Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 26 of 141
Found at i:8004838 original size:10 final size:9
Alignment explanation
Indices: 8004818--8004871 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
8004808 ATATATTTGG
8004818 TTTTTATAA
1 TTTTTATAA
8004827 TTTTTATAAA
1 TTTTTAT-AA
*
8004837 TTTATATCAA
1 TTTTTAT-AA
* *
8004847 TCTTAATAA
1 TTTTTATAA
*
8004856 TTTTTATTA
1 TTTTTATAA
8004865 TTTTTAT
1 TTTTTAT
8004872 GAGAAAATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
9 22 0.61
10 14 0.39
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:8006972 original size:43 final size:43
Alignment explanation
Indices: 8006881--8006972 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
8006871 TGGTTTAGGA
* * * *
8006881 GTTTTAAGGTTAGGGTTTTGTTAAAATAATTTAGGTTTGTAAG
1 GTTTTAGGGTTAGAGTTTTGTTAAAATAATTTAGGGTTCTAAG
8006924 G-TTTAGGGTTTAGAGTTTTGTTAAAATAATTTAGGGTTCT-AG
1 GTTTTAGGG-TTAGAGTTTTGTTAAAATAATTTAGGGTTCTAAG
8006966 GTTTTAG
1 GTTTTAG
8006973 AAATTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 9 0.21
43 34 0.79
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (43 bp):
GTTTTAGGGTTAGAGTTTTGTTAAAATAATTTAGGGTTCTAAG
Found at i:8007368 original size:126 final size:126
Alignment explanation
Indices: 8007138--8007409 Score: 393
Period size: 126 Copynumber: 2.2 Consensus size: 126
8007128 TAAGGATATT
* * * ** *
8007138 TTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGATAATATGGTTCTGAACAAATAGTGTGAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAAATTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
* * *
8007203 ATGCTTCAAGCAGAATGCATTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGGCGCTC
66 ATGCTTCAAGCAGAATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTCGACGCTC
* * * *
8007264 TTTTTCTAAAGTAGTTCTTGAAAAAATAATTTTGAGAAGACAGTTCTGAGCAAATGGTGTCAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAAATTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
* *
8007329 ATGCTTCAAGCAGGATGCACTGTCAGCAAAATTGA-TGAAAAAAGCTCTCACGTCGACGCTC
66 ATGCTTCAAGCAGAATGCACTGTCAGCAAAATT-ACTGAAAAAAGCTCCCACGTCGACGCTC
8007390 TTTTTCTACAGTAGTTCTTG
1 TTTTTCTACAGTAGTTCTTG
8007410 TTTGGCCTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
126 128 0.99
127 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAAATTTGAGAAGACAGTTCTGAACAAATAGTGTCAAAA
ATGCTTCAAGCAGAATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTCGACGCTC
Found at i:8009166 original size:24 final size:23
Alignment explanation
Indices: 8009110--8009166 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
8009100 AAGAACTTCT
8009110 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAATA
8009133 ATTTACTATT-AAAATATTAAAAATA
1 ATTT--TATTAAAAATA-TAAAAATA
8009158 ACTTTTATT
1 A-TTTTATT
8009167 TTATTAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 10 0.33
25 13 0.43
26 3 0.10
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAATA
Found at i:8009567 original size:18 final size:18
Alignment explanation
Indices: 8009541--8009583 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8009531 GACTGAGAAA
* *
8009541 AGGAAACATATAAGCGTT
1 AGGATACATATAAGCGCT
*
8009559 AGGATACATATAAGGGCT
1 AGGATACATATAAGCGCT
8009577 AGGATAC
1 AGGATAC
8009584 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGCGCT
Found at i:8011349 original size:30 final size:30
Alignment explanation
Indices: 8011315--8011373 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8011305 TTAATTAAAG
*
8011315 AGAGCTTTGAGAAATTTAATGAGAAATTTA
1 AGAGCTTTGAGAAATTTAAGGAGAAATTTA
*
8011345 AGAGCTTTGAGAAATTTAGGGAGAAATTT
1 AGAGCTTTGAGAAATTTAAGGAGAAATTT
8011374 GAGAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (30 bp):
AGAGCTTTGAGAAATTTAAGGAGAAATTTA
Found at i:8012018 original size:105 final size:103
Alignment explanation
Indices: 8011815--8012192 Score: 413
Period size: 104 Copynumber: 3.6 Consensus size: 103
8011805 TAATTTTTTT
* *
8011815 TTGTATAAAGGGGGTGCCAACCATTGCCAAGCCACCCCAAATTTTTTTTTTACTTTTTTCGTATA
1 TTGTATAAAGGGGGTGCCGACCATTGCCAGGCCACCCCAAATTTTTTTTTTACTTTTTTCGTATA
8011880 CTGGTGCCGGCCATTGACAC-ACTAAAAGTAAAAAAAAAA
66 CTGGTGCC-GCCATTGACACAAC-AAAAGTAAAAAAAAAA
8011919 TTGGTATAAAGGGGGTGCCGACCATTGCCAGGCCA-CCCAAATTTTTTTTTTACTTTTTTCGTAT
1 TT-GTATAAAGGGGGTGCCGACCATTGCCAGGCCACCCCAAATTTTTTTTTTACTTTTTTCGTAT
8011983 ACTGGTGCCAGCCATTGACACAACAAAAGTAAAAAAAAATTA
65 ACTGGTGCC-GCCATTGACACAACAAAAGTAAAAAAAAA--A
* * * * *
8012025 TTGTACAAAGGGGGTGCCGGCTATTGCCAGGCCACCCAAAAAAATAATTTTTTTTAC-TTTTTCG
1 TTGTATAAAGGGGGTGCCGACCATTGCCAGGCCACCC---CAAAT-TTTTTTTTTACTTTTTTCG
* ** * * * * * **
8012089 TATTCTGGTGCCGATAATTGATAGACCAACACTTGAAAAAAAA
62 TATACTGGTGCCG-CCATTGACACAACAAAAGTAAAAAAAAAA
* * * *
8012132 TTCATATAAAGGGGGTGCCGACCATTGACAGGCCAGCACTCAAAATTTTTTTTT-CTTTTTT
1 TT-GTATAAAGGGGGTGCCGACCATTGCCAGGCCA-C-CCCAAATTTTTTTTTTACTTTTTT
8012193 TTCCAATTTT
Statistics
Matches: 233, Mismatches: 27, Indels: 26
0.81 0.09 0.09
Matches are distributed among these distances:
104 66 0.28
105 62 0.27
106 18 0.08
107 6 0.03
108 28 0.12
109 42 0.18
110 11 0.05
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (103 bp):
TTGTATAAAGGGGGTGCCGACCATTGCCAGGCCACCCCAAATTTTTTTTTTACTTTTTTCGTATA
CTGGTGCCGCCATTGACACAACAAAAGTAAAAAAAAAA
Found at i:8012128 original size:109 final size:104
Alignment explanation
Indices: 8011821--8012192 Score: 358
Period size: 105 Copynumber: 3.5 Consensus size: 104
8011811 TTTTTTGTAT
* * *
8011821 AAAGGGGGTGCCAACCATTGCCAAGCCACCCCAAATTTTTTTTTTACTTTTTTCGTATACTGGTG
1 AAAGGGGGTGCCGACCATTGCCAGGCCA-CCCAAATATTTTTTTTACTTTTTTCGTATACTGGTG
* * * ** *
8011886 CCGGCCATTGACAC-ACTAAAAGTAAAAAAAAAATTGGTAT
65 CCAGCAATTGACACAAC-AAAACTAAAAAAAAAATTCATAC
*
8011926 AAAGGGGGTGCCGACCATTGCCAGGCCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGGTGC
1 AAAGGGGGTGCCGACCATTGCCAGGCCACCCAAATATTTTTTTTACTTTTTTCGTATACTGGTGC
* * *
8011991 CAGCCATTGACACAACAAAAGTAAAAAAAAATTATT-GTAC
66 CAGCAATTGACACAACAAAACTAAAAAAAAA--ATTCATAC
* * *
8012031 AAAGGGGGTGCCGGCTATTGCCAGGCCACCCAAAAAAATAATTTTTTTTAC-TTTTTCGTATTCT
1 AAAGGGGGTGCCGACCATTGCCAGGCCACCC----AAAT-ATTTTTTTTACTTTTTTCGTATACT
* * * * * ** *
8012095 GGTGCC-GATAATTGATAGACCAACACTTGAAAAAAAATTCATAT
61 GGTGCCAG-CAATTGACACAACAAAACTAAAAAAAAAATTCATAC
* *
8012139 AAAGGGGGTGCCGACCATTGACAGGCCAGCACTCAAA-ATTTTTTTTTCTTTTTT
1 AAAGGGGGTGCCGACCATTGCCAGGCCA-C-C-CAAATATTTTTTTTACTTTTTT
8012193 TTCCAATTTT
Statistics
Matches: 230, Mismatches: 23, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
104 64 0.28
105 70 0.30
106 8 0.03
107 6 0.03
108 28 0.12
109 42 0.18
110 11 0.05
111 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (104 bp):
AAAGGGGGTGCCGACCATTGCCAGGCCACCCAAATATTTTTTTTACTTTTTTCGTATACTGGTGC
CAGCAATTGACACAACAAAACTAAAAAAAAAATTCATAC
Found at i:8012826 original size:26 final size:27
Alignment explanation
Indices: 8012776--8012828 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
8012766 TTTAAAATAC
* *
8012776 TTTAAAATATTTTTTTATTTTTTTATT
1 TTTAAAATATTTTTTTATGTGTTTATT
8012803 TTTAAAATATTTTTTT-TGTGTTTATT
1 TTTAAAATATTTTTTTATGTGTTTATT
8012829 AAAAACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TTTAAAATATTTTTTTATGTGTTTATT
Found at i:8020125 original size:31 final size:31
Alignment explanation
Indices: 8020084--8020149 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
8020074 CATATACACT
* *
8020084 TATATTCACCTATGTCGAATGCATACATATA
1 TATATCCACCTATGCCGAATGCATACATATA
8020115 TATATCCACCTATGCCGAATGCATACATATA
1 TATATCCACCTATGCCGAATGCATACATATA
8020146 TATA
1 TATA
8020150 AATATCTATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (31 bp):
TATATCCACCTATGCCGAATGCATACATATA
Found at i:8020418 original size:41 final size:41
Alignment explanation
Indices: 8020372--8020464 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
8020362 CTCTTGAGCT
* *
8020372 TGCTAGACTTATAGTC-CAA-AATGTGTCACCGGCATTAAGTC
1 TGCTAGACGTATAGTCTCAATAAT-T-TCACCGGCATTAAGCC
*
8020413 TGCTAGACGTATAGTCTGAATAATTTCACCGGCATTAAGCC
1 TGCTAGACGTATAGTCTCAATAATTTCACCGGCATTAAGCC
8020454 TGCTAGACGTA
1 TGCTAGACGTA
8020465 AAGTTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
41 41 0.87
42 3 0.06
43 3 0.06
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (41 bp):
TGCTAGACGTATAGTCTCAATAATTTCACCGGCATTAAGCC
Found at i:8020474 original size:41 final size:41
Alignment explanation
Indices: 8020397--8020474 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
8020387 CCAAAATGTG
* *
8020397 TCACCGGCATTAAGTCTGCTAGACGTATAGTCTGAATAATT
1 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATAATT
*
8020438 TCACCGGCATTAAGCCTGCTAGACGTAAAGTTTGAAT
1 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAT
8020475 TATGTCACTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATAATT
Found at i:8027618 original size:41 final size:41
Alignment explanation
Indices: 8027573--8027769 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
8027563 ACCGGCTCTT
*
8027573 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8027614 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8027655 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8027696 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8027737 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8027770 TAACGATAAA
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 139 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8036375 original size:13 final size:13
Alignment explanation
Indices: 8036357--8036381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8036347 CAATCAAATG
8036357 CACACAAAATAAA
1 CACACAAAATAAA
8036370 CACACAAAATAA
1 CACACAAAATAA
8036382 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:8039925 original size:39 final size:39
Alignment explanation
Indices: 8039882--8039958 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
8039872 ATCAATGGCT
*
8039882 ACAATTAAAAGCTATATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAACTATATACAATTAGAACTCTAAGATTAC
*
8039921 ACAATTAAAAACTGTATACAATTAGAACTCTAAGATTA
1 ACAATTAAAAACTATATACAATTAGAACTCTAAGATTA
8039959 TATAATCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.29
Consensus pattern (39 bp):
ACAATTAAAAACTATATACAATTAGAACTCTAAGATTAC
Found at i:8039960 original size:22 final size:22
Alignment explanation
Indices: 8039896--8039960 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
8039886 TTAAAAGCTA
8039896 TATACAATTAGAACTCTAAGAT
1 TATACAATTAGAACTCTAAGAT
* **
8039918 TACACAATTA-AAAACT--G--
1 TATACAATTAGAACTCTAAGAT
8039935 TATACAATTAGAACTCTAAGAT
1 TATACAATTAGAACTCTAAGAT
8039957 TATA
1 TATA
8039961 TAATCATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 9 0.28
18 4 0.12
19 1 0.03
20 1 0.03
21 4 0.12
22 13 0.41
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.31
Consensus pattern (22 bp):
TATACAATTAGAACTCTAAGAT
Found at i:8042044 original size:35 final size:35
Alignment explanation
Indices: 8041937--8042051 Score: 176
