Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 25 of 141
Found at i:7705727 original size:54 final size:54
Alignment explanation
Indices: 7705663--7705870 Score: 283
Period size: 54 Copynumber: 3.9 Consensus size: 54
7705653 TCAACCCATA
* * ** * * ** * *
7705663 AGGGTATTTCGGTCATTTTACTTTTCAACGGTATTTTGGTAATTTTATCCTTTG
1 AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCG
* *
7705717 AGGGTATTTC-GATAATTTTACCTTTCGAGGGTATTTCAATAATTTTACCCTTCG
1 AGGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCG
7705771 AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCG
1 AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCG
*
7705825 AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTTAGTAATTTT
1 AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTT
7705871 TCACCCCAAG
Statistics
Matches: 140, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
53 1 0.01
54 138 0.99
55 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCG
Found at i:7705777 original size:81 final size:81
Alignment explanation
Indices: 7705692--7705870 Score: 288
Period size: 81 Copynumber: 2.2 Consensus size: 81
7705682 ACTTTTCAAC
* * * *
7705692 GGTATTTTGGTAATTTTATCCTTTGAGGGTATTTC-GATAATTTTACCTTTCGAGGGTATTTCAA
1 GGTATTTTAGTAATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCAA
7705756 TAATTTTACCCTTCGAG
65 TAATTTTACCCTTCGAG
* *
7705773 GGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAGT
1 GGTATTTTAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAAT
7705838 AATTTTACCCTTCGAG
66 AATTTTACCCTTCGAG
7705854 GGTATTTTAGTAATTTT
1 GGTATTTTAGTAATTTT
7705871 TCACCCCAAG
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
81 89 0.99
82 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (81 bp):
GGTATTTTAGTAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAAT
AATTTTACCCTTCGAG
Found at i:7711473 original size:28 final size:28
Alignment explanation
Indices: 7711433--7711531 Score: 171
Period size: 28 Copynumber: 3.5 Consensus size: 28
7711423 GCAGTAACAG
*
7711433 TAGCCCAATACAGTAATAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
7711461 TAGCCCAATACAGTAACAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
7711489 TAGCCCAATACAGTAACAATGTGGGCCT
1 TAGCCCAATACAGTAACAATGTGGGCCT
* *
7711517 AAGCCCAATATAGTA
1 TAGCCCAATACAGTA
7711532 TCAGTACAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.22
Consensus pattern (28 bp):
TAGCCCAATACAGTAACAATGTGGGCCT
Found at i:7711970 original size:27 final size:27
Alignment explanation
Indices: 7711895--7711983 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
7711885 GGTGTATAAG
*
7711895 AGTCATTTTACCCTATAGGGGT-ATTT
1 AGTCATTTTACCCTATGGGGGTAATTT
*
7711921 CAGTCATTTTACCCTATGAGGGTAATTT
1 -AGTCATTTTACCCTATGGGGGTAATTT
* * *
7711949 GGTCATTTTACCCTGTGGGGGTAATTC
1 AGTCATTTTACCCTATGGGGGTAATTT
7711976 AGTCATTT
1 AGTCATTT
7711984 ATTAACCTCT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 50 0.93
28 4 0.07
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTAATTT
Found at i:7726426 original size:19 final size:18
Alignment explanation
Indices: 7726385--7726427 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
7726375 AATTGTTCAC
7726385 AATCTAAAGTTTACAAAT
1 AATCTAAAGTTTACAAAT
*
7726403 TATCTAAAGTTTTA-ACAAT
1 AATCTAAAG-TTTACA-AAT
7726422 AATCTA
1 AATCTA
7726428 GAATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (18 bp):
AATCTAAAGTTTACAAAT
Found at i:7735491 original size:27 final size:26
Alignment explanation
Indices: 7735457--7735509 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
7735447 CAATGGCATA
*
7735457 GAAATAATATAAC-CAAATAAATAAAC
1 GAAATAATA-AACACAAAAAAATAAAC
*
7735483 GAAACTAATAAACATAAAAAAATAAAC
1 GAAA-TAATAAACACAAAAAAATAAAC
7735510 AATGACAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.68, C:0.11, G:0.04, T:0.17
Consensus pattern (26 bp):
GAAATAATAAACACAAAAAAATAAAC
Found at i:7736006 original size:20 final size:21
Alignment explanation
Indices: 7735967--7736008 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7735957 AATATTCGTT
7735967 AAAAAGAATAAATATGTACATA
1 AAAAAGAATAAATA-GTACATA
*
7735989 AAAAATAATAAATA-TACATA
1 AAAAAGAATAAATAGTACATA
7736009 TATATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAAAGAATAAATAGTACATA
Found at i:7736032 original size:20 final size:20
Alignment explanation
Indices: 7736009--7736047 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7735999 AATATACATA
7736009 TATATATAAAAA-TAATTACG
1 TATATA-AAAAACTAATTACG
7736029 TATATAAAAAACTAATTAC
1 TATATAAAAAACTAATTAC
7736048 ATTATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
TATATAAAAAACTAATTACG
Found at i:7737841 original size:45 final size:45
Alignment explanation
Indices: 7737728--7737890 Score: 177
Period size: 45 Copynumber: 3.6 Consensus size: 45
7737718 CTATAATTCA
* * * * * * *
7737728 CTCCACTACAACTTTAGGGAGACAGGATTTG-TTTATTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTG
* * *
7737772 CCCCACTGCAATTTCAAGGG-GATAAGACTTGCTTTCTTGAGTTTG
1 CTCCACTGCAACTTC-AGGGAGATAAGACTTGCTTTCTTGAGTCTG
* *
7737817 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTG
* *
7737862 CTCCATTGCAACTTCAAGGAGATAAGACT
1 CTCCACTGCAACTTCAGGGAGATAAGACT
7737891 AGATGCGATC
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
44 23 0.23
45 76 0.77
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTG
Found at i:7738172 original size:100 final size:99
Alignment explanation
Indices: 7738031--7738216 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 99
7738021 CCATCTTCAG
* * *
7738031 TCTTTTAAATTGCAATGTTGGGAAACAGGATTCGCCGTCGTAGCTTCATTCCGTTCCACTACACT
1 TCTTTTAAATTGCAATGTTGGGAAACAAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACACC
**
7738096 GCCAGGGAAGTAAGATTCGCCGTTGCGACTTTAA
66 GCCAGGGAAACAAGATTCGCCGTTGCGACTTTAA
* * * *
7738130 TCTTTTTAATTGCAATGTTGGGGAAACAAGATTTGTCGTCGTAGCTTCAATCTGTTCCACTACAC
1 TCTTTTAAATTGCAATGTT-GGGAAACAAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACAC
7738195 CGCCAGGGAAACAAGATTCGCC
65 CGCCAGGGAAACAAGATTCGCC
7738217 ATTGTGGCTT
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
99 18 0.23
100 59 0.77
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (99 bp):
TCTTTTAAATTGCAATGTTGGGAAACAAGATTCGCCGTCGTAGCTTCAATCCGTTCCACTACACC
GCCAGGGAAACAAGATTCGCCGTTGCGACTTTAA
Found at i:7738427 original size:50 final size:49
Alignment explanation
Indices: 7738322--7738427 Score: 113
Period size: 50 Copynumber: 2.1 Consensus size: 49
7738312 CGCTAGGGAG
** * * *
7738322 ATAAGATTCGTCGTCGTGGCTTCAATCTGCTCCGCTACAATGCCAGGGA
1 ATAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCAAGGCA
** * *
7738371 AGTAAGATTCACCGTCGTGGCTTCAATCTTTTCCGTTGCAACGTCAAGGCA
1 A-TAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACG-CAAGGCA
7738422 ATAAGA
1 ATAAGA
7738428 CTAATGTCTT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
49 1 0.02
50 39 0.85
51 6 0.13
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (49 bp):
ATAAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCAAGGCA
Found at i:7748452 original size:21 final size:22
Alignment explanation
Indices: 7748412--7748453 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7748402 AATATTCGTT
*
7748412 AAAAAGAATAAATATGTACATGA
1 AAAAACAATAAATA-GTACATGA
7748435 AAAAACAATAAATA-TACAT
1 AAAAACAATAAATAGTACAT
7748454 ATATATGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
23 13 0.72
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (22 bp):
AAAAACAATAAATAGTACATGA
Found at i:7749118 original size:135 final size:139
Alignment explanation
Indices: 7748907--7749180 Score: 412
Period size: 136 Copynumber: 2.0 Consensus size: 139
7748897 CACTAGGCTA
* **
7748907 TTTAAGCCAAAAACTTTAAAAAAATTTAATTTTCTCATTGTTTTTAAAAAAAAAACAGAAATCCT
1 TTTAAGCCAAAAACATTAAAAAAAAATAATTTTCTCATTG-TTTT-AAAAAAAAACAGAAATCCT
* * *
7748972 TTTAAAAAAGGCTCTCCCCTCCC-AGTTCTCTGGCCAAGGTCAGGGAATCAGTCAGTCGTCAGCC
64 TTTAAAAAAGGCTCTCCCCTCCCTAGTTCTCCGACCAAGGTCAGGGAATCAGCCAGTCGTCAGCC
7749036 ACCGCGCCGGC
129 ACCGCGCCGGC
*
7749047 TTTAAGCCAAAAA-ATTAAAAAAAAATCATTTTCTCATTG-TTT-AAAAAAAACAGAAATCCTTT
1 TTTAAGCCAAAAACATTAAAAAAAAATAATTTTCTCATTGTTTTAAAAAAAAACAGAAATCCTTT
* *
7749109 TAAAAAAGGCTCTCCCCTCCCTAGTTCTCCGACCAAGGTTAGGGCATCAGCCAGTCGTCAGCCAC
66 TAAAAAAGGCTCTCCCCTCCCTAGTTCTCCGACCAAGGTCAGGGAATCAGCCAGTCGTCAGCCAC
*
7749174 TGCGCCG
131 CGCGCCG
7749181 ACTGCCGGTC
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
135 41 0.33
136 44 0.36
137 3 0.02
139 22 0.18
140 13 0.11
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (139 bp):
TTTAAGCCAAAAACATTAAAAAAAAATAATTTTCTCATTGTTTTAAAAAAAAACAGAAATCCTTT
TAAAAAAGGCTCTCCCCTCCCTAGTTCTCCGACCAAGGTCAGGGAATCAGCCAGTCGTCAGCCAC
CGCGCCGGC
Found at i:7757355 original size:7 final size:7
Alignment explanation
Indices: 7757345--7757403 Score: 77
Period size: 7 Copynumber: 8.4 Consensus size: 7
7757335 TGGGAGCTAG
*
7757345 GAGAGTT
1 GAGAGAT
7757352 GAGAGA-
1 GAGAGAT
7757358 GA-AGAT
1 GAGAGAT
7757364 GAGAGAT
1 GAGAGAT
7757371 GAGAGAT
1 GAGAGAT
7757378 GAGAGAT
1 GAGAGAT
7757385 GAGAAGGAT
1 GAG-A-GAT
7757394 GAGAGAT
1 GAGAGAT
7757401 GAG
1 GAG
7757404 GGTTGAGGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
5 3 0.06
6 4 0.09
7 32 0.68
8 2 0.04
9 6 0.13
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Found at i:7757410 original size:14 final size:14
Alignment explanation
Indices: 7757361--7757416 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
7757351 TGAGAGAGAA
*
7757361 GATGAGAGATGAGA
1 GATGAGAGATGAGG
7757375 GATGAGAGATGAGAAG
1 GATGAGAGATGAG--G
7757391 GATGAGAGATGAGG
1 GATGAGAGATGAGG
* *
7757405 GTTGAGGGATGA
1 GATGAGAGATGA
7757417 TATGAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 24 0.65
16 13 0.35
ACGTcount: A:0.38, C:0.00, G:0.46, T:0.16
Consensus pattern (14 bp):
GATGAGAGATGAGG
Found at i:7768140 original size:16 final size:17
Alignment explanation
Indices: 7768113--7768147 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7768103 AGAGAGTTGA
7768113 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
7768130 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
7768146 GA
1 GA
7768148 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:7776943 original size:17 final size:17
Alignment explanation
Indices: 7776923--7776958 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7776913 ATTTATTAAT
7776923 TTATTTTATTTA-AATTA
1 TTATTTT-TTTATAATTA
7776940 TTATTTTTTTATAATTA
1 TTATTTTTTTATAATTA
7776957 TT
1 TT
7776959 TTTGTATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTATTTTTTTATAATTA
Found at i:7778026 original size:26 final size:23
Alignment explanation
Indices: 7777973--7778031 Score: 55
Period size: 26 Copynumber: 2.4 Consensus size: 23
7777963 ATTATTATAT
* *
7777973 TATTAATAAATTTTTATTTTTAA
1 TATTAATAAATTTTAATTTTCAA
*
7777996 AATTAATACAATATTATAATTTTCAA
1 TATTAATA-AAT-TT-TAATTTTCAA
*
7778022 TATTATTAAA
1 TATTAATAAA
7778032 CATACATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
23 7 0.25
24 3 0.11
25 4 0.14
26 14 0.50
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTAATAAATTTTAATTTTCAA
Found at i:7781240 original size:51 final size:52
Alignment explanation
Indices: 7781163--7781350 Score: 190
Period size: 51 Copynumber: 3.7 Consensus size: 52
7781153 CTGTAAACAG
* *
