Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 27 of 141
Found at i:8285512 original size:20 final size:20
Alignment explanation
Indices: 8285487--8285524 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8285477 CATATGCATC
*
8285487 AACATTTTCATAAAATTATG
1 AACATTTCCATAAAATTATG
*
8285507 AACATTTCCATTAAATTA
1 AACATTTCCATAAAATTA
8285525 CCATTCTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
AACATTTCCATAAAATTATG
Found at i:8286837 original size:21 final size:21
Alignment explanation
Indices: 8286811--8286869 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
8286801 TTAGGGTGGA
*
8286811 TCAGCTCTTACGAGCTTCTAT
1 TCAGCTCTTATGAGCTTCTAT
*
8286832 TCAGCTCTTTTGAGCTTCTAT
1 TCAGCTCTTATGAGCTTCTAT
*
8286853 TTAGCTCTTATGAGCTT
1 TCAGCTCTTATGAGCTT
8286870 TCGTTGGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.44
Consensus pattern (21 bp):
TCAGCTCTTATGAGCTTCTAT
Found at i:8287622 original size:12 final size:13
Alignment explanation
Indices: 8287598--8287626 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8287588 GATTAATATC
8287598 ATTTTGAATTGGT
1 ATTTTGAATTGGT
8287611 ATTTTG-ATTGGT
1 ATTTTGAATTGGT
8287623 ATTT
1 ATTT
8287627 GAGTTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (13 bp):
ATTTTGAATTGGT
Found at i:8298727 original size:15 final size:15
Alignment explanation
Indices: 8298707--8298737 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8298697 GTCATGTAAG
8298707 TGAAAGGTCAAAAGT
1 TGAAAGGTCAAAAGT
8298722 TGAAAGGTCAAAAGT
1 TGAAAGGTCAAAAGT
8298737 T
1 T
8298738 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.26, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAAAGT
Found at i:8303041 original size:15 final size:15
Alignment explanation
Indices: 8303023--8303051 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8303013 GTTATGTAAG
8303023 TGAAAGGTCAAGAGC
1 TGAAAGGTCAAGAGC
8303038 TGAAAGGTCAAGAG
1 TGAAAGGTCAAGAG
8303052 TTATGTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.10, G:0.34, T:0.14
Consensus pattern (15 bp):
TGAAAGGTCAAGAGC
Found at i:8309065 original size:43 final size:43
Alignment explanation
Indices: 8309018--8309162 Score: 233
Period size: 43 Copynumber: 3.4 Consensus size: 43
8309008 GTACATATCT
* *
8309018 TTTACTTTCTTTATTAAAGAGATAATTTTTTAAAATTTATAAA
1 TTTACTTTATATATTAAAGAGATAATTTTTTAAAATTTATAAA
8309061 TTTACTTTATATATTAAAGAGATAATTTTTTAAAATTTATAAA
1 TTTACTTTATATATTAAAGAGATAATTTTTTAAAATTTATAAA
8309104 TTTACTTTATATATTAAAGAGATAATTTTTT--AATTTATAAA
1 TTTACTTTATATATTAAAGAGATAATTTTTTAAAATTTATAAA
8309145 -TTACTCTTTATATATTAA
1 TTTA--CTTTATATATTAA
8309163 TTATATACAT
Statistics
Matches: 98, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
40 3 0.03
41 10 0.10
42 13 0.13
43 72 0.73
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (43 bp):
TTTACTTTATATATTAAAGAGATAATTTTTTAAAATTTATAAA
Found at i:8310093 original size:18 final size:15
Alignment explanation
Indices: 8310062--8310110 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
8310052 AATACAATAG
8310062 AAAAAAGATAAGTAA
1 AAAAAAGATAAGTAA
8310077 TAAAAAAGATTATAGT-A
1 -AAAAAAGA-TA-AGTAA
*
8310094 AAAAAACATAAGTAA
1 AAAAAAGATAAGTAA
8310109 AA
1 AA
8310111 GTTTAAGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 3 0.10
15 5 0.17
16 15 0.52
17 3 0.10
18 3 0.10
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.18
Consensus pattern (15 bp):
AAAAAAGATAAGTAA
Found at i:8310095 original size:15 final size:15
Alignment explanation
Indices: 8310057--8310098 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8310047 TCGACAATAC
