCGATCT
39122124 G
636 G
* * * * ** * ** *
39122125 GTCTACTACAGCTTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGA
1 CTCCACTGCTGCTTAGGGAGATAAGATTCGTAA-TTTCAACCTACTTCACTGCTGCTCAGGGAGA
** * * * * *
39122190 TAGGATTCACAATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATT-CACAATCTTCAAC
65 TAGGATTCACAATCTTAAACCTATTACACTACTGACAAGGGAGATAGGATTAC-CTATATTCAAC
* * * * *
39122254 CTATTCCACTA-CTGACAAGGGAGATAGGATGCACCTAGTTCACTGCTGACTAGGGAGATA
129 CTATT-CACTAGCT-A-AAAGGAGATAGAATTCACCTATTTCACTGCTGACCAGGGAGATA
39122314 TGACTTACAA
Statistics
Matches: 1267, Mismatches: 164, Indels: 76
0.84 0.11 0.05
Matches are distributed among these distances:
638 2 0.00
639 30 0.02
640 1179 0.93
641 40 0.03
642 8 0.01
643 8 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (636 bp):
CTCCACTGCTGCTTAGGGAGATAAGATTCGTAATTTCAACCTACTTCACTGCTGCTCAGGGAGAT
AGGATTCACAATCTTAAACCTATTACACTACTGACAAGGGAGATAGGATTACCTATATTCAACCT
ATTCACTAGCTAAAAGGAGATAGAATTCACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTG
GCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTAC
TGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTA
CAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACT
GCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTC
AACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCA
GGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTT
AAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGTGTCTTCGATCTG
Found at i:39121164 original size:684 final size:683
Alignment explanation
Indices: 39119661--39121419 Score: 2084
Period size: 684 Copynumber: 2.6 Consensus size: 683
39119651 CTGGCTAAGG
* * * * * * *
39119661 AGATAGGACTTACAATCTTCAACCTGTTCCACTACTAACCAGGGAGATAAGGCTAGTGGCTTAAA
1 AGATAAGACTTACAAGCTTAAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTAGCTTAAA
* * * ** * * * * *
39119726 TTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTA
66 TCTGCTGCACTACTACCTTGGGAAGATAAGATTCGCAATCTTCAACCTACTCCACTACTGC-TCA
* *
39119791 -GGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCT
130 GGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCT
39119855 TCAACCTATTCCATTGCTGACCAAGGG-GATAGGATTTACAATCTTCAACCTATTCCACTGCTGA
195 TCAACCTATTCCATTGCTGACC-AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGA
*
39119919 CCAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCT
258 CCAGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCT
* *
39119984 ATTCCACTGTTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACTAGGGAG
323 ATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAG
* * *
39120049 ATTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATC
388 ATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATC
* * * * *
39120114 TGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAG
453 TCCTTCCCTACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAG
* * * *
39120179 AGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
518 AGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCA
* **
39120244 ACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTGGCAAG
583 ACCTATTACACTACTGACCAGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAG
* * *
39120309 GGAGATAGGATTGACCTATTTCACTACTGACTAGGC
648 GGAGAGAGGATTCACCTATTTCACTACTGACCAGGC
* * * * * *
39120345 ATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAA
1 AGATAAGACTTACAAGCTTAAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTAGCTTAAA
* * * * ** * * * **
39120410 TTTGCTTCCCTACTACCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTG
66 TCTGCTGCACTACTACCTTGGGAAGATAAGATTCGCAATCTTCAACCTACTCCACTACTGCTCAG
* * * *
39120475 GGAGATAAGATCTGCAATTTTCACCCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTT
131 GGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCTT
*
39120540 CAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACC
196 CAACCTATTCCATTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACC
*
39120605 AAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
260 AGGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
* * * **
39120670 TCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTTCCAGGGAGAT
325 TCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGAT
39120735 AGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTC
390 AGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTC
* * * * *
39120800 CTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTGCTGCTTAGGGAG
455 CTTCCCTACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAG
* *
39120865 ATAAGATCTGTAATTGTCAACCTACTTCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTTAAC
520 ATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAAC
* * *
39120930 CTATTACACTACTGACCAAGG-AGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGG
585 CTATTACACTACTGACC-AGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAGG
** *
39120994 GAGAGAGGATTCACCTATTTCACTGTTGACCAGGG
649 GAGAGAGGATTCACCTATTTCACTACTGACCAGGC
* *** ** * * * * * *
39121029 AGATAAGGC-TAGTGGCTTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATAAGATTCGCTATCT
1 AGATAAGACTTACAAGCTTAAACCT-ATTCCACTACTGACC-AGGG-AGATAAGACTAG-TAGCT
** * * * * * * **
39121091 TCGATCTGCTGCACTGCT-GCTTAGGG-AGATAAGA-TCTGTAATTTTCAACCTACTTCATTGTT
62 TAAATCTGCTGCACTACTACCTT-GGGAAGATAAGATTC-GCAATCTTCAACCTACTCCACTACT
* * * * * *
39121153 GCTCAGGGAGAT-AGAAT-TCACAATCTTCAGCCTATTCTACTGCTGAC-CAGGGAGATATGATT
125 GCTCAGGGAGATAAG-ATCT-GCAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAAGATT
* * *
39121215 CACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATT-C-A---T----CTATTCCAC
187 CACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCAC
* **
39121271 TGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGAC
252 TGCTGACCAGGGAGATAGGA--T----TC----ACCTATTCCACTGCTGACCAGGGAGATAGGAC
* * *
39121336 TCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCC
307 TTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCC
*
39121401 ACTTCTGACCAGGGAGATA
372 ACTCCTGACCAGGGAGATA
39121420 AGGCTAGTGG
Statistics
Matches: 934, Mismatches: 118, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
674 26 0.03
676 1 0.00
678 1 0.00
680 2 0.00
681 1 0.00
682 4 0.00
683 28 0.03
684 849 0.91
685 22 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (683 bp):
AGATAAGACTTACAAGCTTAAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTAGCTTAAA
TCTGCTGCACTACTACCTTGGGAAGATAAGATTCGCAATCTTCAACCTACTCCACTACTGCTCAG
GGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATTCACAATCTT
CAACCTATTCCATTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCA
GGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATT
CCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATA
GGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCC
TTCCCTACTACCTCGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGA
TAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACC
TATTACACTACTGACCAGGCAGATAGGATTCACAATCTTAAACCTATTCCACTACTAACAAGGGA
GAGAGGATTCACCTATTTCACTACTGACCAGGC
Found at i:39121628 original size:386 final size:376
Alignment explanation
Indices: 39120918--39121717 Score: 1061
Period size: 386 Copynumber: 2.1 Consensus size: 376
39120908 GAGAAGATTC
* * * * *
39120918 ACAATCTTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCAC
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
*
39120983 TACTAACAGGGGAGAGAGGATTCACCTATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
66 TACTAACAGGGGAGAGAGGATTCACCAATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
* * * * *
39121048 AATTTGCTTCCTTACTACCTTGGGAAGATAAGATTCGCTATCTTCGATCTGCTGCACTGCTGCTT
131 AATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCATCTTCGATCTGCTGCACTACTGCTT
* * * * *
39121113 AGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGAGATAGAATTCACAATC
196 AGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGAATTCACAATC
* * * *
39121178 TTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAATCTTCAACCTATTCGACTGCTGA
261 CTCAACCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTCGACTGCTGA
** *
39121243 CTAGGGAGATAGGATTCATCTATTCCACTGCTAACCAGGGAGATAGGACTT
326 AAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTT
*
39121294 ACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
** * *
39121359 TGTTGACCA-GGGAGATAGGACTTACAATCTTCAACCTGTTCCACT-TCTGACCAGGGAGATAAG
66 TACT-AACAGGGGAGAGAGGA-TT-C-A-C--CAA--T-TT-CACTGT-TGACCAGGGAGATAAG
* * *
39121422 GCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATTTGGT
119 GCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCATCTTCGATCTGCT
* *
39121487 -CTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACAT
184 GC-ACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACAT
* *
39121551 AGGATTCACAATCCTCAACCTCTTAC-ACTGCTGACCAGGGAGATAGGATTCACAATATTCAACC
248 AGAATTCACAATCCTCAACCTATT-CTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACC
* * * * *
39121615 TATTTC-ACTGCTGAAAAGGGAGATAGGATTGACCTATTTCACTGCTGACTAGGGAGATATGACT
312 TA-TTCGACTGCTGAAAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACT
39121679 T
376 T
*
39121680 ACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
1 ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATA
39121718 AGGCTAGTGG
Statistics
Matches: 367, Mismatches: 42, Indels: 20
0.86 0.10 0.05
Matches are distributed among these distances:
376 71 0.19
377 5 0.01
378 1 0.00
379 1 0.00
380 1 0.00
382 2 0.01
384 1 0.00
385 4 0.01
386 277 0.75
387 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (376 bp):
ACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCAC
TACTAACAGGGGAGAGAGGATTCACCAATTTCACTGTTGACCAGGGAGATAAGGCTAGTGGCTTA
AATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCATCTTCGATCTGCTGCACTACTGCTT
AGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGAATTCACAATC
CTCAACCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTCGACTGCTGA
AAAGGGAGATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTT
Found at i:39121909 original size:34 final size:34
Alignment explanation
Indices: 39121866--39121930 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
39121856 ACAATCTTCA
*
39121866 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
1 ACCTATTCCACTCCTGACCAAGGAGATAGGATTC
*
39121900 ACCTATTCCACTCCTGACCAGGGAGATAGGA
1 ACCTATTCCACTCCTGACCAAGGAGATAGGA
39121931 CTTAAAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTCCTGACCAAGGAGATAGGATTC
Found at i:39121950 original size:298 final size:298
Alignment explanation
Indices: 39121304--39122015 Score: 880
Period size: 298 Copynumber: 2.4 Consensus size: 298
39121294 ACAATCTTAA
* *
39121304 ACCTATTCCACT-ATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCA
1 ACCTATTCCACTCA-TGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCA
* *
39121368 GGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAGGGAGATAAGGCTAGTGGCTT
65 GGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTT
* * * * * *
39121433 AAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTTCT
130 AAATTTGCTCCCCTACTACCTTCGGAAGATAAGAATCGCCGTCTTCAATCTGCTCAACTACTGCT
* * *
39121498 TAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAAT
195 TAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTAAGAGACATAGGATTCACAAT
* *
39121563 CCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTC
260 CCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTC
* * ** * * * ** ** * * *
39121602 ACAATATTCAAC-CTATTTCACTGCTGA-AAAGGGAGATAGGA--TT-GACCTATTTCACTGCTG
1 AC-CTATTCCACTC-ATGAC-CAG-GGAGATA-GGACTTAAAATCTTCAACCTATTCCACTGTTG
* *
39121662 ACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTG
61 ACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTG
* * * *
39121727 GCTTACATCTT-CTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTA
126 GCTTAAAT-TTGCTCCCCTACTACCTTCGGAAGATAAGAATCGCCGTCTTCAATCTGCTCAACTA
* * * * *
39121791 CTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTTCTCCACTGTTGCTAAGAGAGATAGGATTC
190 CTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTAAGAGACATAGGATTC
* *
39121856 ACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
255 ACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTC
*
39121900 ACCTATTCCACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTCATGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
* * * * *
39121965 GGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATA
66 GGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
39122016 GGACTTACAA
Statistics
Matches: 339, Mismatches: 63, Indels: 24
0.80 0.15 0.06
Matches are distributed among these distances:
295 8 0.02
296 4 0.01
297 11 0.03
298 291 0.86
299 13 0.04
300 5 0.01
301 7 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (298 bp):
ACCTATTCCACTCATGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
GGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
AATTTGCTCCCCTACTACCTTCGGAAGATAAGAATCGCCGTCTTCAATCTGCTCAACTACTGCTT
AGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTAAGAGACATAGGATTCACAATC
CTCAACCTATTACACTGCTGACCAAGGAGATAGGATTC
Found at i:39122105 original size:298 final size:289
Alignment explanation
Indices: 39121843--39122405 Score: 643
Period size: 298 Copynumber: 1.9 Consensus size: 289
39121833 TGTTGCTAAG
* **
39121843 AGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGATAGGATTCAC-CT-A
1 AGAGATAAGATTCACAATCTTCAACCTACACCACTGCTG-CTCAAGGAGATAGGATTCACACTAA
* ** *
39121905 -TTCCACTCCTGACCAGGGAGATAGGACTT-AAAATCTTCAACCTATTCCACTGTTGACCAGGGA
65 CTTACACTCCTGACCAGGGAGATAGGA-TTCAAAATCTTCAACCTATTCCACTACTGACAAGGGA
*
39121968 GATAGGACT-CACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCA
129 GATAGGA-TGCAC---C--T----AATT-CACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
* *
39122032 ACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGG
183 ACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGG
* * * *
39122097 GAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTTAA
248 GAAGATAAG-AT-ACCGTATTTAACTTGCTCCACTACAGCTTAA
*** * * *
39122141 AGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGATAGGATTCACAATCTG
1 AGAGATAAGATTCACAATCTTCAACCTACACCACTGCTGCTCAAGGAGATAGGATTCAC-A-CT-
* *
39122206 CAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
63 -AA---CTTACACTCCTGACCAGGGAGATAGGATTCAAAATCTTCAACCTATTCCACTACTGACA
* * *
39122271 AGGGAGATAGGATGCACCTAGTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAT
124 AGGGAGATAGGATGCACCTAATTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
* *
39122336 TCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGAAGAT
189 TCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGAT
39122401 AAGAT
254 AAGAT
39122406 TCACCGTCTT
Statistics
Matches: 229, Mismatches: 23, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
297 3 0.01
298 151 0.66
299 3 0.01
301 2 0.01
303 1 0.00
304 1 0.00
305 1 0.00
307 3 0.01
308 64 0.28
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (289 bp):
AGAGATAAGATTCACAATCTTCAACCTACACCACTGCTGCTCAAGGAGATAGGATTCACACTAAC
TTACACTCCTGACCAGGGAGATAGGATTCAAAATCTTCAACCTATTCCACTACTGACAAGGGAGA
TAGGATGCACCTAATTCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTA
CTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATAC
CGTATTTAACTTGCTCCACTACAGCTTAA
Found at i:39122314 original size:640 final size:638
Alignment explanation
Indices: 39120511--39122458 Score: 2617
Period size: 640 Copynumber: 3.0 Consensus size: 638
39120501 TACTCCATTG
* * ** * * * *
39120511 CTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTC
1 CTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGACAAGAGAGATAGGATTC
*
39120576 ACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAG
66 ACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAG
39120641 GGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTT
131 GGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTT
* *
39120706 TAACCAATTCCACTGCTTTCCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACC
196 TAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACC
* * * *
39120771 AGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTC
261 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTC
* * * * * * * *
39120836 TTCGATCTGCTCCACTGCTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTTCACTGCTGC
326 TTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGC
* * * * * * *
39120901 TCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTACTGACCAAGGAGATAGGATTCATAA
391 TCAGGGAGATAGGATTCACAATC-TCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAA
* * * * * *
39120966 TCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTTCACTGTTGACCAGGGAG
455 TCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATGCACCTATTTCACTGCTGACTAGGGAG
* * **** * ** * * * ** * **
39121031 ATAAGGC-TAGTGGCTTAAATTTGCTTCC-TTACT-ACCTTGGGAAGATAAGATTCGCTATCTT-
520 ATATGACTTACAATCTTCAACCT-ATTCCACTACTGACC-AGGG-AGATAAGGCTAG-TGGCTTA
* * * * * * *** * * * * *
39121092 CGATCTGCTGCACTGCT-GCTTAGGGAGATAAGA-TCTGTAATTTTCAACCTACTTCATTG
581 C-ATCTTCTTCCCTACTACCTTAGGAAGATAAGATTC-GCCGTCTTCAATCTGC-TCACTA
* ** ** * * * * * *
39121151 TTGCTCAGGGAGAT-AGAAT-TCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGAT
1 CTGCTTTGGGAGATAAG-ATCT-GTAATTTTCAACCTATTCCACTGCTGACAAGAGAGATAGGAT
* * * * *
39121214 TCACAATCTTCAACCTATTCGACTGCTGACTAGGGAGATAGGATTCATCTATTCCACTGCTAACC
64 TCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACC
* *
39121279 AGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATC
129 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
* * *
39121344 TTCAACCTATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTG
194 TTTAACCAATTCCACTGCTT-ACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTG
* *
39121408 ACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCC
258 ACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGCC
*
39121473 GTCTTCGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGC
323 GTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGC
*
39121538 TGCTCAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCA
388 TGCTCAGGGAGATAGGATTCACAAT-CTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCA
* * * *
39121603 CAATATTCAACCTATTTCACTGCTGAAAAGGGAGATAGGATTG-ACCTATTTCACTGCTGACTAG
452 CAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGA-TGCACCTATTTCACTGCTGACTAG
39121667 GGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
516 GGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
* *
39121732 CATCTTCTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGCTCAACTA
581 CATCTTCTTCCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCAATCTGCTC-ACTA
*
39121791 CTGCTTTGGGAGATAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-CTAAGAGAGATAGGAT
1 CTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTAT-TCCACTGCTGAC-AAGAGAGATAGGAT
*
39121854 TCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCCTGACC
64 TCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACC
*
39121919 AGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
129 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
*
39121984 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGA
194 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGA
*
39122049 CCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCG
259 CCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGCCG
* * * * *
39122114 TATTTGATTTGGTCTACTACAGCTTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCT
324 TCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCT
*
39122179 GCTTAGGGAGATAGGATTCACAATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCAC
389 GCTCAGGGAGATAGGATTCACAATCT-CAACCTCTTACACTGCTGACCAGGGAGATAGGATTCAC
*
39122244 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATGCACCTAGTTCACTGCTGACTAGGG
453 AATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATGCACCTATTTCACTGCTGACTAGGG
39122309 AGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA-A
518 AGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACA
* * *
39122373 GTCTTCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTA
583 -TCTTCTTCCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCAATCTGCT-CACTA
39122431 CTGCTTTGGGAGATAAGATCTGTAATTT
1 CTGCTTTGGGAGATAAGATCTGTAATTT
39122459 CTATTCCACT
Statistics
Matches: 1157, Mismatches: 130, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
639 29 0.03
640 1100 0.95
641 25 0.02
642 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (638 bp):
CTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGACAAGAGAGATAGGATTC
ACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAG
GGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTT
TAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACC
AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTC
TTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGC
TCAGGGAGATAGGATTCACAATCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAAT
CTTCAACCTATTCCACTACTGACAAGGGAGATAGGATGCACCTATTTCACTGCTGACTAGGGAGA
TATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCT
TCTTCCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCAATCTGCTCACTA
Found at i:39122403 original size:342 final size:335
Alignment explanation
Indices: 39121654--39122357 Score: 822
Period size: 342 Copynumber: 2.1 Consensus size: 335
39121644 TGACCTATTT
* * * * * *
39121654 CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
1 CACTACTGACCAGGGAGATAGGACTTACAAGCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
* * * * * *
39121719 GGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCGCCGTCTTCAATCTGC
66 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGC
* *** * * *
39121784 TCAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTTCTCCACTGTTGCTAAGAGAGAT
131 TCAACTACAGCTTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTAAGAGAGAT
* * *
39121849 AGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTCC
196 AGGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTAC
* * *
39121914 TGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCA
261 TGACAAGGGAGATAGG------AA-CTGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCA
*
39121979 CAATCTTTAACCAATTC
319 CAATCTTCAACCAATTC
* * *
39121996 CACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
1 CACTACTGACCAGGGAGATAGGACTTACAAGCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
* ** * *
39122061 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGATTTGG
66 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGC
* * * *
39122126 TCTACTACAGCTTAAAGAGATAAGATTTGTAATTTTCAACCTACACCACTGCTGCTTAGGGAGAT
131 TCAACTACAGCTTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTAAGAGAGAT
* *
39122191 AGGATTCACAATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCT
196 AGGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGG-------A--TTC-ACCT
* *
39122256 ATTCCACTACTGACAAGGGAGATAGG-A-TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGA
251 ATTCCACTACTGACAAGGGAGATAGGAACTGCAACCTA-TTCCACTGCTGACCAGGGAGATAGGA
* *
39122317 CTTACAATCTTCAACCTATTC
315 CTCACAATCTTCAACCAATTC
39122338 CACTACTGACCAGGGAGATA
1 CACTACTGACCAGGGAGATA
39122358 AGGCTAGTGG
Statistics
Matches: 309, Mismatches: 42, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
342 272 0.88
343 4 0.01
345 1 0.00
349 1 0.00
351 3 0.01
352 28 0.09
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (335 bp):
CACTACTGACCAGGGAGATAGGACTTACAAGCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTGC
TCAACTACAGCTTAAAGAGATAAGATCTGTAATTTTCAACCTACACCACTGCTGCTAAGAGAGAT
AGGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTAC
TGACAAGGGAGATAGGAACTGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTT
CAACCAATTC
Found at i:39122412 original size:298 final size:302
Alignment explanation
Indices: 39121908--39122458 Score: 772
Period size: 298 Copynumber: 1.8 Consensus size: 302
39121898 TCACCTATTC
** *
39121908 CACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAG
1 CACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACAAGGGAGATAG
* *
39121973 GACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGT
66 GACTCAC-A-C-TT-A--AATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTAT
*
39122038 TGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGAT
125 TCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGAT
* * * * *
39122103 AAGAATCACCGTATTTGATTTGGTCTACTACAGCTTAAAGAGATAAGATTTGTAATTTTCAACCT
190 AAGAATCACCGTATTCGATCTGCTCCACTACAGCTTAAAGAGATAAGATCTGTAATTTTCAACCT
39122168 ACACCACTGCTGCTTAGGGAGATAGGATTCACAATCTGCAACCTCTTA
255 ACACCACTGCTGCTTAGGGAGATAGGATTCACAATCTGCAACCTCTTA
* *
39122216 CACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACAAGGGAGATA
1 CACTCCTGACCAGGGAGATAGGACTT-AAAATCTTCAACCTATTCCACTACTGACAAGGGAGATA
* * *
39122280 GGA-TGCAC-C-T-AGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCA
65 GGACT-CACACTTAAATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCA
* *
39122340 CTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGAAGATAAGA
129 CTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGA
* * * ***
39122405 TTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
194 ATCACCGTATTCGATCTGCTCCACTACAGCTTAAAGAGATAAGATCTGTAATTT
39122459 CTATTCCACT
Statistics
Matches: 217, Mismatches: 24, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
298 147 0.68
299 3 0.01
303 1 0.00
305 1 0.00
307 3 0.01
308 62 0.29
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (302 bp):
CACTCCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACAAGGGAGATAG
GACTCACACTTAAATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
ACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAAT
CACCGTATTCGATCTGCTCCACTACAGCTTAAAGAGATAAGATCTGTAATTTTCAACCTACACCA
CTGCTGCTTAGGGAGATAGGATTCACAATCTGCAACCTCTTA
Found at i:39122478 original size:127 final size:127
Alignment explanation
Indices: 39122332--39122585 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
39122322 AATCTTCAAC
39122332 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
1 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
39122397 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
66 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
39122459 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
1 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
39122524 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
66 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
39122586 TCAACCTACT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (127 bp):
CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTT
Found at i:39122720 original size:34 final size:34
Alignment explanation
Indices: 39122677--39122741 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
39122667 ACAATCTTCA
*
39122677 ACCTATTCCACTGTTGACCAGGGAGAGAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
* *
39122711 ACCTATTCCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGA
39122742 CCTACAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
Found at i:39122762 original size:78 final size:82
Alignment explanation
Indices: 39122628--39122868 Score: 312
Period size: 78 Copynumber: 2.9 Consensus size: 82
39122618 GATTCACAAT
*
39122628 CTTCAACCTATTCCATTGCTGACCAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTGTT
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCT-ACAATCTTCAACCTATTCCACTGTT
*
39122692 GACCAGGGAGA-G-AGGA
65 GACCAGGGAGACGCAGAA
*
39122708 -TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
*
39122771 ACCAGGGAGATACGACTCATAA
66 ACCAGGGAG--ACG---CAGAA
* * **
39122793 TCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTT
39122858 GACCAGGGAGA
65 GACCAGGGAGA
39122869 TAAGGCTAGT
Statistics
Matches: 141, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
78 64 0.45
79 5 0.04
80 1 0.01
81 1 0.01
85 2 0.01
86 1 0.01
87 3 0.02
88 64 0.45
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (82 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTG
ACCAGGGAGACGCAGAA
Found at i:39122806 original size:122 final size:122
Alignment explanation
Indices: 39122597--39122824 Score: 370
Period size: 122 Copynumber: 1.9 Consensus size: 122
39122587 CAACCTACTG
* * *
39122597 CACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
*
39122662 GACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTCACCTATTC
66 GACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAGAGGATTCACCTATTC
*
39122719 CACTGCTGACT-AGGGAGATAGGAC-CTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
1 CACTGCTG-CTCAGGGAGATAGGACTC-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
*
39122782 ACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
64 ACGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
39122825 TATGACTTAC
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 95 0.97
123 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (122 bp):
CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
GACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAGAGGATTCACCTATTC
Found at i:39122953 original size:386 final size:386
Alignment explanation
Indices: 39122459--39123168 Score: 1127
Period size: 386 Copynumber: 1.8 Consensus size: 386
39122449 TCTGTAATTT
* *
39122459 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGA
1 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
39122524 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCA
66 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCA
* * * * * *
39122589 ACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAG
131 ACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAG
* * ** * * *
39122654 GGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTCACCTATTC
196 AGAGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTATTC
* ** *
39122719 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAC
261 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAC
39122784 GACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAAC
326 GACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAAC
39122845 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
1 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
* * *
39122910 AGATAAGAATT-GCCTTCTTCGATCTGCTCTA-TGACTGCTTTGGGAGATAAGATCTGTAATTTT
66 AGATAAG-ATTCACCGTCTTCGATCTGCTCCACT-ACTGCTTTGGGAGATAAGATCTGTAATTTT
*
39122973 CAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACC
129 CAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACC
* *
39123038 AGAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACAAAGGAGATAAGATTCACCTAT
194 AGAGAGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTAT
** * *
39123103 TTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGAT
259 TCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAGAGAGAT
39123168 A
324 A
39123169 AGGCTAGTGG
Statistics
Matches: 293, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
385 1 0.00
386 289 0.99
387 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (386 bp):
CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCA
ACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAG
AGAGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTATTC
CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAC
GACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAAC
Found at i:39123045 original size:44 final size:44
Alignment explanation
Indices: 39122996--39123098 Score: 154
Period size: 44 Copynumber: 2.3 Consensus size: 44
39122986 TACTGCTCAC
* *
39122996 GGAGATAGGATTCACAATCTACAACCTATTACACTGCTGAC-CA
1 GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
39123039 GAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACAAA
1 G-GAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
39123084 GGAGATAAGATTCAC
1 GGAGATAGGATTCAC
39123099 CTATTTTACT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 51 0.94
45 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (44 bp):
GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
Found at i:39123112 original size:298 final size:298
Alignment explanation
Indices: 39122799--39123352 Score: 853
Period size: 298 Copynumber: 1.9 Consensus size: 298
39122789 ATAATCTTCA
*
39122799 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
* *
39122864 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATT-GCCTTCT
66 AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAG-ATTCGCCATCT
* * * * *
39122928 TCGATCTGCTCTA-TGACTGCTTTGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGC
130 TCGATCTACTCCACT-ACTGCTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGC
39122992 TCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACC-AGAGAGATAGGATTCACA
194 TCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAG-GAGATAGGATTCACA
39123056 ATCTTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
258 ATCTTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
** *
39123097 ACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
* *
39123162 AGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCATCTT
66 AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCATCTT
** * * **
39123227 TTATCTACTCCACTACTGCTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTGCTC
131 CGATCTACTCCACTACTGCTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTC
* * * *
39123292 AGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAC
196 ACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAGGAGATAGGATTCAC
39123353 CTATCCCACT
Statistics
Matches: 230, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
297 3 0.01
298 224 0.97
299 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (298 bp):
ACCTATTCCACTGCTGACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
AGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCATCTT
CGATCTACTCCACTACTGCTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTC
ACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATC
TTCAACCTATTACACTACTGACAAAGGAGATAAGATTC
Found at i:39123277 original size:254 final size:254
Alignment explanation
Indices: 39123017--39123585 Score: 793
Period size: 254 Copynumber: 2.2 Consensus size: 254
39123007 TCACAATCTA
* * *
39123017 CAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACA
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
*** *
39123082 AAGGAGATAAGATTCACCTATTTTACTGCTGACTAGGGAGATAT-GACTTACAATCTTCAACCTA
66 AAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGAT-TGGACTTACAATCTTCAACCTA
* *
39123146 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGA
130 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
* ** * *
39123211 TAAGATTCGCCATCTTTTATCTACTCCACTACTGCTTTGGGAAATAAGATTTATAATTTT
195 TAAGAATCGCCATCTTCGATCTACTCCACTACTGCTTAGGGAAATAAGATCTATAATTTT
* * * * *
39123271 CAACCTACTCCATTGTTG-CTCAGGGAGATAGGATTCAGAATCTTCAACCTATTCCACTGCTGAC
1 CAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * *
39123335 CAAGGAGATAGGATTCACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTTAACCTA
65 AAAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTCAACCTA
** *
39123400 TTCCTCTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
130 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
* * * * * *
39123465 TAAGAATCGCCGTCTTCGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTT
195 TAAGAATCGCCATCTTCGATCTACTCCACTACTGCTTAGGGAAATAAGATCTATAATTTT
* *
39123525 CAACCTATTCCACTACTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACT
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACT
39123586 AACCAGGAAG
Statistics
Matches: 273, Mismatches: 38, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
253 2 0.01
254 268 0.98
255 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (254 bp):
CAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
AAGGAGATAAGATTCACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTCAACCTAT
TCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGAT
AAGAATCGCCATCTTCGATCTACTCCACTACTGCTTAGGGAAATAAGATCTATAATTTT
Found at i:39123401 original size:298 final size:297
Alignment explanation
Indices: 39122755--39123422 Score: 803
Period size: 298 Copynumber: 2.2 Consensus size: 297
39122745 ACAATCTTCA
* * * * *
39122755 ACCTATTCCACTGTTGACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTA-AATCTTTAACCTATTCCACTGCTGACCAG
* *
39122820 GGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
65 GGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTA
* * *
39122885 AATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCTTCTTCGATCTGCTCTATGACTGCTT
130 AATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTACTCCATGACTGCTT
* * *
39122950 TGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
195 TGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
39123015 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
260 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
* * * ** * * ** * **
39123053 A-CAATCTTCAACCT-ATTACACTACTGACAAAGGAGATAAGA---TTCACCTATTTTACTGCTG
1 ACCTATC--CCA-CTGATGAC-C-AGGGAGATAGGACTTAA-ATCTTTAACCTATTCCACTGCTG
*
39123113 ACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTG
60 ACCAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTG
* * **
39123178 GCTTAAATTTTCTTCCCTACTACCTTGGGAAGATAAG-ATTCGCCATCTTTTATCTACTCCACT-
125 GCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATT-GCCATCTTCGATCTACTCCA-TG
* * ** *
39123241 ACTGCTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGTTGCTCAGGGAGATAGGATT
188 ACTGCTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATT
* * *
39123306 CAGAATCTTCAACCTATTCCACTGCTGACCA-AGGAGATAGGATTC
253 CACAATCTACAACCTATTACACTGCTGACCAGA-GAGATAGGATTC
* * * *
39123351 ACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTA-AATCTTTAACCTATTCCACTGCTGACCAG
39123416 GGAGATA
65 GGAGATA
39123423 AGGCTAGTGG
Statistics
Matches: 300, Mismatches: 55, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
295 10 0.03
296 4 0.01
297 12 0.04
298 251 0.84
299 10 0.03
300 4 0.01
301 9 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (297 bp):
ACCTATCCCACTGATGACCAGGGAGATAGGACTTAAATCTTTAACCTATTCCACTGCTGACCAGG
GAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAA
ATCTGCTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTACTCCATGACTGCTTT
GGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATCT
ACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
Found at i:39123549 original size:44 final size:44
Alignment explanation
Indices: 39123501--39124469 Score: 184
Period size: 44 Copynumber: 22.3 Consensus size: 44
39123491 TACTATTGCT
*
39123501 TAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* *
39123545 TAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * * * ** * * *
39123589 CAGGAAGACAAG-GCTTGT-GGCTTAAATCTGCTTCC-CTACT-ACC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCT-ATTCCACTACTGA-C
* * *** * * * * *
39123632 TAGGAAAGATAAGATTTGCCGTCTTCGATCTACTCTACTATTG-C
1 TAGG-GAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
** * * * *
39123676 TTAGGGAGATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-AC
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* ** * * *
39123719 TCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCACTATTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** * *
39123764 GAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTGCTGGC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
39123808 CATGGAGATAAGA-CTTATAATCTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCTATTCCACTACTGAC
* * ** * * *
39123852 TAGTGAGATAAG-GCTAGT-GGCTTAAATCTACTT-CTCTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTA-TTCCACTACTGA-C
* *** * * ** *
39123895 TTGGGAAGATAAGAATC-GCCGTCTTCGATCTGCTCTACTACTG-C
1 TAGGG-AGATAAG-ATCTGTAATCTTCAACCTATTCCACTACTGAC
* * **
39123939 TTAGGGAGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTAT-TCCACTACTGAC
* ** *
39123983 TAAGGGAGATAGGAT-TCACAATCTTCAACCTATTCCACTGCTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
39124028 TAGGGAGATAGGA-CT-TACAATCTTCAACCTATTTCACTACCGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * ** * * *
39124072 CAGGGAGATAAG-GCTAGT-GGCTTAAATCTGCTTCC-CTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCT-ATTCCACTACTGA-C
* * * ** ** ** * *
39124115 TCGGGAAGATAAGAT-T-CACCGTCTTTGATTTGCTGCACTGCTG-C
1 TAGGG-AGATAAGATCTGTA--ATCTTCAACCTATTCCACTACTGAC
* *
39124159 TTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTA-TTCCACTACTGAC
** * * *
39124203 TCAGGGAGAT-AGAAT-TCACAATCTTCAGCCTATTCTACTGCTGAC
1 T-AGGGAGATAAG-ATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** *
39124248 CAGGGAGATAGGAT-TCACAATCTTCAACCTATTCCACTGCTGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
39124292 CAGGGAGAT-AG----G--A--TTC-ATCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* * **
39124326 CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTGTTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * ** * *
39124370 CAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCGCTGCTGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
39124414 CAGGGAGATAGGA-CT-TACAATCTTCAACCTGTTCCACTACTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
*
39124458 CAGGGAGATAAG
1 TAGGGAGATAAG
39124470 GCTAGTGGCT
Statistics
Matches: 686, Mismatches: 162, Indels: 154
0.68 0.16 0.15
Matches are distributed among these distances:
34 24 0.03
35 4 0.01
37 1 0.00
41 1 0.00
42 6 0.01
43 96 0.14
44 491 0.72
45 59 0.09
46 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
Found at i:39123670 original size:176 final size:176
Alignment explanation
Indices: 39123351--39123758 Score: 579
Period size: 176 Copynumber: 2.3 Consensus size: 176
39123341 GATAGGATTC
* * * * * *
39123351 ACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
* * * *
39123416 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
* *
39123481 CGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTTCA
131 CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
*
39123527 ACCTATTCCACTACTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
* * * *
39123592 GAAGACAAGGCTTGTGGCTTAAATCTGCTTCCCTACTACCTAGGAAAGATAAGATTTGCCGTCTT
66 GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
* *
39123657 CGATCTACTCTACTATTGCTTAGGGAGATAACTTTTGTAATTTTCA
131 CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
* * *
39123703 ACCTA-TCCAGTGCT-ACTCAGGGAGATAGGA-TTCACAATTTTCAACCTATTTCACTA
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTA
39123759 TTGACGAGGG
Statistics
Matches: 207, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
174 5 0.02
175 40 0.19
176 162 0.78
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (176 bp):
ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAG
GAAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAAGATAAGAATCGCCGTCTT
CGATCTACTCTACTATTGCTTAGGGAGATAACATCTGTAATTTTCA
Found at i:39123742 original size:43 final size:44
Alignment explanation
Indices: 39123695--39124467 Score: 299
Period size: 44 Copynumber: 17.8 Consensus size: 44
39123685 TAACTTTTGT
* *
39123695 AATTTTCAACCTA-TCCAGTGCT-ACTCAGGGAGATAGGATTCAC
1 AATTTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCAC
* ** *
39123738 AATTTTCAACCTATTTCACTATTGACGAGGGAGATAGGACTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * * *
39123782 AATCTTCAACCTATTCCACTGCTGGCCATGGAGATAAGACTTAT
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * *
39123826 AATCTTCAACCTATTCCACTACTGACTAGTGAGATAAGG-CT-AG
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTCAC
**** * * * * * * * *
39123869 TGGCTTAAATCTACTT-CTCTACT-ACCTTGGGAAGATAAGAATCGC
1 AATTTTCAACCTA-TTCCACTGCTGACC-AGGG-AGATAGGACTCAC
** * * * ** * * * * * **
39123914 CGTCTTCGATCTGCTCTACTACTG-CTTAGGGAGAAAAGA-TCTGT
1 AATTTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTC-AC
* * *
39123958 AATTTTCAACCT-TCTCCACTGTTG-CTAAGGGAGATAGGATTCAC
1 AATTTTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGGACTCAC
* * *
39124002 AATCTTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * * *
39124046 AATCTTCAACCTATTTCACTACCGACCAGGGAGATAAGG-CT-AG
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTCAC
**** * * * * * * *
39124089 TGGCTTAAATCTGCTTCC-CTACT-ACCTCGGGAAGATAAGATTCAC
1 AATTTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCAC
** * ** ** * * * **
39124134 CGTCTTT-GATTTGCTGCACTGCTG-CTTAGGGAGATAAGA-TCTGT
1 AAT-TTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTC-AC
* * * *
39124178 AATTTTCAACCTACTT-CATTACTG-CTCAGGGAGATAGAATTCAC
1 AATTTTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGGACTCAC
* * * *
39124222 AATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
*
39124266 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG------
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * * *
39124304 -A--TTC-ATCTATTCCACTACTAACCAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* *
39124344 AATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * *
39124388 AATCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGACTTAC
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
* * *
39124432 AATCTTCAACCTGTTCCACTACTGACCAGGGAGATA
1 AATTTTCAACCTATTCCACTGCTGACCAGGGAGATA
39124468 AGGCTAGTGG
Statistics
Matches: 555, Mismatches: 133, Indels: 83
0.72 0.17 0.11
Matches are distributed among these distances:
34 27 0.05
35 3 0.01
37 1 0.00
41 1 0.00
42 5 0.01
43 61 0.11
44 410 0.74
45 45 0.08
46 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
AATTTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAC
Found at i:39124004 original size:220 final size:220
Alignment explanation
Indices: 39123351--39124301 Score: 982
Period size: 220 Copynumber: 4.3 Consensus size: 220
39123341 GATAGGATTC
* * * *
39123351 ACCTATCCCACTGCTGACCAGGGAGATTGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
39123416 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
*
39123481 CGATCTGCTCTACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
131 CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
39123546 AGGGAGATAGGACTT-ACAATCTTCA
196 AGGGAGATAGGA-TTCACAATCTTCA
* * * * **** * * *
39123571 ACCTATTCCACTACTAACCAGGAAGACAAGG-CTT-GTGGCTTAAATCTGCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTGACCAGGGAGA-TAGGACTTACAATCTTCAACCT-ATTCCACTACTGACC
* ** * * * ** * *** *
39123632 TAGGAAAGATAAGATTTGCCGTCTTCGATCTAC-T--CTACTATTGCTTAGGG-AGATAACTTTT
64 -AGG-GAGATAAGGCTAG-TGGCTTAAATCTACTTCCCTACTA--CCTT-GGGAAGATAAGAATC
*** * * * * * * * * * * ** *
39123693 GTAATTTTCAACCT-ATCCAGTGCTACTCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCA
123 GCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCT-GTAATTTTCAACCTATTCCA
* * *
39123756 CTATTGACGAGGGAGATAGGACTCACAATCTTCA
187 CTACTGACTAGGGAGATAGGATTCACAATCTTCA
* * * * *
39123790 ACCTATTCCACTGCTGGCCATGGAGATAAGACTTATAATCTTCAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *
39123855 TGAGATAAGGCTAGTGGCTTAAATCTACTTCTCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