7781163 GTGTGTAGGACTAAGTGCAGGCTACTACGTGTATC-GATA-GATAATGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGGAT-ATGGTCAC
* * * *
7781214 ATGTGTAGTACTATGTGCAGGCTACTATGTGTA-CTGG-TAGGCTTTGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GGATAGGATATGGTCAC
* * * * * *
7781265 GTGTGTAGTACTATGTGCAGGCTACTAAGTGAACCGGA-AAG-TTTGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGGATATGGTCAC
* *
7781315 GTGTGTAGTACTATGTGAAGGCAACTACGTGTATCG
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG
7781351 AATGATAATA
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
50 40 0.34
51 72 0.62
52 4 0.03
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (52 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGGATATGGTCAC
Found at i:7784516 original size:22 final size:22
Alignment explanation
Indices: 7784491--7784538 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7784481 TATTAGCTTA
7784491 ATTTTAAATCAAA-TTAG-TTTTT
1 ATTTT-AA-CAAATTTAGCTTTTT
*
7784513 ATTTTGACAAATTTAGCTTTTT
1 ATTTTAACAAATTTAGCTTTTT
7784535 ATTT
1 ATTT
7784539 ATAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 4 0.17
21 5 0.22
22 14 0.61
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (22 bp):
ATTTTAACAAATTTAGCTTTTT
Found at i:7789042 original size:14 final size:15
Alignment explanation
Indices: 7789025--7789061 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7789015 AAATGAAAAT
7789025 GAAAAAAGAGAG-AA
1 GAAAAAAGAGAGAAA
*
7789039 GAAAAAA-AGGGAAA
1 GAAAAAAGAGAGAAA
7789053 GAAAAAAGA
1 GAAAAAAGA
7789062 AAATGAGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 3 0.15
14 16 0.80
15 1 0.05
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
GAAAAAAGAGAGAAA
Found at i:7791260 original size:44 final size:44
Alignment explanation
Indices: 7791206--7792140 Score: 360
Period size: 44 Copynumber: 19.9 Consensus size: 44
7791196 AGTGTAAGGA
*
7791206 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGATATTACAGCGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * *
7791250 AGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* ** * *
7791294 AGCGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--G
* *
7791343 ATCGCATCAGATTGAAGCCAGAAATCTTATCCCCCTGAGATTACAGCGG
1 A--G---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * ** * *
7791392 AGTAGATTGAAGCTAGTAATCCAATCTCCCTGAGATTATAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* ** * * *
7791436 AGTAGATT-AAAATA-AATGATCTTATCTCTCT-AAAGTTACAGTAGAGTAG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--G
* * *
7791485 ATTGCATCAGATTGAAGCCAAAAATCTTATTTCCCTGAGATTACAGCGG
1 A--G---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * * *
7791534 AGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTATAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* ** * * *
7791578 AGCGGATT-AAAATA-AAGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--G
* *
7791627 ATCGCATTAGATTGAAGCCAGAAATCTTATCCCCCTGAGATTACAGCGG
1 A--GC---AGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * * * *
7791676 AGTAGATAGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
** * *
7791720 AGCAGATT-AAAATA-AATGATCTTATCTCTCT-AAAGTTACAGTAGACTAGATCG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AG-C--G---G
* *
7791773 CATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGG
1 -AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * *
7791818 AGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* ** * *
7791862 AGCGGATT-AAAATA-AAGGA-CTTATCTCTCTGA-AGTTACAGTAGATTAG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAG-CG----G
*
7791910 ATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGG
1 A--G---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * *
7791959 AGCAGATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* ** * *
7792003 AGCGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 AGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--G
*
7792052 ATCGCATCGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGAGG
1 A--GCA--GATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
* * * *
7792100 AGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTACAG
1 AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAG
7792141 TAGAGAGGAT
Statistics
Matches: 663, Mismatches: 132, Indels: 192
0.67 0.13 0.19
Matches are distributed among these distances:
42 7 0.01
43 45 0.07
44 372 0.56
45 1 0.00
46 3 0.00
47 18 0.03
48 5 0.01
49 16 0.02
50 7 0.01
51 17 0.03
53 30 0.05
54 110 0.17
55 24 0.04
56 8 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
AGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGG
Found at i:7791464 original size:142 final size:142
Alignment explanation
Indices: 7791208--7792202 Score: 1670
Period size: 142 Copynumber: 7.0 Consensus size: 142
7791198 TGTAAGGAAG
* *
7791208 CAGATTGAAGCTAGAAATCTTATCTCCCTGATATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
*
7791273 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
7791338 AGTAGATCGCAT
131 AGTAGATCGCAT
* * * *
7791350 CAGATTGAAGCCAGAAATCTTATCCCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCA
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* ** *
7791415 ATCTCCCTGAGATTATAGTGGAGTAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
*
7791480 AGTAGATTGCAT
131 AGTAGATCGCAT
* *
7791492 CAGATTGAAGCCAAAAATCTTATTTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
*
7791557 ATCTCCCTGAGATTATAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
7791622 AGTAGATCGCAT
131 AGTAGATCGCAT
* * * *
7791634 TAGATTGAAGCCAGAAATCTTATCCCCCTGAGATTACAGCGGAGTAGATAGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* *
7791699 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
*
7791764 ACTAGATCGCAT
131 AGTAGATCGCAT
*
7791776 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* *
7791841 ATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGA-CTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
*
7791905 ATTAGATCGCAT
131 AGTAGATCGCAT
*
7791917 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* *
7791982 ATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
7792047 AGTAGATCGCAT
131 AGTAGATCGCAT
* *
7792059 C-GATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGAGGAGCAGATTGAAGCCAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
* * *
7792123 ATTTCCCTGAGATTACAGTAGAGAGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
7792188 AGTAGATCGCAT
131 AGTAGATCGCAT
7792200 CAG
1 CAG
7792203 GTCTTATCTC
Statistics
Matches: 800, Mismatches: 51, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
141 272 0.34
142 528 0.66
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCT
ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAG
AGTAGATCGCAT
Found at i:7792139 original size:97 final size:97
Alignment explanation
Indices: 7791963--7792145 Score: 217
Period size: 97 Copynumber: 1.9 Consensus size: 97
7791953 CAGCGGAGCA
* * * * * * *
7791963 GATTGAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTAT
1 GATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAGAGGAGCAGATTAAAAGAAAGAATCCTAT
*
7792028 CTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 CTCCCTGAAGTTACAGTAGAGTAGATCGCATC
* * **
7792060 GATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGAGGAGCAGATT-GAAGCCAGTAATCCTA
1 GATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAGAGGAGCAGATTAAAAGAAAG-AATCCTA
*
7792124 TTTCCCTG-AGATTACAGTAGAG
65 TCTCCCTGAAG-TTACAGTAGAG
7792146 AGGATTAAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
96 6 0.08
97 65 0.92
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (97 bp):
GATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAGAGGAGCAGATTAAAAGAAAGAATCCTAT
CTCCCTGAAGTTACAGTAGAGTAGATCGCATC
Found at i:7792332 original size:50 final size:50
Alignment explanation
Indices: 7792278--7792952 Score: 324
Period size: 50 Copynumber: 13.5 Consensus size: 50
7792268 GTAGTGGAAC
*
7792278 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCGGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * * * * ** ** *
7792328 AGATTAAAGCTACAGCAGCAAATCTTACCTCCC-AAGCAGCGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGA-CATTGCAGTTAAAA
** * * **
7792378 AGATTAAAGCCACAACGTTGAATCTTGCCTCCATGACATTGTTGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * * * * * ** **
7792428 AGACTAAAGCCACAGCAGCAAATGTTACTTCCCTGGCAATGCAGTGGAGC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * *
7792478 AGATTAATGCCACGACGGTGTATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * * * * * * **
7792528 AGACTAAAACCACAGCGGTGAGTGTTACTTCCCTGGCGATAT--AGTGGAGCA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGAC-AT-TGCAGT-TAAAA
* ** *
7792579 A-ATTAAAGCCACAACGGTGAATCTTGCTT-CCTCGACATTATAGATAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCT-GACATTGCAGTTAAAA
* * * * * * ** *
7792628 AGATTAAAGCAACAACAGCGAATCTTACTCCCCAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGAC-ATTGCAGTTAAAA
* * ** * *
7792678 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCAAAATTACAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* * * * * * ** ** *
7792728 AGATTAAAGCTACAGCAGCAAATCTTACTTCCCTGGCGGTG-ACGTGGAAT
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCA-GTTAAAA
** * * *
7792778 AGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
** * * * * * ** *
7792828 ATTTTAAAGCTACAACAGCGAATCTTAC-TCCCAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGAC-ATTGCAGTTAAAA
* ** * *
7792877 ATATTAAAGCCACAATAGCGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
* *
7792927 AGATTAAAGCCACAATGGCGAGTCTT
1 AGATTAAAGCCACAACGGCGAATCTT
7792953 ACTTTCCAAA
Statistics
Matches: 433, Mismatches: 175, Indels: 34
0.67 0.27 0.05
Matches are distributed among these distances:
48 1 0.00
49 49 0.11
50 372 0.86
51 10 0.02
52 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCAGTTAAAA
Found at i:7792425 original size:100 final size:100
Alignment explanation
Indices: 7792270--7792936 Score: 721
Period size: 100 Copynumber: 6.7 Consensus size: 100
7792260 CAAGCGGTGT
* * *
7792270 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCTGACATTGCGGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* *
7792335 AGCTACAGCAGCAAATCTTACCTCCCAAGC-AGCGC
66 AGCTACAGCAGCAAATCTTACCTCCCAGGCGA-TGC
* * ** ** *
7792370 AGTGGAACAGATTAAAGCCACAACGTTGAATCTTGCCTCCATGACATTGTTGTTAAAAAGACTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * * * *
7792435 AGCCACAGCAGCAAATGTTACTTCCCTGGCAATGC
66 AGCTACAGCAGCAAATCTTACCTCCCAGGCGATGC
* * * * *
7792470 AGTGGAGCAGATTAATGCCACGACGGTGTATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * * ** * * * * **
7792535 AACCACAGCGGTGAGTGTTACTTCCCTGGCGATAT
66 AGCTACAGCAGCAAATCTTACCTCCCAGGCGATGC
* * * ** *
7792570 AGTGGAGCAAATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTATAGATAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * *
7792635 AGCAACAACAGCGAATCTTA-CTCCCCAGGCGATGC
66 AGCTACAGCAGCAAATCTTACCT-CCCAGGCGATGC
* * * *
7792670 AGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCAAAATTACAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * *
7792735 AGCTACAGCAGCAAATCTTACTTCCCTGGCGGTG-
66 AGCTACAGCAGCAAATCTTACCTCCCAGGCGATGC
* ** * **
7792769 ACGTGGAATAGATTAAAGCCACATTGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAATTTTA
1 A-GTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
* *
7792834 AAGCTACAACAGCGAATCTTA-CTCCCAGGCGATGC
65 AAGCTACAGCAGCAAATCTTACCTCCCAGGCGATGC
* ** * *
7792869 AGTGGAACATATTAAAGCCACAATAGCGAATCATGCTTCCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
7792934 AGC
66 AGC
7792937 CACAATGGCG
Statistics
Matches: 475, Mismatches: 87, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
99 70 0.15
100 403 0.85
101 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (100 bp):
AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
AGCTACAGCAGCAAATCTTACCTCCCAGGCGATGC
Found at i:7793215 original size:13 final size:13
Alignment explanation
Indices: 7793197--7793227 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7793187 ACCCACATAC
*
7793197 ATAAAATAATAAA
1 ATAAAATAAAAAA
7793210 ATAAAATAAAAAA
1 ATAAAATAAAAAA
7793223 ATAAA
1 ATAAA
7793228 TGTCCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (13 bp):
ATAAAATAAAAAA
Found at i:7794445 original size:22 final size:22
Alignment explanation
Indices: 7794420--7794467 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7794410 TATTAGCTTA
7794420 ATTTTAAATCAAA-TTAG-TTTTT
1 ATTTT-AA-CAAATTTAGCTTTTT
*
7794442 ATTTTGACAAATTTAGCTTTTT
1 ATTTTAACAAATTTAGCTTTTT
7794464 ATTT
1 ATTT
7794468 CTAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 4 0.17
21 5 0.22
22 14 0.61
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (22 bp):
ATTTTAACAAATTTAGCTTTTT
Found at i:7800925 original size:51 final size:50
Alignment explanation
Indices: 7800844--7801026 Score: 242
Period size: 51 Copynumber: 3.6 Consensus size: 50
7800834 ATAAACACGG
* * *
7800844 GTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGGTAATGGTCATAT
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-AGGT-TTGGTCATAT
* *
7800895 GTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGTCACAT
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGG-TTTGGTCATAT
* * * *
7800946 GTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAATGTTTGATCATGT
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGTTTGGTCATAT
*
7800996 GTGTAGTACTATGTGAAGGCTACTACGTGTA
1 GTGTAGTACTATGTGCAGGCTACTACGTGTA
7801027 TCGAATAAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
50 37 0.32
51 77 0.66
52 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGGTTTGGTCATAT
Found at i:7801026 original size:101 final size:102
Alignment explanation
Indices: 7800844--7801026 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 102
7800834 ATAAACACGG
* * *
7800844 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGGTAATGGTCATATGTGTAGTACTATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGAACCGATAGGTAATGATCATATGTGTAGTACTATGT
* *
7800909 GCAGGCTACTATGTGTACCGGAAGGCTTTGGTCACAT
66 GAAGGCTACTACGTGTACCGGAAGGCTTTGGTCACAT
* * * *
7800946 GTGTAGTACTATGTGCAGGCTACTACGTGAACCGGA-ATGT-TTGATCATGTGTGTAGTACTATG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGAACC-GATAGGTAATGATCATATGTGTAGTACTATG
7801009 TGAAGGCTACTACGTGTA
65 TGAAGGCTACTACGTGTA
7801027 TCGAATAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 36 0.51
102 33 0.46
103 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (102 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGAACCGATAGGTAATGATCATATGTGTAGTACTATGT
GAAGGCTACTACGTGTACCGGAAGGCTTTGGTCACAT
Found at i:7807758 original size:20 final size:20
Alignment explanation
Indices: 7807729--7807769 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7807719 AATTATTGAA
*
7807729 TGATTGCACTTA-GCTGCCCC
1 TGATTACACTTACG-TGCCCC
7807749 TGATTACACTTACGTGCCCC
1 TGATTACACTTACGTGCCCC
7807769 T
1 T
7807770 ATTTGTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (20 bp):
TGATTACACTTACGTGCCCC
Found at i:7807779 original size:20 final size:20
Alignment explanation
Indices: 7807756--7807859 Score: 63
Period size: 20 Copynumber: 5.2 Consensus size: 20
7807746 CCCTGATTAC
7807756 ACTTACGTGCCCCTATTTGT
1 ACTTACGTGCCCCTATTTGT
* * ** *
7807776 ACTT-TGATACCTTTGA-TTGC
1 ACTTACG-TGCCCCT-ATTTGT
* *
7807796 ACTTACGTGCCTCTGTTTGT
1 ACTTACGTGCCCCTATTTGT
* *
7807816 ACTT-CGATACCCCTGA-TTGC
1 ACTTACG-TGCCCCT-ATTTGT
7807836 ACTTACGTGCCCCTATTTGT
1 ACTTACGTGCCCCTATTTGT
7807856 ACTT
1 ACTT
7807860 CAGTACCCTT
Statistics
Matches: 60, Mismatches: 16, Indels: 16
0.65 0.17 0.17
Matches are distributed among these distances:
19 4 0.07
20 52 0.87
21 4 0.07
ACGTcount: A:0.16, C:0.28, G:0.15, T:0.40
Consensus pattern (20 bp):
ACTTACGTGCCCCTATTTGT
Found at i:7807804 original size:40 final size:40
Alignment explanation
Indices: 7807745--7807926 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
7807735 CACTTAGCTG
* *
7807745 CCCCTGATTACACTTACGTGCCCCTATTTGTACTTTGATA
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCGATA
** * *
7807785 CCTTTGATTGCACTTACGTGCCTCTGTTTGTACTTCGATA
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCGATA
7807825 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTC-AGTA
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCGA-TA
* * * * * *
7807865 CCCTTGATTGCACTTATGTGTCCTTGTTTGTACTTCGGTA
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCGATA
* *
7807905 ACCCTGATTGCACTTAGGTGCC
1 CCCCTGATTGCACTTACGTGCC
7807927 TGATAAAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 119 0.99
ACGTcount: A:0.16, C:0.28, G:0.17, T:0.38
Consensus pattern (40 bp):
CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCGATA
Found at i:7807878 original size:80 final size:80
Alignment explanation
Indices: 7807745--7807926 Score: 269
Period size: 80 Copynumber: 2.3 Consensus size: 80
7807735 CACTTAGCTG
* * *
7807745 CCCCTGATTACACTTACGTGCCCCTATTTGTACTTTGATACCTTTGATTGCACTTACGTG-CCTC
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTAGATACCCTTGATTGCACTTACGTGTCCT-
7807809 TGTTTGTACTTCGATA
65 TGTTTGTACTTCGATA
*
7807825 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTCAG-TACCCTTGATTGCACTTATGTGTCCT
1 CCCCTGATTGCACTTACGTGCCCCTATTTGTACTT-AGATACCCTTGATTGCACTTACGTGTCCT
*
7807889 TGTTTGTACTTCGGTA
65 TGTTTGTACTTCGATA
* *
7807905 ACCCTGATTGCACTTAGGTGCC
1 CCCCTGATTGCACTTACGTGCC
7807927 TGATAAAGGA
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
80 89 0.96
81 4 0.04
ACGTcount: A:0.16, C:0.28, G:0.17, T:0.38
Consensus pattern (80 bp):
CCCCTGATTGCACTTACGTGCCCCTATTTGTACTTAGATACCCTTGATTGCACTTACGTGTCCTT
GTTTGTACTTCGATA
Found at i:7809046 original size:40 final size:40
Alignment explanation
Indices: 7808961--7809105 Score: 107
Period size: 40 Copynumber: 3.6 Consensus size: 40
7808951 TGCATGTATC
* *
7808961 AGTGCCCCTGTTTGTACTTTGGTACCTCTGATTGCAATTA
1 AGTGCCCCTGTTTGTACTTCGGTACCTCTGATTACAATTA
* * * * *
7809001 CGTGCCCTTGTTTGTTCTTCGGTATCC-CTTATTACACTTA
1 AGTGCCCCTGTTTGTACTTCGGTA-CCTCTGATTACAATTA
* * * * * *
7809041 AGTGCCCCTATTCT-TACTTCGATACCCCTAATTGCACTTA
1 AGTGCCCCTGTT-TGTACTTCGGTACCTCTGATTACAATTA
* * *
7809081 CGTG-GCCTGTTTGTACTTCAGTACC
1 AGTGCCCCTGTTTGTACTTCGGTACC
7809106 CCTAAATGTA
Statistics
Matches: 82, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
38 1 0.01
39 17 0.21
40 61 0.74
41 3 0.04
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (40 bp):
AGTGCCCCTGTTTGTACTTCGGTACCTCTGATTACAATTA
Found at i:7809950 original size:20 final size:19
Alignment explanation
Indices: 7809925--7809979 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
7809915 ATGTTTATGT
*
7809925 TAAGTAAATGAAATGTAAAG
1 TAAGTAAATGGAATG-AAAG
7809945 TAAGTAAATGGAATAGAAAG
1 TAAGTAAATGGAAT-GAAAG
*
7809965 TAAGCAAATGGAATG
1 TAAGTAAATGGAATG
7809980 GTTTATGATC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.24, T:0.22
Consensus pattern (19 bp):
TAAGTAAATGGAATGAAAG
Found at i:7817828 original size:20 final size:20
Alignment explanation
Indices: 7817803--7817903 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
7817793 TTGCAATTAC
*
7817803 GTGCCCCTGTTTGTACTTTG
1 GTGCCCTTGTTTGTACTTTG
* *
7817823 GTGCCCTTGGTTGCACTTATG
1 GTGCCCTTGTTTGTACTT-TG
*
7817844 G-GCCCTTGTTTGTACTTTA
1 GTGCCCTTGTTTGTACTTTG
* * * ** **
7817863 GTACACTTGATTACACTTAC
1 GTGCCCTTGTTTGTACTTTG
*
7817883 GTTCCCTTGTTTGTACTTTG
1 GTGCCCTTGTTTGTACTTTG
7817903 G
1 G
7817904 CATCCCTAAT
Statistics
Matches: 59, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
19 2 0.03
20 54 0.92
21 3 0.05
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.44
Consensus pattern (20 bp):
GTGCCCTTGTTTGTACTTTG
Found at i:7817991 original size:20 final size:20
Alignment explanation
Indices: 7817907--7817998 Score: 64
Period size: 20 Copynumber: 4.6 Consensus size: 20
7817897 ACTTTGGCAT
* *
7817907 CCCTAATTGCACTTAC-GTGC
1 CCCTGATTGCACTT-CGGTAC
*
7817927 CCCT-ATTTGTACTTCGGTAC
1 CCCTGA-TTGCACTTCGGTAC
* * * *
7817947 CCCTGAATAG-ACATCTGTGC
1 CCCTG-ATTGCACTTCGGTAC
*
7817967 CCCTGTTTGCACTTCGGTAC
1 CCCTGATTGCACTTCGGTAC
7817987 CCCTGATTGCAC
1 CCCTGATTGCAC
7817999 ATTTGTGCTC
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
19 4 0.07
20 48 0.87
21 2 0.04
22 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (20 bp):
CCCTGATTGCACTTCGGTAC
Found at i:7818006 original size:40 final size:40
Alignment explanation
Indices: 7817711--7817998 Score: 242
Period size: 40 Copynumber: 7.2 Consensus size: 40
7817701 AATTTTTGAA
* *
7817711 TGATTGCACTTACGTG-CCCTAG-TTGTACTTTGGTACCCA
1 TGATTGCACTTACGTGCCCCT-GTTTGTACTTCGGTACCCC
* * * * *
7817750 TGATTACCCTTACGTGCCCCTGTTTATACTTCAGTACCTC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
7817790 TAATTGCAATTACGTGCCCCTGTTTGTACTTTGGTGCCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * ** * *
7817830 TGGTTGCACTTATGGGCCCTTGTTTGTACTTTAGTACACT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
7817870 TGATTACACTTACGTTCCCTTGTTTGTACTTTGGCATCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
7817910 TAATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
7817950 TGAATAG-ACAT-CTGTGCCCCTGTTTGCACTTCGGTACCCC
1 TG-ATTGCACTTAC-GTGCCCCTGTTTGTACTTCGGTACCCC
7817990 TGATTGCAC
1 TGATTGCAC
7817999 ATTTGTGCTC
Statistics
Matches: 194, Mismatches: 50, Indels: 9
0.77 0.20 0.04
Matches are distributed among these distances:
39 19 0.10
40 172 0.89
41 3 0.02
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.38
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:7818017 original size:40 final size:40
Alignment explanation
Indices: 7817923--7818030 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 40
7817913 TTGCACTTAC
*
7817923 GTGCCCCT-ATTTGTACTTCGGTACCCCTGAATAGACATCT
1 GTGCCCCTGA-TTGCACTTCGGTACCCCTGAATAGACATCT
* * *
7817963 GTGCCCCTGTTTGCACTTCGGTACCCCTG-ATTGCACATTT
1 GTGCCCCTGATTGCACTTCGGTACCCCTGAATAG-ACATCT
* * *
7818003 GTGCTCTTGATTGCACTT-GGTAACCCTG
1 GTGCCCCTGATTGCACTTCGGTACCCCTG
7818031 TTATGCATCT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
39 12 0.21
40 46 0.79
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (40 bp):
GTGCCCCTGATTGCACTTCGGTACCCCTGAATAGACATCT
Found at i:7822433 original size:22 final size:22
Alignment explanation
Indices: 7822407--7822449 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7822397 TGCATGTCCG
*
7822407 AACCTCTTCCATGCATTGTGAA
1 AACCTCATCCATGCATTGTGAA
* *
7822429 AACCTCATCTATGCGTTGTGA
1 AACCTCATCCATGCATTGTGA
7822450 GAACACTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (22 bp):
AACCTCATCCATGCATTGTGAA