Period size: 35 Copynumber: 3.3 Consensus size: 35
8041927 TATTCTCTAT
** *
8041937 TTGGCGTACTTCGGTTGGATTAGCTTTTATGAGCA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
** *
8041972 TTACCGTGTTTCAGTTGGATTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
8042007 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
1 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
8042042 TTGGCGTGTT
1 TTGGCGTGTT
8042052 ATGATTGGAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 71 1.00
ACGTcount: A:0.16, C:0.15, G:0.29, T:0.41
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCA
Found at i:8045369 original size:36 final size:36
Alignment explanation
Indices: 8045292--8045369 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
8045282 AAATCAAACC
8045292 CAATAACAAACAAAGAACACAAAATCTTCAAAGAAG
1 CAATAACAAACAAAGAACACAAAATCTTCAAAGAAG
* * ** *
8045328 AAATAACAAACAATGAACTTAGAATCTTCACAA-AAG
1 CAATAACAAACAAAGAACACAAAATCTTCA-AAGAAG
8045364 CAATAA
1 CAATAA
8045370 AGAACTCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 33 0.94
37 2 0.06
ACGTcount: A:0.59, C:0.18, G:0.08, T:0.15
Consensus pattern (36 bp):
CAATAACAAACAAAGAACACAAAATCTTCAAAGAAG
Found at i:8047281 original size:17 final size:17
Alignment explanation
Indices: 8047245--8047282 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
8047235 TATAAAATAT
* *
8047245 TTTTATAATTTTATTTA
1 TTTTATAATTTTACTGA
8047262 TTTTATAATTTTACTGA
1 TTTTATAATTTTACTGA
8047279 TTTT
1 TTTT
8047283 TTAGATGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTATAATTTTACTGA
Found at i:8049005 original size:41 final size:41
Alignment explanation
Indices: 8048946--8049342 Score: 398
Period size: 41 Copynumber: 9.5 Consensus size: 41
8048936 GAATGTAAGG
* ** * * *
8048946 GGTTGCTAAGTGCAGATTCCCCAAATCATTGATCAAAAAGA
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
* *
8048987 GGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
* * ** * * *
8049028 GGTTTCTAAGTGCTTATTCCACAATATCCTTGATTGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTAT-AAAGT
* *
8049071 GGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
* * *
8049112 GGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTAT-AAAGT
* * *
8049155 GGTTGCTATGTGCTGATTCCCCGTCTCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
* * * *
8049196 GGTTGCTAAGTGTTGATTCCACCGTATCCTTGATTGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTAT-AAAGT
* *
8049239 GGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
* * ** * *
8049280 GGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATGAGGT
1 GGTTGCTAAGTGCTGATTCC-CC-GTAT-CATTGATTATAAAGT
8049324 GGTTGCTAAGTGCTGATTC
1 GGTTGCTAAGTGCTGATTC
8049343 TATCGTGTAA
Statistics
Matches: 291, Mismatches: 56, Indels: 15
0.80 0.15 0.04
Matches are distributed among these distances:
41 115 0.40
42 80 0.27
43 66 0.23
44 30 0.10
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGT
Found at i:8049083 original size:84 final size:84
Alignment explanation
Indices: 8048982--8049303 Score: 581
Period size: 84 Copynumber: 3.8 Consensus size: 84
8048972 CATTGATCAA
* * *
8048982 AAAGAGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTTCTAAGTGCTTATTC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
**
8049047 CACAATATCCTTGATTGTG
66 CACCGTATCCTTGATTGTG
8049066 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
8049131 CACCGTATCCTTGATTGTG
66 CACCGTATCCTTGATTGTG
* *
8049150 AAAGGGGTTGCTATGTGCTGATTCCCCGTCTCATTGATTATAAGGTGGTTGCTAAGTGTTGATTC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
8049215 CACCGTATCCTTGATTGTG
66 CACCGTATCCTTGATTGTG
8049234 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
8049299 CACCG
66 CACCG
8049304 GGATCCTTTG
Statistics
Matches: 229, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 229 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (84 bp):
AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTC
CACCGTATCCTTGATTGTG
Found at i:8054036 original size:2 final size:2
Alignment explanation
Indices: 8054029--8054058 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8054019 CCCAGTGTCT
8054029 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8054059 TTTAAATCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8054790 original size:5 final size:4
Alignment explanation
Indices: 8054740--8054818 Score: 61
Period size: 4 Copynumber: 19.0 Consensus size: 4
8054730 GCCCTGAGTT
* * *
8054740 TTTC TTTC TTTC TTTC TTTT TTTT TTTC TTTC TTTCC TTTC TGTTTC GTT-
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC --TTTC TTTC
* * *
8054790 TTGC TTTC TCTC TTTC TTTA TTTC ATTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC -TTTC
8054819 ATTTTATTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
3 1 0.02
4 47 0.78
5 8 0.13
6 4 0.07
ACGTcount: A:0.03, C:0.22, G:0.04, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:8055392 original size:26 final size:26
Alignment explanation
Indices: 8055346--8055398 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
8055336 AGCTATAAAT
8055346 ATTATTAAAATTTAATAAAAAATTAA
1 ATTATTAAAATTTAATAAAAAATTAA
*
8055372 ATTATTAAAAATTT-ATTAAAAATTAA
1 ATTATT-AAAATTTAATAAAAAATTAA
8055398 A
1 A
8055399 AAAAATATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
ATTATTAAAATTTAATAAAAAATTAA
Found at i:8055411 original size:18 final size:18
Alignment explanation
Indices: 8055388--8055430 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8055378 AAAAATTTAT
*
8055388 TAAAAATTAAAAAAAATA
1 TAAAAATCAAAAAAAATA
**
8055406 TAAAAATCGTAAAAAATA
1 TAAAAATCAAAAAAAATA
8055424 TAAAAAT
1 TAAAAAT
8055431 ATGTAGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
TAAAAATCAAAAAAAATA
Found at i:8055733 original size:38 final size:38
Alignment explanation
Indices: 8055662--8055734 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
8055652 GGGGTCGTTA
* **
8055662 ATTTTTTTATGATTTTATAAAATTTTATAATTTTTTTT
1 ATTTTTTTACGATTTTATAAAAAATTATAATTTTTTTT
*
8055700 ATTTTTTTACGATTTTCATAAAAAATTCT-ATTTTT
1 ATTTTTTTACGATTTT-ATAAAAAATTATAATTTTT
8055735 AATAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 21 0.70
39 9 0.30
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (38 bp):
ATTTTTTTACGATTTTATAAAAAATTATAATTTTTTTT
Found at i:8055758 original size:27 final size:27
Alignment explanation
Indices: 8055728--8055780 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8055718 TAAAAAATTC
8055728 TATTTTTAATAAATTTTAAATTTTTTA
1 TATTTTTAATAAATTTTAAATTTTTTA
** *
8055755 TATTTTTCTTAAATTTTAATTTTTTT
1 TATTTTTAATAAATTTTAAATTTTTT
8055781 TCTAAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (27 bp):
TATTTTTAATAAATTTTAAATTTTTTA
Found at i:8055766 original size:20 final size:19
Alignment explanation
Indices: 8055743--8055800 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
8055733 TTAATAAATT
8055743 TTAAATTTTTTATATTTTTC
1 TTAAATTTTTTAT-TTTTTC
8055763 TTAAATTTTAATT-TTTTTTC
1 TTAAATTTT--TTATTTTTTC
* *
8055783 TAAAATTTATTATTTTTT
1 TTAAATTTTTTATTTTTT
8055801 ATAATTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 22 0.67
21 1 0.03
22 2 0.06
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTAAATTTTTTATTTTTTC
Found at i:8055798 original size:18 final size:19
Alignment explanation
Indices: 8055751--8055799 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
8055741 TTTTAAATTT
*
8055751 TTTA-TATTTTTCTTAAAT
1 TTTATTATTTTTCTTAAAA
*
8055769 TTTAATTTTTTTTC-TAAAA
1 TTT-ATTATTTTTCTTAAAA
8055788 TTTATTATTTTT
1 TTTATTATTTTT
8055800 TATAATTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.42
19 8 0.31
20 7 0.27
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTATTTTTCTTAAAA
Found at i:8055952 original size:89 final size:86
Alignment explanation
Indices: 8055833--8056046 Score: 243
Period size: 89 Copynumber: 2.5 Consensus size: 86
8055823 ATAATAACAT
** * * *
8055833 GGGCTTAATTG-TTTTTTTGAAAAAACTTGAGTG-TTTTTTTGATGAATTCTGAGAGTTCAAGTA
1 GGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCTTTTTTT-ATGAATTCTAAAAGTTCAAGTA
8055896 CCCAATTAAGTGAAAAAAAAGTAA
65 CCCAATTAAGTGAAAAAAAA--AA
* * * *
8055920 GGGCTTAATTGCTTTTTTTTGAAGAAGTTTGAGGGCTTTTTTTATGCATTTTAAAAGTTCAAGTG
1 GGGCTTAATTGC-TTTTTTTGAAAAAGTTTGAGGGCTTTTTTTATGAATTCTAAAAGTTCAAGTA
** * *
8055985 TTCAATTGAGTGGAAAAAAAAA
65 CCCAATTAAGTGAAAAAAAAAA
* *
8056007 GAGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGATTTTT
1 GGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCTTTTT
8056047 ACTCCCTTTA
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
86 26 0.24
87 24 0.22
89 51 0.47
90 7 0.06
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (86 bp):
GGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCTTTTTTTATGAATTCTAAAAGTTCAAGTAC
CCAATTAAGTGAAAAAAAAAA
Found at i:8061011 original size:111 final size:111
Alignment explanation
Indices: 8060833--8061060 Score: 447
Period size: 111 Copynumber: 2.1 Consensus size: 111
8060823 TGGCTTTATC
8060833 ATGCTCCTCTCGCTTATGTTTGAGGGCATTTCTTGCTGTAATCGCGAGTTCCTCCTCAATTTCTT
1 ATGCTCCTCTCGCTTATGTTTGAGGGCATTTCTTGCTGTAATCGCGAGTTCCTCCTCAATTTCTT
8060898 CATGCTTTTGATCTTCATTTGAAGATAAACCAGCTACAGATGCCTT
66 CATGCTTTTGATCTTCATTTGAAGATAAACCAGCTACAGATGCCTT
*
8060944 ATGCTCCTCTCGCTTATGTTTGAGGGCATTTCTTGCTGTAATTGCGAGTTCCTCCTCAATTTCTT
1 ATGCTCCTCTCGCTTATGTTTGAGGGCATTTCTTGCTGTAATCGCGAGTTCCTCCTCAATTTCTT
8061009 CATGCTTTTGATCTTCATTTGAAGATAAACCAGCTACAGATGCCTT
66 CATGCTTTTGATCTTCATTTGAAGATAAACCAGCTACAGATGCCTT
8061055 ATGCTC
1 ATGCTC
8061061 TTCCTCCAGA
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 116 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (111 bp):
ATGCTCCTCTCGCTTATGTTTGAGGGCATTTCTTGCTGTAATCGCGAGTTCCTCCTCAATTTCTT
CATGCTTTTGATCTTCATTTGAAGATAAACCAGCTACAGATGCCTT
Found at i:8063550 original size:21 final size:22
Alignment explanation
Indices: 8063508--8063550 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
8063498 TAGTGCATTC
8063508 AATTTTGATTCATATTTACATAA
1 AATTTTGATT-ATATTTACATAA
*
8063531 AATTTTGATT-TATTTTCATA
1 AATTTTGATTATATTTACATA
8063551 TTGGATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
23 10 0.53
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
AATTTTGATTATATTTACATAA
Found at i:8065831 original size:56 final size:56
Alignment explanation
Indices: 8065716--8065844 Score: 145
Period size: 56 Copynumber: 2.3 Consensus size: 56
8065706 AATAAAATTA
* * *
8065716 TTAATATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATAAATAATTTAATAAAATTTTAAAATAATTATTATT-AATATAAT
* *
8065774 TTAATAAAA-AATATATAATTTAATAAAATTCTTAAAATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATAAATAATTTAATAAAATT-TTAAAATAATTATTATTAATAT-AAT
* *
8065830 TTACTAAAATCATAA
1 TTAATAAAATAATAA
8065845 TATATAATAG
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
55 4 0.07
56 29 0.48
57 21 0.35
58 6 0.10
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATAAATAATTTAATAAAATTTTAAAATAATTATTATTAATATAAT
