Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 22 of 141
Found at i:6808644 original size:45 final size:46
Alignment explanation
Indices: 6808556--6808646 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
6808546 AAAATATGTC
*
6808556 TATAGTGATTGTATTTTTTGAAAATTTCAAAGTAGGAAATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
* * *
6808602 TATAGTGGTTGTATTTTTTAAAAATTTTATAGTAGG-AATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
6808647 CTGTGAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 9 0.22
46 32 0.78
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.48
Consensus pattern (46 bp):
TATAGTGATTGTATTTTTTAAAAATTTCAAAGTAGGAAATTTAATT
Found at i:6808699 original size:25 final size:26
Alignment explanation
Indices: 6808661--6808709 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
6808651 GAAGAATAAG
*
6808661 TTTTATTATAAAAATCATGTTTAATT
1 TTTTATTATAAAAATCAAGTTTAATT
*
6808687 TTTTATT-TCAAAATCAAGTTTAA
1 TTTTATTATAAAAATCAAGTTTAA
6808710 GAATTGGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (26 bp):
TTTTATTATAAAAATCAAGTTTAATT
Found at i:6810847 original size:27 final size:27
Alignment explanation
Indices: 6810798--6811242 Score: 363
Period size: 27 Copynumber: 16.6 Consensus size: 27
6810788 CGTGGGCAAG
* * *
6810798 TGACCGAAATA-CCCCGAAAGGTAAAT
1 TGACTGAAATACCCCCGAAGGGTAAAA
*
6810824 TGACTGAAATACCCCCGAAGGGTAAAG
1 TGACTGAAATACCCCCGAAGGGTAAAA
**
6810851 TGACCAAAATACCCCCGAAGGGTAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
*
6810878 TGACT-AACATACCCCCGAAAGGTAAAA
1 TGACTGAA-ATACCCCCGAAGGGTAAAA
* * *
6810905 TGACCGAAATA-CCCTGAGGGGTAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
* * * *
6810931 TGA-TCAAAATACCTCTGAAGAGTAAAA
1 TGACT-GAAATACCCCCGAAGGGTAAAA
* * * *
6810958 CGA-TCGAAATACCTCTGAGGGGTAAAA
1 TGACT-GAAATACCCCCGAAGGGTAAAA
* * *
6810985 TGA-TCAAAATACCTCCGTAGGGTAAAA
1 TGACT-GAAATACCCCCGAAGGGTAAAA
* * *
6811012 TGACAGAAATACCCTCGAAGGATAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
* *
6811039 TGACCGAAATACCCTCGAAGGGTAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
* *
6811066 TGA-TCGAAATA-CCCCTATAGGTTAAAA
1 TGACT-GAAATACCCCCGA-AGGGTAAAA
* * *
6811093 TGACAGAAATAGCCCCTAAGGGTAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
** *
6811120 TGACCAAAATACCCCCGAGGGGTAAAA
1 TGACTGAAATACCCCCGAAGGGTAAAA
*
6811147 TGA-TCGAAATACCCCTGAAGGGTAAAA
1 TGACT-GAAATACCCCCGAAGGGTAAAA
* * *
6811174 TGGCTTAAATACCCCC-AATAGGTAAAA
1 TGACTGAAATACCCCCGAA-GGGTAAAA
*
6811201 TGACAGAAATACCCCC-ATAGGGTAAAA
1 TGACTGAAATACCCCCGA-AGGGTAAAA
**
6811228 TGACTGTTATACCCC
1 TGACTGAAATACCCC
6811243 TAGGAGTCGG
Statistics
Matches: 345, Mismatches: 60, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
26 38 0.11
27 297 0.86
28 10 0.03
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (27 bp):
TGACTGAAATACCCCCGAAGGGTAAAA
Found at i:6810882 original size:54 final size:54
Alignment explanation
Indices: 6810798--6811231 Score: 400
Period size: 54 Copynumber: 8.1 Consensus size: 54
6810788 CGTGGGCAAG
* * *
6810798 TGACCGAAATA-CCCCGAAAGGTAAATTGACTGAAATACCCCCGAAGGGTAAAG
1 TGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAA
* *
6810851 TGACCAAAATACCCCCGAAGGGTAAAATGACT-AACATACCCCCGAAAGGTAAAA
1 TGACCGAAATACCCCCGAAGGGTAAAATGACTGAA-ATACCCCCGAAGGGTAAAA
* * * * * *
6810905 TGACCGAAATA-CCCTGAGGGGTAAAATGA-TCAAAATACCTCTGAAGAGTAAAA
1 TGACCGAAATACCCCCGAAGGGTAAAATGACT-GAAATACCCCCGAAGGGTAAAA
* * * * * * * *
6810958 CGATCGAAATACCTCTGAGGGGTAAAATGA-TCAAAATACCTCCGTAGGGTAAAA
1 TGACCGAAATACCCCCGAAGGGTAAAATGACT-GAAATACCCCCGAAGGGTAAAA
* * * * *
6811012 TGACAGAAATACCCTCGAAGGATAAAATGACCGAAATACCCTCGAAGGGTAAAA
1 TGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAA
* * * * * *
6811066 TGATCGAAATA-CCCCTATAGGTTAAAATGACAGAAATAGCCCCTAAGGGTAAAA
1 TGACCGAAATACCCCCGA-AGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAA
* * *
6811120 TGACCAAAATACCCCCGAGGGGTAAAATGA-TCGAAATACCCCTGAAGGGTAAAA
1 TGACCGAAATACCCCCGAAGGGTAAAATGACT-GAAATACCCCCGAAGGGTAAAA
* ** * *
6811174 TGGCTTAAATACCCCC-AATAGGTAAAATGACAGAAATACCCCC-ATAGGGTAAAA
1 TGACCGAAATACCCCCGAA-GGGTAAAATGACTGAAATACCCCCGA-AGGGTAAAA
6811228 TGAC
1 TGAC
6811232 TGTTATACCC
Statistics
Matches: 312, Mismatches: 57, Indels: 23
0.80 0.15 0.06
Matches are distributed among these distances:
52 1 0.00
53 58 0.19
54 248 0.79
55 5 0.02
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (54 bp):
TGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAA
Found at i:6811038 original size:81 final size:80
Alignment explanation
Indices: 6810798--6811230 Score: 400
Period size: 81 Copynumber: 5.4 Consensus size: 80
6810788 CGTGGGCAAG
* * *
6810798 TGACCGAAATA-CCCCGAAAGGTAAATTGA-CTGAAATACCCCCGAAGGGTAAAGTGACCAAAAT
1 TGACCGAAATACCCCCGAAGGGTAAAATGATC-GAAATA-CCCCGAAGGGTAAAATGACCAAAAT
* *
6810861 ACCCCCGAAGGGTAAAA
64 ACCCTCGAAGGATAAAA
* * * * * *
6810878 TGA-CTAACATACCCCCGAAAGGTAAAATGACCGAAATACCCTGAGGGGTAAAATGATCAAAATA
1 TGACCGAA-ATACCCCCGAAGGGTAAAATGATCGAAATACCCCGAAGGGTAAAATGACCAAAATA
6810942 -CCTCTGAA-GAGTAAAA
65 CCCTC-GAAGGA-TAAAA
* * * * * * *
6810958 CGATCGAAATACCTCTGAGGGGTAAAATGATCAAAATACCTCCGTAGGGTAAAATGA-CAGAAAT
1 TGACCGAAATACCCCCGAAGGGTAAAATGATCGAAATACC-CCGAAGGGTAAAATGACCA-AAAT
6811022 ACCCTCGAAGGATAAAA
64 ACCCTCGAAGGATAAAA
* * *
6811039 TGACCGAAATACCCTCGAAGGGTAAAATGATCGAAATACCCCTATAGGTTAAAATGA-CAGAAAT
1 TGACCGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCCGA-AGGGTAAAATGACCA-AAAT
* *
6811103 AGCCC-CTAAGGGTAAAA
64 A-CCCTCGAAGGATAAAA
* * * **
6811120 TGACCAAAATACCCCCGAGGGGTAAAATGATCGAAATACCCCTGAAGGGTAAAATGGCTTAAATA
1 TGACCGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCC-GAAGGGTAAAATGACCAAAATA
* *
6811185 CCCCCAATAGG-TAAAA
65 CCCTCGA-AGGATAAAA
*
6811201 TGACAGAAATACCCCC-ATAGGGTAAAATGA
1 TGACCGAAATACCCCCGA-AGGGTAAAATGA
6811231 CTGTTATACC
Statistics
Matches: 293, Mismatches: 43, Indels: 33
0.79 0.12 0.09
Matches are distributed among these distances:
79 7 0.02
80 72 0.25
81 200 0.68
82 14 0.05
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (80 bp):
TGACCGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCCGAAGGGTAAAATGACCAAAATAC
CCTCGAAGGATAAAA
Found at i:6815946 original size:23 final size:22
Alignment explanation
Indices: 6815920--6815962 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
6815910 AAATGGTTTA
6815920 TTTA-CCATTTAAGTCCATTTACC
1 TTTATCCA-TTAAG-CCATTTACC
*
6815943 TTTATTCATTAAGCCATTTA
1 TTTATCCATTAAGCCATTTA
6815963 ATCACTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.39
23 9 0.50
24 2 0.11
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.47
Consensus pattern (22 bp):
TTTATCCATTAAGCCATTTACC
Found at i:6818476 original size:20 final size:20
Alignment explanation
Indices: 6818451--6818494 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6818441 CCTGGTGCAA
*
6818451 ATTTT-ACTTGTTTGAAAATC
1 ATTTTAACTTGGTT-AAAATC
*
6818471 ATTTTAACTTGGTTAAAATT
1 ATTTTAACTTGGTTAAAATC
6818491 ATTT
1 ATTT
6818495 GCACTTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.52
Consensus pattern (20 bp):
ATTTTAACTTGGTTAAAATC
Found at i:6818500 original size:20 final size:21
Alignment explanation
Indices: 6818477--6818516 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
6818467 AATCATTTTA
6818477 ACTTG-GTTAAAATTATTTGC
1 ACTTGAGTTAAAATTATTTGC
*
6818497 ACTTGATTTTAAAATTATTT
1 ACTTGA-GTTAAAATTATTT
6818517 CAAAGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
22 12 0.71
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
ACTTGAGTTAAAATTATTTGC
Found at i:6825183 original size:20 final size:20
Alignment explanation
Indices: 6825160--6825207 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
6825150 TTGTTATTGC
* *
6825160 ATTTTATTTTTTTTAGTTTT
1 ATTTTATTTTTCTAAGTTTT
6825180 ATTTT-TGTTTTCTAAGTTTT
1 ATTTTAT-TTTTCTAAGTTTT
6825200 -TTTTATTT
1 ATTTTATTT
6825208 GCTTATGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (20 bp):
ATTTTATTTTTCTAAGTTTT
Found at i:6831339 original size:30 final size:29
Alignment explanation
Indices: 6831305--6831377 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
6831295 GGTCGAAACA
* * **
6831305 ATCCCTTTTTATTAATTGGTGGTTGTCACC
1 ATCCCTTTTCA-TAATTGATGGTCATCACC
*
6831335 ATCCCTTTTCATAGTTGATGGTCATCACC
1 ATCCCTTTTCATAATTGATGGTCATCACC
6831364 ATCCC-TTTCATAAT
1 ATCCCTTTTCATAAT
6831378 CGATCACCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 8 0.22
29 19 0.51
30 10 0.27
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (29 bp):
ATCCCTTTTCATAATTGATGGTCATCACC
Found at i:6834649 original size:30 final size:30
Alignment explanation
Indices: 6834613--6834673 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
6834603 AATGTTCTAC
6834613 AAGTTTGCTCAAAAAGGTCATCCAATTATT
1 AAGTTTGCTCAAAAAGGTCATCCAATTATT
* *
6834643 AAGTTTGCTCAGAAAGGTCATCTAATTATT
1 AAGTTTGCTCAAAAAGGTCATCCAATTATT
6834673 A
1 A
6834674 TAGGTACCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (30 bp):
AAGTTTGCTCAAAAAGGTCATCCAATTATT
Found at i:6839602 original size:25 final size:25
Alignment explanation
Indices: 6839547--6839636 Score: 103
Period size: 25 Copynumber: 3.6 Consensus size: 25
6839537 ACCATCGAGA
*
6839547 AGCTCGTGAGAGCATACCGATTTAC
1 AGCTCGTGAGAGCATACCAATTTAC
*
6839572 AACTCGTGAGAGCATACCAATTTA-
1 AGCTCGTGAGAGCATACCAATTTAC
* * *
6839596 ATGCTCGAGTGAGCATACCAATTCAC
1 A-GCTCGTGAGAGCATACCAATTTAC
6839622 AGCTCGT-ATGAGCAT
1 AGCTCGTGA-GAGCAT
6839637 GCATGTATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCAATTTAC
Found at i:6840039 original size:46 final size:46
Alignment explanation