8310057 AATAG-AAAAAAGAT
1 AATAGTAAAAAAGAT
*
8310071 AAGTAATAAAAAAGAT
1 AA-TAGTAAAAAAGAT
*
8310087 TATAGTAAAAAA
1 AATAGTAAAAAA
8310099 ACATAAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (15 bp):
AATAGTAAAAAAGAT
Found at i:8311406 original size:32 final size:32
Alignment explanation
Indices: 8311365--8311427 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
8311355 GGACACCTTT
*
8311365 AATGTAAGATGATAAAAAGGCTTTAATACTTC
1 AATGTAAGATGATAAAAAGGCTCTAATACTTC
8311397 AATGTAAGATGATAAAAAGGCTCTAATACTT
1 AATGTAAGATGATAAAAAGGCTCTAATACTT
8311428 TTATAACTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (32 bp):
AATGTAAGATGATAAAAAGGCTCTAATACTTC
Found at i:8314703 original size:14 final size:14
Alignment explanation
Indices: 8314686--8314719 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8314676 TGGAGGACCG
8314686 GAGGTGGATCGGTA
1 GAGGTGGATCGGTA
* *
8314700 GAGGTGGATTGGTG
1 GAGGTGGATCGGTA
8314714 GAGGTG
1 GAGGTG
8314720 AAGGTTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.03, G:0.56, T:0.24
Consensus pattern (14 bp):
GAGGTGGATCGGTA
Found at i:8319961 original size:50 final size:50
Alignment explanation
Indices: 8319879--8320121 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
8319869 ATTTGGGTAA
*
8319879 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
8319929 AGAGGTACCATGTAAGACCATGTTTGGCACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
8319979 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * *
8320029 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
8320079 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
8320122 TGTTATTATC
Statistics
Matches: 174, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 140 0.80
51 34 0.20
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:8321892 original size:27 final size:27
Alignment explanation
Indices: 8321850--8321917 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
8321840 AACACACTAG
*
8321850 GAAAGGAATGCTTTTGTGGCAATACAT
1 GAAAGGAATGCCTTTGTGGCAATACAT
8321877 GAAAGGAATGCCTTTGTGGCAATACAT
1 GAAAGGAATGCCTTTGTGGCAATACAT
*
8321904 GAAAGGAGTGCCTT
1 GAAAGGAATGCCTT
8321918 CATGGCGGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (27 bp):
GAAAGGAATGCCTTTGTGGCAATACAT
Found at i:8332638 original size:27 final size:27
Alignment explanation
Indices: 8332607--8332784 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
8332597 TAAATTGTAC
8332607 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
8332634 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8332660 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
8332688 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
8332716 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8332743 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
8332770 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8332785 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:8332721 original size:82 final size:81
Alignment explanation
Indices: 8332608--8332763 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8332598 AAATTGTACA
* *
8332608 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
8332672 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
8332689 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
8332754 TGCGAGTTGA
65 TGCGAATTGA
8332764 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:8332775 original size:82 final size:81
Alignment explanation
Indices: 8332604--8332784 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
8332594 GATTAAATTG