Found at i:8072389 original size:19 final size:19
Alignment explanation
Indices: 8072365--8072418 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
8072355 AATCTTCAGG
8072365 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8072384 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8072403 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8072419 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8072394 original size:36 final size:34
Alignment explanation
Indices: 8072354--8072425 Score: 83
Period size: 38 Copynumber: 2.0 Consensus size: 34
8072344 TATGAAAACA
8072354 TAATCTTCAG-GGATATGCAATCTTAGATATGATATG
1 TAATCTT-AGAGGATATGCAATCTTAGA-A-GATATG
*
8072390 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTAG--AGGATATGCAATCTTAGAAGATATG
8072426 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 2 0.06
36 13 0.41
37 1 0.03
38 16 0.50
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (34 bp):
TAATCTTAGAGGATATGCAATCTTAGAAGATATG
Found at i:8072409 original size:38 final size:40
Alignment explanation
Indices: 8072365--8072441 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
8072355 AATCTTCAGG
8072365 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
8072403 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
8072442 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:8072880 original size:139 final size:139
Alignment explanation
Indices: 8072734--8073010 Score: 518
Period size: 139 Copynumber: 2.0 Consensus size: 139
8072724 GTAATTAAGT
*
8072734 TTTTTTTAATTTACTCTTTTATTTATTTTTATTTCAATTTGGTCTAATTTGAACGGCGTCGTTTA
1 TTTTTTTAATTTACCCTTTTATTTATTTTTATTTCAATTTGGTCTAATTTGAACGGCGTCGTTTA
8072799 GAGGAGAAGAGAAAATTGCCCTTCTAGCCCCTCTATGTAATTCGAGCGTTCAATTAAGTCCTCCA
66 GAGGAGAAGAGAAAATTGCCCTTCTAGCCCCTCTATGTAATTCGAGCGTTCAATTAAGTCCTCCA
*
8072864 GACTTTATA
131 AACTTTATA
8072873 TTTTTTTAATTTACCCTTTTATTTATTTTTATTTCAATTTGGTCTAATTTGAACGGCGTCGTTTA
1 TTTTTTTAATTTACCCTTTTATTTATTTTTATTTCAATTTGGTCTAATTTGAACGGCGTCGTTTA
* *
8072938 GAGGAGAAGAGAAAATTGCCCTTCTAGCCCCTCTATGTAATTCGAGCGTTCAATTAGGTCTTCCA
66 GAGGAGAAGAGAAAATTGCCCTTCTAGCCCCTCTATGTAATTCGAGCGTTCAATTAAGTCCTCCA
8073003 AACTTTAT
131 AACTTTAT
8073011 TTATTTGCGA
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 134 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (139 bp):
TTTTTTTAATTTACCCTTTTATTTATTTTTATTTCAATTTGGTCTAATTTGAACGGCGTCGTTTA
GAGGAGAAGAGAAAATTGCCCTTCTAGCCCCTCTATGTAATTCGAGCGTTCAATTAAGTCCTCCA
AACTTTATA
Found at i:8077239 original size:17 final size:19
Alignment explanation
Indices: 8077217--8077260 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8077207 TATGGAAACA
8077217 CAATCTT-CA-AGGATATG
1 CAATCTTACATAGGATATG
* *
8077234 CAATCTTAGATATGATATG
1 CAATCTTACATAGGATATG
8077253 CAATCTTA
1 CAATCTTA
8077261 GAAGATATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 1 0.04
19 15 0.65
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (19 bp):
CAATCTTACATAGGATATG
Found at i:8077288 original size:22 final size:22
Alignment explanation
Indices: 8077228--8077285 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
8077218 AATCTTCAAG
8077228 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
8077247 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
8077269 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
8077286 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:8080898 original size:218 final size:218
Alignment explanation
Indices: 8080510--8083582 Score: 3838
Period size: 218 Copynumber: 14.2 Consensus size: 218
8080500 TATTCTCAGT
* *
8080510 CTGCAACATCAGGGAAATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
*
8080575 TATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAAT
66 --T--G-----TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAAT
* * *
8080640 CCACTCCACTGCAAATTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAG
122 CTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAA
*
8080705 GGGGATAAGACTTGTTTTCTCAGTCTGCTCCG
187 GGGGATAAGACTTGCTTTCTCAGTCTGCTCCG
*
8080737 CTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * *
8080802 TGTTATTTGAATCCACTCCATTACAACTTTAGGGAGATAGGATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* ** * * *
8080867 TGCAAACTTAGGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTACTTCAAGGGGATAA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGGGATAA
8080931 GACTTGCTTTCTCAGTCTGCTCCG
195 GACTTGCTTTCTCAGTCTGCTCCG
* *
8080955 CTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
*
8081020 TATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* * *
8081085 TGCAAACTCATGGAGATAAGATTCACCATCTTCAGTCTGCCCCATTTCAACTTCAGGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
8081150 ACTTGCTTTCTCAGTCTGCTCCG
196 ACTTGCTTTCTCAGTCTGCTCCG
* * *
8081173 CTACAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGAGC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * * *
8081238 TGTTATTTGAATCAGCTTCATTGCAACTTTAGGGAGATGAGATTACTGGCTTTAATCTACCCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* *
8081303 TGCAAACTGAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACCTCAAGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
*
8081368 ACTTGCTTTCTTAGTCTGCTCCG
196 ACTTGCTTTCTCAGTCTGCTCCG
*
8081391 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * *
8081456 TGTTATTTGAATCCGCTCTATTGCAACTTCAAGGAGATGGGATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* ** * * ** *
8081521 TGCAAACTTAGGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTTGAAGGGGATAA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGGGATAA
*
8081585 GACTTGCTTTCTCAGTCTGTTCCG
195 GACTTGCTTTCTCAGTCTGCTCCG
* *
8081609 CTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* *
8081674 TATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTAATCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* ** ** * **
8081739 TACAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTGCTTCACTACTGCTT--AGGGAGATA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGG-GATA
*
8081801 AGA-TCTGC-TTCTTCGGTCTGCTCCG
194 AGACT-TGCTTTC-TCAGTCTGCTCCG
* * * *
8081826 CTGCAATCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * * * *
8081891 TGTTATTTGAATCCGCTCCACTACAACTTTAGGGAGATGGGATAACTAGATTAAATATACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* *
8081956 TGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCCACTTCAACTTCAAGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
* *
8082021 ACTTGCTTTCTTAGTCTTCTCCG
196 ACTTGCTTTCTCAGTCTGCTCCG
* ** * * * *
8082044 CTGCAACCTTAGGGATTTAAGACTTGATGCAATCTACTCTACTGCAACTTTAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * *
8082109 TGTTATTTGAATCCACTCCATTGCAACTTTAGGGAGATAGGATTACTGGCTTTAATCTAATCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
*
8082174 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
* *
8082239 ACTTGATTTCTCAGTCTGCTCCA
196 ACTTGCTTTCTCAGTCTGCTCCG
*
8082262 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* *
8082327 TATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* *** * * **
8082392 TGCAAACTTAGGGAGATAAGATTTGTCATCTTC-GATCTGCTCCACTACTGCTTCAAGGGGATAA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGGGATAA
8082456 GACTTGCTTTCTCAGTCTGCTCCG
195 GACTTGCTTTCTCAGTCTGCTCCG
8082480 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * *
8082545 TATCATTTGAATCTGCTCCACTG------C-----------A--AC-GGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* ** * * **
8082590 TGCAAACTCAGAGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTT--AGGGAGATA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGG-GATA
* *
8082652 AGATTTGC-TTCTTCGGTCTGCTCCG
194 AGACTTGCTTTC-TCAGTCTGCTCCG
* *
8082677 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTTCTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * * *
8082742 TCTTATTTGAATCCGCTCCGCTGCAACTTCAGGGAGATGAGATTACTGGATTTAATATACTCTAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
*
8082807 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTTAACTTCAAGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
*
8082872 ACTTGCTTTCTTAGTCTGCTCCG
196 ACTTGCTTTCTCAGTCTGCTCCG
* * * * * * **
8082895 CTGCAACCCCAAGAAGATAAGATCTGATGCGATCTACTATACTGCAACTTCAGAGAGAAAATATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * ** * * *
8082960 TGTCATCTGAATCTACTCCATTGTAACGTT-AGGGAGATGAGATTACTGGCTTTAATCTA-TCCT
66 TGTTATTTGAATCCGCTCCACTGCAAC-TTCAGGGAGATGGGATTACTGGCTTTAATCTACTCC-
* * *
8083023 ATTGCAAACTGAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATA
129 ACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATA
* * *
8083088 TA-ACTCGCTTTCTCAGTCTACTCTG
194 -AGACTTGCTTTCTCAGTCTGCTCCG
*
8083113 CTACAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* **
8083178 TATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGATATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
** * * * *
8083243 TGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTGCTCTACTACTACTT--AGGGAGATA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGG-GATA
* *
8083305 AGA-TCCGC-TTCTTCGGTCTGCTCCG
194 AGACT-TGCTTTC-TCAGTCTGCTCCG
* * * * *
8083330 CTGCAACCTTAGGGAGATAAAACCTAATGCGATCTTCTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
* * * * * * * * * * *
8083395 TGTTATTTCAATTCGCTCTACTACAACTTCAGGAAGATAGGATTATTAGCTTCAATCTGCTCCTC
66 TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* * * ** * * * **
8083460 TACAACCTCAGGGAGATAGGATTTTCCATCTTC-GATCTACTCCACTACTGCTT--AGGGAGATA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAAGGG-GATA
* * * **
8083522 AGATTTGCTATTTTTCGGTCTATTCCG
194 AGACTTGC--TTTCTCAGTCTGCTCCG
* * *
8083549 CTGTAACTTCAGGGAGATAAGACCTGATGTGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATC
8083583 AGCGATCTGT
Statistics
Matches: 2510, Mismatches: 284, Indels: 112
0.86 0.10 0.04
Matches are distributed among these distances:
196 7 0.00
197 105 0.04
198 68 0.03
199 2 0.00
201 1 0.00
203 1 0.00
212 1 0.00
214 1 0.00
216 18 0.01
217 432 0.17
218 1747 0.70
219 61 0.02
220 2 0.00
223 1 0.00
225 1 0.00
227 62 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (218 bp):
CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC
TGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
ACTTGCTTTCTCAGTCTGCTCCG
Found at i:8082569 original size:44 final size:44
Alignment explanation
Indices: 8082074--8082571 Score: 174
Period size: 44 Copynumber: 11.4 Consensus size: 44
8082064 GACTTGATGC
* * * * *
8082074 AATCTACTCTACTGCAACTTTAGAGAGATAAGATCTGTTATTTG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
** * * * *
8082118 AATCCACTCCATTGCAACTTTAGGGAGATAGGAT-TACTGGC-TTT-
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-T--CATTTG
** * * *
8082162 AATCTAATCCACTGCAAAC-TCAGGGAGATAAGAT-TCACCATCTTC
1 AATCTGCTCCACTGC-AACTTCAGAGAGATAAGATCT-ATCAT-TTG
* * * * * * *
8082207 AGTCTGCCCCACTTCAACTTCAGGGGGATAAGA-CT-TGATTTCTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCA-TT-TG