Indices: 6839989--6840080 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
6839979 ATTATGTGAT
*
6839989 TAAATGGTACGTTATGTTTTAAATTATACAAACTTACTAAGCTTAA
1 TAAATGGTAAGTTATGTTTTAAATTATACAAACTTACTAAGCTTAA
6840035 TAAATGGTAAGTTATGTTTTAAATTATACAAACTTACTAAGCTTAA
1 TAAATGGTAAGTTATGTTTTAAATTATACAAACTTACTAAGCTTAA
6840081 ATGCTTACTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (46 bp):
TAAATGGTAAGTTATGTTTTAAATTATACAAACTTACTAAGCTTAA
Found at i:6841702 original size:51 final size:51
Alignment explanation
Indices: 6841619--6841807 Score: 225
Period size: 51 Copynumber: 3.7 Consensus size: 51
6841609 AAAGCTATCC
* * *
6841619 GGTACACATAGTAGCCTACACTTAGTGCTACACATGTGACCATTACCATCT
1 GGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCT
* * * * ** *
6841670 GGTACACTTACTAGCCTGCACATAGTATTACACACGTGACCAAAACTATCT
1 GGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCT
* * *
6841721 GGTACACATAGTAGCCTGCACTTAGTACTGCACATGTGACCATTACCATCC
1 GGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCT
* * **
6841772 AGTGCATGTAGTAGCCTGCACATAGTACTACACATG
1 GGTACACATAGTAGCCTGCACATAGTACTACACATG
6841808 AGTTCTCATG
Statistics
Matches: 112, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 112 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
GGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCT
Found at i:6841737 original size:102 final size:102
Alignment explanation
Indices: 6841608--6841805 Score: 290
Period size: 102 Copynumber: 1.9 Consensus size: 102
6841598 CCCTTATGAT
* * **
6841608 CAAAGCTATCCGGTACACATAGTAGCCTACACTTAGTGCTACACATGTGACCATTACCATCTGGT
1 CAAAACTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCATTACCATCCAGT
*
6841673 ACACT-TACTAGCCTGCACATAGTATTACACACGTGAC
66 ACA-TGTACTAGCCTGCACATAGTACTACACACGTGAC
* * *
6841710 CAAAACTATCTGGTACACATAGTAGCCTGCACTTAGTACTGCACATGTGACCATTACCATCCAGT
1 CAAAACTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCATTACCATCCAGT
* *
6841775 GCATGTAGTAGCCTGCACATAGTACTACACA
66 ACATGTACTAGCCTGCACATAGTACTACACA
6841806 TGAGTTCTCA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 1 0.01
102 84 0.99
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (102 bp):
CAAAACTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCATTACCATCCAGT
ACATGTACTAGCCTGCACATAGTACTACACACGTGAC
Found at i:6852501 original size:40 final size:40
Alignment explanation
Indices: 6852457--6852718 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
6852447 GCTCCTCGTT
* *
6852457 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
6852497 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6852537 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6852576 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
6852615 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
6852654 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
6852695 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6852719 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:6853815 original size:14 final size:14
Alignment explanation
Indices: 6853796--6853822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6853786 AGGATGAGCA
6853796 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
6853810 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
6853823 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:6854757 original size:26 final size:26
Alignment explanation
Indices: 6854726--6854820 Score: 127
Period size: 26 Copynumber: 3.7 Consensus size: 26
6854716 CGTTCTAACC
*
6854726 CACAACTCGTGTGAGCAGACCCATTT
1 CACAACTCGTGTGAGCAGGCCCATTT
* * *
6854752 CACAACTCGTGTCAGAAGGCCCATGT
1 CACAACTCGTGTGAGCAGGCCCATTT
* *
6854778 CACAGCTCGTGTGGGCAGGCCCATTT
1 CACAACTCGTGTGAGCAGGCCCATTT
*
6854804 CACAGCTCGTGTGAGCA
1 CACAACTCGTGTGAGCA
6854821 ATGATGTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (26 bp):
CACAACTCGTGTGAGCAGGCCCATTT
Found at i:6857440 original size:18 final size:18
Alignment explanation
Indices: 6857413--6857454 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6857403 TGCTGGAATA
*
6857413 AATTAATTAAGTT-AGTTT
1 AATTAATTAA-TTCAGCTT
*
6857431 AATTAGTTAATTCAGCTT
1 AATTAATTAATTCAGCTT
6857449 AATTAA
1 AATTAA
6857455 ATGTTGAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (18 bp):
AATTAATTAATTCAGCTT
Found at i:6861055 original size:16 final size:15
Alignment explanation
Indices: 6861036--6861065 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6861026 GAGTGGAGGA
6861036 AAAGTGAAAGGAAAAC
1 AAAGTGAAA-GAAAAC
6861052 AAAGTGAAAGAAAA
1 AAAGTGAAAGAAAA
6861066 TTGAGTGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.07
Consensus pattern (15 bp):
AAAGTGAAAGAAAAC
Found at i:6865836 original size:81 final size:81
Alignment explanation
Indices: 6865701--6865862 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 81
6865691 TAAAGCTTTG
*
6865701 TATGGTCAAAAGTGTCGAACTCCATTGTACTAGACTGAGCTTAGTGGAAAAAATTATTCGGTGTT
1 TATGGTCAAAAGTGTCGAACTCCATTGTACTAGACTGAGCTTAGTGGAAAAAATTATTCGATGTT
6865766 GATTTGATACGACAAA
66 GATTTGATACGACAAA
* *
6865782 TATGGTCAAAAGTGTTGAACTCCTTTGTACTAGACTGAGCTTAGTGGAAAAAATTATTCGATGTT
1 TATGGTCAAAAGTGTCGAACTCCATTGTACTAGACTGAGCTTAGTGGAAAAAATTATTCGATGTT
6865847 GATTTGATACGACAAA
66 GATTTGATACGACAAA
6865863 CTGAAGAAAA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (81 bp):
TATGGTCAAAAGTGTCGAACTCCATTGTACTAGACTGAGCTTAGTGGAAAAAATTATTCGATGTT
GATTTGATACGACAAA
Found at i:6870887 original size:11 final size:11
Alignment explanation
Indices: 6870871--6870903 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
6870861 TGAATTTAAA
6870871 AAAAGTTTTTT
1 AAAAGTTTTTT
6870882 AAAAGTGTTTTT
1 AAAAGT-TTTTT
6870894 AAAA-TTTTTT
1 AAAAGTTTTTT
6870904 GATAATGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 7 0.33
12 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (11 bp):
AAAAGTTTTTT
Found at i:6873518 original size:16 final size:15
Alignment explanation
Indices: 6873498--6873541 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6873488 CGAATTCAAA
6873498 TAATTTTAAAT-TTT
1 TAATTTTAAATATTT
*
6873512 ATAAATTATAAATATTT
1 -T-AATTTTAAATATTT
6873529 TAATTTTAAATAT
1 TAATTTTAAATAT
6873542 AACAACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 10 0.40
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAATTTTAAATATTT
Found at i:6873518 original size:25 final size:24
Alignment explanation
Indices: 6873490--6873563 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
6873480 GGCTCTGACG
6873490 AATT-CAAATAATTTTAAATTTTATA
1 AATTACAAAT-ATTTT-AATTTTATA
*
6873515 AATTATAAATATTTTAATTTTA-A
1 AATTACAAATATTTTAATTTTATA
* * *
6873538 ATATAACAACTCATTTTATTTTTATA
1 A-ATTACAAAT-ATTTTAATTTTATA
6873564 TGATGAATAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.05
24 13 0.32
25 20 0.50
26 5 0.12
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (24 bp):
AATTACAAATATTTTAATTTTATA
Found at i:6875267 original size:23 final size:23
Alignment explanation
Indices: 6875240--6875299 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
6875230 GGGCATTACG
*
6875240 GAATACGCCACAAAGGCTCCACA
1 GAATACGCCACAAAGACTCCACA
* * * *
6875263 TAATATGCCACAAAGACTTCATA
1 GAATACGCCACAAAGACTCCACA
6875286 GAATACGCCACAAA
1 GAATACGCCACAAA
6875300 AGCATCATAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.43, C:0.28, G:0.13, T:0.15
Consensus pattern (23 bp):
GAATACGCCACAAAGACTCCACA
Found at i:6875307 original size:23 final size:22
Alignment explanation
Indices: 6875240--6875311 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 22
6875230 GGGCATTACG
* *
6875240 GAATACGCCACAAAGGCTCCACA
1 GAATACGCCACAAAAGCT-CATA
* *
6875263 TAATATGCCAC-AAAGACTTCATA
1 GAATACGCCACAAAAG-C-TCATA
6875286 GAATACGCCACAAAAGCATCATA
1 GAATACGCCACAAAAGC-TCATA
6875309 GAA
1 GAA
6875312 AATTCCATAC
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
22 3 0.08
23 31 0.79
24 5 0.13
ACGTcount: A:0.44, C:0.26, G:0.14, T:0.15
Consensus pattern (22 bp):
GAATACGCCACAAAAGCTCATA
Found at i:6878130 original size:50 final size:50
Alignment explanation
Indices: 6878020--6878135 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 50
6878010 GGGAATGAGA
* * * * **
6878020 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAAC
** * *
6878070 TCCCCCGTAAGACCATGTCTAGGACATGGTATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAAC
*
6878120 TCTCATGTAAGACCAT
1 TCCCATGTAAGACCAT
6878136 ATTTGGGATA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:6878422 original size:12 final size:12
Alignment explanation
Indices: 6878405--6878443 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
6878395 ATGAGTTATT
6878405 TAAGTAAACAAG
1 TAAGTAAACAAG
6878417 TAAGTAAACAAG
1 TAAGTAAACAAG
* *
6878429 TAAGTGAATAAG
1 TAAGTAAACAAG
6878441 TAA
1 TAA
6878444 AGAAGCGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.56, C:0.05, G:0.18, T:0.21
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:6878780 original size:53 final size:53
Alignment explanation
Indices: 6878705--6878812 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
6878695 TGTTTATATG
* * *
6878705 ATATGGCTAATGGTTAGTTATTGAAATGGCTAATTAATAACATGTTTGGTGTT
1 ATATGGCTAATGATTAGCTATTGAAATGGCTAATTAAGAACATGTTTGGTGTT
6878758 ATATGGCTAATGATTAGCTATTGAAATGGCTAATTAAGAACATGTTTGGTGTT
1 ATATGGCTAATGATTAGCTATTGAAATGGCTAATTAAGAACATGTTTGGTGTT
6878811 AT
1 AT
6878813 GGATGCCTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.40
Consensus pattern (53 bp):
ATATGGCTAATGATTAGCTATTGAAATGGCTAATTAAGAACATGTTTGGTGTT
Found at i:6881181 original size:72 final size:72
Alignment explanation
Indices: 6881102--6881320 Score: 197