* **
39123920 CGATCTGCTCTACTACTGCTTAGGGAGAAAAGATCTGTAATTTTCAACCT-TCTCCACTGTTG-C
131 CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT-TCCACTACTGAC
39123983 TAAGGGAGATAGGATTCACAATCTTCA
195 T-AGGGAGATAGGATTCACAATCTTCA
* * *
39124010 ACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTACCGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* * * *
39124075 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
* * * *
39124140 TGATTTGCTGC-ACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-
131 CGATCTGCT-CTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA-TTCCACTACTGA
*
39124202 CTCAGGGAGATAGAATTCACAATCTTCA
194 CT-AGGGAGATAGGATTCACAATCTTCA
* * *
39124230 GCCTATTCTACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACTGACCA
39124294 GGGAGATA
65 GGGAGATA
39124302 GGATTCATCT
Statistics
Matches: 581, Mismatches: 124, Indels: 52
0.77 0.16 0.07
Matches are distributed among these distances:
218 26 0.04
219 140 0.24
220 388 0.67
221 26 0.04
222 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (220 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
CGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACT
AGGGAGATAGGATTCACAATCTTCA
Found at i:39124335 original size:78 final size:81
Alignment explanation
Indices: 39124225--39124467 Score: 305
Period size: 78 Copynumber: 3.0 Consensus size: 81
39124215 AATTCACAAT
* *
39124225 CTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCT
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCT
39124289 GACCAGGGAGATAGG-A
65 GACCAGGGAGATAGGAA
* * * *
39124305 -TTC-ATCTATTCCACTACTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
39124368 ACCAGGGAGATAGGACTCACAA
66 ACCAGGGAGATAGG------AA
* * *
39124390 TCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCT
39124455 GACCAGGGAGATA
65 GACCAGGGAGATA
39124468 AGGCTAGTGG
Statistics
Matches: 139, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
78 65 0.47
79 5 0.04
85 1 0.01
87 3 0.02
88 65 0.47
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (81 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
ACCAGGGAGATAGGAA
Found at i:39124421 original size:122 final size:122
Alignment explanation
Indices: 39124204--39124426 Score: 376
Period size: 122 Copynumber: 1.8 Consensus size: 122
39124194 CATTACTGCT
* * *
39124204 CAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAAT
1 CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
39124269 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
66 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
* *
39124326 CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
1 CAGGGAGATA-GAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAA
*
39124390 TCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGA
65 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
39124427 CTTACAATCT
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
122 90 0.96
123 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (122 bp):
CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
Found at i:39125664 original size:15 final size:15
Alignment explanation
Indices: 39125644--39125672 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
39125634 ATACCTCACA
39125644 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
39125659 CACCGTGTTATCAA
1 CACCGTGTTATCAA
39125673 GCAACAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:39134350 original size:44 final size:44
Alignment explanation
Indices: 39134287--39134373 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
39134277 ATTGGAATTT
** * *
39134287 TAGCTTCAATCTGACCCACTACAACTTCAAGGATATAGGATTCG
1 TAGCTTCAATCCAACCCACTACAACTTCAAGGAGATAAGATTCG
* *
39134331 TAGCTTCAATCCAATCCACTACAACTTCAGGGAGATAAGATTC
1 TAGCTTCAATCCAACCCACTACAACTTCAAGGAGATAAGATTC
39134374 ACTATGGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (44 bp):
TAGCTTCAATCCAACCCACTACAACTTCAAGGAGATAAGATTCG
Found at i:39134537 original size:44 final size:44
Alignment explanation
Indices: 39134427--39134750 Score: 147
Period size: 44 Copynumber: 7.1 Consensus size: 44
39134417 GGATTTGTAG
* ** * *
39134427 TTGTAGCTTCATTCCAAC-CCACTGCAACTTCAGGGGGTATAGAAA
1 TTGTAGCTTCA-TCCAACTCCACTGCAACTTTA-GGGACATAGGAT
*
39134472 TTGTAGCTTCAATCCGA-TCCACTGCAACTTTAGGGACATAGGAT
1 TTGTAGCTTC-ATCCAACTCCACTGCAACTTTAGGGACATAGGAT
** * *
39134516 TTGTAGCTTCATCTTACTCCACTGCAACTTTAGGGAGATAAGATTCGT
1 TTGTAGCTTCATCCAACTCCACTGCAACTTTAGGGACATAGGA----T
* * * * * *
39134564 TATGGTAGATTCGACCCGAC-CCACTACAACTTCAAGGG-TATAGGATTTGT
1 T-T-GTAGCTTC-ATCCAACTCCACTGCAACTT-TAGGGACATAGGA----T
* ** *
39134614 AGTTGTAGCTTCATTCCAAC-CCACTGCAACTTCAGGGGTATAGGAA
1 --TTGTAGCTTCA-TCCAACTCCACTGCAACTTTAGGGACATAGGAT
** * ** *
39134660 TTGTAGCTTCAATCTGA-TCCACTGTAACTTTAGGGGTATATGAT
1 TTGTAGCTTC-ATCCAACTCCACTGCAACTTTAGGGACATAGGAT
*** * * *
39134704 TTGTAGCTTCATCCTGGTCCACTACAACTTTAGGGAGATAAGAT
1 TTGTAGCTTCATCCAACTCCACTGCAACTTTAGGGACATAGGAT
39134748 TTG
1 TTG
39134751 CTATGGTAAC
Statistics
Matches: 222, Mismatches: 39, Indels: 37
0.74 0.13 0.12
Matches are distributed among these distances:
43 7 0.03
44 112 0.50
45 28 0.13
46 1 0.00
48 2 0.01
49 6 0.03
50 56 0.25
51 9 0.04
52 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
TTGTAGCTTCATCCAACTCCACTGCAACTTTAGGGACATAGGAT
Found at i:39134654 original size:188 final size:188
Alignment explanation
Indices: 39134282--39134802 Score: 706
Period size: 188 Copynumber: 2.8 Consensus size: 188
39134272 GGGTTATTGG
* * * * * * *
39134282 AATTTTAGCTTCAATCTGACCCACTACAACTTCAAGGATATAGGATTCGTAGCTTCAATCCAATC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTC-ATCTAATC
* * * * * * *
39134347 CACTACAACTTCAGGGAGATAAGATTCACTATGGAAGATTTAATCCGACCCATTGCAA-TTTAGG
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAG
39134411 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATAGA
130 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATAGA
* * *
39134470 AATTGTAGCTTCAATCCGATCCACTGCAACTTTAGGGACATAGGATTTGTAGCTTCATCTTACTC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCATC-TAATC
* * ** *
39134535 CACTGCAACTTTAGGGAGATAAGATTCGTTATGGTAGATTCGACCCGACCCACTACAACTTCAAG
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAG
*
39134600 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCA-GGGGTATAGG
130 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATAGA
* * * **
39134658 AATTGTAGCTTCAATCTGATCCACTGTAACTTTAGGGGTATATGATTTGTAGCTTCATCCTGGTC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCAT-CTAATC
* *
39134723 CACTACAACTTTAGGGAGATAAGATTTGCTATGGTA-ACTTTAATACGACCCACTACAACTTCAA
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGA-TTTAATCCGACCCACTACAACTTCAA
*
39134787 GGGTATAGAATTTGTA
129 GGGTATAGGATTTGTA
39134803 CTGTTTCATT
Statistics
Matches: 291, Mismatches: 38, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
187 4 0.01
188 234 0.80
189 53 0.18
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (188 bp):
AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCATCTAATCC
ACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAGG
GTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATAGA
Found at i:39134682 original size:94 final size:93
Alignment explanation
Indices: 39134388--39134709 Score: 291
Period size: 94 Copynumber: 3.4 Consensus size: 93
39134378 TGGAAGATTT
* * * *
39134388 AATCCGACCCATTGCAATTTAGGGGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCA
1 AATCCGATCCACTGCAACTTAAGGGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCA
*
39134453 ACTTCAGGGGGTATAGAAATTGTAGCTTC
66 ACTTCA-GGGGTATAGGAATTGTAGCTTC
* * **
39134482 AATCCGATCCACTGCAACTTTAGGGACATAGGA----T--TTGTAGCTTCA-TCTTACTCCACTG
1 AATCCGATCCACTGCAACTTAAGGG-TATAGGATTTGTAGTTGTAGCTTCATTCCAAC-CCACTG
* * * *
39134540 CAACTTTAGGGAG-ATAAGATTCGTTATGGTAGATTC
64 CAACTTCAGGG-GTAT-AG----G-AATTGTAGCTTC
* * * *
39134576 GACCCGACCCACTACAACTTCAAGGGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGC
1 AATCCGATCCACTGCAACTT-AAGGGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGC
39134641 AACTTCAGGGGTATAGGAATTGTAGCTTC
65 AACTTCAGGGGTATAGGAATTGTAGCTTC
* * * *
39134670 AATCTGATCCACTGTAACTTTAGGGGTATATGATTTGTAG
1 AATCCGATCCACTGCAAC-TTAAGGGTATAGGATTTGTAG
39134710 CTTCATCCTG
Statistics
Matches: 176, Mismatches: 33, Indels: 38
0.71 0.13 0.15
Matches are distributed among these distances:
88 9 0.05
89 27 0.15
91 1 0.01
94 89 0.51
95 13 0.07
98 1 0.01
99 3 0.02
100 29 0.16
101 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (93 bp):
AATCCGATCCACTGCAACTTAAGGGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCA
ACTTCAGGGGTATAGGAATTGTAGCTTC
Found at i:39138252 original size:43 final size:43
Alignment explanation
Indices: 39138152--39138284 Score: 169
Period size: 43 Copynumber: 3.1 Consensus size: 43
39138142 GTGGGAAAAG
* * * * *
39138152 CGCCGCTAAAGACCATGATCTTTAGCGGCGC-ATTCCTACAAA
1 CGCCACTAAAGACCATGACCTTTAGCGGCACTTTTCCCACAAA
**
39138194 CGCCGTTAAAGACCATGACCTTTAGCGGCACTTTTCCCACAAA
1 CGCCACTAAAGACCATGACCTTTAGCGGCACTTTTCCCACAAA
* * *
39138237 CGCCACTAAATACCATGACCTTTAGCGGCACTTCTACCACAAA
1 CGCCACTAAAGACCATGACCTTTAGCGGCACTTTTCCCACAAA
39138280 CGCCA
1 CGCCA
39138285 TTATAGGTCA
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 28 0.35
43 52 0.65
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (43 bp):
CGCCACTAAAGACCATGACCTTTAGCGGCACTTTTCCCACAAA
Found at i:39142663 original size:107 final size:107
Alignment explanation
Indices: 39142433--39142755 Score: 461
Period size: 107 Copynumber: 3.0 Consensus size: 107
39142423 GCAAAAATTT
* * *
39142433 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCTAAAAAAATTTTATTTT-GTTTTTTATAA
1 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATCCTAAAAAATTTTTATTTTATTTTTTTATAA
** * *
39142497 ATTGATTTAAATTTTGCAGCGTTTTTTGTAAAAACGCCGCTA
66 ATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTA
* * *
39142539 TTTCATTTTGAACAAAATGACGTCGTTTTGCTATCCTAAAAATTTTTTATTTTATTTTTTTATAT
1 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATCCTAAAAAATTTTTATTTTATTTTTTTATAA
* *
39142604 ATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAACGCCGCAA
66 ATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTA
* * * * *
39142646 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTATATTTTATTTTTTTATAA
1 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATCCTAAAAAATTTTTATTTTATTTTTTTATAA
* *
39142711 ATTGATTTATTTTTTGTGGCG-TTTTTAAAAAAACGCCGCTA
66 ATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTA
39142752 TTTC
1 TTTC
39142756 TTACCTTTAG
Statistics
Matches: 192, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
106 71 0.37
107 121 0.63
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (107 bp):
TTTCATTTTGAACAAAATGACGCCGTTTTGCTATCCTAAAAAATTTTTATTTTATTTTTTTATAA
ATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTA
Found at i:39142923 original size:258 final size:258
Alignment explanation
Indices: 39142538--39143275 Score: 1196
Period size: 257 Copynumber: 2.8 Consensus size: 258
39142528 AAACGCCGCT
* *
39142538 ATTTCATTTTGAACAAAATGACGTCGTTTTGCTATCCTAAAAATTTTTTATTTTATTTTTTTATA
1 ATTTTATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATA
39142603 TATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATGACA
66 TATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATGACA
* *
39142668 CCGTTTTGCTATGCTAAAAAATTTATATTTTATTTTTTTATAAATTGATTTATTTTTTGTGGCG-
131 CCGTTTTGCTATGCT-AAAAATTTTTATTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCGT
39142732 TTTTTAAAAAAACGCCGCTATTTCTTACCTTTAGCGGCGGTTTTT-TGAGAAACGCCGCAAAAAA
195 TTTTTAAAAAAACGCCGCTATTTCTTACCTTTAGCGGC-GTTTTTATGAGAAACGCCGC-AAAAA
39142796 A
258 A
*
39142797 ATTTTATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT-TA