* * * * * **
8082251 AGTCTGCTCCACTGCAACCTCAGGGAGATAAGA-C-CTGATGCG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
* * * *
8082293 -ATCTACTCTACTGCAACTTCAGAGAGATATGATCTATTATTTG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
* * *
8082336 AATCCGCTCCACTGCAACTTCAGGGAGATGAGAT-TACTGGC-TTT-
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTA-T--CATTTG
* * * *
8082380 AATCTACTCCACTGCAAACTT-AGGGAGATAAGATTTGTCATCTTCG
1 AATCTGCTCCACTGC-AACTTCAGAGAGATAAGATCTATCAT-TT-G
* ** * * *
8082426 -ATCTGCTCCACTACTGCTTCA-AGGGGATAAGA-CT-TGCTTTCTC
1 AATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCTAT-CATT-TG
* * * * * * **
8082469 AGTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGCG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
* * *
8082511 -ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATCATTTG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
8082554 AATCTGCTCCACTGCAAC
1 AATCTGCTCCACTGCAAC
8082572 GGCTTTAATC
Statistics
Matches: 335, Mismatches: 84, Indels: 70
0.69 0.17 0.14
Matches are distributed among these distances:
41 51 0.15
42 4 0.01
43 19 0.06
44 200 0.60
45 61 0.18
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTATCATTTG
Found at i:8082691 original size:44 final size:45
Alignment explanation
Indices: 8082579--8082698 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 45
8082569 AACGGCTTTA
* *
8082579 ATCTACTCCACTGCAAACTCAGAGAGATAAGATTTGCCATCTTCG
1 ATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCG
* ** * *
8082624 ATCTGCTCCACTAC-TGCTTAGGGAGATAAGATTTG-CTTCTTCG
1 ATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCG
* * *
8082667 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA
1 ATCTGCTCCACTGCAAACTCAGGGAGATAAGA
8082699 CCTGATGCGA
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
43 18 0.30
44 31 0.51
45 12 0.20
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCG
Found at i:8083300 original size:44 final size:44
Alignment explanation
Indices: 8083247--8083529 Score: 138
Period size: 44 Copynumber: 6.5 Consensus size: 44
8083237 CTCCACTGCA
*
8083247 AACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC
1 AACTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC
* ** * * ** *
8083291 TACTTAGGGAGATAAGATCCG-CTTCTTCGGTCTGCTCCGCTGC
1 AACTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC
* * * * *
8083334 AACCTTAGGGAGATAA-A---ACC-TAATGCGATCTTCTCTACTGC
1 AA-CTTAGGGAGATAAGATTTGCCAT-CTTCGATCTGCTCTACTAC
* * ** *
8083375 AACTTCAGAGAGATAAGATCTGTTAT-TTCAAT-TCGCTCTACTAC
1 AACTT-AGGGAGATAAGATTTGCCATCTTCGATCT-GCTCTACTAC
* * * * *
8083419 AACTTCAGGAAGATAGGATTAT--TAGCTTCAATCTGCTCCT-CTAC
1 AACTT-AGGGAGATAAGATT-TGCCATCTTCGATCTGCT-CTACTAC
* * * * *
8083463 AACCTCAGGGAGATAGGATTTTCCATCTTCGATCTACTCCACTAC
1 AA-CTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC
**
8083508 TGCTTAGGGAGATAAGATTTGC
1 AACTTAGGGAGATAAGATTTGC
8083530 TATTTTTCGG
Statistics
Matches: 179, Mismatches: 42, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
40 4 0.02
41 25 0.14
42 1 0.01
43 23 0.13
44 104 0.58
45 21 0.12
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
AACTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC
Found at i:8116841 original size:25 final size:25
Alignment explanation
Indices: 8116813--8116871 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
8116803 TGATGATGGA
8116813 AAAAAGGAAAAGAAAAAGAA-AAGAG
1 AAAAAGGAAAA-AAAAAGAAGAAGAG
*
8116838 AAAAA-GAAAAAGAAAGAAGAAGAG
1 AAAAAGGAAAAAAAAAGAAGAAGAG
*
8116862 GAAAAGGAAA
1 AAAAAGGAAA
8116872 GGCCAAGGCG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 7 0.23
24 14 0.47
25 9 0.30
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (25 bp):
AAAAAGGAAAAAAAAAGAAGAAGAG
Found at i:8116857 original size:13 final size:12
Alignment explanation
Indices: 8116813--8116858 Score: 65
Period size: 13 Copynumber: 3.7 Consensus size: 12
8116803 TGATGATGGA
*
8116813 AAAAAGGAAAAG
1 AAAAAGAAAAAG
8116825 AAAAAGAAAAGAG
1 AAAAAGAAAA-AG
8116838 AAAAAGAAAAAG
1 AAAAAGAAAAAG
8116850 AAAGAAGAA
1 AAA-AAGAA
8116859 GAGGAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
12 14 0.45
13 17 0.55
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:8116858 original size:19 final size:20
Alignment explanation
Indices: 8116820--8116872 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
8116810 GGAAAAAAGG
8116820 AAAAGAAAAAGAAA-AGAGA
1 AAAAGAAAAAGAAAGAGAGA
8116839 AAAAGAAAAAGAAAGA-AGA
1 AAAAGAAAAAGAAAGAGAGA
* * *
8116858 AGAGGAAAAGGAAAG
1 AAAAGAAAAAGAAAG
8116873 GCCAAGGCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 29 0.97
20 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAAGAAAGAGAGA
Found at i:8116871 original size:6 final size:6
Alignment explanation
Indices: 8116813--8116858 Score: 65
Period size: 6 Copynumber: 7.3 Consensus size: 6
8116803 TGATGATGGA
*
8116813 AAAAAG GAAAAG AAAAAG AAAAGAG AAAAAG AAAAAG AAAGAAG AA
1 AAAAAG AAAAAG AAAAAG AAAA-AG AAAAAG AAAAAG AAA-AAG AA
8116859 GAGGAAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
6 25 0.69
7 11 0.31
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:8118288 original size:44 final size:44
Alignment explanation
Indices: 8118225--8118389 Score: 215
Period size: 44 Copynumber: 4.0 Consensus size: 44
8118215 CGATGACCCC
8118225 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTA
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTA
*
8118269 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGTTTGAAAATTGTA
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTA
* * *
8118313 AATCCTATCTCCTTGGTCAGTAGTGGAATA-G--G-----TG-A
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTA
*
8118348 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
8118390 GAATCTTACT
Statistics
Matches: 105, Mismatches: 7, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
34 26 0.25
35 3 0.03
36 2 0.02
37 1 0.01
41 1 0.01
42 2 0.02
44 70 0.67
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (44 bp):
AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTA
Found at i:8118356 original size:34 final size:34
Alignment explanation
Indices: 8118313--8118379 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
8118303 GAAAATTGTA
* *
8118313 AATCCTATCTCCTTGGTCAGTAGTGGAATAGGTG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTG
8118347 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGT
8118380 TGAAGATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (34 bp):
AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTG
Found at i:8118584 original size:34 final size:34
Alignment explanation
Indices: 8118541--8118607 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8118531 AGTGAAATAG
*
8118541 ATTGAAGCCAAAACGGCGAATCTTA-CTTCCCTGA
1 ATTGAAGCCAAAACGACGAATCTTATC-TCCCTGA
**
8118575 ATTGAAGCCACGACGACGAATCTTATCTCCCTG
1 ATTGAAGCCAAAACGACGAATCTTATCTCCCTG
8118608 GCGTTAAGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (34 bp):
ATTGAAGCCAAAACGACGAATCTTATCTCCCTGA
Found at i:8118715 original size:151 final size:151
Alignment explanation
Indices: 8118440--8118724 Score: 354
Period size: 151 Copynumber: 1.9 Consensus size: 151
8118430 CTGAGGGCAG
*
8118440 CGAATCTTATCTCCCTAGCATTAAGACTTGAAATAGCTGAAGCAGAGAGGATTAAAGCTGTGGGT
1 CGAATCTTATCTCCCTAGCATTAAGACTTGAAATAGCTGAAGCAGAGAGGATTAAAGCTGTGGGC
*** * * * *
8118505 AGTTAATCCTATCTCTTTGGCATTACAGTGAAATAGATTGAAGCCAAAACGGCGAATCTTACTTC
66 AACGAATCCTATCTCTTTGGCATTACAGTGAAACAGATTAAAGCCAAAACGACGAATCTTACTCC
8118570 CCTGAATTGAAGCCACGACGA
131 CCTGAATTGAAGCCACGACGA
* * * * * * ** * *
8118591 CGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGTTGAAGTGGAGCGGATTGAAGCTGTGGGC
1 CGAATCTTATCTCCCTAGCATTAAGACTTGAAATAGCTGAAGCAGAGAGGATTAAAGCTGTGGGC
* * ** * *
8118656 AACGAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAGCCGCAATGACGGATCTTACTCC
66 AACGAATCCTATCTCTTTGGCATTACAGTGAAACAGATTAAAGCCAAAACGACGAATCTTACTCC
8118721 CCTG
131 CCTG
8118725 GCGGTGTAGT
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
151 110 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (151 bp):
CGAATCTTATCTCCCTAGCATTAAGACTTGAAATAGCTGAAGCAGAGAGGATTAAAGCTGTGGGC
AACGAATCCTATCTCTTTGGCATTACAGTGAAACAGATTAAAGCCAAAACGACGAATCTTACTCC
CCTGAATTGAAGCCACGACGA
Found at i:8118945 original size:201 final size:201
Alignment explanation
Indices: 8118714--8119099 Score: 546
Period size: 201 Copynumber: 1.9 Consensus size: 201
8118704 ATGACGGATC
8118714 TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAACTACGACGACGAATCTAGTTTCCCCAAT-A
1 TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAACTACGACGACGAATCTAGTTTCCCC-ATCA
* * * *
8118778 TTGCAATT-AAAAAGATTGAAGCCGC-AACGGCAAATTTTACTTCCCTGGCGGTGTAGTGGAGCA
65 TTGCAATTGAAAAAG-TTGAAGCCGCAAACGACAAATTTTACTTCCCTGGCAGTATAGTGGAACA
* * *
8118841 GATTGAAGCTACGACGGTGAATCTCGTTTCCCGAACATTGCAAT-TAAAAAGATTGAAGCCACAA
129 GACTGAAGCTACGACGG-CAATCTCGTTTCCCCAACATTGCAATGT-AAAAGATTGAAGCCACAA
8118905 ACAACAAATT
192 ACAACAAATT
* * * *
8118915 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCATCAT
1 TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAACTACGACGACGAATCTAGTTTCCCCATCAT
* *** * *
8118980 TGTAATTGAAGCCGTTGAAGCCGCAAATGACAAATTTTACTTCCCTGGTAGTATAGTGGAACAGA
66 TGCAATTGAAAAAGTTGAAGCCGCAAACGACAAATTTTACTTCCCTGGCAGTATAGTGGAACAGA
*
8119045 CTGAAGCTACGACGGCAATCTTGTTTCCCCAACATTGCAATGTAAAAGATTGAAG
131 CTGAAGCTACGACGGCAATCTCGTTTCCCCAACATTGCAATGTAAAAGATTGAAG
8119100 ATGGCAAGTC
Statistics
Matches: 163, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
200 2 0.01
201 109 0.67
202 52 0.32
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (201 bp):
TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAACTACGACGACGAATCTAGTTTCCCCATCAT
TGCAATTGAAAAAGTTGAAGCCGCAAACGACAAATTTTACTTCCCTGGCAGTATAGTGGAACAGA
CTGAAGCTACGACGGCAATCTCGTTTCCCCAACATTGCAATGTAAAAGATTGAAGCCACAAACAA
CAAATT
Found at i:8118954 original size:101 final size:101
Alignment explanation
Indices: 8118714--8119099 Score: 528
Period size: 101 Copynumber: 3.8 Consensus size: 101
8118704 ATGACGGATC
* * * * *
8118714 TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAACTACGACGACGAATCTAGTTTCCCCAATAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
*
8118779 TGCAATTAAAAAGATTGAAGCCGC-AACGGCAAATT
66 TGCAATTAAAAAGATTGAAGCCGCAAACGACAAATT
* * *
8118814 TTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACGACGGTGAATCTCGTTTCCCGAACAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
* *
8118879 TGCAATTAAAAAGATTGAAGCCACAAACAACAAATT
66 TGCAATTAAAAAGATTGAAGCCGCAAACGACAAATT
*
8118915 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCATCAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
* *** *
8118980 TGTAATTGAAGCCG-TTGAAGCCGCAAATGACAAATT
66 TGCAATT-AAAAAGATTGAAGCCGCAAACGACAAATT