Period size: 72 Copynumber: 3.1 Consensus size: 72
6881092 TATACAATTA
6881102 ATATTTTGTATGAATCAAATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAG
1 ATATTTTGTATGAATCAAATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAG
6881167 TTCTTTT
66 TTCTTTT
* * * * ** ** * * *
6881174 ATATTTTG-ACCGAAAT-TAATTAATATA-ACTGTTTATATTAAT--AAATTTG-ATA-AAATAT
1 ATATTTTGTA-TG-AATCAAATTTATATATATTAATTATATTTTTCCAAA--AGAATATTAATTT
* * *
6881232 --A-TACAATTA
62 CCAGTTC-TTTT
6881241 ATATTTTGTATGAATCAAATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAG
1 ATATTTTGTATGAATCAAATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAG
6881306 TTCTTTT
66 TTCTTTT
6881313 ATATTTTG
1 ATATTTTG
6881321 ACCGAAATTA
Statistics
Matches: 104, Mismatches: 28, Indels: 30
0.64 0.17 0.19
Matches are distributed among these distances:
66 5 0.05
67 21 0.20
68 12 0.12
69 10 0.10
70 10 0.10
71 12 0.12
72 29 0.28
73 5 0.05
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (72 bp):
ATATTTTGTATGAATCAAATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAG
TTCTTTT
Found at i:6881481 original size:137 final size:136
Alignment explanation
Indices: 6880990--6881693 Score: 1068
Period size: 139 Copynumber: 5.1 Consensus size: 136
6880980 AGTTAGAAAA
* * * *
6880990 ATTAATTATATTCTTTCCACAAGAATATTAATTTCTATGTCTTTTATATTTGGACCGAAAGTAAT
1 ATTAATTATATT-TTTCCAAAAGAATATTAATTTCCAT-TCTTTTATATTTTGACCGAAATTAAT
* *
6881055 TGATATAACTGTTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAA
64 TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
6881120 ATTTATATAT
129 A-TTA-ATAT
6881130 ATTAATTATATTTTTCCAAAAGAATATTAATTTCCAGTTCTTTTATATTTTGACCGAAATTAATT
1 ATTAATTATATTTTTCCAAAAGAATATTAATTTCCA-TTCTTTTATATTTTGACCGAAATTAATT
*
6881195 AATATAACTGTTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAA
65 AATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAA
6881260 TTTATATAT
130 -TTA-ATAT
6881269 ATTAATTATATTTTTCCAAAAGAATATTAATTTCCAGTTCTTTTATATTTTGACCGAAATTAATT
1 ATTAATTATATTTTTCCAAAAGAATATTAATTTCCA-TTCTTTTATATTTTGACCGAAATTAATT
* *
6881334 AATATAACTGTTTATATTAATAAATTCAATAAAATATATAAAATTAATATTTTGTATGAATCAAA
65 AATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAA
6881399 TTAATAT
130 TTAATAT
* * **
6881406 ATTAATTATATTATTTCC-AAATAATGTTAATTTTTATATCTTTTATATTTTGACCGAAATTAAT
1 ATTAATTATATT-TTTCCAAAAGAATATTAATTTCCAT-TCTTTTATATTTTGACCGAAATTAAT
* * *
6881470 TATTTTGACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
64 TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
*
6881535 ATTCATAT
129 ATTAATAT
* *
6881543 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATCAAAATTAAT
1 ATTAATTATATT-TTTCCAAAAGAATATTAATTTCCAT-TCTTTTATATTTTGACCGAAATTAAT
* * * * *
6881608 TAATATAATTTTTTATGTTAATAATTTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
64 TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
*
6881673 ATTCATAT
129 ATTAATAT
6881681 ATTAATTATATTT
1 ATTAATTATATTT
6881694 ATGTTCTCTA
Statistics
Matches: 526, Mismatches: 34, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
136 1 0.00
137 141 0.27
138 124 0.24
139 247 0.47
140 13 0.02
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.46
Consensus pattern (136 bp):
ATTAATTATATTTTTCCAAAAGAATATTAATTTCCATTCTTTTATATTTTGACCGAAATTAATTA
ATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAAT
TAATAT
Found at i:6881524 original size:276 final size:275
Alignment explanation
Indices: 6880990--6881693 Score: 1092
Period size: 275 Copynumber: 2.5 Consensus size: 275
6880980 AGTTAGAAAA
* * * *
6880990 ATTAATTATATTCTTTCCACAAGAATATTAATTTCTATGTCTTTTATATTTGGACCGAAAGTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAAT
* *
6881055 TGATATAACTGTTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAA
66 TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
6881120 ATTTATATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAGTTCTTTTATATTTTGACC
131 A-TTA-ATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAGTTCTTTTATATTTTGACC
*
6881185 GAAATTAATTAATATAACTGTTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGT
194 GAAATTAATTAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGT
*
6881250 ATGAATCAAATTTATATAT
259 ATGAATCAAA-TT-CATAT
6881269 ATTAATTATATT-TTTCCAAAAGAATATTAATTTCCA-GTTCTTTTATATTTTGACCGAAATTAA
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG-TCTTTTATATTTTGACCGAAATTAA
* *
6881332 TTAATATAACTGTTTATATTAATAAATTCAATAAAATATATAAAATTAATATTTTGTATGAATCA
65 TTAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCA
* * **
6881397 AATTAATATATTAATTATATTATTTCC-AAATAATGTTAATTTTTA-TATCTTTTATATTTTGAC
130 AATTAATATATTAATTATATT-TTTCCAAAAGAATATTAATTTCCAGT-TCTTTTATATTTTGAC
* * *
6881460 CGAAATTAATTATTTTGACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTG
193 CGAAATTAATTAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTG
6881525 TATGAATCAAATTCATAT
258 TATGAATCAAATTCATAT
* *
6881543 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATCAAAATTAAT
1 ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAAT
* * * * *
6881608 TAATATAATTTTTTATGTTAATAATTTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
66 TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
*
6881673 ATTCATATATTAATTATATTT
131 ATTAATATATTAATTATATTT
6881694 ATGTTCTCTA
Statistics
Matches: 393, Mismatches: 27, Indels: 15
0.90 0.06 0.03
Matches are distributed among these distances:
274 17 0.04
275 128 0.33
276 119 0.30
277 9 0.02
278 108 0.27
279 12 0.03
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.46
Consensus pattern (275 bp):
ATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAAT
TAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAA
ATTAATATATTAATTATATTTTTCCAAAAGAATATTAATTTCCAGTTCTTTTATATTTTGACCGA
AATTAATTAATATAACTGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTAT
GAATCAAATTCATAT
Found at i:6898526 original size:27 final size:27
Alignment explanation
Indices: 6898485--6898601 Score: 121
Period size: 27 Copynumber: 4.3 Consensus size: 27
6898475 GTAATGGGCT
**
6898485 TAAAATGATTGAAATACCCTCGAAGTG
1 TAAAATGACCGAAATACCCTCGAAGTG
* *
6898512 TAAAATGACCAAAATACCCCCGAAG-G
1 TAAAATGACCGAAATACCCTCGAAGTG
* **
6898538 ATAAAATGACTGAAATACCCTTAAAGTG
1 -TAAAATGACCGAAATACCCTCGAAGTG
* *
6898566 TAAAATGACCGAAATACCC-CCATAGGG
1 TAAAATGACCGAAATACCCTCGA-AGTG
6898593 TAAAATGAC
1 TAAAATGAC
6898602 TGTTATGCAT
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.03
27 71 0.96
28 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGTG
Found at i:6898567 original size:54 final size:54
Alignment explanation
Indices: 6898485--6898603 Score: 177
Period size: 54 Copynumber: 2.2 Consensus size: 54
6898475 GTAATGGGCT
* *
6898485 TAAAATGATTGAAATACCCTCGAAGTGTAAAATGACCAAAATACCCCCGA-AGGA
1 TAAAATGACTGAAATACCCTCAAAGTGTAAAATGACCAAAATACCCCC-ATAGGA
* * *
6898539 TAAAATGACTGAAATACCCTTAAAGTGTAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACTGAAATACCCTCAAAGTGTAAAATGACCAAAATACCCCCATAGGA
6898593 TAAAATGACTG
1 TAAAATGACTG
6898604 TTATGCATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.02
54 58 0.98
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (54 bp):
TAAAATGACTGAAATACCCTCAAAGTGTAAAATGACCAAAATACCCCCATAGGA
Found at i:6898783 original size:26 final size:26
Alignment explanation
Indices: 6898754--6898830 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
6898744 ATGCCACATA
*
6898754 TACTGTTACTGGCAGCTTTGTTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * *
6898780 TACTGATACTGGTAGCCTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* *
6898806 TATTATTACTGGCAGCTTTGCTGCG
1 TACTGTTACTGGCAGCTTTGCTGCG
6898831 ATATTGGTGT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.39
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:6909748 original size:24 final size:24
Alignment explanation
Indices: 6909715--6909761 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6909705 CTGGCATCAC
* * *
6909715 GGATAGTCCGCTGGGACATTAATA
1 GGATAATCCGCTGAGACACTAATA
6909739 GGATAATCCGCTGAGACACTAAT
1 GGATAATCCGCTGAGACACTAAT
6909762 CACAGATAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (24 bp):
GGATAATCCGCTGAGACACTAATA
Found at i:6912614 original size:27 final size:27
Alignment explanation
Indices: 6912583--6912998 Score: 400
Period size: 27 Copynumber: 15.4 Consensus size: 27
6912573 CCCCAAAATA
* *
6912583 GGTAAAATGACCAAAATACCCCTAAAG
1 GGTAAAATGACCGAAATACCCCTATAG
* **
6912610 GGTAAAATGA-CTATTTTACCCCTAATA-
1 GGTAAAATGACCGA-AATACCCCT-ATAG
* **
6912637 GATGAAAATGATTGAAATA-CCCTCATAG
1 GGT-AAAATGACCGAAATACCCCT-ATAG
* *
6912665 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
6912692 GGTAAAATGATCGAAATACCTCC-ATAG
1 GGTAAAATGACCGAAATACC-CCTATAG
* * *
6912719 GGTAAAATAACTGAAATAGCCCC-ATCG
1 GGTAAAATGACCGAAATA-CCCCTATAG
*
6912746 GGTAAAATCACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
*
6912773 GGTAAAATGACCAAAATACTCCC-ATAG
1 GGTAAAATGACCGAAATAC-CCCTATAG
* *
6912800 GATAAAATGACTGAAATACCACC-ATAG
1 GGTAAAATGACCGAAATACC-CCTATAG
* *
6912827 GGT-AAATAACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
6912853 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
** *
6912880 GGTAAAATGAATGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
6912907 GGTAAAATGATCGAAATACCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
6912934 GGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
6912961 GGTGAAATGACCAAAATACCCCCACAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
6912988 GGTCAAATGAC
1 GGTAAAATGAC
6912999 TGTTATAGCC
Statistics
Matches: 325, Mismatches: 49, Indels: 30
0.80 0.12 0.07
Matches are distributed among these distances:
25 5 0.02
26 24 0.07
27 272 0.84
28 20 0.06
29 4 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:6912718 original size:54 final size:53
Alignment explanation
Indices: 6912583--6913000 Score: 457
Period size: 54 Copynumber: 7.7 Consensus size: 53
6912573 CCCCAAAATA
* * * ** *
6912583 GGTAAAATGACCAAAATACCCCTAAAGGGTAAAATGACT-ATTTTACCCCTAATA-
1 GGTAAAATGATCGAAATACCCC-ATAGGGTAAAATGACTGA-AATACCCC-CATAG
* *
6912637 GATGAAAATGATTGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAG
1 GGT-AAAATGATCGAAATACCC-CATAGGGTAAAATGACTGAAATACCCCCATAG
* * *
6912692 GGTAAAATGATCGAAATACCTCCATAGGGTAAAATAACTGAAATAGCCCCATCG
1 GGTAAAATGATCGAAATACC-CCATAGGGTAAAATGACTGAAATACCCCCATAG
* * ** *
6912746 GGTAAAATCACCGAAATACCCTCATAGGGTAAAATGACCAAAATACTCCCATAG
1 GGTAAAATGATCGAAATACCC-CATAGGGTAAAATGACTGAAATACCCCCATAG
* * *
6912800 GATAAAATGA-CTGAAATACCACCATAGGGT-AAATAACCGAAATACCCCCATAG
1 GGTAAAATGATC-GAAATACC-CCATAGGGTAAAATGACTGAAATACCCCCATAG
*
6912853 GGTAAAATGATCGAAATACCCCTATAGGGTAAAATGAATGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCC-ATAGGGTAAAATGACTGAAATACCCCCATAG
* *
6912907 GGTAAAATGATCGAAATACCTCTATAGGGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGATCGAAATACC-CCATAGGGTAAAATGACTGAAATACCCCCATAG
* * * * *
6912961 GGTGAAATGACCAAAATACCCCCACAGGGTCAAATGACTG
1 GGTAAAATGATCGAAATA-CCCCATAGGGTAAAATGACTG
6913001 TTATAGCCTT
Statistics
Matches: 312, Mismatches: 39, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
52 2 0.01
53 46 0.15
54 219 0.70
55 43 0.14
56 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (53 bp):
GGTAAAATGATCGAAATACCCCATAGGGTAAAATGACTGAAATACCCCCATAG
Found at i:6913064 original size:25 final size:25
Alignment explanation
Indices: 6913010--6913064 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
6913000 GTTATAGCCT
* *
6913010 TATGTTATGTATGATTGATTTGTGC
1 TATGATATGTATGATTGATTTGAGC
6913035 TATGATATGTATGACTATGA-TTGAGC
1 TATGATATGTATGA-T-TGATTTGAGC
6913061 -ATGA
1 TATGA
6913065 CATTTTGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 17 0.65
26 6 0.23
27 3 0.12
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.44
Consensus pattern (25 bp):
TATGATATGTATGATTGATTTGAGC
Found at i:6913257 original size:26 final size:26
Alignment explanation
Indices: 6913203--6913257 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
6913193 TTTGCCATAT
* * * *
6913203 ATACTGTTACTGGCAGTTTTACTGTG
1 ATACTATTACTAGCAGCTTTACTGCG
*
6913229 ATACTATTACTAGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTACTGCG
6913255 ATA
1 ATA
6913258 TTGGTGTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (26 bp):
ATACTATTACTAGCAGCTTTACTGCG
Found at i:6913407 original size:28 final size:29
Alignment explanation
Indices: 6913369--6913474 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 29
6913359 ATTGTTACTG
* *
6913369 TATTGGGCTAAGACCCACACTGATT-CTA
1 TATTGGGCTAAGGCCCACACTGATTAATA
* *
6913397 TTTTGGGCTAAGGCGCACACTG-TTAATA
1 TATTGGGCTAAGGCCCACACTGATTAATA
* *
6913425 TATTGGGCTAAGGCCCACACTGA-TACTG
1 TATTGGGCTAAGGCCCACACTGATTAATA
* *
6913453 TATTAGGCTAAGGCCTACACTG
1 TATTGGGCTAAGGCCCACACTG
6913475 TACTGTCACT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
27 2 0.03
28 64 0.97
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (29 bp):
TATTGGGCTAAGGCCCACACTGATTAATA
Found at i:6913447 original size:56 final size:56
Alignment explanation
Indices: 6913355--6913475 Score: 154
Period size: 56 Copynumber: 2.2 Consensus size: 56
6913345 CATTATTGCA
* * * * * *
6913355 CTACATTGTTACTGTATTGGGCTAAGACCCACACTGATTCTATTTTGGGCTAAGGC
1 CTACACTGTTAATATATTGGGCTAAGACCCACACTGATACTATATTAGGCTAAGGC
* *
6913411 GC-ACACTGTTAATATATTGGGCTAAGGCCCACACTGATACTGTATTAGGCTAAGGC
1 -CTACACTGTTAATATATTGGGCTAAGACCCACACTGATACTATATTAGGCTAAGGC
6913467 CTACACTGT
1 CTACACTGT
6913476 ACTGTCACTG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 1 0.02
56 53 0.96
57 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (56 bp):
CTACACTGTTAATATATTGGGCTAAGACCCACACTGATACTATATTAGGCTAAGGC
Found at i:6914785 original size:16 final size:15
Alignment explanation
Indices: 6914760--6914789 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6914750 ATTAAATTAA
6914760 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
6914775 TTAATCTAAATGCAA
1 TTAA-CTAAATGCAA
6914790 ATGAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:6917492 original size:46 final size:46
Alignment explanation
Indices: 6917425--6917522 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
6917415 CTTTATATGT
* *
6917425 GAATCATATTTATTTTTGGTTTAACACAGTGGCATACTTAACATGC
1 GAATCATATTTATTTTTGGTTTAACAAAGTGGCATACTTAACATAC
* *
6917471 GAATCATCTTTATTTTTGGTTTAACAAAGTGGCATACTTAATATAC
1 GAATCATATTTATTTTTGGTTTAACAAAGTGGCATACTTAACATAC
6917517 GAATCA
1 GAATCA
6917523 GAATCAGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (46 bp):
GAATCATATTTATTTTTGGTTTAACAAAGTGGCATACTTAACATAC
Found at i:6921398 original size:95 final size:95
Alignment explanation
Indices: 6921289--6921498 Score: 411
Period size: 95 Copynumber: 2.2 Consensus size: 95
6921279 TGTTATTGAT
6921289 AATTTTAAATTCATTATATACTGACATTTTGAATCTACTATATTTATTTATTTTGTTTTGTTTTT
1 AATTTTAAATTCATTATATACTGACATTTTGAATCTACTATATTTATTTATTTTGTTTTGTTTTT
6921354 TCTTTTTTGTTCAAATTTTATTTAAGCTCC
66 TCTTTTTTGTTCAAATTTTATTTAAGCTCC
6921384 AATTTTAAATTCATTATATACTGACATTTTGAATCTACTATATTTATTTATTTTGTTTTGTTTTT
1 AATTTTAAATTCATTATATACTGACATTTTGAATCTACTATATTTATTTATTTTGTTTTGTTTTT
6921449 TCTTTTTTGTTCAAATTTTATTTAAGCTCC
66 TCTTTTTTGTTCAAATTTTATTTAAGCTCC
6921479 AATTTTAAATTCATTGATAT
1 AATTTTAAATTCATT-ATAT
6921499 TTTTTTATAG
Statistics
Matches: 114, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 110 0.96
96 4 0.04
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (95 bp):
AATTTTAAATTCATTATATACTGACATTTTGAATCTACTATATTTATTTATTTTGTTTTGTTTTT
TCTTTTTTGTTCAAATTTTATTTAAGCTCC
Found at i:6921722 original size:19 final size:21
Alignment explanation
Indices: 6921688--6921737 Score: 77
Period size: 19 Copynumber: 2.4 Consensus size: 21
6921678 AATACATTAT
6921688 TTTTTTAAATTATTATCAATA
1 TTTTTTAAATTATTATCAATA
6921709 TTTTTTAAA-T-TTATCAATA
1 TTTTTTAAATTATTATCAATA
6921728 TTGTTTTAAA
1 TT-TTTTAAA
6921738 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.39
20 8 0.29
21 9 0.32
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTTAAATTATTATCAATA
Found at i:6930280 original size:22 final size:21
Alignment explanation
Indices: 6930255--6930303 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 21
6930245 ACATTATTTT
6930255 TTTTAAAATTATTATCAATA-TG
1 TTTTAAAA-T-TTATCAATATTG
6930277 TTTT-AAATTTATCAATATTG
1 TTTTAAAATTTATCAATATTG
6930297 TTTTAAA
1 TTTTAAA
6930304 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 9 0.36
20 7 0.28
21 5 0.20
22 4 0.16
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTAAAATTTATCAATATTG
Found at i:6930290 original size:19 final size:20
Alignment explanation
Indices: 6930266--6930304 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6930256 TTTAAAATTA
6930266 TTATCAATA-TGTTTTAAAT
1 TTATCAATATTGTTTTAAAT
6930285 TTATCAATATTGTTTTAAAT
1 TTATCAATATTGTTTTAAAT
6930305 ATATATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTATCAATATTGTTTTAAAT
Found at i:6932804 original size:21 final size:21
Alignment explanation
Indices: 6932773--6932821 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
6932763 ATGTTTGATT
6932773 ACAAGCACCTTAAGTATTGAAA
1 ACAA-CACCTTAAGTATTGAAA
6932795 ACAACACCTTAAGTATTGAAA
1 ACAACACCTTAAGTATTGAAA
6932816 ACAACA
1 ACAACA
6932822 GATCAACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.49, C:0.20, G:0.10, T:0.20
Consensus pattern (21 bp):
ACAACACCTTAAGTATTGAAA
Found at i:6940913 original size:23 final size:23
Alignment explanation
Indices: 6940887--6940961 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
6940877 AGAAACCTTC
6940887 CAAGCCCAAAATCAATTTGAGCT
1 CAAGCCCAAAATCAATTTGAGCT
* * *
6940910 CAAGCCCAAGAT-AA-ATAAGCTTT
1 CAAGCCCAAAATCAATTTGAGC--T
6940933 CAAGCCCAAAATCAATTTGAGCT
1 CAAGCCCAAAATCAATTTGAGCT
6940956 CAAGCC
1 CAAGCC
6940962 TAAGATAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.10
22 2 0.05
23 30 0.71
24 2 0.05
25 4 0.10
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (23 bp):
CAAGCCCAAAATCAATTTGAGCT
Found at i:6941022 original size:11 final size:11
Alignment explanation
Indices: 6941006--6941031 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6940996 AAATTTATGG
6941006 AAATATTTTAT
1 AAATATTTTAT
6941017 AAATATTTTAT
1 AAATATTTTAT
6941028 AAAT
1 AAAT
6941032 TATAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
AAATATTTTAT
Found at i:6947177 original size:5 final size:5
Alignment explanation
Indices: 6947167--6947194 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
6947157 GGTAGTTTGA
6947167 TAAAT TAAAT TAAAT TAAAT TAAAT TAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAA
6947195 GCAATAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TAAAT
Found at i:6948943 original size:20 final size:20
Alignment explanation
Indices: 6948918--6948966 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
6948908 AAGCTTATAC
*
6948918 TAAGTAAATGGAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
6948938 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
6948958 TAAGTAAAT
1 TAAGTAAAT
6948967 TGAGTGGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.22
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:6961289 original size:23 final size:21
Alignment explanation
Indices: 6961237--6961281 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