1 ATTTTATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATA
* *
39142861 TATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTATTTCATTTTCAGCAAAATGACA
66 TATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATGACA
39142926 CCGTTTTGCTATGCTAAAAATTTTTATTTTA-TTTTTTATAAATTGATTTATTTTTTGCGGCGTT
131 CCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCGTT
** * * *
39142990 TTTTAAAAAAATACCGGTATTGCTTACCTTTAGCGGCGTTTTTATGAGAAACGTCGCAAAAAA
196 TTTTAAAAAAACGCCGCTATTTCTTACCTTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAA
* *
39143053 TTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATA
1 ATTTT-ATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTT-TA
*
39143118 TATATTGATTTGTTTTTTACGGCGTTTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATG
64 TATATTGATTTGTTTTTTGCGGCG-TTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATG
* * * *
39143183 ACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATATATTGATTTGTTGTTTACGG
128 ACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTT-TATAAATTGATTTATTTTTTGCGG
*
39143248 CGTTTTTTTATAAAAACGCCGCTATTTC
192 CG-TTTTTTAAAAAAACGCCGCTATTTC
39143276 ATTTTCAGCA
Statistics
Matches: 443, Mismatches: 27, Indels: 14
0.92 0.06 0.03
Matches are distributed among these distances:
256 46 0.10
257 115 0.26
258 81 0.18
259 81 0.18
260 73 0.16
261 5 0.01
262 22 0.05
263 20 0.05
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (258 bp):
ATTTTATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATA
TATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAACGCCGCAATTTCATTTTCAGCAAAATGACA
CCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCGTT
TTTTAAAAAAACGCCGCTATTTCTTACCTTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAA
Found at i:39142987 original size:105 final size:106
Alignment explanation
Indices: 39142810--39143000 Score: 330
Period size: 105 Copynumber: 1.8 Consensus size: 106
39142800 TTATTTTGAA
** * *
39142810 CAAAATGACGTCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTTATATTGATTTATTTT
1 CAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTATAAATTGATTTATTTT
*
39142875 TTGCGGCGTTTTTTATAAAAACGCCGCTATTTCATTTTCAG
66 TTGCGGCGTTTTTTAAAAAAACGCCGCTATTTCATTTTCAG
39142916 CAAAATGACACCGTTTTGCTATGCT-AAAAATTTTTATTTTATTTTTTATAAATTGATTTATTTT
1 CAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTATAAATTGATTTATTTT
39142980 TTGCGGCGTTTTTTAAAAAAA
66 TTGCGGCGTTTTTTAAAAAAA
39143001 TACCGGTATT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
105 57 0.71
106 23 0.29
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (106 bp):
CAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTATAAATTGATTTATTTT
TTGCGGCGTTTTTTAAAAAAACGCCGCTATTTCATTTTCAG
Found at i:39143254 original size:108 final size:108
Alignment explanation
Indices: 39143055--39143479 Score: 719
Period size: 108 Copynumber: 3.9 Consensus size: 108
39143045 GCAAAAAATT
* * *
39143055 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATATA
1 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAA-TTTTTATTTTATTTTTTATATA
*
39143120 TATTGATTTGTTTTTTACGGCGTTTTTTTATAAAAACGCCGCAA
65 TATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCAA
39143164 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
1 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
*
39143229 ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCTA
66 ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCAA
*
39143272 TTTCATTTTCAGCAAAATGACACCGGTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
1 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
39143337 ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCAA
66 ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCAA
* *
39143380 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTATTTTATTTTTT-TATAA
1 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
* * * *
39143444 ATTGATTTATTTTTTGCGGCG-TTTTTTAAAAAAACG
66 ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACG
39143480 ACACCGCTAT
Statistics
Matches: 302, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
106 14 0.05
107 22 0.07
108 227 0.75
109 39 0.13
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (108 bp):
TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATATAT
ATTGATTTGTTGTTTACGGCGTTTTTTTATAAAAACGCCGCAA
Found at i:39143589 original size:6 final size:6
Alignment explanation
Indices: 39143578--39143602 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
39143568 TGCTAAAATT
39143578 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
39143603 AAATTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:39144206 original size:14 final size:14
Alignment explanation
Indices: 39144187--39144220 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
39144177 AACCTTAAAT
39144187 CCCTAAC-TCTTAAC
1 CCCTAACATC-TAAC
39144201 CCCTAACATCTAAC
1 CCCTAACATCTAAC
39144215 CCCTAA
1 CCCTAA
39144221 ACCCCTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTAACATCTAAC
Found at i:39144230 original size:15 final size:15
Alignment explanation
Indices: 39144197--39144238 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
39144187 CCCTAACTCT
**
39144197 TAACCCCT-AACATC
1 TAACCCCTAAACCCC
39144211 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
*
39144226 TAACCCTTAAACC
1 TAACCCCTAAACC
39144239 TTAAATCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:39144271 original size:14 final size:15
Alignment explanation
Indices: 39144254--39144286 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
39144244 TCCCAACTCT
39144254 TAAAT-CATAATCCC
1 TAAATCCATAATCCC
*
39144268 TAAATCCATACTCCC
1 TAAATCCATAATCCC
39144283 TAAA
1 TAAA
39144287 CCTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:39144490 original size:15 final size:15
Alignment explanation
Indices: 39144472--39144522 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
39144462 CCTAGCATGT
39144472 CTAACCCTTAAATCC
1 CTAACCCTTAAATCC
*
39144487 CTAACCCTCT-AACCC
1 CTAACCCT-TAAATCC
*
39144502 CTAAACCTTAAATCC
1 CTAACCCTTAAATCC
39144517 C-AACCC
1 CTAACCC
39144523 CTAATCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 5 0.17
15 24 0.80
16 1 0.03
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (15 bp):
CTAACCCTTAAATCC
Found at i:39145078 original size:114 final size:113
Alignment explanation
Indices: 39144852--39145387 Score: 673
Period size: 114 Copynumber: 4.7 Consensus size: 113
39144842 AGCATTTTTG
** * *
39144852 GCCGCTAAATCCCTAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG-GTTTTTTGCGGCGCTTTC
*
39144917 TCAAAAACACCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
65 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * *
39144966 GCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTCAGGTTTTTTGCGGCGCTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
39145031 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAC
66 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTT-AAAAAC
* * * * * * * * * *
39145080 GCTGCTAAATCCTCGAAAGCTAACAAAATGGTGTCGTTGGGTTTGGGATTTCTTGCGGC-ATTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGGCGCTTTC
* * * *
39145144 TGAGGAAGCGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTAC-TAAAAAC
65 TCA-AAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-CTTAAAAAC
*
39145194 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAAGTTTTTTTGCGGCGCTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTT-AGGTTTTTTGCGGCGC-TTT
* * * **
39145259 ATCAAAAACGCCGCTAAAGCCTTGAGCATTAGTGGTTCTTTCTTAAAAAC
64 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* **** * *
39145309 GCCACTAAA-CCCCGAAAGCTTGGGAAATGGTGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
39145373 CAAAAACGCCGCTAA
66 CAAAAACGCCGCTAA
39145388 TGCTTATTTT
Statistics
Matches: 364, Mismatches: 50, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
112 19 0.05
113 74 0.20
114 174 0.48
115 91 0.25
116 6 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (113 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
Found at i:39150982 original size:16 final size:16
Alignment explanation
Indices: 39150961--39150991 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39150951 TCGGGCTATA
*
39150961 ACTATGCATTTCAAAC
1 ACTATGCATGTCAAAC
39150977 ACTATGCATGTCAAA
1 ACTATGCATGTCAAA
39150992 AATAGCATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (16 bp):
ACTATGCATGTCAAAC
Found at i:39166585 original size:19 final size:19
Alignment explanation
Indices: 39166546--39166585 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
39166536 AATAGGGATC
*
39166546 AATTTAAATAAAAATTTAA
1 AATTTAAATAAAAATTAAA
39166565 AATTTAAA-ATAAAATTAAA
1 AATTTAAATA-AAAATTAAA
39166584 AA
1 AA
39166586 CATGGGACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTAAATAAAAATTAAA
Found at i:39179381 original size:42 final size:42
Alignment explanation
Indices: 39179334--39179437 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
39179324 TATCGGGATG
* * *
39179334 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
39179376 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
39179418 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
39179438 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:39179451 original size:42 final size:42
Alignment explanation
Indices: 39179334--39179459 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
39179324 TATCGGGATG
* * ** *
39179334 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
39179376 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
39179418 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
39179459 T
1 T
39179460 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:39180372 original size:21 final size:21
Alignment explanation
Indices: 39180346--39180402 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
39180336 ATGGTATAAG
39180346 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
39180367 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
39180391 GTGGCATGAATT
1 GTTG-ATGAATT
39180403 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:39186692 original size:29 final size:28
Alignment explanation
Indices: 39186656--39186733 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
39186646 TCATGAGATT
39186656 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
39186686 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
39186713 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
39186734 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:39186951 original size:174 final size:174
Alignment explanation
Indices: 39186686--39187013 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
39186676 AAATTGTACA
*
39186686 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
39186751 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
39186816 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
39186860 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
39186925 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
39186990 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
39187014 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:39190781 original size:20 final size:20
Alignment explanation
Indices: 39190756--39190817 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
39190746 TAAATGTGTT
39190756 CAGGGGCACATATGTGCAAA
1 CAGGGGCACATATGTGCAAA
* ** * *
39190776 CAGGGGTACCGAAGTACAAA
1 CAGGGGCACATATGTGCAAA
* *
39190796 CAGGGGCACGTATGTGGAAA
1 CAGGGGCACATATGTGCAAA
39190816 CA
1 CA
39190818 TGTAATAATT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.32, T:0.13
Consensus pattern (20 bp):
CAGGGGCACATATGTGCAAA