* *
8332604 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
8332669 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
8332685 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
8332749 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
8332767 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
8332785 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:8347794 original size:43 final size:42
Alignment explanation
Indices: 8347747--8347841 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
8347737 AGATGTGGTT
* *
8347747 TTACATGTAATCAAATA-ACGATGCCACTATCCCAGACAGGGTC
1 TTACACGTAATCAAATACA-G-TGCCAATATCCCAGACAGGGTC
* * * *
8347790 TTACACGTAATCATATACAGTGCCAATGTCCCAGACATGTTC
1 TTACACGTAATCAAATACAGTGCCAATATCCCAGACAGGGTC
8347832 TTACACGTAA
1 TTACACGTAA
8347842 ATCTCAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 28 0.62
43 16 0.36
44 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (42 bp):
TTACACGTAATCAAATACAGTGCCAATATCCCAGACAGGGTC
Found at i:8349822 original size:27 final size:27
Alignment explanation
Indices: 8349803--8349948 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
8349793 GGGTATAACA
*
8349803 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
8349830 CTCATTTTACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
8349857 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
8349884 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
** * *
8349911 GTCATTTTATTCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
8349938 GTCATTTTACC
1 GTCATTTTACC
8349949 TATTTTGGGG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:8359422 original size:103 final size:103
Alignment explanation
Indices: 8359243--8359446 Score: 329
Period size: 103 Copynumber: 2.0 Consensus size: 103
8359233 TCGTCTCATA
* * * *
8359243 TTTATCCTTGATGCTCAAAAACCCTAGTGTCCCCTCCACAAGGCCTACAGCTTCGGACACTATGG
1 TTTATCCTTGATGCTCAAAAACCCTAGTGTCCCCTCCACAAGGCCCACAGCTTCGCACACCATGA
**
8359308 TTTGCTCTCAGCAACATTGGATGGTAGAATCTTAACGG
66 TTTGCTCTCAGCAACATCAGATGGTAGAATCTTAACGG
8359346 TTTATCCTTGATGCTCAAAAACCCTAGTGTCCCCTCCACAAGGCCCACAGCTTCGCACACCACT-
1 TTTATCCTTGATGCTCAAAAACCCTAGTGTCCCCTCCACAAGGCCCACAGCTTCGCACACCA-TG
*
8359410 ATTTGTTCTCAGCAACATCAGATGGTAGAATCTTAAC
65 ATTTGCTCTCAGCAACATCAGATGGTAGAATCTTAAC
8359447 AGAAATTCCA
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
103 92 0.99
104 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (103 bp):
TTTATCCTTGATGCTCAAAAACCCTAGTGTCCCCTCCACAAGGCCCACAGCTTCGCACACCATGA
TTTGCTCTCAGCAACATCAGATGGTAGAATCTTAACGG
Found at i:8360968 original size:32 final size:32
Alignment explanation
Indices: 8360927--8360992 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
8360917 AGAAGAAGAT
*
8360927 AAATCTTGGGTTGTTTGAATTATCCTGAAAAA
1 AAATCTTGGGCTGTTTGAATTATCCTGAAAAA
8360959 AAATCTTGGGCTGTTTGAATTATCCTGAAAAA
1 AAATCTTGGGCTGTTTGAATTATCCTGAAAAA
8360991 AA
1 AA
8360993 GAATAAAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (32 bp):
AAATCTTGGGCTGTTTGAATTATCCTGAAAAA
Found at i:8362375 original size:27 final size:27
Alignment explanation
Indices: 8362345--8362396 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
8362335 AATGACCCTG
*
8362345 GTCTCAACGATAATCTAAATGGTCATA
1 GTCTCAACGATAATCCAAATGGTCATA
* *
8362372 GTCTTAATGATAATCCAAATGGTCA
1 GTCTCAACGATAATCCAAATGGTCA
8362397 GAATGTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
GTCTCAACGATAATCCAAATGGTCATA
Found at i:8362405 original size:27 final size:27
Alignment explanation
Indices: 8362353--8362406 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