Found at i:7827095 original size:15 final size:16
Alignment explanation
Indices: 7827065--7827098 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7827055 TTACACCTTG
7827065 TATAATTTGATTTTTT
1 TATAATTTGATTTTTT
*
7827081 TATAGTTTG-TTTTTT
1 TATAATTTGATTTTTT
7827096 TAT
1 TAT
7827099 GACTCTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (16 bp):
TATAATTTGATTTTTT
Found at i:7828835 original size:54 final size:54
Alignment explanation
Indices: 7828776--7828885 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
7828766 GATCGGCGTG
7828776 ACTTAAACTTAGGAATATAAGGGGGAAATGCAAAAGCTTAACCATTAGGATTCT
1 ACTTAAACTTAGGAATATAAGGGGGAAATGCAAAAGCTTAACCATTAGGATTCT
* *
7828830 ACTTAAACTTAGGAATATAAGGGGGAAATGCAAAGGCTTAACCATTAGGTTTCT
1 ACTTAAACTTAGGAATATAAGGGGGAAATGCAAAAGCTTAACCATTAGGATTCT
7828884 AC
1 AC
7828886 CCATACTTGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (54 bp):
ACTTAAACTTAGGAATATAAGGGGGAAATGCAAAAGCTTAACCATTAGGATTCT
Found at i:7831471 original size:20 final size:20
Alignment explanation
Indices: 7831446--7831501 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
7831436 AAGTTTATGA
*
7831446 TAAGTAAATGAAATGTG-AAG
1 TAAGTAAATGGAATG-GAAAG
7831466 TAAGTAAATGGAATGGAAAG
1 TAAGTAAATGGAATGGAAAG
*
7831486 TAAGCAAATGGAATGG
1 TAAGTAAATGGAATGG
7831502 TTCATGATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGGAATGGAAAG
Found at i:7834812 original size:30 final size:30
Alignment explanation
Indices: 7834776--7834834 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7834766 CCTGGGCATT
*
7834776 GCCACAC-AGGCTGGGCACA-AGCCCGTGTGA
1 GCCACACGA-GCTGGCCACACA-CCCGTGTGA
7834806 GCCACACGAGCTGGCCACACACCCGTGTG
1 GCCACACGAGCTGGCCACACACCCGTGTG
7834835 TCAGCCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.37, G:0.31, T:0.10
Consensus pattern (30 bp):
GCCACACGAGCTGGCCACACACCCGTGTGA
Found at i:7839516 original size:5 final size:5
Alignment explanation
Indices: 7839506--7839638 Score: 53
Period size: 5 Copynumber: 25.4 Consensus size: 5
7839496 AGTTCTCTAT
* *
7839506 TTTTA TTTTA TTTTA CTTTA TTTTA CTTTA --TTA TTCTTA TTCTTA TTTT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TT-TTA TTTTA
* * *
7839555 TTGTT- TGTTA TTTTATA TTTTA TATTTA TTCTTA TTATAA TTATTA GTTT-
1 TT-TTA TTTTA -TTT-TA TTTTA T-TTTA TT-TTA TT-TTA TT-TTA TTTTA
* *
7839605 CTTTA GTTTCT- TTCTTA GTTTA TTTTA TTTTA TT
1 TTTTA -TTT-TA TT-TTA TTTTA TTTTA TTTTA TT
7839639 ATTCTGCTTC
Statistics
Matches: 101, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
3 3 0.03
4 7 0.07
5 50 0.50
6 38 0.38
7 3 0.03
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.71
Consensus pattern (5 bp):
TTTTA
Found at i:7841187 original size:7 final size:7
Alignment explanation
Indices: 7841170--7841218 Score: 64
Period size: 8 Copynumber: 6.7 Consensus size: 7
7841160 ATTTATTTTC
7841170 TTTTTAA
1 TTTTTAA
7841177 -TTTTAA
1 TTTTTAA
7841183 TTTTTTAA
1 -TTTTTAA
7841191 TTTTTTAA
1 -TTTTTAA
7841199 TTTTTAA
1 TTTTTAA
7841206 TTTTTAAA
1 TTTTT-AA
7841214 TTTTT
1 TTTTT
7841219 TGTTGTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.15
7 12 0.31
8 21 0.54
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTAA
Found at i:7841190 original size:8 final size:8
Alignment explanation
Indices: 7841177--7841219 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
7841167 TTCTTTTTAA
7841177 TTTTAATT
1 TTTTAATT
7841185 TTTTAATT
1 TTTTAATT
7841193 TTTTAA-T
1 TTTTAATT
7841200 TTTTAATT
1 TTTTAATT
*
7841208 TTTAAATT
1 TTTTAATT
7841216 TTTT
1 TTTT
7841220 GTTGTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
7 7 0.22
8 25 0.78
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTAATT
Found at i:7841195 original size:15 final size:15
Alignment explanation
Indices: 7841170--7841219 Score: 68
Period size: 14 Copynumber: 3.3 Consensus size: 15
7841160 ATTTATTTTC
7841170 TTTTTAA-TTTTAAT
1 TTTTTAATTTTTAAT
7841184 TTTTTAATTTTTTAA-
1 TTTTTAA-TTTTTAAT
7841199 TTTTTAATTTTTAAAT
1 TTTTTAATTTTT-AAT
7841215 TTTTT
1 TTTTT
7841220 GTTGTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 12 0.38
15 9 0.28
16 11 0.34
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTAATTTTTAAT
Found at i:7842920 original size:26 final size:27
Alignment explanation
Indices: 7842891--7842944 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
7842881 CACAGTAAAA
* *
7842891 CTGCTAGTAATAGAAT-CGTAGCAAAG
1 CTGCCAGTAACAGAATACGTAGCAAAG
* *
7842917 CTGCCAGTAACAGTATACGTGGCAAAG
1 CTGCCAGTAACAGAATACGTAGCAAAG
7842944 C
1 C
7842945 CACCAGTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CTGCCAGTAACAGAATACGTAGCAAAG
Found at i:7843196 original size:27 final size:27
Alignment explanation
Indices: 7843140--7843441 Score: 324
Period size: 27 Copynumber: 11.2 Consensus size: 27
7843130 GGTATAAAAA
7843140 TCATTTTACCC-T-ATGGGGTATTTCGG
1 TCATTTTACCCTTCA-GGGGTATTTCGG
* * *
7843166 TCATTTTATCCTTCGGGGGTATTTCGA
1 TCATTTTACCCTTCAGGGGTATTTCGG
**
7843193 TCATTTTACCCTTCAGGGGTATTTCAA
1 TCATTTTACCCTTCAGGGGTATTTCGG
* * *
7843220 ACATTTTACCCTT-TGGAGATATTTCGG
1 TCATTTTACCCTTCAGG-GGTATTTCGG
* * *
7843247 TCATTTTACCATTAAGGGGTATTTTGG
1 TCATTTTACCCTTCAGGGGTATTTCGG
* *
7843274 TCATTTTACCCTTCAGGGTTATTTTGG
1 TCATTTTACCCTTCAGGGGTATTTCGG
* *
7843301 TCATTTTACCCTTTAGGGGTATTTTGG
1 TCATTTTACCCTTCAGGGGTATTTCGG
* * *
7843328 TTATTTTACCCTTTAGGGGTATTTCAG
1 TCATTTTACCCTTCAGGGGTATTTCGG
**
7843355 TCATTTTACCCTTCAAAGGTATTTCGG
1 TCATTTTACCCTTCAGGGGTATTTCGG
*
7843382 TCATTTTACCCTTCAAGGGTATTTCGG
1 TCATTTTACCCTTCAGGGGTATTTCGG
* * * *
7843409 TTATTTCACCCATC-GAGGGTATTTTGG
1 TCATTTTACCCTTCAG-GGGTATTTCGG
7843436 TCATTT
1 TCATTT
7843442 GCCCATACTC
Statistics
Matches: 235, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
26 12 0.05
27 221 0.94
28 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTTCAGGGGTATTTCGG
Found at i:7848126 original size:18 final size:18
Alignment explanation
Indices: 7848105--7848142 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7848095 GCTTGGAAAG
7848105 TGGTGGTGTTATTGATGT
1 TGGTGGTGTTATTGATGT
7848123 TGGTGGTGTTATTGATGT
1 TGGTGGTGTTATTGATGT
7848141 TG
1 TG
7848143 TTGCAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.39, T:0.50
Consensus pattern (18 bp):
TGGTGGTGTTATTGATGT
Found at i:7852525 original size:22 final size:22
Alignment explanation
Indices: 7852495--7852555 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
7852485 ATAGAACATG
7852495 TGCA-TGTGCGAACCTCTTCCA
1 TGCATTGTGCGAACCTCTTCCA
* * *
7852516 TGCATTGTGCAAACCTCATCTA
1 TGCATTGTGCGAACCTCTTCCA
* *
7852538 TGCGTTGTGTGAA-CTCTT
1 TGCATTGTGCGAACCTCTT
7852556 AGCATGAACC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (22 bp):
TGCATTGTGCGAACCTCTTCCA
Found at i:7859467 original size:17 final size:16
Alignment explanation
Indices: 7859445--7859491 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
7859435 AATTCTAACA
7859445 ATTAATATTTTTAAAT
1 ATTAATATTTTTAAAT
*
7859461 CATTAATTAATTTT-AAT
1 -ATTAA-TATTTTTAAAT
7859478 ATTAA-ATTTTTAAA
1 ATTAATATTTTTAAA
7859492 AAAATATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.19
15 2 0.08
16 5 0.19
17 8 0.31
18 6 0.23
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTAATATTTTTAAAT
Found at i:7869724 original size:40 final size:39
Alignment explanation
Indices: 7869626--7869888 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
7869616 TCCTCGTTCA
* * * *
7869626 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
7869665 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
7869704 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
7869744 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
7869784 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
7869824 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
7869865 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
7869889 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:7869848 original size:120 final size:119
Alignment explanation
Indices: 7869626--7869888 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
7869616 TCCTCGTTCA
* * *
7869626 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
7869691 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
7869744 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
7869809 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
7869865 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
7869889 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:7869897 original size:41 final size:41
Alignment explanation
Indices: 7869820--7869897 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
7869810 TTTGTATCTC
* * *
7869820 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
7869861 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
7869898 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:7877674 original size:40 final size:40
Alignment explanation
Indices: 7877574--7877838 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
7877564 GCTCCTCGTT
* * * *
7877574 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
7877614 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
7877653 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
7877693 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
7877733 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
7877773 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
7877814 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
7877839 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:7877798 original size:80 final size:80
Alignment explanation
Indices: 7877541--7877838 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
7877531 AAATCACGTA
* ** * * *
7877541 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
7877603 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
7877619 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
7877682 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
7877699 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
7877763 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
7877779 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
7877839 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:7877847 original size:41 final size:41
Alignment explanation
Indices: 7877770--7877847 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
7877760 TTTGTATCTC
* * *
7877770 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
7877811 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
7877848 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:7890080 original size:43 final size:40
Alignment explanation
Indices: 7890033--7890116 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 40
7890023 AGACTATGTT
* *
7890033 TAAGACCCTGTCTGGGATAGTGGCATCGATATATGATATCATG
1 TAAGACCATATCTGGGATA-TGGCATCG-TATATGATAT-ATG
* *
7890076 TAAGACCATATCTGGGATATGGCATTGTATGTGATATATG
1 TAAGACCATATCTGGGATATGGCATCGTATATGATATATG
7890116 T
1 T
7890117 GTTTCTGAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.11
41 9 0.24
42 7 0.19
43 17 0.46
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (40 bp):
TAAGACCATATCTGGGATATGGCATCGTATATGATATATG
Found at i:7896672 original size:4 final size:4
Alignment explanation
Indices: 7896663--7896741 Score: 158
Period size: 4 Copynumber: 19.8 Consensus size: 4