Found at i:39192704 original size:37 final size:37
Alignment explanation
Indices: 39192663--39192831 Score: 203
Period size: 37 Copynumber: 4.6 Consensus size: 37
39192653 CAAGTTACAC
* *** *
39192663 TCAGTATAACAGTAGGATTTGCTCGATTGAAAGTCCT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* *
39192700 TCAGTATAACAGTAACATTTGCTCGGTTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * * *
39192737 ACAGTATAATAGTAAGATTTTCTCGATTGAGCTTCTT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * *
39192774 TCAGTATAACGGTACGATTTCCTCGATTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
*
39192811 TCAGTATAACGGTAAGATTTG
1 TCAGTATAACAGTAAGATTTG
39192832 GTTCGATATA
Statistics
Matches: 111, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 111 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (37 bp):
TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
Found at i:39195899 original size:50 final size:50
Alignment explanation
Indices: 39195820--39196014 Score: 302
Period size: 50 Copynumber: 3.9 Consensus size: 50
39195810 CATTTGGGTA
39195820 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * *
39195870 AAGAGGTCCCATGTAAGTCCATGTTTGGGACATGGCCTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
39195920 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * * *
39195970 GAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 AAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACC
39196015 AATATGAGAA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
50 130 0.98
51 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:39196519 original size:50 final size:50
Alignment explanation
Indices: 39196444--39196694 Score: 430
Period size: 50 Copynumber: 5.0 Consensus size: 50
39196434 CAAANAAACA
39196444 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
* * *
39196494 TCCCATGTAAGTCCATGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
39196544 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
* * *
39196594 TCCCATGTAAGTCCATGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
* *
39196644 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
39196694 T
1 T
39196695 NGAAACTTAA
Statistics
Matches: 187, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 187 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGG
Found at i:39196617 original size:100 final size:100
Alignment explanation
Indices: 39196444--39196694 Score: 484
Period size: 100 Copynumber: 2.5 Consensus size: 100
39196434 CAAANAAACA
39196444 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGTCCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGTCCA
39196509 TGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
66 TGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
39196544 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGTCCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGTCCA
39196609 TGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
66 TGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
* *
39196644 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAGAGATGAGAGGT
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGT
39196695 NGAAACTTAA
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 149 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (100 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGTCCA
TGTTTGGGACATGGCCTTGGCACCGAGATAAGAGG
Found at i:39197374 original size:16 final size:17
Alignment explanation
Indices: 39197355--39197387 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
39197345 GTTATAATTT
39197355 ATATGTAT-AGTTTTAA
1 ATATGTATGAGTTTTAA
*
39197371 ATATTTATGAGTTTTAA
1 ATATGTATGAGTTTTAA
39197388 TTTATATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
ATATGTATGAGTTTTAA
Found at i:39199808 original size:16 final size:17
Alignment explanation
Indices: 39199780--39199822 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
39199770 ATATGTGTAT
*
39199780 ATATATTTTTT-TATGA
1 ATATTTTTTTTATATGA
39199796 ATATTTTTCTTTATATGA
1 ATATTTTT-TTTATATGA
39199814 ATATTTTTT
1 ATATTTTTT
39199823 ATATTTATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 7 0.29
17 4 0.17
18 13 0.54
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (17 bp):
ATATTTTTTTTATATGA
Found at i:39200083 original size:21 final size:20
Alignment explanation
Indices: 39200043--39200085 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
39200033 TTATGTACCT
*
39200043 TTTATTCTTTATTTTTTTTA
1 TTTATTCTTTATTTTGTTTA
39200063 TTTAGTTCTTTCA-TTTGTTTA
1 TTTA-TTCTTT-ATTTTGTTTA
39200084 TT
1 TT
39200086 AATTTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTCTTTATTTTGTTTA
Found at i:39200222 original size:15 final size:15
Alignment explanation
Indices: 39200202--39200236 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
39200192 TTTCTATGCC
39200202 ATTGTTATATTTATT
1 ATTGTTATATTTATT
*
39200217 ATTGTTGTATTTATT
1 ATTGTTATATTTATT
39200232 ATTGT
1 ATTGT
39200237 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
ATTGTTATATTTATT
Found at i:39212231 original size:44 final size:43
Alignment explanation
Indices: 39212102--39212950 Score: 342
Period size: 44 Copynumber: 19.5 Consensus size: 43
39212092 CCAATAATCC
* * **
39212102 TATCTCCCTGAAGTTGCAGTGGAGC-GAATTAA-AACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGC-AAG-TCT
* * * * * *
39212146 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* *
39212186 TATCTCCCTAAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * *
39212230 TATC-CTCCTGAAGTTGTAGT-GAGGCAAACTGAAGATGGAAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * *
39212275 TATCTCCCTGAAGTTGCAGTAGAGCAGA-TTA-AAGCCGATAATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * **
39212319 TATCTTCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * * *
39212363 TATC-CCTCTGAAGTTACAG-AGAGTAGA-T-CGCATCTAGTCT
1 TATCTCC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
39212403 TATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
39212447 TATC-CTCCTGAAGTTGCAAT-GAGGCAGACTAAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * * *
39212492 TATCTCCCTGAAGTTGCAGTGGAGTAGA-TTA-AAGCCAATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * *
39212536 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * ** * * * *
39212580 TATCTCTCTGAAGTTACAG-AAAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* *
39212620 TATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
39212664 TATC-CTCCTGAAGTTGCAGT-GAGGCCGACTGAAGATGGTAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * *
39212709 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * **
39212753 TATCTCCCTGAAGTTGCAGTGGAGC-GAAATAA-AACCGTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAG-ACTAAGAAGC-AAG-TCT
* * * * * * * *
39212797 TATCTCTCTATAAAGTTGCAG-AGAGTAGA-T-CGCATCTAGTCT
1 TATCTC-C-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
39212839 TATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * *
39212883 TATC-CTCTTAAAGTTACAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* *
39212928 TATCTCCCTAAAGTTACAGTGGA
1 TATCTCCCTGAAGTTGCAGTGGA
39212951 AAGATTAAAG
Statistics
Matches: 612, Mismatches: 127, Indels: 130
0.70 0.15 0.15
Matches are distributed among these distances:
40 65 0.11
41 38 0.06
42 26 0.04
43 42 0.07
44 282 0.46
45 136 0.22
46 23 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:39212484 original size:217 final size:217
Alignment explanation
Indices: 39212095--39213086 Score: 1581
Period size: 217 Copynumber: 4.6 Consensus size: 217
39212085 TCGGTGGCCA
*
39212095 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
39212160 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
39212225 AGTCTTATCCTCCTGAAGTTGTAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
39212290 GCAGTAGAGCAGATTAAAGCCG
196 GCAGTGGAGCAGATTAAAGCCG
* * *
39212312 ATAATCATATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCCCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * *
39212377 TACAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
39212442 AGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTAAAGATGGCAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
39212507 GCAGTGGAGTAGATTAAAGCCA
196 GCAGTGGAGCAGATTAAAGCCG
*
39212529 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
39212594 TACAGAAAGCAGATCGCATCTAGTCTTATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
39212659 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCCGACTGAAGATGGTAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
39212724 GCAGTGGAGCAGATTAAAGCCG
196 GCAGTGGAGCAGATTAAAGCCG
* * * *
39212746 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAAATAAAACCGTGGATCTTATCTCTCTATAAA
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTC--TGAA
* *
39212811 GTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAG
64 GTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG
* * * *
39212876 CAAGTCTTATCCTCTTAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAG
129 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
* *
39212941 TTACAGTGGA-AAGATTAAAGCCG
194 TTGCAGTGGAGCAGATTAAAGCCG
* * * * *
39212964 ATAATCCTATCTCCCTGAAGTTGTAGTGTAACGGATTAAAATCTTGGATCTTATCTCTATGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
*
39213029 TGCAGAGAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
39213087 CTCAAGCTGA
Statistics
Matches: 710, Mismatches: 63, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
216 60 0.08
217 457 0.64
218 63 0.09
219 130 0.18
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCG
Found at i:39212944 original size:45 final size:44
Alignment explanation
Indices: 39212836--39212951 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 44
39212826 TCGCATCTAG
* * *
39212836 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAGCAAG
1 TCTTATCTCCCTAAAGTTACAGTGGAACAGACTAAGTAAGCAAA
* * *
39212880 TCTTATC-CTCTTAAAGTTACAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTAAAGTTACAGTGGA-ACAGACT-AAGTA-AGCAAA
39212925 TCTTATCTCCCTAAAGTTACAGTGGAA
1 TCTTATCTCCCTAAAGTTACAGTGGAA
39212952 AGATTAAAGC
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
43 3 0.05
44 25 0.43
45 27 0.47
46 3 0.05
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTACAGTGGAACAGACTAAGTAAGCAAA
Found at i:39214469 original size:16 final size:15
Alignment explanation
Indices: 39214448--39214536 Score: 74
Period size: 16 Copynumber: 5.7 Consensus size: 15
39214438 TAATATAAAT
39214448 TTTTTTTATATAATTA
1 TTTTTTTATATAA-TA
*
39214464 TTTTTTTATCT-ATA
1 TTTTTTTATATAATA
* * *
39214478 TATGTGTATATATATA
1 TTTTTTTATATA-ATA
*
39214494 TTTTTTTAT-GAATA
1 TTTTTTTATATAATA
39214508 TTTTTCTATATATGAATA
1 TTTTT-T-TATAT-AATA
39214526 TTTTTTTATAT
1 TTTTTTTATAT
39214537 TTATACGTAT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
14 17 0.30
15 3 0.05
16 27 0.47
17 1 0.02
18 9 0.16
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (15 bp):
TTTTTTTATATAATA
Found at i:39214491 original size:32 final size:31
Alignment explanation
Indices: 39214454--39214534 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 31
39214444 AAATTTTTTT
* *
39214454 TATATAATTATTTTTTTATCTATATATGTGTA
1 TATATAA-TATTTTTTTATCAATATATGTCTA
* * *
39214486 TATAT-ATATTTTTTTATGAATATTTTTCTA
1 TATATAATATTTTTTTATCAATATATGTCTA
39214516 TATATGAATATTTTTTTAT
1 TATAT-AATATTTTTTTAT
39214535 ATTTATACGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 24 0.57
31 1 0.02
32 17 0.40
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (31 bp):
TATATAATATTTTTTTATCAATATATGTCTA
Found at i:39214521 original size:18 final size:18
Alignment explanation
Indices: 39214500--39214536 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
39214490 TATATTTTTT