8362343 TGGTCTCAAC
* * *
8362353 GATAATCTAAATGGTCATAGTCTTAAT
1 GATAATCCAAATGGTCAGAATCTTAAT
*
8362380 GATAATCCAAATGGTCAGAATGTTAAT
1 GATAATCCAAATGGTCAGAATCTTAAT
8362407 TCTCCTATTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (27 bp):
GATAATCCAAATGGTCAGAATCTTAAT
Found at i:8368034 original size:27 final size:26
Alignment explanation
Indices: 8367996--8368269 Score: 280
Period size: 27 Copynumber: 10.2 Consensus size: 26
8367986 AGGTCGATAT
* *
8367996 ATGACCGAAATACCCCTATTGGGTAAA
1 ATGACCGAAATACCCCGA-AGGGTAAA
* *
8368023 ATGACCGAAATACCCCTATTGGGTAAA
1 ATGACCGAAATACCCCGA-AGGGTAAA
8368050 ATGACCGAAATACCCCCGAAGGGTAAA
1 ATGACCGAAATA-CCCCGAAGGGTAAA
**
8368077 ATGACCGAAATACCTTTGAAGGGTAAA
1 ATGACCGAAATACC-CCGAAGGGTAAA
**
8368104 ATGACTAAAATACCCTCGAAGGGTAAA
1 ATGACCGAAATACCC-CGAAGGGTAAA
* * *
8368131 ATAACCAAAATACCCTCGAGGGGTAAA
1 ATGACCGAAATACCC-CGAAGGGTAAA
* *
8368158 ATGATC-AAATTACCCTCGAAAGGTAAA
1 ATGACCGAAA-TACCC-CGAAGGGTAAA
**
8368185 ATGACTAAAATACCCTCGAAGGGTAAA
1 ATGACCGAAATACCC-CGAAGGGTAAA
**
8368212 ATGACTAAAATACCCTCGAAGGGTAAA
1 ATGACCGAAATACCC-CGAAGGGTAAA
*
8368239 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCGA-AGGGTAAA
8368266 ATGA
1 ATGA
8368270 TTGATATACC
Statistics
Matches: 220, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.03
27 205 0.93
28 8 0.04
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (26 bp):
ATGACCGAAATACCCCGAAGGGTAAA
Found at i:8368131 original size:81 final size:81
Alignment explanation
Indices: 8367996--8368269 Score: 340
Period size: 81 Copynumber: 3.4 Consensus size: 81
8367986 AGGTCGATAT
* * ** * * *
8367996 ATGACCGAAATACCC-CTATTGGGTAAAATGACCGAAATACCC-CTATTGGGTAAAATGACCGAA
1 ATGACCGAAATACCCTCGA-AGGGTAAAATGACTAAAATACCCTCGA-AGGGTAAAATGACCAAA
*
8368059 ATACCCCCGAAGGGTAAA
64 ATACCCTCGAAGGGTAAA
* * *
8368077 ATGACCGAAATACCTTTGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATAACCAAAAT
1 ATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAAAT
*
8368142 ACCCTCGAGGGGTAAA
66 ACCCTCGAAGGGTAAA
* * *
8368158 ATGATC-AAATTACCCTCGAAAGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTAAAA
1 ATGACCGAAA-TACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAAA
8368222 TACCCTCGAAGGGTAAA
65 TACCCTCGAAGGGTAAA
*
8368239 ATGACCGAAATACCC-CCATAGGGTAAAATGA
1 ATGACCGAAATACCCTCGA-AGGGTAAAATGA
8368270 TTGATATACC
Statistics
Matches: 166, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 5 0.03
81 155 0.93
82 6 0.04
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (81 bp):
ATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACCAAAAT
ACCCTCGAAGGGTAAA
Found at i:8368280 original size:54 final size:53
Alignment explanation
Indices: 8368016--8368269 Score: 312
Period size: 54 Copynumber: 4.7 Consensus size: 53
8368006 TACCCCTATT
* * ** *
8368016 GGGTAAAATGACCGAAATACCCCTATTGGGTAAAATGACCGAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCCGA-AGGGTAAAATGACTAAAATACCCTCGAA
**
8368070 GGGTAAAATGACCGAAATACCTTTGAAGGGTAAAATGACTAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACC-CCGAAGGGTAAAATGACTAAAATACCCTCGAA
* * * *
8368124 GGGTAAAATAACCAAAATACCCTCGAGGGGTAAAATGA-TCAAATTACCCTCGAA
1 GGGTAAAATGACCGAAATACCC-CGAAGGGTAAAATGACT-AAAATACCCTCGAA
* **
8368178 AGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAA
1 GGGTAAAATGACCGAAATACCC-CGAAGGGTAAAATGACTAAAATACCCTCGAA
*
8368232 GGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCCGA-AGGGTAAAATGA
8368270 TTGATATACC
Statistics
Matches: 173, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