** * * *
8119016 TTACTTCCCTGGTAGTATAGTGGAACAGACTGAAGCTACGACGGC-AATCTTGTTTCCCCAACAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
8119080 TGCAATGT-AAAAGATTGAAG
66 TGCAAT-TAAAAAGATTGAAG
8119100 ATGGCAAGTC
Statistics
Matches: 250, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
99 2 0.01
100 108 0.43
101 137 0.55
102 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (101 bp):
TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
TGCAATTAAAAAGATTGAAGCCGCAAACGACAAATT
Found at i:8119688 original size:19 final size:19
Alignment explanation
Indices: 8119664--8119755 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
8119654 AATCTTCAAG
*
8119664 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
*
8119683 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8119702 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
* *
8119721 GATATGTAATCTTAAATAT
1 GATATGCAATCTTAGATAT
8119740 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8119756 ATATATGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 64 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8119708 original size:38 final size:38
Alignment explanation
Indices: 8119664--8119778 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
8119654 AATCTTCAAG
*
8119664 GATATGCAATTTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
* *
8119702 GATATGCAATCTTAGGTATGATATGTAATCTTAAATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
8119740 GATATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTAG---ATATGA-TATGTAATCTTAGA
8119779 GATTTAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 50 0.75
41 5 0.07
42 12 0.18
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.41
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:8122030 original size:21 final size:22
Alignment explanation
Indices: 8122004--8122050 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8121994 CTCTGCTCAA
*
8122004 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
8122025 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
8122047 ACTC
1 ACTC
8122051 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:8126514 original size:68 final size:68
Alignment explanation
Indices: 8126369--8126532 Score: 177
Period size: 68 Copynumber: 2.4 Consensus size: 68
8126359 TTAAAATTTC
* * * *
8126369 TTTAGAAGTAAAAGAATAAATAAGTGAATAATAGATAAAACAAATGTAAACATTATTAAATTTAA
1 TTTAAAAGTAAAAGAAT-AATAAATAAATAATAGATAAAACAAATGTAAACAATATTAAATTTAA
*
8126434 GCAT
65 ACAT
* ** ****
8126438 TTGAAAAGTAAAAGAATAATAAATAAATAAATAGATAAAGTAAATGTTCGTAATATT-AATTTAA
1 TTTAAAAGTAAAAGAATAATAAATAAAT-AATAGATAAAACAAATGTAAACAATATTAAATTTAA
*
8126502 ATAT
65 ACAT
*
8126506 TTTAAAAGTAAAAGAATGATAAATAAA
1 TTTAAAAGTAAAAGAATAATAAATAAA
8126533 AGTAAAAAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
68 43 0.54
69 36 0.46
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (68 bp):
TTTAAAAGTAAAAGAATAATAAATAAATAATAGATAAAACAAATGTAAACAATATTAAATTTAAA
CAT
Found at i:8128103 original size:45 final size:43
Alignment explanation
Indices: 8127992--8128107 Score: 110
Period size: 45 Copynumber: 2.6 Consensus size: 43
8127982 GCTTCGATCC
* * *
8127992 ACTCCACTGTAATTTCAGGGAGA-AGAGACTTGTAGCTTCAATCT
1 ACTCCACTG-AATTTCAGGGAGATA-AGAATTGTAACTTCAACCT
* * *
8128036 ACTCTACTAGAACTTT-AAGGAGATAAGAATTGGTAATTTCAACCT
1 ACTCCACT-GAA-TTTCAGGGAGATAAGAATT-GTAACTTCAACCT
8128081 ACTCCACTGCAATTTCAGGGAGATAAG
1 ACTCCACTG-AATTTCAGGGAGATAAG
8128108 GTTTGCAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
44 24 0.41
45 34 0.59
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (43 bp):
ACTCCACTGAATTTCAGGGAGATAAGAATTGTAACTTCAACCT
Found at i:8128336 original size:45 final size:45
Alignment explanation
Indices: 8128287--8128951 Score: 175
Period size: 44 Copynumber: 14.1 Consensus size: 45
8128277 ACTACAATGC
* * *
8128287 CAGGGAAATAATATTCGTTGTCTTCAGTCTGCTCCACTGCAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
** * * * *
8128332 CAGGGAGATAAGGCT-GGTGACATCAATCTACTCCACTGCAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
** * * * **
8128376 CAGAAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGC
1 CAGGGAGATAAGATTCG-------TTGT--CTTCAATCTGCTCCACTGCAACTT
*
8128430 CAGGGAGATAAGATTCGTTGTCTTCAGTCTGCTCCACTGCAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
* * * * *
8128475 TAGGGAGATAAG--TCTGGTGGCTTCAATTTGCTCCACTACAACTT
1 CAGGGAGATAAGATTC-GTTGTCTTCAATCTGCTCCACTGCAACTT
** ** * * * *
8128519 CAGAAAGATAAGATCCACCATAATTTGTAGCTTTAAAT-TGTTCCACTACAAC-G
1 CAGGGAGATAAGAT------T-CGTTGT--C-TTCAATCTGCTCCACTGCAACTT
* * * * * * *
8128572 CTAGGGAAATTAGATTCGCTGTCTTCAGTTTGCTCCGCAGCAACTT
1 C-AGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
* * * * *
8128618 TAGAGAGAT-A-ATGCTGGTGGCTTCAATCTGCTCCACTGCAACTT
1 CAGGGAGATAAGATTC-GTTGTCTTCAATCTGCTCCACTGCAACTT
* * * * ** *
8128662 CAGGAAGATAAGATCCACCGTAATTTATAGCTTTAATCT-CTTCCACTGTTAC-G
1 CAGGGAGATAAGAT---TCG----TTGT--CTTCAATCTGC-TCCACTGCAACTT
* * * * *
8128715 CTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCGCTGCAACTT
1 C-AGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
* * * *
8128761 CAGGGAGATAAGGTT-GGTGGCTTTAATCTGCTCCACTGCAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
* * * * * *
8128805 CAGGAAGATAAGATCCACCGTAATTTGTAACTTTAATATGTTCCACTGCAACGT
1 CAGGGAGATAAGAT---TCG----TTGT--CTTCAATCTGCTCCACTGCAACTT
* * * * * *
8128859 GAAGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
* ** * * *
8128904 CAGTGAGATAAGGCT-GGTGGCTTCAA-CTTGCTCCACTACAACTT
1 CAGGGAGATAAGATTCGTTGTCTTCAATC-TGCTCCACTGCAACTT
8128948 CAGG
1 CAGG
8128952 AAGAAAATAT
Statistics
Matches: 436, Mismatches: 131, Indels: 107
0.65 0.19 0.16
Matches are distributed among these distances:
43 6 0.01
44 161 0.37
45 115 0.26
46 4 0.01
47 12 0.03
48 3 0.01
49 1 0.00
51 4 0.01
52 8 0.02
53 3 0.01
54 114 0.26
55 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
CAGGGAGATAAGATTCGTTGTCTTCAATCTGCTCCACTGCAACTT
Found at i:8128466 original size:143 final size:143
Alignment explanation
Indices: 8128117--8128955 Score: 1123
Period size: 143 Copynumber: 5.9 Consensus size: 143
8128107 GGTTTGCAAA
* * * * *
8128117 TTGTAGCTTTAATATGTTCCACTGTAATGTTAGGGAAATAAGATTCGC--TCTTCAGTTTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
** * * * *
8128180 ACTTTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATTTGCTCCACTACAACTACAGGAAGGTAA
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
8128245 GATCTACCATAA-
131 GATCCACCATAAT
* * * * *
8128257 TTGTAGCTTTAATCTGTTCCACTACAATGCCAGGGAAATAATATTCGTTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * *
8128322 ACTGCAACTTCAGGGAGATAAGGCTGGTGACATCAATCTACTCCACTGCAACTTCAGAAAGATAA
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
8128387 GATCCGCCATAAT
131 GATCCACCATAAT
* * *
8128400 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAGATAAGATTCGTTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * *
8128465 ACTGCAACTTTAGGGAGATAAGTCTGGTGGCTTCAATTTGCTCCACTACAACTTCAGAAAGATAA
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
8128530 GATCCACCATAAT
131 GATCCACCATAAT
* * *
8128543 TTGTAGCTTTAAAT-TGTTCCACTACAACGCTAGGGAAATTAGATTCGCTGTCTTCAGTTTGCTC
1 TTGTAGCTTT-AATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTC
* * * * *
8128607 CGCAGCAACTTTAGAGAGATAATGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
65 CACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
*
8128672 AGATCCACCGTAAT
130 AGATCCACCATAAT
* * ** *
8128686 TTATAGCTTTAATCTCTTCCACTGTTACGCTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * *
8128751 GCTGCAACTTCAGGGAGATAAGGTTGGTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAA
66 ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
8128816 GATCCACCGTAAT
131 GATCCACCATAAT
* * * *
8128829 TTGTAACTTTAATATGTTCCACTGCAACG-TGAAGGAAATAAGATTCGCTATCTTCAGTCTGCTC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCT-AGGGAAATAAGATTCGCTGTCTTCAGTCTGCTC
* *
8128893 CACTGCAACTTCAGTGAGATAAGGCTGGTGGCTTCAA-CTTGCTCCACTACAACTTCAGGAAGA
65 CACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATC-TGCTCCACTGCAACTTCAGGAAGA
8128956 AAATATCTTC
Statistics
Matches: 619, Mismatches: 73, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
140 41 0.07
142 84 0.14
143 491 0.79
144 3 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
ACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
GATCCACCATAAT
Found at i:8132483 original size:7 final size:7
Alignment explanation
Indices: 8132471--8132508 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
8132461 AAGTTGGTTA
8132471 TTAGGGT
1 TTAGGGT
8132478 TTAGGGT
1 TTAGGGT
**
8132485 TTACAGT
1 TTAGGGT
8132492 TTAGGGT
1 TTAGGGT
8132499 TTAGGGT
1 TTAGGGT
8132506 TTA
1 TTA
8132509 CTATCAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.18, C:0.03, G:0.34, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:8133369 original size:20 final size:23
Alignment explanation
Indices: 8133330--8133373 Score: 67
Period size: 20 Copynumber: 2.0 Consensus size: 23
8133320 GTAAATCATG
8133330 TTATTCTTAGATTATTGAATGTT
1 TTATTCTTAGATTATTGAATGTT
8133353 TTATTCTTA-A-T-TTGAATGTT
1 TTATTCTTAGATTATTGAATGTT
8133373 T
1 T
8133374 AAAACTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 1 0.05
22 1 0.05
23 9 0.43
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (23 bp):
TTATTCTTAGATTATTGAATGTT
Found at i:8139194 original size:168 final size:168
Alignment explanation
Indices: 8138911--8139250 Score: 563
Period size: 168 Copynumber: 2.0 Consensus size: 168
8138901 TGAAGTCCAT
* * * * *
8138911 AAAGTAAAGGTGGATGTAATTGAAAGATTACCAGCCCCAATTACTGTGAAAGGAGTTAGAAGTTT
1 AAAGAAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
* *
8138976 CTTAGGCCATGTCGATTTTTACTGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTGT
66 CTTAGGCCATGCCGATTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTGT
*
8139041 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAC
131 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
*
8139079 AAAGAAAAGGTGGACGTAATTGAAAGATTACCGGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
1 AAAGAAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
* * * *
8139144 CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATTAAGGATTTCTCAAAAATTTCTATGCCGTTGT
66 CTTAGGCCATGCCGATTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTGT
8139209 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
131 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
8139247 AAAG
1 AAAG
8139251 CATGTTTAGA
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
168 159 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (168 bp):
AAAGAAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
CTTAGGCCATGCCGATTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTGT
GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
Found at i:8142154 original size:165 final size:165
Alignment explanation
Indices: 8141877--8142206 Score: 543