39214500 TATGAATATTTTTCTATA
1 TATGAATATTTTTCTATA
*
39214518 TATGAATATTTTTTTATA
1 TATGAATATTTTTCTATA
39214536 T
1 T
39214537 TTATACGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (18 bp):
TATGAATATTTTTCTATA
Found at i:39214548 original size:30 final size:29
Alignment explanation
Indices: 39214454--39214550 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 29
39214444 AAATTTTTTT
* * * *
39214454 TATATAATTATTTTTTTATCTATATATGTG
1 TATATAA-TATTTTTTTATATTTATACGTA
* *
39214484 TATATATATATTTTTTTATGAATATTTTTC-TA
1 TATATA-ATATTTTTTTAT--AT-TTATACGTA
39214516 TATATGAATATTTTTTTATATTTATACGTA
1 TATAT-AATATTTTTTTATATTTATACGTA
39214546 TATAT
1 TATAT
39214551 TTATGTTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
29 4 0.08
30 26 0.49
31 1 0.02
32 19 0.36
33 3 0.06
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (29 bp):
TATATAATATTTTTTTATATTTATACGTA
Found at i:39214775 original size:21 final size:20
Alignment explanation
Indices: 39214735--39214777 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
39214725 TTAGGTACCT
*
39214735 TTTATTCTTTATTTTTTTTA
1 TTTATTCTTTATTTTGTTTA
39214755 TTTAGTTCTTTCA-TTTGTTTA
1 TTTA-TTCTTT-ATTTTGTTTA
39214776 TT
1 TT
39214778 AATTTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTCTTTATTTTGTTTA
Found at i:39214914 original size:15 final size:15
Alignment explanation
Indices: 39214894--39214928 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
39214884 TTTCTATGCC
39214894 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
39214909 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
39214924 ATTGT
1 ATTGT
39214929 AGCATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (15 bp):
ATTGTTGTATTTATT
Found at i:39216483 original size:37 final size:39
Alignment explanation
Indices: 39216427--39216513 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 39
39216417 CATTGTTGTT
* * * *
39216427 TTATTGTTATGTTGTTATTATATTACTAC-TATTTT-TT-
1 TTATTTTTATTTTGATATTATATAACT-CTTATTTTATTG
*
39216464 TTGTTTTTATTTTGATATTATATAACTCTTATTTTATTG
1 TTATTTTTATTTTGATATTATATAACTCTTATTTTATTG
39216503 TTATTTTTATT
1 TTATTTTTATT
39216514 ATTATTTTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
36 1 0.02
37 28 0.68
38 2 0.05
39 10 0.24
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.67
Consensus pattern (39 bp):
TTATTTTTATTTTGATATTATATAACTCTTATTTTATTG
Found at i:39229872 original size:82 final size:82
Alignment explanation
Indices: 39229735--39229937 Score: 370
Period size: 82 Copynumber: 2.5 Consensus size: 82
39229725 GATATACGTC
*
39229735 TTTCAACAAATCATTTCAAAAAACAAAAAAAATATGTTATACTAACAAAATGATCCTATAGCAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGT
39229800 AAGATGTTAACCAACCA
66 AAGATGTTAACCAACCA
* *
39229817 TTTCAACAAATCATTTAAAAAAACAAACAAAATATGTTATGCTAACAAAATGATCCTATAGCAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGT
*
39229882 AAGATGTTAACCAATCA
66 AAGATGTTAACCAACCA
39229899 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
39229938 ACCATCTCAA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 116 1.00
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAGCAGT
AAGATGTTAACCAACCA
Found at i:39230465 original size:158 final size:154
Alignment explanation
Indices: 39230013--39230466 Score: 527
Period size: 158 Copynumber: 2.9 Consensus size: 154
39230003 TATGCCATCT
* *
39230013 TTTTTTGGCTTCTAGTTCTCATACTCGTACCAGACTAAGA-ATAAAAATCAAAACCCCAAATTAG
1 TTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGACA-AAAAATCAGAA-CCCAAATTAG
* * ** *
39230077 ATTTAAATAATTTGGAATTAACATTAAAAAAGTGTTTACGATATATTTGTGATCTAGTTGTGTTA
64 ATTTAAATATTTTGGAATTGACATT-AAAAAGTGTTTACGATATACCTGTGATCCAGTTGTGTTA
* *
39230142 GGCTGAATGCATGGTGTTCTGTTGTTC
128 GGCTGAATGCATGGTGTTATGTTGTTA
* * * *
39230169 TTTTTTGGCTTCTAGTTCTTGTACTCATACCAAACTAAGACCAAAAACATTAGAACCCTAAATTA
1 TTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGA-CAAAAA-ATCAGAACCC-AAATTA
* ** * *
39230234 GATTAAAATATTTTTTAATTGACATTAAAATAGTGTATACGATATACCTGTGATCCAGTTGTATT
63 GATTTAAATATTTTGGAATTGACATTAAAA-AGTGTTTACGATATACCTGTGATCCAGTTGTGTT
* *
39230299 AAGCTGAATGTGA-GGTGTTATGTTGTTA
127 AGGCTGAATG-CATGGTGTTATGTTGTTA
* *
39230327 TTTTTTGGGCTTTTAGTTCTCGTACTTGTACCAGACTAAGAGCAACAAAATCAGAACCCAAATTA
1 TTTTTT-GGCTTCTAGTTCTCGTACTCGTACCAGACTAAGA-CAA-AAAATCAGAACCCAAATTA
* * * *
39230392 GATTTTAATATTTTGGAATTGACAATTAAAAAGTGTTTACAATATACCTATGTTCCCA-TTGTGT
63 GATTTAAATATTTTGGAATTGAC-ATTAAAAAGTGTTTACGATATACCTGTGAT-CCAGTTGTGT
*
39230456 TAGGTTGAATG
126 TAGGCTGAATG
39230467 AATGATCTTT
Statistics
Matches: 250, Mismatches: 38, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
156 36 0.14
157 11 0.04
158 148 0.59
159 52 0.21
160 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (154 bp):
TTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGACAAAAAATCAGAACCCAAATTAGAT
TTAAATATTTTGGAATTGACATTAAAAAGTGTTTACGATATACCTGTGATCCAGTTGTGTTAGGC
TGAATGCATGGTGTTATGTTGTTA
Found at i:39230590 original size:21 final size:22
Alignment explanation
Indices: 39230549--39230590 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
39230539 CTAGGCTTCA
*
39230549 CTTTTTTCAGTTCATTTTTTGC
1 CTTTTTTCAGTTCATTCTTTGC
39230571 CTTTTTTCTA-TTC-TTCTTTG
1 CTTTTTTC-AGTTCATTCTTTG
39230591 GCCTACCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 11 0.61
23 1 0.06
ACGTcount: A:0.07, C:0.19, G:0.07, T:0.67
Consensus pattern (22 bp):
CTTTTTTCAGTTCATTCTTTGC
Found at i:39232679 original size:6 final size:6
Alignment explanation
Indices: 39232668--39232693 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
39232658 ACCACTCTCT
39232668 CCCTCA CCCTCA CCCTCA CCCTCA CC
1 CCCTCA CCCTCA CCCTCA CCCTCA CC
39232694 ACATTTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.69, G:0.00, T:0.15
Consensus pattern (6 bp):
CCCTCA
Found at i:39235054 original size:984 final size:984
Alignment explanation
Indices: 39233147--39235114 Score: 3936
Period size: 984 Copynumber: 2.0 Consensus size: 984
39233137 AAAAAACATA
39233147 AACATAATGACAAACAATGTGCAGTCAAAAAAGATATATACAAACAAATTATTAAATAATATAAA
1 AACATAATGACAAACAATGTGCAGTCAAAAAAGATATATACAAACAAATTATTAAATAATATAAA
39233212 TCATAAAAAATTTATATAAAGTTAAATGATTTAATAATTATATACATGTCATAACAAACATCAAT
66 TCATAAAAAATTTATATAAAGTTAAATGATTTAATAATTATATACATGTCATAACAAACATCAAT
39233277 AAAACATGGAGGGACCACTTCCATTCCTCGTGCAGTGAAAAATCTAAAATTATTGCCCCCACCAA
131 AAAACATGGAGGGACCACTTCCATTCCTCGTGCAGTGAAAAATCTAAAATTATTGCCCCCACCAA
39233342 AGTTATCAACAACAGCAAACAGAAACAACAACCAACAGACATATTAAACATAAAGCTTCTTCTTC
196 AGTTATCAACAACAGCAAACAGAAACAACAACCAACAGACATATTAAACATAAAGCTTCTTCTTC
39233407 GAAAAAGACATGTTGAAGGCTATATATTGGAGGTTATGGTTTATAACAGTGCTCTTGAACTTAGA
261 GAAAAAGACATGTTGAAGGCTATATATTGGAGGTTATGGTTTATAACAGTGCTCTTGAACTTAGA
39233472 GTTACAAAGGATGGTAGATAAATAATTGGTAAAGGAATAAGACATATTTTCAAAATATATTAGCA
326 GTTACAAAGGATGGTAGATAAATAATTGGTAAAGGAATAAGACATATTTTCAAAATATATTAGCA
39233537 AAGTCCTTGGAAAATTATCTGTACCAAGGATGCAGAACTCAATGAAACTACGCGTTAACATTGCA
391 AAGTCCTTGGAAAATTATCTGTACCAAGGATGCAGAACTCAATGAAACTACGCGTTAACATTGCA
39233602 AATGTTGAACCTGCAAAAGATGGGATCTCTAGTTTGGCAAAGCAGACAGAAAAACATTTATAAAA
456 AATGTTGAACCTGCAAAAGATGGGATCTCTAGTTTGGCAAAGCAGACAGAAAAACATTTATAAAA
39233667 TTCAGTTTAAATTAAAAAATACAAATTATTTACTAAACATAAAAAAATATTCTTAAACCAAATAA
521 TTCAGTTTAAATTAAAAAATACAAATTATTTACTAAACATAAAAAAATATTCTTAAACCAAATAA
39233732 GAAGTAGTAGTCTTTTTTATTGGCTCAATAAAATTGTAGTTATATTGGTTAAGTGAGTATAAATT
586 GAAGTAGTAGTCTTTTTTATTGGCTCAATAAAATTGTAGTTATATTGGTTAAGTGAGTATAAATT
39233797 GACAACAATTGTGAAGGCTCAAATACTCTTCAATTAATTACCTCTCCAAATTTGTAGTAATAATA
651 GACAACAATTGTGAAGGCTCAAATACTCTTCAATTAATTACCTCTCCAAATTTGTAGTAATAATA
39233862 GGAAAAAAGAACACGATATAATATAGTTTCTTAAATTATTAAAATTATTGGAGAACCTTTTACAT
716 GGAAAAAAGAACACGATATAATATAGTTTCTTAAATTATTAAAATTATTGGAGAACCTTTTACAT
39233927 GGCTAAGCCATTCAATTATATACCATTATAATAACTAAATTTTAGAAAAAAAAATTAATAATTCA
781 GGCTAAGCCATTCAATTATATACCATTATAATAACTAAATTTTAGAAAAAAAAATTAATAATTCA
39233992 ACTCCTTCAATTGTCAGTTAATTATAATTAAAAAGCATGGAAAGACAGATAACATTTGAACAAAT
846 ACTCCTTCAATTGTCAGTTAATTATAATTAAAAAGCATGGAAAGACAGATAACATTTGAACAAAT
39234057 AAAGAAACTACTACAGTACTAGGTTTTCATTTATTTAATTTTTCCCAGGACATTAGGCCATTCCC
911 AAAGAAACTACTACAGTACTAGGTTTTCATTTATTTAATTTTTCCCAGGACATTAGGCCATTCCC
39234122 CAGTGGATC
976 CAGTGGATC
39234131 AACATAATGACAAACAATGTGCAGTCAAAAAAGATATATACAAACAAATTATTAAATAATATAAA
1 AACATAATGACAAACAATGTGCAGTCAAAAAAGATATATACAAACAAATTATTAAATAATATAAA
39234196 TCATAAAAAATTTATATAAAGTTAAATGATTTAATAATTATATACATGTCATAACAAACATCAAT
66 TCATAAAAAATTTATATAAAGTTAAATGATTTAATAATTATATACATGTCATAACAAACATCAAT
39234261 AAAACATGGAGGGACCACTTCCATTCCTCGTGCAGTGAAAAATCTAAAATTATTGCCCCCACCAA
131 AAAACATGGAGGGACCACTTCCATTCCTCGTGCAGTGAAAAATCTAAAATTATTGCCCCCACCAA
39234326 AGTTATCAACAACAGCAAACAGAAACAACAACCAACAGACATATTAAACATAAAGCTTCTTCTTC
196 AGTTATCAACAACAGCAAACAGAAACAACAACCAACAGACATATTAAACATAAAGCTTCTTCTTC
39234391 GAAAAAGACATGTTGAAGGCTATATATTGGAGGTTATGGTTTATAACAGTGCTCTTGAACTTAGA
261 GAAAAAGACATGTTGAAGGCTATATATTGGAGGTTATGGTTTATAACAGTGCTCTTGAACTTAGA
39234456 GTTACAAAGGATGGTAGATAAATAATTGGTAAAGGAATAAGACATATTTTCAAAATATATTAGCA
326 GTTACAAAGGATGGTAGATAAATAATTGGTAAAGGAATAAGACATATTTTCAAAATATATTAGCA
39234521 AAGTCCTTGGAAAATTATCTGTACCAAGGATGCAGAACTCAATGAAACTACGCGTTAACATTGCA
391 AAGTCCTTGGAAAATTATCTGTACCAAGGATGCAGAACTCAATGAAACTACGCGTTAACATTGCA
39234586 AATGTTGAACCTGCAAAAGATGGGATCTCTAGTTTGGCAAAGCAGACAGAAAAACATTTATAAAA
456 AATGTTGAACCTGCAAAAGATGGGATCTCTAGTTTGGCAAAGCAGACAGAAAAACATTTATAAAA
39234651 TTCAGTTTAAATTAAAAAATACAAATTATTTACTAAACATAAAAAAATATTCTTAAACCAAATAA
521 TTCAGTTTAAATTAAAAAATACAAATTATTTACTAAACATAAAAAAATATTCTTAAACCAAATAA
39234716 GAAGTAGTAGTCTTTTTTATTGGCTCAATAAAATTGTAGTTATATTGGTTAAGTGAGTATAAATT
586 GAAGTAGTAGTCTTTTTTATTGGCTCAATAAAATTGTAGTTATATTGGTTAAGTGAGTATAAATT
39234781 GACAACAATTGTGAAGGCTCAAATACTCTTCAATTAATTACCTCTCCAAATTTGTAGTAATAATA
651 GACAACAATTGTGAAGGCTCAAATACTCTTCAATTAATTACCTCTCCAAATTTGTAGTAATAATA
39234846 GGAAAAAAGAACACGATATAATATAGTTTCTTAAATTATTAAAATTATTGGAGAACCTTTTACAT
716 GGAAAAAAGAACACGATATAATATAGTTTCTTAAATTATTAAAATTATTGGAGAACCTTTTACAT
39234911 GGCTAAGCCATTCAATTATATACCATTATAATAACTAAATTTTAGAAAAAAAAATTAATAATTCA
781 GGCTAAGCCATTCAATTATATACCATTATAATAACTAAATTTTAGAAAAAAAAATTAATAATTCA
39234976 ACTCCTTCAATTGTCAGTTAATTATAATTAAAAAGCATGGAAAGACAGATAACATTTGAACAAAT
846 ACTCCTTCAATTGTCAGTTAATTATAATTAAAAAGCATGGAAAGACAGATAACATTTGAACAAAT
39235041 AAAGAAACTACTACAGTACTAGGTTTTCATTTATTTAATTTTTCCCAGGACATTAGGCCATTCCC
911 AAAGAAACTACTACAGTACTAGGTTTTCATTTATTTAATTTTTCCCAGGACATTAGGCCATTCCC
39235106 CAGTGGATC
976 CAGTGGATC
39235115 TATCCTTAGA
Statistics
Matches: 984, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
984 984 1.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (984 bp):
AACATAATGACAAACAATGTGCAGTCAAAAAAGATATATACAAACAAATTATTAAATAATATAAA
TCATAAAAAATTTATATAAAGTTAAATGATTTAATAATTATATACATGTCATAACAAACATCAAT
AAAACATGGAGGGACCACTTCCATTCCTCGTGCAGTGAAAAATCTAAAATTATTGCCCCCACCAA
AGTTATCAACAACAGCAAACAGAAACAACAACCAACAGACATATTAAACATAAAGCTTCTTCTTC
GAAAAAGACATGTTGAAGGCTATATATTGGAGGTTATGGTTTATAACAGTGCTCTTGAACTTAGA
GTTACAAAGGATGGTAGATAAATAATTGGTAAAGGAATAAGACATATTTTCAAAATATATTAGCA
AAGTCCTTGGAAAATTATCTGTACCAAGGATGCAGAACTCAATGAAACTACGCGTTAACATTGCA
AATGTTGAACCTGCAAAAGATGGGATCTCTAGTTTGGCAAAGCAGACAGAAAAACATTTATAAAA
TTCAGTTTAAATTAAAAAATACAAATTATTTACTAAACATAAAAAAATATTCTTAAACCAAATAA
GAAGTAGTAGTCTTTTTTATTGGCTCAATAAAATTGTAGTTATATTGGTTAAGTGAGTATAAATT
GACAACAATTGTGAAGGCTCAAATACTCTTCAATTAATTACCTCTCCAAATTTGTAGTAATAATA
GGAAAAAAGAACACGATATAATATAGTTTCTTAAATTATTAAAATTATTGGAGAACCTTTTACAT
GGCTAAGCCATTCAATTATATACCATTATAATAACTAAATTTTAGAAAAAAAAATTAATAATTCA
ACTCCTTCAATTGTCAGTTAATTATAATTAAAAAGCATGGAAAGACAGATAACATTTGAACAAAT
AAAGAAACTACTACAGTACTAGGTTTTCATTTATTTAATTTTTCCCAGGACATTAGGCCATTCCC
CAGTGGATC
Done.