6961227 TTTAAAATCT
6961237 TATGTAATAAATATATTATGA
1 TATGTAATAAATATATTATGA
6961258 TATGTAATAAATATATTATGA
1 TATGTAATAAATATATTATGA
6961279 TAT
1 TAT
6961282 ATGTAATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (21 bp):
TATGTAATAAATATATTATGA
Found at i:6962637 original size:16 final size:16
Alignment explanation
Indices: 6962616--6962647 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6962606 GAAATTAAAG
*
6962616 AAAAATATTATAGAAT
1 AAAAATATTAAAGAAT
6962632 AAAAATATTAAAGAAT
1 AAAAATATTAAAGAAT
6962648 GTATATATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AAAAATATTAAAGAAT
Found at i:6964040 original size:13 final size:13
Alignment explanation
Indices: 6964022--6964052 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
6964012 AAACTGGAGA
*
6964022 TTTATTTTTTTAT
1 TTTATTTTATTAT
6964035 TTTATTTTATTAT
1 TTTATTTTATTAT
6964048 TTTAT
1 TTTAT
6964053 GTATGTGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:6967372 original size:16 final size:16
Alignment explanation
Indices: 6967351--6967381 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6967341 ATGAGAATGG
6967351 TTTATTGAGTCTAGTT
1 TTTATTGAGTCTAGTT
6967367 TTTATTGAGTCTAGT
1 TTTATTGAGTCTAGT
6967382 CTCATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (16 bp):
TTTATTGAGTCTAGTT
Found at i:6969170 original size:26 final size:26
Alignment explanation
Indices: 6969134--6969195 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
6969124 CCTGTAAGTG
6969134 TTCTGAAACTGATACATGCTATGATA
1 TTCTGAAACTGATACATGCTATGATA
* *
6969160 TTCTGAAACTGATATATGTTATGATA
1 TTCTGAAACTGATACATGCTATGATA
6969186 TTCTGAAACT
1 TTCTGAAACT
6969196 ACTGTAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39
Consensus pattern (26 bp):
TTCTGAAACTGATACATGCTATGATA
Found at i:6972483 original size:105 final size:105
Alignment explanation
Indices: 6972301--6972517 Score: 409
Period size: 105 Copynumber: 2.1 Consensus size: 105
6972291 TAAATAGCTA
6972301 TAGAATTGAAAAGTATGAGCACTTGCATGGTAATTATACCAATAGAAAAGTGAGGAGACAAAGAT
1 TAGAATTGAAAAGTATGAGCACTTGCATGGTAATTATACCAATAGAAAAGTGAGGAGACAAAGAT
*
6972366 GCACATGTAGTAGGTGGATTTGGTGAAGTTATTAGAAGGC
66 GCACATGTAGTAGGTGGATTTGGTGAAGTTATTAAAAGGC
6972406 TAGAATTGAAAAGTATGAGCACTTGCATGGTAATTATACCAATAGAAAAGTGAGGAGACAAAGAT
1 TAGAATTGAAAAGTATGAGCACTTGCATGGTAATTATACCAATAGAAAAGTGAGGAGACAAAGAT
*
6972471 GCACATGTAGTAGGTGGATTTGGTGAAGTTATTAAAAGGT
66 GCACATGTAGTAGGTGGATTTGGTGAAGTTATTAAAAGGC
6972511 TA-AATTG
1 TAGAATTG
6972518 GTAAATAAGT
Statistics
Matches: 110, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
104 5 0.05
105 105 0.95
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.27
Consensus pattern (105 bp):
TAGAATTGAAAAGTATGAGCACTTGCATGGTAATTATACCAATAGAAAAGTGAGGAGACAAAGAT
GCACATGTAGTAGGTGGATTTGGTGAAGTTATTAAAAGGC
Found at i:6973551 original size:51 final size:51
Alignment explanation
Indices: 6973382--6973560 Score: 256
Period size: 51 Copynumber: 3.5 Consensus size: 51
6973372 ACTAGTGACT
* * *
6973382 CAAGTGTGGTACTATGTGACGGCCACTTTGAGAAG-AGATAGC-TTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
6973431 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
6973483 CAAGTGTGGTACCATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
6973534 CAAGGGTGGTACTATGTGCAGGCCACT
1 CAAGTGTGGTACTATGTGAAGGCCACT
6973561 AGGTATCTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 33 0.28
50 1 0.01
51 44 0.37
52 40 0.34
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:6978460 original size:50 final size:50
Alignment explanation
Indices: 6978337--6978571 Score: 206
Period size: 50 Copynumber: 4.6 Consensus size: 50
6978327 GGGAATGAGA
* **
6978337 TCCCATGTAATACCATGTCTGGGACATGGCATTGGCATTATTGATGTTATGAGAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAAG
* *
6978393 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
** * * * * *
6978443 TCCCCCGTAAGACCATGTCTCGGACATGGCATGGGCACCGATACGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
* * * * * *
6978493 TCCCATGTAAGACCATATCTGGGATATGGCATTGG--CGGTACAAGA-AACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAA-G
*
6978542 TCCCATGTAAGACCATGTCTAGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
6978572 TTTGACATGT
Statistics
Matches: 150, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
48 4 0.03
49 31 0.21
50 77 0.51
52 1 0.01
53 3 0.02
56 34 0.23
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
Found at i:6978830 original size:20 final size:20
Alignment explanation
Indices: 6978780--6978818 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6978770 TGAGTTATTT
* *
6978780 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGAAAGTAAATAAAC
6978800 AAGTAAGAAAGTAAATAAA
1 AAGTAAGAAAGTAAATAAA
6978819 GAAGAAGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAATAAAC
Found at i:6981722 original size:16 final size:17
Alignment explanation
Indices: 6981686--6981723 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
6981676 TCGCCTGACA
*
6981686 ATACTATTCACCAGGTG
1 ATACTATTCACCAGATG
6981703 ATACTATTCACCA-ATG
1 ATACTATTCACCAGATG
6981719 ATACT
1 ATACT
6981724 GCCCGCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (17 bp):
ATACTATTCACCAGATG
Found at i:6986080 original size:42 final size:43
Alignment explanation
Indices: 6986000--6986084 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
6985990 TTTTATCCTA
* * **
6986000 AAAAAATAATTTAAAAAGAGGAGAAGATAATCTTGGGTTGTTG
1 AAAAAATAATTGAAAAAGAGGAAAAGATAATAATGGGTTGTTG
*
6986043 AAAAAATAATTGAAAAAGAGGAAAATATAA-AATGGGTTGTTG
1 AAAAAATAATTGAAAAAGAGGAAAAGATAATAATGGGTTGTTG
6986085 GATTTACCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 10 0.27
43 27 0.73
ACGTcount: A:0.51, C:0.01, G:0.22, T:0.26
Consensus pattern (43 bp):
AAAAAATAATTGAAAAAGAGGAAAAGATAATAATGGGTTGTTG
Found at i:6989170 original size:19 final size:19
Alignment explanation
Indices: 6989146--6989184 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
6989136 CAAGACCTAC
6989146 TACGTTACGTTGCAACTAG
1 TACGTTACGTTGCAACTAG
6989165 TACGTTACGTTGCAACTAG
1 TACGTTACGTTGCAACTAG
6989184 T
1 T
6989185 TAATTGATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (19 bp):
TACGTTACGTTGCAACTAG
Found at i:6992484 original size:35 final size:35
Alignment explanation
Indices: 6992437--6992538 Score: 127
Period size: 34 Copynumber: 2.9 Consensus size: 35
6992427 TCACTAATTA
6992437 TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAC-
1 TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAACG
* * * *
6992471 TGTCGTCAGTTTATTTGACTAGTGCTGGGCAC-ACG
1 T-TCGTCGGTTTATCTGACTAGCGCTGGGCGCAACG
* *
6992506 TTCGTCGGTTTATGTGACTAGCACTGGGCGCAA
1 TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAA
6992539 ATACTGTTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
34 28 0.50
35 28 0.50
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (35 bp):
TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAACG
Found at i:6992500 original size:74 final size:73
Alignment explanation
Indices: 6992378--6992616 Score: 211
Period size: 74 Copynumber: 3.3 Consensus size: 73
6992368 AGATTTGTTC
* * * *
6992378 GACTAGCGCTGGGTGCAAATATCGTTAGTTTATCCAACTAGAGTTGGGCTCACTAATTATTCGTC
1 GACTAGCGCTGGGCGCAAAT-TCGTTAGTTTATCCGACTAGTGATGGGCTCACTAATTATTCGTC
6992443 GGTTTATCT
65 GGTTTATCT
* * ** * **
6992452 GACTAGCGCTGGGCGCAACTGTCGTCAGTTTATTTGACTAGTGCTGGG--CAC--A-CGTTCGTC
1 GACTAGCGCTGGGCGCAAAT-TCGTTAGTTTATCCGACTAGTGATGGGCTCACTAATTATTCGTC
*
6992512 GGTTTATGT
65 GGTTTATCT
* * * *
6992521 GACTAGCACTGGGCGCAAATACTGTTGGTTTATCCGACTAGAT-ATGGGCTCACTAATTATTTGT
1 GACTAGCGCTGGGCGCAAATTC-GTTAGTTTATCCGACTAG-TGATGGGCTCACTAATTATTCGT
*
6992585 CGGTTTATCC
64 CGGTTTATCT
* ** *
6992595 AACTAGTTCTGGGTGCAAATTC
1 GACTAGCGCTGGGCGCAAATTC
6992617 TTTCGCGGAT
Statistics
Matches: 128, Mismatches: 30, Indels: 14
0.74 0.17 0.08
Matches are distributed among these distances:
68 1 0.01
69 50 0.39
70 2 0.02
71 3 0.02
72 3 0.02
73 1 0.01
74 68 0.53
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.33
Consensus pattern (73 bp):
GACTAGCGCTGGGCGCAAATTCGTTAGTTTATCCGACTAGTGATGGGCTCACTAATTATTCGTCG
GTTTATCT
Found at i:6992517 original size:34 final size:34
Alignment explanation
Indices: 6992437--6992561 Score: 117
Period size: 35 Copynumber: 3.6 Consensus size: 34
6992427 TCACTAATTA
*
6992437 TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAC
1 TTCGTCGGTTTATCTGACTAGCGCTGGGCACAAC
* * *
6992471 TGTCGTCAGTTTATTTGACTAGTGCTGGGCAC-AC
1 T-TCGTCGGTTTATCTGACTAGCGCTGGGCACAAC
* * * *
6992505 GTTCGTCGGTTTATGTGACTAGCACTGGGCGCAAA
1 -TTCGTCGGTTTATCTGACTAGCGCTGGGCACAAC
* * *
6992540 TACTGTTGGTTTATCCGACTAG
1 TTC-GTCGGTTTATCTGACTAG
6992562 ATATGGGCTC
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
34 30 0.41
35 43 0.59
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.33
Consensus pattern (34 bp):
TTCGTCGGTTTATCTGACTAGCGCTGGGCACAAC
Found at i:6992569 original size:69 final size:69
Alignment explanation
Indices: 6992437--6992569 Score: 153
Period size: 69 Copynumber: 1.9 Consensus size: 69
6992427 TCACTAATTA
* * * ** *
6992437 TTCGTCGGTTTATCTGACTAGCGCTGGGCGCAACTGTCGTCAGTTTATTTGACTAGTGCTGGGCA
1 TTCGTCGGTTTATCTGACTAGCACTGGGCGCAAATCTCGTCAGTTTATCCGACTAGTGATGGGCA
6992502 CACG
66 CACG
* **
6992506 TTCGTCGGTTTATGTGACTAGCACTGGGCGCAAATACT-GTTGGTTTATCCGACTAGAT-ATGGG
1 TTCGTCGGTTTATCTGACTAGCACTGGGCGCAAAT-CTCGTCAGTTTATCCGACTAG-TGATGGG
6992569 C
64 C
6992570 TCACTAATTA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
69 51 0.96
70 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (69 bp):
TTCGTCGGTTTATCTGACTAGCACTGGGCGCAAATCTCGTCAGTTTATCCGACTAGTGATGGGCA