7896653 TAAGGGACGA
7896663 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7896711 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
7896742 ATGAATAAAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 75 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:7897420 original size:49 final size:49
Alignment explanation
Indices: 7897315--7897430 Score: 162
Period size: 50 Copynumber: 2.3 Consensus size: 49
7897305 ATTCGGGTTT
* * * **
7897315 CTAACACTAGTTTTAGACCAGGGTTGCTCAAATGAGCTAGTTCGATGTTG
1 CTAACACTAG-TTCAAACCAGGGTTGCTCAAATGAGCTAGTTCAATAATG
7897365 CTAACACTAGCTTCAAACCAGGGTTGCTCAAA-GAGCTAGTTCAATAATG
1 CTAACACTAG-TTCAAACCAGGGTTGCTCAAATGAGCTAGTTCAATAATG
7897414 CTAACACTAGTTCAAAC
1 CTAACACTAGTTCAAAC
7897431 ACCCTTTTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 7 0.12
49 24 0.40
50 29 0.48
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (49 bp):
CTAACACTAGTTCAAACCAGGGTTGCTCAAATGAGCTAGTTCAATAATG
Found at i:7898862 original size:27 final size:27
Alignment explanation
Indices: 7898831--7899008 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7898821 TAAATTGTAC
7898831 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7898858 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7898884 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7898912 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7898940 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7898967 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7898994 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7899009 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7898945 original size:82 final size:81
Alignment explanation
Indices: 7898832--7898987 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7898822 AAATTGTACA
* *
7898832 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7898896 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7898913 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7898978 TGCGAGTTGA
65 TGCGAATTGA
7898988 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7898999 original size:82 final size:81
Alignment explanation
Indices: 7898828--7899008 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7898818 GATTAAATTG
* *
7898828 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7898893 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7898909 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7898973 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7898991 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7899009 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7901358 original size:3 final size:3
Alignment explanation
Indices: 7901350--7901401 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
7901340 CTCCAGCCAA
7901350 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7901398 AAT A
1 AAT A
7901402 GCATATGTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7902431 original size:13 final size:13
Alignment explanation
Indices: 7902415--7902440 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7902405 TAAAACAAAA
7902415 ATTTTAAAAATAT
1 ATTTTAAAAATAT
7902428 ATTTTAAAAATAT
1 ATTTTAAAAATAT
7902441 TTTAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAAAAATAT
Found at i:7902442 original size:11 final size:11
Alignment explanation
Indices: 7902411--7902485 Score: 56
Period size: 11 Copynumber: 7.4 Consensus size: 11
7902401 AAATTAAAAC
*
7902411 AAAAAT-TTTA
1 AAAAATATTTT
7902421 AAAATATATTTT
1 AAAA-ATATTTT
7902433 AAAAATATTTT
1 AAAAATATTTT
7902444 --AAA-A--TT
1 AAAAATATTTT
*
7902450 AAAAA-AATTT
1 AAAAATATTTT
*
7902460 AAAAGTATTTT
1 AAAAATATTTT
*
7902471 TAAAATATTTT
1 AAAAATATTTT
7902482 AAAA
1 AAAA
7902486 TTAAAAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
6 2 0.04
8 5 0.10
9 3 0.06
10 10 0.19
11 25 0.48
12 7 0.13
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7902512 original size:30 final size:30
Alignment explanation
Indices: 7902472--7902545 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
7902462 AAGTATTTTT
7902472 AAAA-TATTTTAAAATT-AAAAAAATTAAAA
1 AAAAGTATTTTAAAATTAAAAAAAATT-AAA
7902501 AAAAGTATTTTAAAATTAAAAAAAATTAAA
1 AAAAGTATTTTAAAATTAAAAAAAATTAAA
7902531 AAAAGTATTTTAAAA
1 AAAAGTATTTTAAAA
7902546 GTATTTTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
29 4 0.09
30 30 0.70
31 9 0.21
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (30 bp):
AAAAGTATTTTAAAATTAAAAAAAATTAAA
Found at i:7902516 original size:40 final size:39
Alignment explanation
Indices: 7902418--7902572 Score: 172
Period size: 38 Copynumber: 4.2 Consensus size: 39
7902408 AACAAAAATT
*
7902418 TTAAAAATA-TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TTAAAAAAAGTATTTT-AAAATATTTTAAAATTAAAAAAA
*
7902457 TT--TAAAAGTATTTTTAAAATATTTTAAAATTAAAAAAA
1 TTAAAAAAAGTA-TTTTAAAATATTTTAAAATTAAAAAAA
7902495 TTAAAAAAAAGTATTTT-AAA-A--TT---A--AAAAAAA
1 TT-AAAAAAAGTATTTTAAAATATTTTAAAATTAAAAAAA
7902526 TTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAA
1 TTAAAAAAAGTATTTTAAAA-TATTTTAAAATTAAAAAAA
7902566 TTAAAAA
1 TTAAAAA
7902573 TAAAAATATT
Statistics
Matches: 98, Mismatches: 3, Indels: 29
0.75 0.02 0.22
Matches are distributed among these distances:
30 14 0.14
31 12 0.12
33 2 0.02
35 2 0.02
36 2 0.02
37 3 0.03
38 29 0.30
39 9 0.09
40 18 0.18
41 7 0.07
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (39 bp):
TTAAAAAAAGTATTTTAAAATATTTTAAAATTAAAAAAA
Found at i:7902531 original size:9 final size:10
Alignment explanation
Indices: 7902482--7902534 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
7902472 AAAATATTTT
7902482 AAAATT-AAA
1 AAAATTAAAA
7902491 AAAATTAAAA
1 AAAATTAAAA
* ***
7902501 AAAAGTATTTT
1 AAAATTA-AAA
7902512 AAAATTAAAA
1 AAAATTAAAA
7902522 AAAATTAAAA
1 AAAATTAAAA
7902532 AAA
1 AAA
7902535 GTATTTTAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
9 6 0.18
10 22 0.65
11 6 0.18
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.25
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:7902533 original size:41 final size:39
Alignment explanation
Indices: 7902482--7902572 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 39
7902472 AAAATATTTT
* *
7902482 AAAATT-AAAAAA-ATTAAAAAAAAGTATTTTAAAATTAAAA
1 AAAATTAAAAAAAGATT--AAAAAAGTATTTT-AAAATTAAA
**
7902522 AAAATTAAAAAAAGTATTTTAAAAGTATTTTAAAATTAAA
1 AAAATTAAAAAAAG-ATTAAAAAAGTATTTTAAAATTAAA
7902562 AAAATTAAAAA
1 AAAATTAAAAA
7902573 TAAAAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
40 24 0.55
41 17 0.39
43 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (39 bp):
AAAATTAAAAAAAGATTAAAAAAGTATTTTAAAATTAAA
Found at i:7902545 original size:11 final size:11
Alignment explanation
Indices: 7902531--7902556 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7902521 AAAAATTAAA
7902531 AAAAGTATTTT
1 AAAAGTATTTT
7902542 AAAAGTATTTT
1 AAAAGTATTTT
7902553 AAAA
1 AAAA
7902557 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:7906387 original size:23 final size:23
Alignment explanation
Indices: 7906343--7906387 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
7906333 TTAATTGATT
* * *
7906343 TATATTTATATTTAATTCAATTG
1 TATATTAATATTAAAATCAATTG
*
7906366 TATATTAATATTAAAATGAATT
1 TATATTAATATTAAAATCAATT
7906388 TATTAAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
TATATTAATATTAAAATCAATTG
Found at i:7909321 original size:6 final size:6
Alignment explanation
Indices: 7909310--7909348 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
7909300 AGGTTTCTAA
*
7909310 AAATGG AAATGG AAATGG AAATAG AAATGG AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
7909349 CTTACAATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.15
Consensus pattern (6 bp):
AAATGG
Found at i:7909546 original size:25 final size:25
Alignment explanation
Indices: 7909508--7909589 Score: 139
Period size: 25 Copynumber: 3.3 Consensus size: 25
7909498 TACTAGAAGC
*
7909508 AAAATTGTTA-AAATTTTACTGGGT
1 AAAATTGTCACAAATTTTACTGGGT
7909532 AAAATTGTCACAAATTTTACTGGGT
1 AAAATTGTCACAAATTTTACTGGGT
7909557 AAAATTGTCACAAATTTTACTAGGGT
1 AAAATTGTCACAAATTTTACT-GGGT
7909583 AAAATTG
1 AAAATTG
7909590 AGGTGAGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
24 9 0.16
25 35 0.64
26 11 0.20
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.37
Consensus pattern (25 bp):
AAAATTGTCACAAATTTTACTGGGT
Found at i:7915311 original size:50 final size:51
Alignment explanation
Indices: 7915226--7915337 Score: 122
Period size: 50 Copynumber: 2.2 Consensus size: 51
7915216 AGTCTAACCA
* * * *
7915226 AGAACACAC-CTTGGCACCGACTGCCTAGCCTGTAGGC-TAACATC-CCTCC
1 AGAA-ACACGCTTGGCACCAACTGCCAAGCCCGTAGGCTTAACATCGCCCCC
* *
7915275 AGAAACACGCTTGGGCACCAAGTGCCAAGCCCGTAGGCTTTACATCTGCCCCC
1 AGAAACACGCTT-GGCACCAACTGCCAAGCCCGTAGGCTTAACATC-GCCCCC
7915328 AGAAACACGC
1 AGAAACACGC
7915338 CAAAATCACT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
48 4 0.08
49 7 0.13
50 21 0.40
51 6 0.12
53 14 0.27
ACGTcount: A:0.27, C:0.37, G:0.21, T:0.16
Consensus pattern (51 bp):
AGAAACACGCTTGGCACCAACTGCCAAGCCCGTAGGCTTAACATCGCCCCC
Found at i:7917107 original size:45 final size:45
Alignment explanation
Indices: 7917044--7917136 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
7917034 CAAAAATTAA
*
7917044 AAAAATTGCATGTCTGTTTTAAATATTGAGTGGGAGAAGGTTCCT
1 AAAAATTGCATGTCTGTTTTAAATATTGAGTGGAAGAAGGTTCCT
7917089 AAAAATTGCATGTCTGTTTTAAATATTGAGTGGAAGAAGGTTCCT
1 AAAAATTGCATGTCTGTTTTAAATATTGAGTGGAAGAAGGTTCCT
7917134 AAA
1 AAA
7917137 CAAGACCTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (45 bp):
AAAAATTGCATGTCTGTTTTAAATATTGAGTGGAAGAAGGTTCCT
Found at i:7923059 original size:25 final size:25
Alignment explanation
Indices: 7922990--7923049 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
7922980 AATTTTCTCG
*
7922990 AAAA-TTTATCAGGGGTAAAATCATC
1 AAAATTTTATC-GAGGTAAAATCATC
* *
7923015 AAAATTTTATCGAGAGTAAATTCGTC
1 AAAATTTTATCGAG-GTAAAATCATC
7923041 AAAATTTTA
1 AAAATTTTA
7923050 CTGTGGTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 6 0.20
26 24 0.80
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (25 bp):
AAAATTTTATCGAGGTAAAATCATC
Found at i:7923061 original size:26 final size:26
Alignment explanation
Indices: 7922990--7923062 Score: 64
Period size: 26 Copynumber: 2.8 Consensus size: 26
7922980 AATTTTCTCG
*
7922990 AAAA-TTTATCAGGGGTAAAA-TCATC
1 AAAATTTTATC-GAGGTAAAATTCATC
*
7923015 AAAATTTTATCGAGAGT-AAATTCGTC
1 AAAATTTTATCGAG-GTAAAATTCATC
*
7923041 AAAATTTTA-CTGTGGTAAAATT
1 AAAATTTTATC-GAGGTAAAATT
7923063 GGGGTAAGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
25 12 0.30
26 28 0.70
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (26 bp):
AAAATTTTATCGAGGTAAAATTCATC
Found at i:7924787 original size:19 final size:19
Alignment explanation
Indices: 7924765--7924802 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7924755 TGGGAGAACG
7924765 GATTTATGC-AAAGAGATTA
1 GATTTAT-CTAAAGAGATTA
7924784 GATTTATCTAAAGAGATTA
1 GATTTATCTAAAGAGATTA
7924803 AGGATATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.34
Consensus pattern (19 bp):
GATTTATCTAAAGAGATTA
Found at i:7926377 original size:17 final size:16
Alignment explanation
Indices: 7926352--7926404 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
7926342 TGCTGTCCGC