53 3 0.02
54 168 0.97
55 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.18
Consensus pattern (53 bp):
GGGTAAAATGACCGAAATACCCCGAAGGGTAAAATGACTAAAATACCCTCGAA
Found at i:8368647 original size:28 final size:29
Alignment explanation
Indices: 8368607--8368693 Score: 90
Period size: 28 Copynumber: 3.0 Consensus size: 29
8368597 CATTGTACTG
*
8368607 ATTACTATATTGGGCTAAGGCCGA-A-ACT
1 ATTACTGTATTGGGCTAAGGCC-ACACACT
* *
8368635 ATTACTGTATTGGGCTACGACTCACACACT
1 ATTACTGTATTGGGCTAAGGC-CACACACT
* *
8368665 GTTACTGTAATGGGCTAAGGCC-CACACT
1 ATTACTGTATTGGGCTAAGGCCACACACT
8368693 A
1 A
8368694 CACTGATACT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
28 25 0.52
29 3 0.06
30 20 0.42
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (29 bp):
ATTACTGTATTGGGCTAAGGCCACACACT
Found at i:8368691 original size:30 final size:30
Alignment explanation
Indices: 8368603--8368691 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
8368593 ACTGCATTGT
* *
8368603 ACTGATTACTATATTGGGCTAAGGCCGA-A-
1 ACTG-TTACTGTATTGGGCTAAGGCCCACAC
* * * *
8368632 ACTATTACTGTATTGGGCTACGACTCACAC
1 ACTGTTACTGTATTGGGCTAAGGCCCACAC
*
8368662 ACTGTTACTGTAATGGGCTAAGGCCCACAC
1 ACTGTTACTGTATTGGGCTAAGGCCCACAC
8368692 TACACTGATA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
28 18 0.38
29 4 0.09
30 25 0.53
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (30 bp):
ACTGTTACTGTATTGGGCTAAGGCCCACAC
Found at i:8370028 original size:43 final size:43
Alignment explanation
Indices: 8369925--8370149 Score: 335
Period size: 43 Copynumber: 5.3 Consensus size: 43
8369915 TTATAGAAAT
* * *
8369925 AAATGCCACTAAAGGTCATGTTCTTTAGCGGCGC-TTTCACAA
1 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
8369967 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
1 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
* *
8370010 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGGTTTTCCTAC
1 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
* *
8370053 AAATGCCGCTAAAGGTCATGTTCTTTAACGGCGCTATTCCCAC
1 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
* * * *
8370096 AAACGCCGCTAAAGGTCATGTTCTCTCGCGGCGCTTTTTCCAC
1 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
*
8370139 AAACGCCGCTA
1 AAATGCCGCTA
8370150 TTGTTTGGTG
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 33 0.20
43 134 0.80
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (43 bp):
AAATGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTCCCAC
Found at i:8370882 original size:8 final size:8
Alignment explanation
Indices: 8370866--8370896 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8370856 ATTCGGGCCT
*
8370866 ACAATGCA
1 ACAAGGCA
8370874 ACAAGGCA
1 ACAAGGCA
8370882 ACAAGGCA
1 ACAAGGCA
8370890 ACAAGGC
1 ACAAGGC
8370897 CTTCATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
ACAAGGCA
Found at i:8374135 original size:17 final size:16
Alignment explanation
Indices: 8374097--8374152 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 16
8374087 ACCGTTGAAA
8374097 CCCTAAAT-CCCTAAC
1 CCCTAAATCCCCTAAC
**
8374112 CTTTAAATCCCCATAAC
1 CCCTAAATCCCC-TAAC
8374129 CCCTAAATCCCCCTAAC
1 CCCTAAAT-CCCCTAAC
8374146 CCCTAAA
1 CCCTAAA
8374153 GCATAGCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
15 6 0.18
16 3 0.09
17 21 0.62
18 4 0.12
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (16 bp):
CCCTAAATCCCCTAAC
Found at i:8374187 original size:21 final size:21
Alignment explanation
Indices: 8374138--8374194 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
8374128 CCCCTAAATC
*