CACG
Found at i:7001688 original size:15 final size:15
Alignment explanation
Indices: 7001654--7001691 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7001644 ATGATTAATA
*
7001654 AATAA-TAAAAAAAT
1 AATAATTAAAAAAAC
7001668 AA-AATTAAAAAAAC
1 AATAATTAAAAAAAC
7001682 AATAATTAAA
1 AATAATTAAA
7001692 TCGAAGATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 12 0.57
15 7 0.33
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAATTAAAAAAAC
Found at i:7002688 original size:13 final size:13
Alignment explanation
Indices: 7002665--7002697 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7002655 TTGGACTAGG
7002665 TGTAA-TTGGGTC
1 TGTAATTTGGGTC
*
7002677 TGTAATTTGGGTT
1 TGTAATTTGGGTC
7002690 TGTAATTT
1 TGTAATTT
7002698 TTGGCTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (13 bp):
TGTAATTTGGGTC
Found at i:7013885 original size:48 final size:48
Alignment explanation
Indices: 7013814--7013909 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
7013804 TTCTCTCTTG
*
7013814 TGCTCATGGCTACAGAAGGTGTTCCAACAGTTGACACACCTCGGCATT
1 TGCTCATGGCTACAGAAGGTGTTCCAACAGTTGACACACCCCGGCATT
7013862 TGCTCATGGCTACAGAAGGTGTTCCAACAGTTGACACACCCCGGCATT
1 TGCTCATGGCTACAGAAGGTGTTCCAACAGTTGACACACCCCGGCATT
7013910 CTAGCAACTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (48 bp):
TGCTCATGGCTACAGAAGGTGTTCCAACAGTTGACACACCCCGGCATT
Found at i:7017730 original size:18 final size:18
Alignment explanation
Indices: 7017703--7017745 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
7017693 TAGTTGTAAA
7017703 AGTT-AGTCAAGATATTT
1 AGTTAAGTCAAGATATTT
7017720 AGTTAAGTCAAGATATTT
1 AGTTAAGTCAAGATATTT
7017738 AGTTAAGT
1 AGTTAAGT
7017746 TCAATTGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.40
Consensus pattern (18 bp):
AGTTAAGTCAAGATATTT
Found at i:7019367 original size:18 final size:18
Alignment explanation
Indices: 7019344--7019381 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7019334 ATCAAATCTT
7019344 AAAAGCAAAAACAATAGC
1 AAAAGCAAAAACAATAGC
7019362 AAAAGCAAAAACAATAGC
1 AAAAGCAAAAACAATAGC
7019380 AA
1 AA
7019382 CTAACTCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.68, C:0.16, G:0.11, T:0.05
Consensus pattern (18 bp):
AAAAGCAAAAACAATAGC
Found at i:7023974 original size:19 final size:19
Alignment explanation
Indices: 7023950--7023987 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7023940 CTAAAAATAT
*
7023950 TAAATAATTAATATTTATG
1 TAAATAACTAATATTTATG
7023969 TAAATAACTAATATTTATG
1 TAAATAACTAATATTTATG
7023988 GACCGACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (19 bp):
TAAATAACTAATATTTATG
Found at i:7027356 original size:9 final size:9
Alignment explanation
Indices: 7027342--7027366 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7027332 GCTTGCTGTC
7027342 GAGAAATAA
1 GAGAAATAA
7027351 GAGAAATAA
1 GAGAAATAA
7027360 GAGAAAT
1 GAGAAAT
7027367 GATGCGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (9 bp):
GAGAAATAA
Found at i:7041446 original size:25 final size:25
Alignment explanation
Indices: 7041382--7041447 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
7041372 TCCTATACAT
* *
7041382 GTATGCTAATACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
7041407 GTATGCTCACTCGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
7041432 GTATGCTCTCACGAGC
1 GTATGCTCACACGAGC
7041448 CGTGGGTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:7045848 original size:18 final size:19
Alignment explanation
Indices: 7045822--7045858 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7045812 TACTAAGAAG
7045822 CAATGACCTACAAACATGA
1 CAATGACCTACAAACATGA
*
7045841 CAAT-ACCTACAAGCATGA
1 CAATGACCTACAAACATGA
7045859 AAGGAAAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.46, C:0.27, G:0.11, T:0.16
Consensus pattern (19 bp):
CAATGACCTACAAACATGA
Found at i:7046056 original size:15 final size:15
Alignment explanation
Indices: 7046021--7046063 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
7046011 TTTCTGTCGT
7046021 GATTTTTAGTTTT-A
1 GATTTTTAGTTTTAA
*
7046035 GACTTTTAGTTTTAA
1 GATTTTTAGTTTTAA
* *
7046050 GTTTTTTATTTTTA
1 GATTTTTAGTTTTA
7046064 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.21, C:0.02, G:0.12, T:0.65
Consensus pattern (15 bp):
GATTTTTAGTTTTAA
Found at i:7046115 original size:13 final size:13
Alignment explanation
Indices: 7046097--7046121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7046087 TACGATTGGG
7046097 TTGGGTTTATATA
1 TTGGGTTTATATA
7046110 TTGGGTTTATAT
1 TTGGGTTTATAT
7046122 TGGATTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (13 bp):
TTGGGTTTATATA
Found at i:7046976 original size:26 final size:26
Alignment explanation
Indices: 7046940--7046996 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
7046930 GATGTAATTT
*
7046940 GTTATGCCTCCAATTATTACAAGGTA
1 GTTATGCCTCCAATTAGTACAAGGTA
7046966 GTTATGCCTCCAATTAGTACAAGGTA
1 GTTATGCCTCCAATTAGTACAAGGTA
7046992 GTTAT
1 GTTAT
7046997 TCCTGAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (26 bp):
GTTATGCCTCCAATTAGTACAAGGTA
Found at i:7048174 original size:8 final size:8
Alignment explanation
Indices: 7048143--7048175 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
7048133 TTTTAAATAA
7048143 TATTTTAT
1 TATTTTAT
7048151 TATTTTAT
1 TATTTTAT
7048159 TATTTTAT
1 TATTTTAT
7048167 TATTTTAT
1 TATTTTAT
7048175 T
1 T
7048176 GTTTAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:7050172 original size:29 final size:30
Alignment explanation
Indices: 7050115--7050172 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7050105 ATTTTACGAG
*
7050115 TCTAGGGGCAAAATCGTAATTTTGTCAAAC
1 TCTAGGGGCAAAATCGTAAATTTGTCAAAC
7050145 TCTAGGGGCAAAAT-GTAAAATTT-TCAAA
1 TCTAGGGGCAAAATCGT-AAATTTGTCAAA
7050173 GTGTGATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (30 bp):
TCTAGGGGCAAAATCGTAAATTTGTCAAAC
Found at i:7050635 original size:75 final size:75
Alignment explanation
Indices: 7050512--7051363 Score: 1704
Period size: 75 Copynumber: 11.4 Consensus size: 75
7050502 TTTGAATATA
7050512 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050577 TTTAAATGTG
66 TTTAAATGTG
7050587 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050652 TTTAAATGTG
66 TTTAAATGTG
7050662 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050727 TTTAAATGTG
66 TTTAAATGTG
7050737 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050802 TTTAAATGTG
66 TTTAAATGTG
7050812 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050877 TTTAAATGTG
66 TTTAAATGTG
7050887 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7050952 TTTAAATGTG
66 TTTAAATGTG
7050962 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7051027 TTTAAATGTG
66 TTTAAATGTG
7051037 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7051102 TTTAAATGTG
66 TTTAAATGTG
7051112 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7051177 TTTAAATGTG
66 TTTAAATGTG
7051187 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7051252 TTTAAATGTG
66 TTTAAATGTG
7051262 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
7051327 TTTAAATGTG
66 TTTAAATGTG
7051337 AAGGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
7051364 CAAGGGGTTG
Statistics
Matches: 777, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 777 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.34
Consensus pattern (75 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT
TTTAAATGTG
Found at i:7051385 original size:102 final size:98
Alignment explanation
Indices: 7051265--7051461 Score: 297
Period size: 102 Copynumber: 2.0 Consensus size: 98
7051255 AAATGTGAAG
*
7051265 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGATTCCACCGTAT-TT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTG-----ACCGTATCAT
*
7051329 TAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
61 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
* *
7051367 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGACCGTATCATTGAAT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGACCGTATCATTAAAT
*
7051432 GTGAAAGGGGTTGCTAAGTGTTGATTCCCC
66 GTGAAAGGGGTTGCTAAGTGCTGATTCCCC
7051462 GAATCACTGG
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
97 7 0.08
98 33 0.37
102 49 0.55
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (98 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTACTAAGTGCTGACCGTATCATTAAAT
GTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:7058920 original size:12 final size:13
Alignment explanation
Indices: 7058889--7058928 Score: 55
Period size: 12 Copynumber: 3.0 Consensus size: 13
7058879 ATCTGCCAGA
7058889 GAAATTAGAAGATCT
1 GAAATT-GAA-ATCT
7058904 GAAATTGAAAT-T
1 GAAATTGAAATCT
7058916 GAAATTGAAATCT
1 GAAATTGAAATCT
7058929 TGGGATAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
13 3 0.12
14 3 0.12
15 6 0.25
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.30
Consensus pattern (13 bp):
GAAATTGAAATCT
Found at i:7062902 original size:7 final size:7
Alignment explanation
Indices: 7062890--7062918 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
7062880 TGGATGGTAT
7062890 TGCTGAC
1 TGCTGAC
7062897 TGCTGAC
1 TGCTGAC
7062904 TGCTGAC
1 TGCTGAC
7062911 TGCTGAC
1 TGCTGAC
7062918 T
1 T
7062919 TTGGACGCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.31
Consensus pattern (7 bp):
TGCTGAC
Found at i:7067009 original size:236 final size:237
Alignment explanation
Indices: 7066722--7067188 Score: 785
Period size: 236 Copynumber: 2.0 Consensus size: 237
7066712 TTCACCCTGT
*
7066722 TTTTTCCAGTCTAATTGATAAATCTATTCCAATTGATCTCTCAATGAGTCTTCTGAAACTTCTTC