7926352 CAGGAGATACTATCTGT
1 CAGG-GATACTATCTGT
* *
7926369 CAGGTGATACTATTTGC
1 CAGG-GATACTATCTGT
7926386 CAGGGAATACTATCTGT
1 CAGGG-ATACTATCTGT
7926403 CA
1 CA
7926405 TTGATGTATG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 1 0.03
17 29 0.97
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (16 bp):
CAGGGATACTATCTGT
Found at i:7934352 original size:13 final size:13
Alignment explanation
Indices: 7934334--7934359 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7934324 AAAATAAAAC
7934334 TAATAATAATAAT
1 TAATAATAATAAT
7934347 TAATAATAATAAT
1 TAATAATAATAAT
7934360 ATCAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAATAATAAT
Found at i:7937106 original size:44 final size:43
Alignment explanation
Indices: 7937008--7937116 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 43
7936998 GATCTGCTCT
* * * *
7937008 ACTGCAACTTCAGAGAGATAAGATCCATCATTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCCATAATTTAACCTGCCCC
* **
7937051 ACTGTAACTTCAGGGAGATAAGA-CTTGTAATTTCAACCTGCCCC
1 ACTGCAACTTCAGGGAGATAAGATC-CATAATTT-AACCTGCCCC
7937095 ACTGCAACTTCAGGGAGATAAG
1 ACTGCAACTTCAGGGAGATAAG
7937117 GTTTGATATG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 26 0.46
44 29 0.52
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ACTGCAACTTCAGGGAGATAAGATCCATAATTTAACCTGCCCC
Found at i:7953128 original size:16 final size:18
Alignment explanation
Indices: 7953100--7953134 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7953090 AATAAATATT
7953100 ATTAAATTAATTTT-TCA
1 ATTAAATTAATTTTCTCA
7953117 ATTAAA-TAATTTTCTCA
1 ATTAAATTAATTTTCTCA
7953134 A
1 A
7953135 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAAATTAATTTTCTCA
Found at i:7956640 original size:18 final size:17
Alignment explanation
Indices: 7956598--7956641 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7956588 TTATTTTAAG
7956598 TAAAAATATATATAAAA
1 TAAAAATATATATAAAA
* *
7956615 AAAGAAATATATATGCAAA
1 TAA-AAATATATAT-AAAA
7956634 TAAAAATA
1 TAAAAATA
7956642 AAAGAACGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 2 0.09
18 15 0.68
19 5 0.23
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (17 bp):
TAAAAATATATATAAAA
Found at i:7957750 original size:50 final size:50
Alignment explanation
Indices: 7957696--7957969 Score: 163
Period size: 50 Copynumber: 5.5 Consensus size: 50
7957686 ATTGCAATGT
* * *
7957696 TAGGGAAACAAGATTCGCCGTCGTGGCTTCAATCTGTTCTACTACACCGC
1 TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
* * * * * * * ** * ****
7957746 TAGGGAAGTAAGATTCGCCATTGCAACTTTAATCTTTTTAATTGA-AATAT
1 TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACT-ACACCGC
* **
7957796 TGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
1 TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
* * * * * ** * ** * * ** *
7957846 CAGAGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTAAATTGCAATGT
1 TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
* * *
7957896 TGGGGAAATGAGATTCGCCGTCGTAGCTTCAATCTGTCCCACTACACCGC
1 TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
* * *
7957946 TAGGGGAGTAAGATTCACCGTCGT
1 TAGGGAAATAAGATTCGCCGTCGT
7957970 GGTTTTAATT
Statistics
Matches: 148, Mismatches: 74, Indels: 4
0.65 0.33 0.02
Matches are distributed among these distances:
49 1 0.01
50 146 0.99
51 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (50 bp):
TAGGGAAATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGC
Found at i:7957810 original size:100 final size:100
Alignment explanation
Indices: 7957672--7957961 Score: 418
Period size: 100 Copynumber: 2.9 Consensus size: 100
7957662 GATTCGCCAT
* * * * *
7957672 CTTCAGTCTTTTAAATTGCAATGTTAGGGAAACAAGATTCGCCGTCGTGGCTTCAATCTGTTCTA
1 CTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
7957737 CTACACCGCTAGGGAAGTAAGATTCGCCATTGCAA
66 CTACACCGCTAGGGAAGTAAGATTCGCCATTGCAA
* * * *
7957772 CTTTAATCTTTTTAATTGAAATATTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
* * ** **
7957837 CTACACCGCCAGAGAAGTAAGATTCGCTGTTGCGG
66 CTACACCGCTAGGGAAGTAAGATTCGCCATTGCAA
* *
7957872 CTTCAATCTTTTAAATTGCAATGTTGGGGAAATGAGATTCGCCGTCGTAGCTTCAATCTGTCCCA
1 CTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
*
7957937 CTACACCGCTAGGGGAGTAAGATTC
66 CTACACCGCTAGGGAAGTAAGATTC
7957962 ACCGTCGTGG
Statistics
Matches: 166, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 166 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (100 bp):
CTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCTAGGGAAGTAAGATTCGCCATTGCAA
Found at i:7958151 original size:88 final size:88
Alignment explanation
Indices: 7958057--7958673 Score: 661
Period size: 88 Copynumber: 7.0 Consensus size: 88
7958047 ATCTGTAATC
* * * ** * * **
7958057 TTTAACCTGCTTCACTGCCACCGTGGGAGGCAAGGCTAGTGTCTTCGATCTACTTCACTGTTAGT
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
* *
7958122 ACAGGAAGGCAAGATCTGCTATC
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * * * * * *
7958145 TTTAACCTACTCCGCTGCCACCAAGGGAGGCAAGGTTAGTGTCTTTGATCTACTCCGCTATTGCT
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
* **
7958210 -TAGGGAA-ATAAGATCTG-TAATT
66 GCA-GGAAGGCAAGATCTGCT-ATT
* * * ** * ** ** *
7958232 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAAAGTCTTCGATTTGCTTCGCTGTCGGT
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
* *
7958297 GCAAGAAGGCAAGATATGCTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * *
7958320 TTTAACTTGCTCTGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
*
7958385 GCAGGAAGGCAAAATCTGCTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * *
7958408 TTTAACCTGCTCCGCTGTAACCCAGAGAGGCAAGG-TTGATGTCTTCAATCTGCTTCGCTGTCGA
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAG-TGTCTTCGATCTGCTTCGCTGTCGG
7958472 T--AGGAAGGCAAGATCTGCTATT
65 TGCAGGAAGGCAAGATCTGCTATT
* *
7958494 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGC
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
* * *
7958559 GCAGGAAGACAAGATCTACTTTT
66 GCAGGAAGGCAAGATCTGCTATT
* *
7958582 TTTAACCTTCTCCGCTGCAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
* *
7958647 GCCGGAAGGCAAGATCTACTATT
66 GCAGGAAGGCAAGATCTGCTATT
7958670 TTTA
1 TTTA
7958674 CTGATCTGCT
Statistics
Matches: 438, Mismatches: 82, Indels: 18
0.81 0.15 0.03
Matches are distributed among these distances:
86 77 0.18
87 65 0.15
88 295 0.67
89 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (88 bp):
TTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT
GCAGGAAGGCAAGATCTGCTATT
Found at i:7958494 original size:174 final size:175
Alignment explanation
Indices: 7958083--7958673 Score: 625
Period size: 174 Copynumber: 3.4 Consensus size: 175
7958073 GCCACCGTGG
* * ** *
7958083 GAGGCAAGGCTAGTGTCTTCGATCTACTTCACTGTTAGTACAGGAAGGCAAGATCTGCTATCTTT
1 GAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT-CAGGAAGGCAAGATCTGCTATTTTT
* * * * * * * * * * * **
7958148 AACCTACTCCGCTGCCACCAAGGGAGGCAAGGTTAGTGTCTTTGATCTACTCCGCTAT-TGCTTA
65 AACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGCGCA
* * * * * * ** * *
7958212 GGGAA-ATAAGATCT-GTAATTTTCAACCTACTCCACTGCTGCTCAGG
130 -GGAAGACAAAATCTACT-ATTTTTAACCTGCTCCGCTGCAACCCAGA
** ** * * *
7958258 GAGATAAGGCTAAAGTCTTCGATTTGCTTCGCTGTCGGTGCAAGAAGGCAAGATATGCTATTTTT
1 GAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT-CAGGAAGGCAAGATCTGCTATTTTT
* * *
7958323 AACTTGCTCTGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
65 AACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGCGCA
* * *
7958388 GGAAGGCAAAATCTGCTATTTTTAACCTGCTCCGCTGTAACCCAGA
130 GGAAGACAAAATCTACTATTTTTAACCTGCTCCGCTGCAACCCAGA
* * *
7958434 GAGGCAAGG-TTGATGTCTTCAATCTGCTTCGCTGTCGAT-AGGAAGGCAAGATCTGCTATTTTT
1 GAGGCAAGGCTAG-TGTCTTCGATCTGCTTCGCTGTCGGTCAGGAAGGCAAGATCTGCTATTTTT
*
7958497 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGCGCA
65 AACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGCGCA
* * * * *
7958562 GGAAGACAAGATCTACTTTTTTTAACCTTCTCCGCTGCAACCTAGG
130 GGAAGACAAAATCTACTATTTTTAACCTGCTCCGCTGCAACCCAGA
* *
7958608 GAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCCGGAAGGCAAGATCTACTATTTTT
1 GAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGT-CAGGAAGGCAAGATCTGCTATTTTT
7958673 A
65 A
7958674 CTGATCTGCT
Statistics
Matches: 341, Mismatches: 68, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
174 154 0.45
175 105 0.31
176 81 0.24
177 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (175 bp):
GAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTCAGGAAGGCAAGATCTGCTATTTTTA
ACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGCGCAG
GAAGACAAAATCTACTATTTTTAACCTGCTCCGCTGCAACCCAGA
Found at i:7958504 original size:43 final size:43
Alignment explanation
Indices: 7958369--7958510 Score: 110
Period size: 43 Copynumber: 3.3 Consensus size: 43
7958359 TGTCTTCGAT
* * *
7958369 CTGCTTCGCTGTCGGTGCAGGAAGGCAAAATCTGCTATTTTTAAC
1 CTGCTCCGCTGTCGAT--AGGAAGGCAAGATCTGCTATTTTTAAC
** * * * * * *
7958414 CTGCTCCGCTGTAAC-CCA-GAGAGGCAAGGT-TGATGTCTTCAAT
1 CTGCTCCGCTGT--CGATAGGA-AGGCAAGATCTGCTATTTTTAAC
*
7958457 CTGCTTCGCTGTCGATAGGAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTCCGCTGTCGATAGGAAGGCAAGATCTGCTATTTTTAAC
7958500 CTGCTCCGCTG
1 CTGCTCCGCTG
7958511 CAACCCAGGG
Statistics
Matches: 71, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.13
43 41 0.58
44 8 0.11
45 11 0.15
47 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (43 bp):
CTGCTCCGCTGTCGATAGGAAGGCAAGATCTGCTATTTTTAAC
Found at i:7958626 original size:262 final size:263
Alignment explanation
Indices: 7958081--7958673 Score: 710
Period size: 262 Copynumber: 2.3 Consensus size: 263
7958071 CTGCCACCGT
* * ** * *
7958081 GGGAGGCAAGGCTAGTGTCTTCGATCTACTTCACTGTTAGTACAGGAAGGCAAGATCTGCTATCT
1 GGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTT
* * ** * *
7958146 TTAACCTACTCCGCTGCCACCAAGGGAGGCAAGGTTAGTGTCTTTGATCTACTCCGCTATTGCTT
66 TTAACCTACTCCGCTGCAACCAAGAGAGGCAAGGTTAGTGTCTTCAATCTACTCCGCTATCGCAT
* ** * *
7958211 AGGGAAATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAAAGTCT
131 AGGGAAACAAGATCTGTAATTTTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTAAAGTCT
* * * * *
7958276 TCGATTTGCTTCGCTGTCGGTGCAAGAAGGCAAGATATGCTATTTTTAACTTGCTCTGCTACAAC
196 TCGATCTGCTTCGCTGTCGGCGCAAGAAGACAAGATATACTATTTTTAACTTGCTCCGCTACAAC
7958341 CCA
261 CCA
* *
7958344 GGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAAATCTGCTATTT
1 GGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTT
* * * * * *
7958409 TTAACCTGCTCCGCTGTAACCCAGAGAGGCAAGGTT-GATGTCTTCAATCTGCTTCGCTGTCG-A
66 TTAACCTACTCCGCTGCAACCAAGAGAGGCAAGGTTAG-TGTCTTCAATCTACTCCGCTATCGCA
* * * * * ***
7958472 TA-GGAAGGCAAGATCTGCT-ATTTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTG
130 TAGGGAA-ACAAGATCTG-TAATTTTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTAAAG
* * * *
7958535 TCTTCGATCTGCTTCGCTGTCGGCGCAGGAAGACAAGATCTACTTTTTTTAACCTT-CTCCGCTG
193 TCTTCGATCTGCTTCGCTGTCGGCGCAAGAAGACAAGATATACTATTTTTAA-CTTGCTCCGCTA
*
7958599 CAACCTA
257 CAACCCA
* *
7958606 GGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCCGGAAGGCAAGATCTACTATTT
1 GGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTT
7958671 TTA
66 TTA
7958674 CTGATCTGCT
Statistics
Matches: 279, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
261 4 0.01
262 165 0.59
263 110 0.39