Period size: 165 Copynumber: 2.0 Consensus size: 165
8141867 TTTTAATTGA
*
8141877 TGAAGAAGTGAAAGAGCGATTTGATTCAATCTTCAAGCATAAACCTATGATGCCGCAAAAAGGTT
1 TGAAAAAGTGAAAGAGCGATTTGATTCAATCTTCAAGCATAAACCTATGATGCCGCAAAAAGGTT
* *
8141942 TTAACCTAAAGAGCTATGATGTGATGGTTGTCCCTATGATAATTAGAAAGATAATCAATGCTTTC
66 TTAACCTAAAGAGCAATGATGTGATGGTTGTCCCTATGATAATTAGAAAGATAATCAATGCTCTC
* *
8142007 GAGTGGGAATGATTCTGTGATGCTCGTTCACTTCC
131 AAGTGGGAACGATTCTGTGATGCTCGTTCACTTCC
* * *
8142042 TGAAAAAGTGAAAGAGCGATTTGATTCAATCTTCAAGCATCAACTTATGATGCCGGAAAAAGGTT
1 TGAAAAAGTGAAAGAGCGATTTGATTCAATCTTCAAGCATAAACCTATGATGCCGCAAAAAGGTT
* * * *
8142107 TTAACCTAAAGAGCAATGATGTGATGGTTTTCCCTTTGCTAATTAGAAAGATAATCCATGCTCTC
66 TTAACCTAAAGAGCAATGATGTGATGGTTGTCCCTATGATAATTAGAAAGATAATCAATGCTCTC
*
8142172 AAGTGGGAACGATTTTGTGATGCTCGTTCACTTCC
131 AAGTGGGAACGATTCTGTGATGCTCGTTCACTTCC
8142207 CGATGATGAA
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
165 152 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (165 bp):
TGAAAAAGTGAAAGAGCGATTTGATTCAATCTTCAAGCATAAACCTATGATGCCGCAAAAAGGTT
TTAACCTAAAGAGCAATGATGTGATGGTTGTCCCTATGATAATTAGAAAGATAATCAATGCTCTC
AAGTGGGAACGATTCTGTGATGCTCGTTCACTTCC
Found at i:8148476 original size:23 final size:22
Alignment explanation
Indices: 8148415--8148476 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
8148405 GAGTAAAATA
*
8148415 ACAAGAAATATAAGAAATAACAT
1 ACAA-AAATATAAGAAATAACAG
*
8148438 ACAAAAAT-TGTA-AAATAACACG
1 ACAAAAATAT-AAGAAATAACA-G
8148460 ACAAAAATATAAGAAAT
1 ACAAAAATATAAGAAAT
8148477 TAAAGCGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
21 9 0.28
22 14 0.44
23 9 0.28
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.18
Consensus pattern (22 bp):
ACAAAAATATAAGAAATAACAG
Found at i:8148705 original size:17 final size:17
Alignment explanation
Indices: 8148685--8148731 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
8148675 TTAAATATCT
*
8148685 AAAATAAATAAACAAGA
1 AAAATAAATAAACAACA
* *
8148702 AAAATAAACAAACAACT
1 AAAATAAATAAACAACA
8148719 AAAATAAATAAAC
1 AAAATAAATAAAC
8148732 CAATAAGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.74, C:0.11, G:0.02, T:0.13
Consensus pattern (17 bp):
AAAATAAATAAACAACA
Found at i:8151326 original size:27 final size:27
Alignment explanation
Indices: 8151265--8151331 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 27
8151255 TTACCGTATA
8151265 ACATAATTGTGGAAAGTCTGTCAAGACT
1 ACATAA-TGTGGAAAGTCTGTCAAGACT
* *
8151293 ATC-TAATGTGGAAAG-CTCGTGAGGACT
1 A-CATAATGTGGAAAGTCT-GTCAAGACT
*
8151320 ACATAATATGGA
1 ACATAATGTGGA
8151332 GAAAGTCCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
26 3 0.09
27 25 0.76
28 4 0.12
29 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (27 bp):
ACATAATGTGGAAAGTCTGTCAAGACT
Found at i:8154661 original size:42 final size:42
Alignment explanation
Indices: 8154592--8154740 Score: 167
Period size: 42 Copynumber: 3.6 Consensus size: 42
8154582 TCTCATGAGC
* * * *
8154592 TTCAGTT-AACTCATATGAGTTTCAGTTTAACCCTAATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
*
8154633 TTCAGTTCAGCTCTT-TCGAGCTTCAGTTTAACCCTTCTGGGT
1 TTCAGTTCAGCTCTTAT-GAGCTTCAGTTTAACCCTTATGGGT
* * *
8154675 TTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
* * * *
8154717 TTCTGTTTAGCACTTATGTGCTTC
1 TTCAGTTCAGCTCTTATGAGCTTC
8154741 TGTGCAGCCT
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
41 8 0.09
42 83 0.90
43 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (42 bp):
TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
Found at i:8154711 original size:21 final size:21
Alignment explanation
Indices: 8154650--8154743 Score: 62
Period size: 21 Copynumber: 4.5 Consensus size: 21
8154640 CAGCTCTTTC
* * *
8154650 GAGCTTCAGTTTAACCCTTCT
1 GAGCTTCTGTTCAACCCTTAT
* * * * *
8154671 GGGTTTCCGTTCAGCTCTTAT
1 GAGCTTCTGTTCAACCCTTAT
8154692 GAGCTTCTGTTCAACCCTTAT
1 GAGCTTCTGTTCAACCCTTAT
* * * * *
8154713 GGGTTTCTGTTTAGCACTTAT
1 GAGCTTCTGTTCAACCCTTAT
*
8154734 GTGCTTCTGT
1 GAGCTTCTGT
8154744 GCAGCCTTTA
Statistics
Matches: 54, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
GAGCTTCTGTTCAACCCTTAT
Found at i:8155751 original size:20 final size:22
Alignment explanation
Indices: 8155722--8155763 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
8155712 GTGTCCCTTA
8155722 ATTTTAAG-AAAATTT-TTGAG
1 ATTTTAAGAAAAATTTCTTGAG
*
8155742 ATTTTGAGAAAAATTTCTTGAG
1 ATTTTAAGAAAAATTTCTTGAG
8155764 TATCCAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 7 0.37
22 5 0.26
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (22 bp):
ATTTTAAGAAAAATTTCTTGAG
Found at i:8156405 original size:17 final size:18
Alignment explanation
Indices: 8156378--8156411 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8156368 TATTATAATA
*
8156378 ATAATTAAAATGAAAGAT
1 ATAATTAAAATAAAAGAT
8156396 ATAA-TAAAATAAAAGA
1 ATAATTAAAATAAAAGA
8156412 AAGTGGAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (18 bp):
ATAATTAAAATAAAAGAT
Found at i:8156413 original size:21 final size:24
Alignment explanation
Indices: 8156371--8156414 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8156361 TATATATTAT
8156371 TATAATAATAATTAAAATGAAAGA
1 TATAATAATAATTAAAATGAAAGA
8156395 TATAATAA-AA-TAAAA-GAAAG
1 TATAATAATAATTAAAATGAAAG
8156415 TGGAGACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 5 0.25
23 2 0.10
24 8 0.40
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (24 bp):
TATAATAATAATTAAAATGAAAGA
Found at i:8157643 original size:43 final size:43
Alignment explanation
Indices: 8157579--8157664 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
8157569 TATGTGATTG
8157579 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
* *
8157622 ATATTGAAATGGCAAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
8157665 TGAGATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
Found at i:8157648 original size:16 final size:16
Alignment explanation
Indices: 8157584--8157648 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
8157574 GATTGATATT
*
8157584 GAAATGGCAAAGATGA
1 GAAATGGCAAATATGA
8157600 GAAAT-G--AATATGA
1 GAAATGGCAAATATGA
* *
8157613 G--ATGAGAAAATAT-T
1 GAAATG-GCAAATATGA
8157627 GAAATGGCAAATATGA
1 GAAATGGCAAATATGA
8157643 GAAATG
1 GAAATG
8157649 ATTATGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.21
14 1 0.03
15 13 0.34
16 14 0.37
ACGTcount: A:0.51, C:0.03, G:0.26, T:0.20
Consensus pattern (16 bp):
GAAATGGCAAATATGA
Found at i:8159032 original size:49 final size:49
Alignment explanation
Indices: 8158960--8159056 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
8158950 TCTAGAAGGG
* *
8158960 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGT
*
8159009 ATAAATAGTGATAAGAGTGTAGACAGTGGAATACCAAGTTTAGAAATG
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
8159057 CATAGCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGT
Found at i:8160475 original size:86 final size:87
Alignment explanation
Indices: 8160308--8160558 Score: 425
Period size: 88 Copynumber: 2.9 Consensus size: 87
8160298 GGGGGGGGGA
* *
8160308 GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAA-CAAAAAACTCATTTTTCCAGGTTGATT
1 GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAACCCATTTTTCCAGGTTGATT
8160372 TTGGGACGTGGGTAAATTA-GG
66 TTGGGACGTGGGTAAATTAGGG
* *
8160393 GGGGAAGCCGACAATTAAGGTCTATTGATGTTAACAATAAAAAAACCCATTTTTCCAAGTTGATT
1 GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAACCCATTTTTCCAGGTTGATT
8160458 TTGGGACGTGGGTAAATTAGGG
66 TTGGGACGTGGGTAAATTAGGG
* *
8160480 GGTGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAGAACCCCTTTTTCCAGGTTGAT
1 GG-GGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAACCCATTTTTCCAGGTTGAT
8160545 TTTGGGACGTGGGT
65 TTTGGGACGTGGGT
8160559 TTCAACATTG
Statistics
Matches: 155, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
85 36 0.23
86 43 0.28
87 4 0.03
88 72 0.46
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (87 bp):
GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAACCCATTTTTCCAGGTTGATT
TTGGGACGTGGGTAAATTAGGG
Found at i:8160917 original size:16 final size:17
Alignment explanation
Indices: 8160886--8160918 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8160876 GTTATCCATA
*
8160886 AGGTTTTTTTTGTGTTT
1 AGGTTTTTGTTGTGTTT
8160903 AGGTTTTTGTT-TGTTT
1 AGGTTTTTGTTGTGTTT
8160919 TTTTAGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.06, C:0.00, G:0.24, T:0.70
Consensus pattern (17 bp):
AGGTTTTTGTTGTGTTT
Found at i:8161468 original size:31 final size:30
Alignment explanation
Indices: 8161411--8161477 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
8161401 ATAAACTTAT
*
8161411 TAATTTGGTGCAATTGTACACATGAAACTC
1 TAATTTGGTGCAAATGTACACATGAAACTC
* * * *
8161441 TAATTGTGGTTCAAATGTATACTTGAAACTT
1 TAATT-TGGTGCAAATGTACACATGAAACTC
8161472 TAATTT
1 TAATTT
8161478 TGATTTGATC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (30 bp):
TAATTTGGTGCAAATGTACACATGAAACTC
Found at i:8161636 original size:22 final size:24
Alignment explanation
Indices: 8161610--8161655 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
8161600 ATAAGAATTG
8161610 GATCAAATT-CAATTT-TTTTTAT
1 GATCAAATTACAATTTATTTTTAT
* *
8161632 GATCACATTACTATTTATTTTTAT
1 GATCAAATTACAATTTATTTTTAT
8161656 AAAATATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 5 0.25
24 7 0.35
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.54
Consensus pattern (24 bp):
GATCAAATTACAATTTATTTTTAT
Found at i:8162805 original size:19 final size:19
Alignment explanation
Indices: 8162777--8162824 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
8162767 TTACAATGTT
*
8162777 AATAAGTTTTCTA-ATTTAA
1 AATATGTTTT-TATATTTAA
*
8162796 AATAT-TTTTTATTTTTAA
1 AATATGTTTTTATATTTAA
8162814 AATATGTTTTT
1 AATATGTTTTT
8162825 GATTATGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 14 0.56
19 9 0.36
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
AATATGTTTTTATATTTAA
Found at i:8165225 original size:13 final size:13
Alignment explanation
Indices: 8165209--8165241 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8165199 TTATTTTAAA
8165209 ATTTTAAAAAAAT
1 ATTTTAAAAAAAT
*
8165222 ATTTTAAAAATAT
1 ATTTTAAAAAAAT
8165235 -TTTTAAA
1 ATTTTAAA
8165242 TTAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTTAAAAAAAT
Found at i:8180512 original size:7 final size:7
Alignment explanation
Indices: 8180500--8180525 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8180490 CAACAGGCCC
8180500 AAAACCT
1 AAAACCT
8180507 AAAACCT
1 AAAACCT
8180514 AAAACCT
1 AAAACCT
8180521 AAAAC
1 AAAAC
8180526 TTGAACCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAACCT
Found at i:8183607 original size:19 final size:19
Alignment explanation
Indices: 8183579--8183624 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
8183569 TAATATGTTA
*
8183579 TATAAGAAAATGATGAGAT
1 TATAAGAAAATGATGAAAT
*
8183598 TATGAGAAAATGATGAAAT
1 TATAAGAAAATGATGAAAT