1 TTTTTCCAGTCTAATTGATAAATCTATTACAATTGATCTCTCAATGAGTCTTCTGAAACTTCTTC
* ** *
7066787 CTTTGTTATTT-TTCCTAAATCGAAAATGTAAGAATCACCATCGCTTGAAAGTTCCTCACTC-TT
66 CTTTGTTATTTCGTCC-AAATAAAAAATGTAAGAATCACCATCGCTTGAAACTTCCTCACTCTTT
*
7066850 TTTTAAATTATCCTCATCAACCATTGATTCTTGTTTAGTAACATTCGTTAGCTCAGTCACCACTT
130 TTTTAAATTATCCTCATCAACCATTGATTCTTGTTTAGTAACATTCATTAGCTCAGTCACCACTT
7066915 TTGGTTCTCTAATCAATCCTCAAGCGTGATCGTTGTTACTTAG
195 TTGGTTCTCTAATCAATCCTCAAGCGTGATCGTTGTTACTTAG
7066958 TTTTTCCAGTCTAATTGATAAATCTATTACAATTGATCTCTCAATGAGTCTTCTGAAACTTCTTC
1 TTTTTCCAGTCTAATTGATAAATCTATTACAATTGATCTCTCAATGAGTCTTCTGAAACTTCTTC
*
7067023 CTTTGTTATTTCGTCCAAATAAAAAATGTAGGAATCACCATCGCTTGAAACTTCCTCACTCTTTT
66 CTTTGTTATTTCGTCCAAATAAAAAATGTAAGAATCACCATCGCTTGAAACTTCCTCACTCTTTT
* * * * *
7067088 TTTGAATTATCCTTATCATCTATTGATTCTTGTTTAGTGACATTCATTAGCTCAGTCACCACTTT
131 TTTAAATTATCCTCATCAACCATTGATTCTTGTTTAGTAACATTCATTAGCTCAGTCACCACTTT
* *
7067153 TGGTTCTCTAATCAGTCCTCAAGTGTGATCGTTGTT
196 TGGTTCTCTAATCAATCCTCAAGCGTGATCGTTGTT
7067189 GCTTGCTTTT
Statistics
Matches: 215, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
236 116 0.54
237 99 0.46
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.41
Consensus pattern (237 bp):
TTTTTCCAGTCTAATTGATAAATCTATTACAATTGATCTCTCAATGAGTCTTCTGAAACTTCTTC
CTTTGTTATTTCGTCCAAATAAAAAATGTAAGAATCACCATCGCTTGAAACTTCCTCACTCTTTT
TTTAAATTATCCTCATCAACCATTGATTCTTGTTTAGTAACATTCATTAGCTCAGTCACCACTTT
TGGTTCTCTAATCAATCCTCAAGCGTGATCGTTGTTACTTAG
Found at i:7073525 original size:20 final size:20
Alignment explanation
Indices: 7073500--7073542 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7073490 TTATTACATC
7073500 TTTTAAATATGACTTAAAAG
1 TTTTAAATATGACTTAAAAG
* * *
7073520 TTTTAATTGTGTCTTAAAAG
1 TTTTAAATATGACTTAAAAG
7073540 TTT
1 TTT
7073543 GATTGAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.49
Consensus pattern (20 bp):
TTTTAAATATGACTTAAAAG
Found at i:7075686 original size:12 final size:12
Alignment explanation
Indices: 7075671--7075729 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
7075661 AAATGATATA
7075671 GAAAAAGAGTGT
1 GAAAAAGAGTGT
*
7075683 GAAAAAGAATGT
1 GAAAAAGAGTGT
**
7075695 GAAAGGGAGTGT
1 GAAAAAGAGTGT
*
7075707 GAAAAAAAAGTGT
1 G-AAAAAGAGTGT
7075720 GAAACAAGAG
1 GAAA-AAGAG
7075730 GAGAGAAAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
12 24 0.65
13 13 0.35
ACGTcount: A:0.53, C:0.02, G:0.32, T:0.14
Consensus pattern (12 bp):
GAAAAAGAGTGT
Found at i:7075698 original size:24 final size:25
Alignment explanation
Indices: 7075671--7075729 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
7075661 AAATGATATA
*
7075671 GAAAAAGAGTGTGAAAAAGAA-TGT
1 GAAAAAGAGTGTGAAAAAAAAGTGT
**
7075695 GAAAGGGAGTGTGAAAAAAAAGTGT
1 GAAAAAGAGTGTGAAAAAAAAGTGT
7075720 GAAACAAGAG
1 GAAA-AAGAG
7075730 GAGAGAAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 18 0.64
25 7 0.25
26 3 0.11
ACGTcount: A:0.53, C:0.02, G:0.32, T:0.14
Consensus pattern (25 bp):
GAAAAAGAGTGTGAAAAAAAAGTGT
Found at i:7079886 original size:57 final size:57
Alignment explanation
Indices: 7079799--7079991 Score: 223
Period size: 57 Copynumber: 3.3 Consensus size: 57
7079789 AATTTTCAAG
7079799 TCATTT-TC-ATTTTCA-TTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTT
1 TCATTTCTCTATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTT
* * * *
7079853 TCATTTCTCTATTTTCATTTTCATTTTGGAGAAAAACATAACCATTTCCATATGATT
1 TCATTTCTCTATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTT
*
7079910 TCGTTTCTTCATTTTCATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAAT-TATCT
1 TCATTTC-TC----T-ATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGT-T-T
*
7079974 CTCATTTCTCCATTTTCA
1 -TCATTTCTCTATTTTCA
7079992 CCTTTTCTAT
Statistics
Matches: 116, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
54 6 0.05
55 2 0.02
56 7 0.06
57 41 0.35
58 2 0.02
59 7 0.06
62 1 0.01
63 41 0.35
64 3 0.03
65 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.47
Consensus pattern (57 bp):
TCATTTCTCTATTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTT
Found at i:7079928 original size:6 final size:6
Alignment explanation
Indices: 7079917--7079942 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7079907 ATTTCGTTTC
7079917 TTCATT TTCATT TTCATT TTCATT TT
1 TTCATT TTCATT TTCATT TTCATT TT
7079943 GGAGAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (6 bp):
TTCATT
Found at i:7088277 original size:60 final size:54
Alignment explanation
Indices: 7088205--7088352 Score: 181
Period size: 54 Copynumber: 2.6 Consensus size: 54
7088195 CATCTTCAGA
* * *
7088205 TGAAGTGTTTTCTTCATCAGAATTATGACTAGTGACTTTTATATCTTCATCCTGATATGT
1 TGAAGTTTTTTCTTCATCAGAATTATAACTAGTAAC-TTT-TA---T-ATCCTGATATGT
*
7088265 TGAAGTTTTTTCTTCATCAG-ATTGATAACTAGTAACTTTTATATCCTGATCTGT
1 TGAAGTTTTTTCTTCATCAGAATT-ATAACTAGTAACTTTTATATCCTGATATGT
*
7088319 TGAAGTTTTTTCTTCATCAGATTTATAACTAGTA
1 TGAAGTTTTTTCTTCATCAGAATTATAACTAGTA
7088353 GCTTATAAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 10
0.84 0.05 0.10
Matches are distributed among these distances:
54 41 0.51
55 3 0.04
58 2 0.02
59 6 0.07
60 29 0.36
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (54 bp):
TGAAGTTTTTTCTTCATCAGAATTATAACTAGTAACTTTTATATCCTGATATGT
Found at i:7088595 original size:18 final size:18
Alignment explanation
Indices: 7088569--7088615 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7088559 GGACTGGAAA
7088569 TCATATTTTTGTT-GTTTT
1 TCATATTTTT-TTCGTTTT
*
7088587 TCATTTTTTTTTCGTTTT
1 TCATATTTTTTTCGTTTT
*
7088605 TTATGATTTTT
1 TCAT-ATTTTT
7088616 ATATTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.71
19 5 0.21
ACGTcount: A:0.11, C:0.06, G:0.09, T:0.74
Consensus pattern (18 bp):
TCATATTTTTTTCGTTTT
Found at i:7088836 original size:18 final size:19
Alignment explanation
Indices: 7088813--7088849 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7088803 CTATTTAAAT
7088813 CTAAATT-TTTAATTTCTC
1 CTAAATTATTTAATTTCTC
*
7088831 CTAAATTATTTACTTTCTC
1 CTAAATTATTTAATTTCTC
7088850 TTCTACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.27, C:0.19, G:0.00, T:0.54
Consensus pattern (19 bp):
CTAAATTATTTAATTTCTC
Found at i:7090489 original size:20 final size:20
Alignment explanation
Indices: 7090464--7090503 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7090454 AAGATTGAAA
7090464 GATTCTTTTAATAAAGTATT
1 GATTCTTTTAATAAAGTATT
7090484 GATTCTTTTAATAAAGTATT
1 GATTCTTTTAATAAAGTATT
7090504 TTAGACCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (20 bp):
GATTCTTTTAATAAAGTATT
Found at i:7091080 original size:24 final size:24
Alignment explanation
Indices: 7091053--7091099 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7091043 ATAGATATAG
7091053 ATTAAAGAAAATCTATATTTTAAA
1 ATTAAAGAAAATCTATATTTTAAA
* * *
7091077 ATTATAGTAATTCTATATTTTAA
1 ATTAAAGAAAATCTATATTTTAA
7091100 TATACTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (24 bp):
ATTAAAGAAAATCTATATTTTAAA
Found at i:7093653 original size:23 final size:23
Alignment explanation
Indices: 7093627--7093678 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
7093617 TTATTTTTAA
*
7093627 ATTTTGAATTATTTACAGATAAT
1 ATTTAGAATTATTTACAGATAAT
**
7093650 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTACAGATAAT
7093673 ATTTAG
1 ATTTAG
7093679 TGATAATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTACAGATAAT
Found at i:7093654 original size:13 final size:13
Alignment explanation
Indices: 7093636--7093715 Score: 73
Period size: 13 Copynumber: 6.6 Consensus size: 13
7093626 AATTTTGAAT
*
7093636 TATTTACAGATAA
1 TATTTAGAGATAA
7093649 TATTTAGA-AT--
1 TATTTAGAGATAA
*
7093659 TATTTAGTGATAA
1 TATTTAGAGATAA
*
7093672 TATTTAGTGATAA
1 TATTTAGAGATAA
7093685 TATTTAG-GAT--
1 TATTTAGAGATAA
* *
7093695 TCTTTAGTGATAA
1 TATTTAGAGATAA
7093708 TATTTAGA
1 TATTTAGA
7093716 AAAAATCTAG
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
10 13 0.23
11 5 0.09
12 5 0.09
13 33 0.59
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.46
Consensus pattern (13 bp):
TATTTAGAGATAA
Found at i:7093684 original size:36 final size:36
Alignment explanation
Indices: 7093644--7093714 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
7093634 ATTATTTACA
7093644 GATAATATTTAGAATTATTTAGTGATAATATTTAGT
1 GATAATATTTAGAATTATTTAGTGATAATATTTAGT
* *
7093680 GATAATATTTAGGATTCTTTAGTGATAATATTTAG
1 GATAATATTTAGAATTATTTAGTGATAATATTTAG
7093715 AAAAAATCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (36 bp):
GATAATATTTAGAATTATTTAGTGATAATATTTAGT
Found at i:7100995 original size:13 final size:13
Alignment explanation
Indices: 7100979--7101022 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
7100969 TAAATTTTGA
7100979 AATATTTAGTGAT
1 AATATTTAGTGAT
7100992 AATATTTAG-GAT
1 AATATTTAGTGAT
7101004 --TATTTAGTGAT
1 AATATTTAGTGAT
7101015 AATATTTA
1 AATATTTA
7101023 AGAAATCTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.25
11 3 0.11
12 3 0.11
13 15 0.54
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.48
Consensus pattern (13 bp):
AATATTTAGTGAT
Found at i:7100998 original size:23 final size:23
Alignment explanation
Indices: 7100972--7101028 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
7100962 TTATTTTTAA
*
7100972 ATTTTGAAATATTTAGTGATAAT
1 ATTTAGAAATATTTAGTGATAAT
* *
7100995 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAAATATTTAGTGATAAT
7101018 ATTTAAGAAAT
1 ATTT-AGAAAT
7101029 CTAGCTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (23 bp):
ATTTAGAAATATTTAGTGATAAT
Found at i:7104815 original size:42 final size:42
Alignment explanation