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (263 bp):
GGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTT
TTAACCTACTCCGCTGCAACCAAGAGAGGCAAGGTTAGTGTCTTCAATCTACTCCGCTATCGCAT
AGGGAAACAAGATCTGTAATTTTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTAAAGTCT
TCGATCTGCTTCGCTGTCGGCGCAAGAAGACAAGATATACTATTTTTAACTTGCTCCGCTACAAC
CCA
Found at i:7963626 original size:114 final size:114
Alignment explanation
Indices: 7963188--7963617 Score: 617
Period size: 114 Copynumber: 3.8 Consensus size: 114
7963178 CTATTCGAGG
* * * *
7963188 CTTTAGCGGTGATTTTGTGGAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
1 CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
** * *
7963253 ATTTTGGGATTTAGTGGCATTTTCGGTGAAGCACCGCTAATGCTCAGGA
66 ATTCAGGGATTTAGCGGCATTTTCGGTGAAGCATCGCTAATGCTCAGGA
*
7963302 CTTTAGCGGCGTTTTTGATTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
1 CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
* *
7963367 ATTCAGGGATTTAGCGGCATTTTCGGTGAAGCGTCGCTAATGCTCAAGA
66 ATTCAGGGATTTAGCGGCATTTTCGGTGAAGCATCGCTAATGCTCAGGA
* *
7963416 CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGATGTCGTTTTCTGAGC
1 CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
* * ** * *
7963481 ATTCAGAGATTTAACGGTGTTTTTGGTGAAGCTTCGCTAATGCTCAGGA
66 ATTCAGGGATTTAGCGGCATTTTCGGTGAAGCATCGCTAATGCTCAGGA
** * * * *
7963530 CTTTAGCGGCGTTTTTGAGTAAATGCCGCAAAAAAACCTAAGCCTAACGATGCCGTTTTCTGAGC
1 CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
* *
7963595 ATTCGGGGATTTAGCGGCGTTTT
66 ATTCAGGGATTTAGCGGCATTTT
7963618 TTATGAAGCG
Statistics
Matches: 285, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
114 285 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (114 bp):
CTTTAGCGGCGTTTTTGAGTAAGCGCCGCAAAGAAACCGAAGCCCAACGACGCCGTTTTCTGAGC
ATTCAGGGATTTAGCGGCATTTTCGGTGAAGCATCGCTAATGCTCAGGA
Found at i:7963763 original size:8 final size:8
Alignment explanation
Indices: 7963749--7963799 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
7963739 TGGTTTTCTC
7963749 AAAACCCT
1 AAAACCCT
*
7963757 TAAACCCT
1 AAAACCCT
*
7963765 AAAACCAT
1 AAAACCCT
* *
7963773 -AATCCTT
1 AAAACCCT
7963780 AAAACCCT
1 AAAACCCT
*
7963788 AAACCCCT
1 AAAACCCT
7963796 AAAA
1 AAAA
7963800 ATTTTATGTG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
7 5 0.15
8 28 0.85
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (8 bp):
AAAACCCT
Found at i:7965239 original size:147 final size:146
Alignment explanation
Indices: 7965087--7965496 Score: 398
Period size: 147 Copynumber: 2.8 Consensus size: 146
7965077 AATGTAGTCA
* * * * **
7965087 TTTTGTCTATGGTATTAGTGGCGTTTTTCAGGAAACGCCACAAGCTTGAGTTAACTGTTGGGGAA
1 TTTTGTATAT-GTATTAGTGGCGTTTTTCAGAAAACGCCACAGGCTTGAGCTAACTGTTGATGAA
* * * *
7965152 ACGACTTCG-TTTGAACTTATATTTAGTGGCACTTTACTTAAAACGCCTCAAAATTGTTCTAACA
65 ACGACTACGTTTTG-ACTTATAGTTAGTGGCACTTTACTTAAAACGCCGCAAAAATGTTCTAACA
*
7965216 TTTATAGAAACGATGCCG
129 TTTATAGAAACGAGGCCG
* * * * * * ** *
7965234 TTTTGTAAATGTTATTCGTGGCAATTTTTC-GAAAATGCCACGGGTTTGAGGAAAGTGTTGATGA
1 TTTTGTATATG-TATTAGTGGC-GTTTTTCAGAAAACGCCACAGGCTTGAGCTAACTGTTGATGA
* * * ** *
7965298 AGCGACTGCGTTTTGATTTATAGTTAGTGGCACTTCGCTTAAAACGCCGCAAAAATGTTTTAACA
64 AACGACTACGTTTTGACTTATAGTTAGTGGCACTTTACTTAAAACGCCGCAAAAATGTTCTAACA
* * *
7965363 TTTATTGATACGAGGCTG
129 TTTATAGAAACGAGGCCG
* * * * **
7965381 CTTTGCTGTAT-TATTAGTGGCGTTTATTCA-AAAACGCCAGAGGCATGAGCTATTTGTTGATGA
1 TTTTG-TATATGTATTAGTGGCGTTT-TTCAGAAAACGCCACAGGCTTGAGCTAACTGTTGATGA
*
7965444 AACGACTACGTTTTGACTTATAGTTAGTGGCAC-TTATTTATAAACGCCGCAAA
64 AACGACTACGTTTTGACTTATAGTTAGTGGCACTTTACTTA-AAACGCCGCAAA
7965497 TGGTTAATTT
Statistics
Matches: 209, Mismatches: 47, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
145 7 0.03
146 79 0.38
147 110 0.53
148 13 0.06
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (146 bp):
TTTTGTATATGTATTAGTGGCGTTTTTCAGAAAACGCCACAGGCTTGAGCTAACTGTTGATGAAA
CGACTACGTTTTGACTTATAGTTAGTGGCACTTTACTTAAAACGCCGCAAAAATGTTCTAACATT
TATAGAAACGAGGCCG
Found at i:7967614 original size:13 final size:13
Alignment explanation
Indices: 7967598--7967762 Score: 145
Period size: 13 Copynumber: 12.5 Consensus size: 13
7967588 TTACTAAAAT
*
7967598 TTACTTTAATATA
1 TTACTTAAATATA
*
7967611 TTACTTGAATATA
1 TTACTTAAATATA
7967624 TTACTTAAATATA
1 TTACTTAAATATA
*
7967637 TTACTTAAATACA
1 TTACTTAAATATA
*
7967650 TTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
7967664 TTGGTTAAATTTA
1 TTACTTAAATATA
*
7967677 TTACTTAAATATG
1 TTACTTAAATATA
*
7967690 TTACTTAAATACA
1 TTACTTAAATATA
*
7967703 TTACTTACTAAAAT-
1 TTACTTA--AATATA
** *
7967717 TTGGTTAAATTTA
1 TTACTTAAATATA
*
7967730 TTACTTAAATATG
1 TTACTTAAATATA
*
7967743 TTACTTAAATACA
1 TTACTTAAATATA
7967756 TTACTTA
1 TTACTTA
7967763 CTAAAATTTA
Statistics
Matches: 119, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
12 6 0.05
13 97 0.82
14 10 0.08
15 6 0.05
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:7967679 original size:53 final size:53
Alignment explanation
Indices: 7967622--7967771 Score: 291
Period size: 53 Copynumber: 2.8 Consensus size: 53
7967612 TACTTGAATA
*
7967622 TATTACTTAAATATATTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
7967675 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
7967728 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
1 TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTT
7967772 AAGTATATAT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 96 1.00
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (53 bp):
TATTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTGGTTAAATT
Found at i:7967987 original size:16 final size:16
Alignment explanation
Indices: 7967966--7968015 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
7967956 CTTATATGTA
7967966 AACTTACATAATACAT
1 AACTTACATAATACAT
*
7967982 AACTTACAT-GT---T
1 AACTTACATAATACAT
7967994 AACTTACATAATACAT
1 AACTTACATAATACAT
7968010 AACTTA
1 AACTTA
7968016 TAAAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
15 1 0.04
16 16 0.57
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:7968155 original size:9 final size:9
Alignment explanation
Indices: 7968123--7968389 Score: 231
Period size: 9 Copynumber: 30.8 Consensus size: 9
7968113 ATAACATGAC
7968123 AACTTACAT
1 AACTTACAT
7968132 AA--TACAT
1 AACTTACAT
* *
7968139 AGCATACAT
1 AACTTACAT
7968148 AACTTACAT
1 AACTTACAT
7968157 AACTTACAT
1 AACTTACAT
*
7968166 AA--TACAA
1 AACTTACAT
7968173 AACTTACAT
1 AACTTACAT
*
7968182 AACTTAAAT
1 AACTTACAT
* *
7968191 ATCTTACAC
1 AACTTACAT
7968200 AACTTACAT
1 AACTTACAT
*
7968209 AACCTACAT
1 AACTTACAT
7968218 AA--TACATTT
1 AACTTACA--T
7968227 AACTTACAT
1 AACTTACAT
7968236 AACTTACAT
1 AACTTACAT
7968245 AACTTACAT
1 AACTTACAT
*
7968254 AATACATA-AT
1 -A-ACTTACAT
7968264 AACTTAC--
1 AACTTACAT
7968271 AACTTACAT
1 AACTTACAT
*
7968280 AACATACAT
1 AACTTACAT
* **
7968289 TACTTTGAT
1 AACTTACAT
7968298 AACTTACAT
1 AACTTACAT
7968307 AACTTACAT
1 AACTTACAT
*
7968316 AA--TACAC
1 AACTTACAT
7968323 AACTTACAT
1 AACTTACAT
* *
7968332 AGCTTACTT
1 AACTTACAT
7968341 AA--TACAT
1 AACTTACAT
7968348 AACTTACAT
1 AACTTACAT
7968357 AACTT--AT
1 AACTTACAT
*
7968364 ACACGTACAT
1 A-ACTTACAT
7968374 AACTTACAT
1 AACTTACAT
*
7968383 AATTTAC
1 AACTTAC
7968390 TTAATACATA
Statistics
Matches: 207, Mismatches: 31, Indels: 40
0.74 0.11 0.14
Matches are distributed among these distances:
7 38 0.18
8 7 0.03
9 148 0.71
10 6 0.03
11 8 0.04
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:7968161 original size:34 final size:34
Alignment explanation
Indices: 7968123--7968362 Score: 186
Period size: 34 Copynumber: 6.9 Consensus size: 34
7968113 ATAACATGAC
*
7968123 AACTTACATAATACATAGCATACATAACTTACAT
1 AACTTACATAATACATAACATACATAACTTACAT
* * *
7968157 AACTTACATAATACAAAACTTACATAACTTAAAT
1 AACTTACATAATACATAACATACATAACTTACAT
* * *
7968191 ATCTTACACAACTTACATAACCTACATAA--TACATTT
1 AACTTACATAA--TACATAACATACATAACTTACA--T
* *
7968227 AACTTACATAACTTACATAACTTACATAATACATA-AT
1 AACTTACATAA--TACATAACATACAT-A-ACTTACAT
* * **
7968264 AACTTACA-ACTTACATAACATACATTACTTTGAT
1 AACTTACATA-ATACATAACATACATAACTTACAT
*
7968298 AACTTACATAACTTACAT-A-ATACACAACTTACAT
1 AACTTACATAA--TACATAACATACATAACTTACAT
* * *
7968332 AGCTTACTTAATACATAACTTACATAACTTA
1 AACTTACATAATACATAACATACATAACTTA
7968363 TACACGTACA
Statistics
Matches: 165, Mismatches: 26, Indels: 30
0.75 0.12 0.14
Matches are distributed among these distances:
32 5 0.03
33 4 0.02
34 82 0.50
35 15 0.09
36 45 0.27
37 10 0.06
38 1 0.01
39 1 0.01
40 2 0.01
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (34 bp):
AACTTACATAATACATAACATACATAACTTACAT
Found at i:7968184 original size:79 final size:77
Alignment explanation
Indices: 7968093--7968246 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 77
7968083 GCTTATATAT
* *
7968093 AAACTTGCATAACTTACGTAATAACAT-GACAACTTACATAA-TACATAGCATACA-TAACTTAC
1 AAACTTACATAACTTA---AATAACATACACAACTTACATAACTACATA--ATACATTAACTTAC
7968155 ATAACTTACATAATACA
61 ATAACTTACATAATACA
* *
7968172 AAACTTACATAACTTAAATATCTTACACAACTTACATAACCTACATAATACATTTAACTTACATA
1 AAACTTACATAACTTAAATAACATACACAACTTACATAA-CTACATAATACA-TTAACTTACATA
7968237 ACTTACATAA
64 ACTTACATAA
7968247 CTTACATAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
76 6 0.09
77 18 0.27
79 42 0.64
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.30
Consensus pattern (77 bp):
AAACTTACATAACTTAAATAACATACACAACTTACATAACTACATAATACATTAACTTACATAAC
TTACATAATACA
Found at i:7968230 original size:27 final size:25
Alignment explanation
Indices: 7968094--7968317 Score: 150
Period size: 27 Copynumber: 8.4 Consensus size: 25
7968084 CTTATATATA
* *
7968094 AACTTGCATAACTTACGTAATAACAT
1 AACTTACATAACTTACATAAT-ACAT
7968120 GACAACTTACATAA--TACATAGCATACAT
1 ---AACTTACATAACTTACATA--ATACAT
*
7968148 AACTTACATAACTTACATAATACAA
1 AACTTACATAACTTACATAATACAT
* * *
7968173 AACTTACATAACTTAAATATCTTACAC
1 AACTTACATAACTTACATA--ATACAT
*
7968200 AACTTACATAACCTACATAATACATTT
1 AACTTACATAACTTACATAATACA--T
7968227 AACTTACATAACTTACATAACTTACAT
1 AACTTACATAACTTACATAA--TACAT
* *
7968254 AATACATA-ATAACTTACA-ACTTACAT
1 -A-ACTTACATAACTTACATA-ATACAT
* * **
7968280 AACATACATTACTTTGATAACTTACAT
1 AACTTACATAACTTACATAA--TACAT
7968307 AACTTACATAA
1 AACTTACATAA
7968318 TACACAACTT
Statistics
Matches: 159, Mismatches: 19, Indels: 36
0.74 0.09 0.17
Matches are distributed among these distances:
24 5 0.03
25 46 0.29
26 6 0.04
27 67 0.42
28 15 0.09
29 20 0.13
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAT
Found at i:7968281 original size:19 final size:19
Alignment explanation
Indices: 7968101--7968271 Score: 75
Period size: 18 Copynumber: 9.5 Consensus size: 19
7968091 ATAAACTTGC
* *
7968101 ATAACTTACGTAATAACATG
1 ATAACTTACATAAT-ACATA
*
7968121 ACAACTTACATAATAC---
1 ATAACTTACATAATACATA
* * *
7968137 ATAGCATACAT-A-ACTTA
1 ATAACTTACATAATACATA
7968154 CATAACTTACATAATAC--A
1 -ATAACTTACATAATACATA
*
7968172 A-AACTTACAT-A-ACTTAA
1 ATAACTTACATAATACAT-A
* * *
7968189 ATATCTTACA-CA-ACTTA
1 ATAACTTACATAATACATA
*
7968206 CATAACCTACATAATACAT-
1 -ATAACTTACATAATACATA
* *
7968225 TTAACTTACAT-A-ACTTA
1 ATAACTTACATAATACATA
7968242 CATAACTTACATAATACATA
1 -ATAACTTACATAATACATA
7968262 ATAACTTACA
1 ATAACTTACA
7968272 ACTTACATAA
Statistics
Matches: 116, Mismatches: 17, Indels: 37