8183617 TATAAGAA
1 TATAAGAA
8183625 GAAAAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (19 bp):
TATAAGAAAATGATGAAAT
Found at i:8192145 original size:42 final size:42
Alignment explanation
Indices: 8192098--8192178 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
8192088 AAGCTTTTCA
* *
8192098 AAGTTGGAATCTTCATTCTATTGATGTAATCAAAGAGTTAGG
1 AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTTAGG
*
8192140 AAGTTGGAATCTTCATTTTAATGATGCAATCAAAGAGTT
1 AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTT
8192179 TGATTTTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.36
Consensus pattern (42 bp):
AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTTAGG
Found at i:8197993 original size:33 final size:33
Alignment explanation
Indices: 8197947--8198259 Score: 156
Period size: 33 Copynumber: 8.7 Consensus size: 33
8197937 TTAACCGTTA
* *
8197947 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
8197981 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGAT
1 TCGGGGAATCAGCACTTAGCAA---C---CAC---CAATGAT
8198023 AT-GGTGGAATCAGCACTTAGCAACCACCAATGAT
1 -TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
8198057 TCGGGGAATCAGCACTTAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
* *
8198084 TGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGAT
1 TCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--T---GAT
*
8198126 ACGGTGGAATCAGCACTTAGCAACCACCAATGGA-
1 TCGG-GGAATCAGCACTTAGCAACCACCAAT-GAT
* *
8198160 TCGGGGAATCAACACTTAGCAACCCCCTTTATATTTAAAGAT
1 TCGGGGAATCAGCACTTAGCAACCACC---A-A--T---GAT
* * * *
8198202 ACGGTGGAATCAACATTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
8198236 TCGAGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
8198260 CCTTCATATT
Statistics
Matches: 220, Mismatches: 21, Indels: 77
0.69 0.07 0.24
Matches are distributed among these distances:
27 22 0.10
28 2 0.01
29 1 0.00
31 1 0.00
32 2 0.01
33 77 0.35
34 19 0.09
35 2 0.01
36 2 0.01
37 6 0.03
39 6 0.03
40 4 0.02
41 2 0.01
42 16 0.07
43 58 0.26
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:8198141 original size:103 final size:103
Alignment explanation
Indices: 8197983--8198185 Score: 354
Period size: 103 Copynumber: 2.0 Consensus size: 103
8197973 CCAGTGATTC
* *
8197983 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
*
8198048 ACCAAT-GATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 ACCAATGGA-TCGGGGAATCAACACTTAGCAACCCCTTG
*
8198086 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
8198151 ACCAATGGATCGGGGAATCAACACTTAGCAACCCC
66 ACCAATGGATCGGGGAATCAACACTTAGCAACCCC
8198186 CTTTATATTT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 93 0.98
104 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
ACCAATGGATCGGGGAATCAACACTTAGCAACCCCTTG
Found at i:8198149 original size:43 final size:42
Alignment explanation
Indices: 8198088--8198226 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 42
8198078 ACCCCTTGGG
*
8198088 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGT
1 GGAATCAACACTTAGCAACCCCCTTCA-ATTTAAAGATACGGT
* * *
8198131 GGAATCAGCACTTAGCAA-CCAC--CAA--T--GGAT-CGG-
1 GGAATCAACACTTAGCAACCCCCTTCAATTTAAAGATACGGT
*
8198164 GGAATCAACACTTAGCAACCCCCTTTATATTTAAAGATACGGT
1 GGAATCAACACTTAGCAACCCCCTTCA-ATTTAAAGATACGGT
*
8198207 GGAATCAACATTTAGCAACC
1 GGAATCAACACTTAGCAACC
8198227 ACCAATGAGT
Statistics
Matches: 79, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
33 17 0.22
34 6 0.08
35 3 0.04
36 1 0.01
37 2 0.03
39 2 0.03
40 2 0.03
41 3 0.04
42 6 0.08
43 37 0.47
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (42 bp):
GGAATCAACACTTAGCAACCCCCTTCAATTTAAAGATACGGT
Found at i:8198182 original size:76 final size:76
Alignment explanation
Indices: 8198086--8198265 Score: 283
Period size: 76 Copynumber: 2.4 Consensus size: 76
8198076 CAACCCCTTG
*
8198086 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
8198151 ACCAATG-GATC
66 ACCAATGAG-TC
* * * *
8198162 GGGGAATCAACACTTAGCAACCCCCTTTATATTTAAAGATACGGTGGAATCAACATTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
8198227 ACCAATGAGTC
66 ACCAATGAGTC
*
8198238 GAGGAATCAGCACTTAGCAA-CCCCTTCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCA
8198266 TATTCAATGT
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
75 7 0.07
76 87 0.92
77 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
ACCAATGAGTC
Found at i:8207232 original size:33 final size:33
Alignment explanation
Indices: 8207186--8207498 Score: 156
Period size: 33 Copynumber: 8.7 Consensus size: 33
8207176 TTAACCGTTA
* *
8207186 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
8207220 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGAT
1 TCGGGGAATCAGCACTTAGCAA---C---CAC---CAATGAT
*
8207262 AT-GGTGGAATCAGCACTTAGCAACCACCAATCAT
1 -TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
8207296 TCGGGGAATCAGCACTTAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
* *
8207323 TGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGAT
1 TCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--T---GAT
*
8207365 ACGGTGGAATCAGCACTTAGCAACCACCAATGGA-
1 TCGG-GGAATCAGCACTTAGCAACCACCAAT-GAT
* *
8207399 TAGGGGAATCAGCACTTAGCAACCCCCTTTATATTTAAAGAT
1 TCGGGGAATCAGCACTTAGCAACCACC---A-A--T---GAT
* * * *
8207441 GCGGTGGAATCAACATTTAGCAACCACCAATGAA
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
8207475 TCGGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
8207499 CCTTCATATT
Statistics
Matches: 218, Mismatches: 23, Indels: 77
0.69 0.07 0.24
Matches are distributed among these distances:
27 22 0.10
28 2 0.01
29 1 0.00
31 1 0.00
32 2 0.01
33 78 0.36
34 18 0.08
35 2 0.01
36 2 0.01
37 6 0.03
39 6 0.03
40 4 0.02
41 2 0.01
42 15 0.07
43 57 0.26
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:8207380 original size:103 final size:103
Alignment explanation
Indices: 8207222--8207424 Score: 345
Period size: 103 Copynumber: 2.0 Consensus size: 103
8207212 CCAGTGATTC
* *
8207222 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
*
8207287 ACCAAT-CATTCGGGGAATCAGCACTTAGCAACCCCTTG
66 ACCAATGCA-TAGGGGAATCAGCACTTAGCAACCCCTTG
*
8207325 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
*
8207390 ACCAATGGATAGGGGAATCAGCACTTAGCAACCCC
66 ACCAATGCATAGGGGAATCAGCACTTAGCAACCCC
8207425 CTTTATATTT
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 93 0.99
104 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
ACCAATGCATAGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:8207388 original size:43 final size:42
Alignment explanation
Indices: 8207327--8207465 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 42
8207317 ACCCCTTGGG
8207327 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCA-ATTTAAAGATACGGT
* *
8207370 GGAATCAGCACTTAGCAA-CCAC--CAA--T--GGATA-GG-
1 GGAATCAGCACTTAGCAACCCCCTTCAATTTAAAGATACGGT
* *
8207403 GGAATCAGCACTTAGCAACCCCCTTTATATTTAAAGATGCGGT
1 GGAATCAGCACTTAGCAACCCCCTTCA-ATTTAAAGATACGGT
* *
8207446 GGAATCAACATTTAGCAACC
1 GGAATCAGCACTTAGCAACC
8207466 ACCAATGAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
33 18 0.23
34 5 0.06
35 4 0.05
36 1 0.01
37 2 0.03
39 2 0.03
40 2 0.03
41 3 0.04
42 5 0.06
43 36 0.46
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCAATTTAAAGATACGGT
Found at i:8207420 original size:76 final size:76
Alignment explanation
Indices: 8207325--8207504 Score: 290
Period size: 76 Copynumber: 2.4 Consensus size: 76
8207315 CAACCCCTTG
*
8207325 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
*
8207390 ACCAATGGATA
66 ACCAATGAATA
* * * *
8207401 GGGGAATCAGCACTTAGCAACCCCCTTTATATTTAAAGATGCGGTGGAATCAACATTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
*
8207466 ACCAATGAATC
66 ACCAATGAATA
8207477 GGGGAATCAGCACTTAGCAA-CCCCTTCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCA
8207505 TATTCAATGT
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
75 7 0.07
76 89 0.93
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAGATACGGTGGAATCAACACTTAGCAACC
ACCAATGAATA
Found at i:8207789 original size:84 final size:84
Alignment explanation
Indices: 8207648--8207814 Score: 325
Period size: 84 Copynumber: 2.0 Consensus size: 84
8207638 ATATATTGAA
8207648 TAATATCAAAATAATGCATTAAATCACATGTTTACTTACCTCGGTGCAAAATATCGAAATTTTGC
1 TAATATCAAAATAATGCATTAAATCACATGTTTACTTACCTCGGTGCAAAATATCGAAATTTTGC
8207713 AATTTACTCCACTACCTTT
66 AATTTACTCCACTACCTTT
*
8207732 TAATATCAAAATAATGCATTAAATCACATGTTTACTTACCTCGGTGCAAAATATCGAAATTTTGT
1 TAATATCAAAATAATGCATTAAATCACATGTTTACTTACCTCGGTGCAAAATATCGAAATTTTGC
8207797 AATTTACTCCACTACCTT
66 AATTTACTCCACTACCTT
8207815 CTCTTTTCCC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (84 bp):
TAATATCAAAATAATGCATTAAATCACATGTTTACTTACCTCGGTGCAAAATATCGAAATTTTGC
AATTTACTCCACTACCTTT
Found at i:8207944 original size:29 final size:30
Alignment explanation
Indices: 8207911--8207971 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
8207901 TAATCCACCA
*
8207911 CCCAACTTTTTG-AAAATTACAATATTGCC
1 CCCAAATTTTTGCAAAATTACAATATTGCC
* * *
8207940 CCCAAATTTTTGCATAATTACACTTTTGCC
1 CCCAAATTTTTGCAAAATTACAATATTGCC
8207970 CC
1 CC
8207972 AAGCTCGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (30 bp):
CCCAAATTTTTGCAAAATTACAATATTGCC
Found at i:8211206 original size:17 final size:18
Alignment explanation
Indices: 8211186--8211229 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8211176 TATTAAATTA
*
8211186 TATAAGATATTAT-TTAT
1 TATAAAATATTATCTTAT
8211203 TATAAAATATTATCTTAT
1 TATAAAATATTATCTTAT
8211221 TATAAAATA
1 TATAAAATA
8211230 AAAATCGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
TATAAAATATTATCTTAT
Found at i:8211522 original size:7 final size:7
Alignment explanation
Indices: 8211510--8211539 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8211500 TTATTACATA
8211510 AAAAATG
1 AAAAATG
8211517 AAAAATG
1 AAAAATG
8211524 AAAAATG
1 AAAAATG
8211531 AAAAATG
1 AAAAATG
8211538 AA
1 AA
8211540 TATTTAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:8216081 original size:8 final size:8
Alignment explanation
Indices: 8216068--8216093 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8216058 GCAAAATTAC
8216068 ATTTTAAA
1 ATTTTAAA
8216076 ATTTTAAA
1 ATTTTAAA
8216084 ATTTTAAA
1 ATTTTAAA
8216092 AT
1 AT
8216094 GGTCATAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTTTAAA
Found at i:8217218 original size:15 final size:16
Alignment explanation
Indices: 8217185--8217220 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8217175 GAATAATCAT
*
8217185 TATTTGGAACAATTTG
1 TATTTAGAACAATTTG
8217201 TATTTAGAACAA-TTG
1 TATTTAGAACAATTTG
8217216 TATTT
1 TATTT
8217221 TTTAGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (16 bp):
TATTTAGAACAATTTG
Found at i:8217378 original size:17 final size:17
Alignment explanation
Indices: 8217353--8217388 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8217343 AAGTCTAAAT
8217353 AACTATTATTCAAGAAC