Indices: 7104756--7104840 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
7104746 TTATCCTAAG
7104756 TATTCACGAGGTTCAAACAAGACTTTTTTCTCATATCAATCA
1 TATTCACGAGGTTCAAACAAGACTTTTTTCTCATATCAATCA
7104798 TATTCACGAGGTTCAAACAAGACTTTTTTCTCATATCAATCA
1 TATTCACGAGGTTCAAACAAGACTTTTTTCTCATATCAATCA
7104840 T
1 T
7104841 TTAACTTCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.36
Consensus pattern (42 bp):
TATTCACGAGGTTCAAACAAGACTTTTTTCTCATATCAATCA
Found at i:7113091 original size:38 final size:37
Alignment explanation
Indices: 7113041--7113224 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
7113031 ATAGTATTAT
*
7113041 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
7113078 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
7113118 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
7113160 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
7113198 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
7113225 TTTTTTTTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:7113140 original size:26 final size:26
Alignment explanation
Indices: 7113111--7113269 Score: 83
Period size: 26 Copynumber: 6.5 Consensus size: 26
7113101 TATATTTTTA
7113111 TTAAATTATATTTAATAATAATTATT
1 TTAAATTATATTTAATAATAATTATT
*
7113137 TTAAATTATA-TT-AT-AT-AGTATT
1 TTAAATTATATTTAATAATAATTATT
* * * *
7113159 ATATATTATGATTTTATTA-AATTCA-T
1 TTAAATTAT-ATTTAATAATAATT-ATT
* * **
7113185 ATAAGA--ATATTTAATATTAAGAATT
1 TTAA-ATTATATTTAATAATAATTATT
* * *
7113210 TT--ATTA-AATT-AT-ATATTTTTT
1 TTAAATTATATTTAATAATAATTATT
*
7113231 TTAAATTATATTTAATAATAATTATG
1 TTAAATTATATTTAATAATAATTATT
7113257 TTAAATTATATTT
1 TTAAATTATATTT
7113270 TATAGTATTA
Statistics
Matches: 96, Mismatches: 21, Indels: 32
0.64 0.14 0.21
Matches are distributed among these distances:
21 6 0.06
22 15 0.16
23 10 0.10
24 15 0.16
25 12 0.12
26 36 0.38
27 2 0.02
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (26 bp):
TTAAATTATATTTAATAATAATTATT
Found at i:7113162 original size:120 final size:120
Alignment explanation
Indices: 7113023--7113331 Score: 573
Period size: 120 Copynumber: 2.6 Consensus size: 120
7113013 ATTATTAATC
7113023 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
7113088 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
7113143 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
7113208 TTTTATTAAATTATATATTTTTTTTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* **
7113263 TATATTTTATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
7113328 TTTT
66 TTTT
7113332 TCTAATGATA
Statistics
Matches: 184, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 184 1.00
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.52
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:7113600 original size:16 final size:16
Alignment explanation
Indices: 7113579--7113620 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7113569 TTATTAAATT
*
7113579 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7113595 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7113610 AT-TATGTTTAA
1 ATATAT-TTTAA
7113621 ATATCTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7113605 original size:15 final size:15
Alignment explanation
Indices: 7113570--7113611 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7113560 TTAAGAATTT
*
7113570 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7113584 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7113598 TATTTAATAATAAT
1 TATTTAATTATAAT
7113612 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7113612 original size:120 final size:118
Alignment explanation
Indices: 7113473--7113721 Score: 308
Period size: 107 Copynumber: 2.2 Consensus size: 118
7113463 ATACCTGTGG
* * *
7113473 AAATATTTTTAATATTAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAA
1 AAATATATTTAATAATAATTATTT-AAATTATATTATATAGTATCATATATTATGATTTTAGTAA
* *
7113538 ATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATT
65 ATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
* *
7113592 ATAATATATTTAATAAT-A--A-TT--A-TGT-TTA-A-A-TATC-TATATTATGATTTGAGTAA
1 A-AATATATTTAATAATAATTATTTAAATTATATTATATAGTATCATATATTATGATTTTAGTAA
7113645 ATTCATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
65 ATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATATATTTTAATT
7113699 ATAATATATTTAATAATAATTAT
1 A-AATATATTTAATAATAATTAT
7113722 GTTTAAATAT
Statistics
Matches: 117, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
106 2 0.02
107 84 0.72
108 5 0.04
109 1 0.01
110 2 0.02
111 2 0.02
112 2 0.02
113 1 0.01
116 2 0.02
117 1 0.01
119 2 0.02
120 13 0.11
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (118 bp):
AAATATATTTAATAATAATTATTTAAATTATATTATATAGTATCATATATTATGATTTTAGTAAA
TTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATT
Found at i:7113637 original size:107 final size:108
Alignment explanation
Indices: 7113514--7113731 Score: 411
Period size: 107 Copynumber: 2.0 Consensus size: 108
7113504 TATTTTATAG
* *
7113514 TATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
7113579 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAA
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAA
7113622 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
7113686 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAA
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAA
7113729 TAT
1 TAT
7113732 GATTAAATTA
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 104 0.96
108 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (108 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAA
Found at i:7113707 original size:16 final size:16
Alignment explanation
Indices: 7113686--7113727 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7113676 TTATTAAATT
*
7113686 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7113702 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7113717 AT-TATGTTTAA
1 ATATAT-TTTAA
7113728 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7113712 original size:15 final size:15
Alignment explanation
Indices: 7113677--7113718 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7113667 TTAAGAATTT
*
7113677 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7113691 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7113705 TATTTAATAATAAT
1 TATTTAATTATAAT
7113719 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7113822 original size:157 final size:157
Alignment explanation
Indices: 7113661--7113977 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
7113651 ATAAGAATAT
*
7113661 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTATAATATATTTAATAATAATTATGTT
1 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
* * *
7113725 TAAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
*
7113790 ATAATAATTTACCAAAACAAATTTCTGC
130 ATAATAATTTACCAAAACAAATTTATGC
7113818 TAATTATAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTTT
7113883 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
7113948 TAATCATTTACCAAAACAATTTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
7113975 TAA
1 TAA
7113978 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:7114121 original size:16 final size:16
Alignment explanation
Indices: 7114100--7114167 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
7114090 GATTTGCTAT
7114100 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7114116 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
7114132 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
7114148 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7114164 TACA
1 TACA
7114168 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7116127 original size:18 final size:17
Alignment explanation
Indices: 7116104--7116137 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7116094 TTATATATGT
7116104 ATAATAAATATATAAAAA
1 ATAATAAATAT-TAAAAA
*
7116122 ATAATAATTATTAAAA
1 ATAATAAATATTAAAA
7116138 TCTATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAAATATTAAAAA
Found at i:7116412 original size:5 final size:5
Alignment explanation
Indices: 7116402--7116429 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7116392 ACTATAAATC
7116402 TATGA TATGA TATGA TATGA TATGA TAT
1 TATGA TATGA TATGA TATGA TATGA TAT
7116430 AAAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (5 bp):
TATGA
Found at i:7116439 original size:15 final size:15
Alignment explanation
Indices: 7116403--7116446 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7116393 CTATAAATCT
* *
7116403 ATGATATGATATGAT
1 ATGATATGATATAAA
7116418 ATGATATGATATAAA
1 ATGATATGATATAAA
* *
7116433 ATTATATAATATAA
1 ATGATATGATATAA
7116447 TATAGAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (15 bp):
ATGATATGATATAAA
Found at i:7116449 original size:10 final size:10
Alignment explanation
Indices: 7116402--7116450 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
7116392 ACTATAAATC
*
7116402 TATGATATGA
1 TATGATATAA
*
7116412 TATGATATGA
1 TATGATATAA
7116422 TATGATATAA
1 TATGATATAA
* *
7116432 AATTATATAA
1 TATGATATAA
*
7116442 TATAATATA
1 TATGATATA
7116451 GAAGGGCTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (10 bp):
TATGATATAA
Found at i:7116580 original size:19 final size:19
Alignment explanation
Indices: 7116558--7116596 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7116548 TATATAATGT
7116558 ACTACTATTAT-TATATATA
1 ACTACTATTATATAT-TATA
*
7116577 ACTATTATTATATATTATA
1 ACTACTATTATATATTATA
7116596 A
1 A
7116597 TAAAAGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
ACTACTATTATATATTATA
Done.