0.68 0.10 0.22
Matches are distributed among these distances:
14 4 0.03
15 2 0.02
16 20 0.17
17 5 0.04
18 49 0.42
19 15 0.13
20 21 0.18
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.30
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:7968329 original size:25 final size:25
Alignment explanation
Indices: 7968123--7968400 Score: 199
Period size: 25 Copynumber: 10.7 Consensus size: 25
7968113 ATAACATGAC
* *
7968123 AACTTACATAATACATAGCATACAT
1 AACTTACATAATACATAACTTACAT
*
7968148 AACTTACATAACTTACATAA--TACAA
1 AACTTACATAA--TACATAACTTACAT
* * *
7968173 AACTTACATAACTTAAATATCTTACAC
1 AACTTACATAA--TACATAACTTACAT
7968200 AACTTACATAACCTACATAA--TACATTT
1 AACTTACATAA--TACATAACTTACA--T
7968227 AACTTACATAACTTACATAACTTACAT
1 AACTTACATAA--TACATAACTTACAT
*
7968254 AA--TACATAATAACTTACAACTTACAT
1 AACTTACATAAT-AC--ATAACTTACAT
* * **
7968280 AACATACATTACTTTGATAACTTACAT
1 AACTTACA-TA-ATACATAACTTACAT
*
7968307 AACTTACATAATACACAACTTACAT
1 AACTTACATAATACATAACTTACAT
* *
7968332 AGCTTACTTAATACATAACTTACAT
1 AACTTACATAATACATAACTTACAT
* * *
7968357 AACTTATACACGTACATAACTTACAT
1 AACTTACATA-ATACATAACTTACAT
* *
7968383 AATTTACTTAATACATAA
1 AACTTACATAATACATAA
7968401 ATATATATCA
Statistics
Matches: 204, Mismatches: 33, Indels: 32
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.00
24 2 0.01
25 90 0.44
26 34 0.17
27 66 0.32
28 4 0.02
29 6 0.03
30 1 0.00
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (25 bp):
AACTTACATAATACATAACTTACAT
Found at i:7968331 original size:71 final size:68
Alignment explanation
Indices: 7968198--7968385 Score: 181
Period size: 71 Copynumber: 2.7 Consensus size: 68
7968188 AATATCTTAC
* *
7968198 ACAACTTACATAACCTACATAATACATT-TAACTTACATAACTTACATAACTTACATAATACATA
1 ACAACTTACATAACATACAT--TAC-TTATAACTTACATAACTTACATAA--TACACAATACATA
7968262 -ATAACTT
61 GATAACTT
7968269 ACAACTTACATAACATACATTACTTTGATAACTTACATAACTTACATAATACACAACTTACATAG
1 ACAACTTACATAACATACATTAC-TT-ATAACTTACATAACTTACATAATACACAA--TACATAG
* *
7968334 CTTACTT
62 ATAACTT
* * *
7968341 --AA--TACATAACTTACATAACTTATACACGTACATAACTTACATAAT
1 ACAACTTACATAACATACATTACTTATA-ACTTACATAACTTACATAAT
7968386 TTACTTAATA
Statistics
Matches: 103, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
66 3 0.03
67 21 0.20
68 15 0.15
69 11 0.11
70 2 0.02
71 46 0.45
72 5 0.05
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (68 bp):
ACAACTTACATAACATACATTACTTATAACTTACATAACTTACATAATACACAATACATAGATAA
CTT
Found at i:7973918 original size:21 final size:21
Alignment explanation
Indices: 7973890--7973961 Score: 101
Period size: 21 Copynumber: 3.4 Consensus size: 21
7973880 CTACAACTTA
* *
7973890 AAGCAGAGG-TGGCAACGAGGG
1 AAGCAGAGGCT-GCAGCGAGAG
*
7973911 AAGTAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
7973932 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
7973953 AAGCAGAGG
1 AAGCAGAGG
7973962 TTCAAAATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 45 0.98
22 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.44, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:7974497 original size:42 final size:41
Alignment explanation
Indices: 7974439--7974627 Score: 207
Period size: 42 Copynumber: 4.5 Consensus size: 41
7974429 TTACCAAGCA
*
7974439 ATCTTTAGCGGCATTTTTCTTTAAGCGCCGCTAAAGAACATA
1 ATCTTTAGCGGCATTTTT-TTTAAGCGCCGCTAAAGAACATG
* *
7974481 ATCTTTAGCGGCATTTTTTTGAAAGCGCCGCTAAAGAATATG
1 ATCTTTAGCGGCATTTTTTT-TAAGCGCCGCTAAAGAACATG
** **
7974523 ATCTTTAGCGGTGTCTTTTTAGAAGCGCCGCTAAAGAACATG
1 ATCTTTAGCGGCAT-TTTTTTTAAGCGCCGCTAAAGAACATG
* * * * *
7974565 ATATTTAGCGGCGTCTTTTTTTTTAAGCGCTGCGAAAGATCATG
1 ATCTTTAGC-G-G-CATTTTTTTTAAGCGCCGCTAAAGAACATG
*
7974609 TTCTTTAGCGGCATTTTTT
1 ATCTTTAGCGGCATTTTTT
7974628 CTGTAAATGC
Statistics
Matches: 123, Mismatches: 19, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
41 9 0.07
42 76 0.62
43 7 0.06
44 30 0.24
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (41 bp):
ATCTTTAGCGGCATTTTTTTTAAGCGCCGCTAAAGAACATG
Found at i:7976476 original size:27 final size:26
Alignment explanation
Indices: 7976445--7976622 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
7976435 TAAATTGTAC
7976445 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
7976472 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
7976498 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
7976526 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
7976554 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
7976581 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
7976608 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7976623 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:7976561 original size:82 final size:81
Alignment explanation
Indices: 7976446--7976601 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7976436 AAATTGTACA
* *
7976446 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7976510 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
7976527 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7976592 TGCGAGTTGA
65 TGCGAATTGA
7976602 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7976613 original size:82 final size:81
Alignment explanation
Indices: 7976442--7976622 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
7976432 GATTAAATTG
* *
7976442 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7976507 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
7976523 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7976587 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7976605 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7976623 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7976633 original size:27 final size:27
Alignment explanation
Indices: 7976527--7976633 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
7976517 TGACCATGCG
* * * *
7976527 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
7976555 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
7976582 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
7976609 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
7976634 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:7979515 original size:140 final size:140
Alignment explanation
Indices: 7979358--7979794 Score: 874
Period size: 140 Copynumber: 3.1 Consensus size: 140
7979348 ATGTATTTAC
7979358 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
1 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
7979423 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
66 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
7979488 TAATTTCTAA
131 TAATTTCTAA
7979498 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
1 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
7979563 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
66 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
7979628 TAATTTCTAA
131 TAATTTCTAA
7979638 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
1 AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
7979703 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
66 AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
7979768 TAATTTCTAA
131 TAATTTCTAA
7979778 AAAATATGTATATATAT
1 AAAATATGTATATATAT
7979795 TATAAAAAAT
Statistics
Matches: 297, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
140 297 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (140 bp):
AAAATATGTATATATATAAGTACAATATATAAGTAAATTTGAAAATATGTGTATGCATATATTAA
AACACACATATAAGTATATATATAAAAAAAAAGAGAATTAAATATATAAAACAAAAAACTTATAA
TAATTTCTAA
Found at i:7982601 original size:27 final size:28
Alignment explanation
Indices: 7982541--7982594 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
7982531 AAAAATAATT
*
7982541 AAAATTAAATATGTTAATAATTTAAGTG
1 AAAATTAAATATGTTAATAATTAAAGTG
*
7982569 AAAATTAATTAT-TTAATAATTAAAGT
1 AAAATTAAATATGTTAATAATTAAAGT
7982595 ATGAATTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (28 bp):
AAAATTAAATATGTTAATAATTAAAGTG
Found at i:7984422 original size:27 final size:27
Alignment explanation
Indices: 7984391--7984568 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7984381 TAAATTGTAC
7984391 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
7984418 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7984444 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
7984472 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
7984500 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
7984527 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
7984554 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7984569 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:7984505 original size:82 final size:81
Alignment explanation
Indices: 7984392--7984547 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7984382 AAATTGTACA
* *
7984392 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
7984456 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
7984473 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
7984538 TGCGAGTTGA
65 TGCGAATTGA
7984548 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:7984559 original size:82 final size:81
Alignment explanation
Indices: 7984388--7984568 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
7984378 GATTAAATTG
* *
7984388 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
7984453 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
7984469 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
7984533 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
7984551 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
7984569 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:7994678 original size:3 final size:3
Alignment explanation
Indices: 7994670--7994843 Score: 348
Period size: 3 Copynumber: 58.0 Consensus size: 3
7994660 TATTGAACCA
7994670 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
7994718 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
7994766 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
7994814 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
7994844 CTTCGATGAT
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 171 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TAC
Found at i:7995233 original size:54 final size:54
Alignment explanation
Indices: 7995111--7995235 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 54
7995101 GACACATGAC
* *
7995111 CGTGTCCCAACTCGTGTCCTTGCCCATGTAACTCACTGACTTGAGACACACAGT
1 CGTGTCCCAACCCGTGTCCTTGCCCATGTAACTCACTGACTTAAGACACACAGT
* * ** * *
7995165 CGTGCCCCAGCCCGTGTCCTTGCCTGTGTAACTTACTGACTTAAGACA-AGC-GG
1 CGTGTCCCAACCCGTGTCCTTGCCCATGTAACTCACTGACTTAAGACACA-CAGT
7995218 CTGTGTCCCAACCCGTGT
1 C-GTGTCCCAACCCGTGT
7995236 AACTCATTGA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 3 0.05
54 56 0.95
ACGTcount: A:0.19, C:0.34, G:0.22, T:0.26
Consensus pattern (54 bp):
CGTGTCCCAACCCGTGTCCTTGCCCATGTAACTCACTGACTTAAGACACACAGT
Found at i:7999741 original size:18 final size:16
Alignment explanation
Indices: 7999718--7999751 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
7999708 ACATACATAT
7999718 ATATATATTAAATTAACA
1 ATATATA-TAAA-TAACA
7999736 ATATATATAAATAACA
1 ATATATATAAATAACA
7999752 TAAATCACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATATATAAATAACA
Done.