1 AACTATTATTCAAGAAC
* *
8217370 AACTTTTATTTAAGAAC
1 AACTATTATTCAAGAAC
8217387 AA
1 AA
8217389 TCATCATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (17 bp):
AACTATTATTCAAGAAC
Found at i:8219412 original size:28 final size:27
Alignment explanation
Indices: 8219355--8219406 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
8219345 TACAAATGAT
*
8219355 CCAAAGAGAATATTCAAAGTAGCATTAA
1 CCAAAGAGAACATTCAAAG-AGCATTAA
*
8219383 CCAAAGATAACATTCAAA-AGCATT
1 CCAAAGAGAACATTCAAAGAGCATT
8219407 GTAACCTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
28 16 0.73
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (27 bp):
CCAAAGAGAACATTCAAAGAGCATTAA
Found at i:8222216 original size:21 final size:21
Alignment explanation
Indices: 8222192--8222231 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8222182 TTAGGATGGA
*
8222192 TGTTTTAGCATGTTTTGAGCT
1 TGTTTAAGCATGTTTTGAGCT
*
8222213 TGTTTAATCATGTTTTGAG
1 TGTTTAAGCATGTTTTGAG
8222232 TAGGTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.23, T:0.53
Consensus pattern (21 bp):
TGTTTAAGCATGTTTTGAGCT
Found at i:8222241 original size:21 final size:21
Alignment explanation
Indices: 8222200--8222241 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8222190 GATGTTTTAG
* *
8222200 CATGTTTTGAGCTTGTTTAAT
1 CATGTTTTGAGCTGGTATAAT
8222221 CATGTTTTGAG-TAGGTATAAT
1 CATGTTTTGAGCT-GGTATAAT
8222242 TGATGGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (21 bp):
CATGTTTTGAGCTGGTATAAT
Found at i:8229251 original size:13 final size:13
Alignment explanation
Indices: 8229233--8229267 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8229223 CGTGTGACAC
8229233 ACATGGCCACCCT
1 ACATGGCCACCCT
8229246 ACATGGCCACCCT
1 ACATGGCCACCCT
8229259 ACATGGCCA
1 ACATGGCCA
8229268 TGTGTCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.26, C:0.43, G:0.17, T:0.14
Consensus pattern (13 bp):
ACATGGCCACCCT
Found at i:8237682 original size:44 final size:39
Alignment explanation
Indices: 8237585--8237664 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
8237575 TTGATATAAC
8237585 TTATCGAGATCTCTTATTTTCACTATTTTAATATTCAAT
1 TTATCGAGATCTCTTATTTTCACTATTTTAATATTCAAT
8237624 TTATCGAGATCTCTTATTTTCACTATTTTAATATTCAAT
1 TTATCGAGATCTCTTATTTTCACTATTTTAATATTCAAT
8237663 TT
1 TT
8237665 CAGGTATCAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.53
Consensus pattern (39 bp):
TTATCGAGATCTCTTATTTTCACTATTTTAATATTCAAT
Found at i:8246540 original size:27 final size:27
Alignment explanation
Indices: 8246491--8246547 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
8246481 AATAAACACT
8246491 AAAAAATAATTTTAAAAATAAAAAATA
1 AAAAAATAATTTTAAAAATAAAAAATA
*
8246518 AAAAAAT-ATTTTAAAATTAAAAAATA
1 AAAAAATAATTTTAAAAATAAAAAATA
8246544 AAAA
1 AAAA
8246548 TAAAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (27 bp):
AAAAAATAATTTTAAAAATAAAAAATA
Found at i:8256085 original size:117 final size:117
Alignment explanation
Indices: 8255961--8256341 Score: 726
Period size: 117 Copynumber: 3.3 Consensus size: 117
8255951 AAGTAGATTA
* * *
8255961 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
8256026 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
8256078 TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
8256143 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
8256195 TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
*
8256260 TAAATTCATATAAGAATATTTATTAAAAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
8256312 TAAATTATATTTTATAACAATTATGTTAAA
1 TAAATTATATTTTATAACAATTATGTTAAA
8256342 ATATGATTAA
Statistics
Matches: 260, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 260 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (117 bp):
TAAATTATATTTTATAACAATTATGTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
Found at i:8256092 original size:15 final size:17
Alignment explanation
Indices: 8256054--8256087 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8256044 TTTATTAACA
8256054 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256071 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256088 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8256101 original size:16 final size:15
Alignment explanation
Indices: 8256054--8256101 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
8256044 TTTATTAACA
*
8256054 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
8256071 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
8256086 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
8256102 GTTAAATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:8256191 original size:17 final size:17
Alignment explanation
Indices: 8256171--8256204 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8256161 TTTATTAACA
8256171 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256188 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256205 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8256218 original size:16 final size:15
Alignment explanation
Indices: 8256171--8256218 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
8256161 TTTATTAACA
*
8256171 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
8256188 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
8256203 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
8256219 GTTAAATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:8256308 original size:17 final size:17
Alignment explanation
Indices: 8256288--8256321 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8256278 TTTATTAAAA
8256288 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256305 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8256322 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8256335 original size:16 final size:15
Alignment explanation
Indices: 8256288--8256335 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
8256278 TTTATTAAAA
*
8256288 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
8256305 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
8256320 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
8256336 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:8256351 original size:54 final size:53
Alignment explanation
Indices: 8256175--8256361 Score: 167
Period size: 61 Copynumber: 3.3 Consensus size: 53
8256165 TTAACAATTT
8256175 TATTAAATTATATATTTTATTAAATTATATTTTATAACAATTATGTTAAATTATA
1 TATTAAATTATATATTTTATTAAATTATATTTTATAACAATTATGTTAAA--ATA
* * * ** * * * * *
8256230 TTTTAGTATTATATATTATGATTTTATTAGTAAATTCATATAAGAATATTTATTAAAAATTT
1 TATTA-AATTATATATT-TTATTAAATTA-T--ATT-TTATAACAAT-TATGTT-AAAA-TA
8256292 TATTAAATTATATATTTTATTAAATTATATTTTATAACAATTATGTTAAAATA
1 TATTAAATTATATATTTTATTAAATTATATTTTATAACAATTATGTTAAAATA
*
8256345 TGATTAAATTATTTATT
1 T-ATTAAATTATATATT
8256362 ATTTATATTA
Statistics
Matches: 101, Mismatches: 21, Indels: 21
0.71 0.15 0.15
Matches are distributed among these distances:
53 2 0.02
54 18 0.18
55 8 0.08
56 18 0.18
57 11 0.11
58 1 0.01
59 1 0.01
60 11 0.11
61 19 0.19
62 9 0.09
63 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (53 bp):
TATTAAATTATATATTTTATTAAATTATATTTTATAACAATTATGTTAAAATA
Found at i:8256513 original size:39 final size:41
Alignment explanation
Indices: 8256469--8256573 Score: 133
Period size: 44 Copynumber: 2.5 Consensus size: 41
8256459 TTCCTTATGT
* *
8256469 TATTACACCTCTATTCCATTCAACCAAACACAAGAA-TACC
1 TATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACC
8256509 -ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTACC
1 TATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTACC
8256554 TATTACGCCTCTATTCCATT
1 TATTACGCCTCTATTCCATT
8256574 ACGCNNNNNN
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
39 13 0.23
40 1 0.02
41 4 0.07
44 19 0.34
45 5 0.09
46 14 0.25
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (41 bp):
TATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACC
Found at i:8256548 original size:44 final size:46
Alignment explanation
Indices: 8256485--8256575 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
8256475 ACCTCTATTC
*
8256485 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
8256529 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
8256575 C
1 C
8256576 GCNNNNNNNN
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 19 0.43
45 4 0.09
46 21 0.48
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTA
Found at i:8261642 original size:15 final size:17
Alignment explanation
Indices: 8261604--8261637 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8261594 TTTATTAACA
8261604 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8261621 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
8261638 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:8261651 original size:16 final size:15
Alignment explanation
Indices: 8261604--8261651 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
8261594 TTTATTAACA
*
8261604 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
8261621 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
8261636 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
8261652 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:8261829 original size:39 final size:41
Alignment explanation
Indices: 8261784--8261889 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 41
8261774 TTTCCTTATG
*
8261784 CTATTACACCTCTATTCCATTCAACCAAACACAAGAA-TAC
1 CTATTACACCTCTATTCCATTCAACCAAACAAAAGAATTAC
*
8261824 C-ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTAC
1 CTATTACACCTCTATT-C----CATTCAACCAAACAAAAGAATTAC
8261869 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
8261890 ACGCATCTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
39 13 0.23
40 2 0.04
41 4 0.07
44 19 0.34
45 5 0.09
46 13 0.23
ACGTcount: A:0.37, C:0.31, G:0.03, T:0.29
Consensus pattern (41 bp):
CTATTACACCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:8261864 original size:44 final size:46
Alignment explanation
Indices: 8261801--8261891 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
8261791 ACCTCTATTC
* *
8261801 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCCATTA
8261845 CATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCCATTA
8261891 C
1 C
8261892 GCATCTATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 19 0.44
45 4 0.09
46 20 0.47
ACGTcount: A:0.40, C:0.31, G:0.03, T:0.26
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACACCTCTATTCCATTA
Found at i:8261898 original size:16 final size:16
Alignment explanation
Indices: 8261879--8261923 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
8261869 CTATTACACC
8261879 TCTATTCCATTACGCA
1 TCTATTCCATTACGCA
*
8261895 TCTATTCCATTACGCC
1 TCTATTCCATTACGCA
*
8261911 TCTATTCTATTAC
1 TCTATTCCATTAC
8261924 AGCGAACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.22, C:0.31, G:0.04, T:0.42
Consensus pattern (16 bp):
TCTATTCCATTACGCA
Done.