8374138 CCCCTAACCCCTAAAGCATAG
1 CCCCTAACCCCTAAAGCATAA
**
8374159 CCTTTAACCCCTAAAGCATAA
1 CCCCTAACCCCTAAAGCATAA
*
8374180 CCCCTAACCCTTAAA
1 CCCCTAACCCCTAAA
8374195 CCTTAAATCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.40, G:0.05, T:0.19
Consensus pattern (21 bp):
CCCCTAACCCCTAAAGCATAA
Found at i:8374769 original size:41 final size:40
Alignment explanation
Indices: 8374704--8374944 Score: 331
Period size: 41 Copynumber: 5.9 Consensus size: 40
8374694 TTTTTTTATT
8374704 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGGCCCGAGC
* *
8374745 ATTAGCGGCGCTATTTCAACAACGCCACTAAAGGCCCGAGC
1 ATTAGCGGCGCT-TTTCAAAAACGCCGCTAAAGGCCCGAGC
* **
8374786 ATTAGCGGCGCTTTTTC-AAAACGCCACTAAAGGAACGAGC
1 ATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGGCCCGAGC
*
8374826 ATTAGCGGCGCATTTTCAAAAACACCGCTAAAGGCCCGAGC
1 ATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
8374867 ATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGGCCCGATC
1 ATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGGCCCGAGC
* *
8374908 ATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAAGCCC
1 ATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGGCCC
8374945 CTAAAACTCA
Statistics
Matches: 180, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.21
41 139 0.77
42 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:8374843 original size:81 final size:81
Alignment explanation
Indices: 8374704--8374931 Score: 332
Period size: 81 Copynumber: 2.8 Consensus size: 81
8374694 TTTTTTTATT
* *
8374704 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTATTTCAACAACG
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCT-TTTCAAAAACG
8374769 CCACTAAAGGCCCGAGC
65 CCACTAAAGGCCCGAGC
* ** *
8374786 ATTAGCGGCGCTTTTTC-AAAACGCCACTAAAGGAACGAGCATTAGCGGCGCATTTTCAAAAACA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGC-TTTTCAAAAACG
*
8374850 CCGCTAAAGGCCCGAGC
65 CCACTAAAGGCCCGAGC
* * *
8374867 ATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGGCCCGATCATTAGCGGCGCTTCTTCAAAAACG
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTT-TTCAAAAACG
8374932 TCGCTAAAAG
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
81 74 0.57
82 55 0.43
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (81 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTTTCAAAAACGC
CACTAAAGGCCCGAGC
Found at i:8374926 original size:122 final size:122
Alignment explanation
Indices: 8374704--8374928 Score: 364
Period size: 122 Copynumber: 1.8 Consensus size: 122
8374694 TTTTTTTATT
* *
8374704 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCCCGAGCATTAGCGGCGCTATTTCAACAACG
1 ATTAGCGGCGCTTTCTCAAAAACACCGCTAAAGGCCCGAGCATTAGCGGCGCTATTTCAAAAACG
*
8374769 CCACTAAAGGCCCGAGCATTAGCGGCGCTTTTTCAAAACGCCACTAAAGGAACGAGC
66 CCACTAAAGGCCCGAGCATTAGCGGCGCTTCTTCAAAACGCCACTAAAGGAACGAGC
8374826 ATTAGCGGCGCATTT-TCAAAAACACCGCTAAAGGCCCGAGCATTAGCGGCGCT-TCTTCAAAAA
1 ATTAGCGGCGC-TTTCTCAAAAACACCGCTAAAGGCCCGAGCATTAGCGGCGCTAT-TTCAAAAA
* * *
8374889 TGCCGCTAAAGGCCCGATCATTAGCGGCGCTTCTTCAAAA
64 CGCCACTAAAGGCCCGAGCATTAGCGGCGCTTCTTCAAAA
8374929 ACGTCGCTAA
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 91 0.96
123 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (122 bp):
ATTAGCGGCGCTTTCTCAAAAACACCGCTAAAGGCCCGAGCATTAGCGGCGCTATTTCAAAAACG
CCACTAAAGGCCCGAGCATTAGCGGCGCTTCTTCAAAACGCCACTAAAGGAACGAGC
Found at i:8375022 original size:39 final size:39
Alignment explanation
Indices: 8374979--8375054 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
8374969 CGGTCTTAGG
* *
8374979 TTTTTTGCGGCGCTTTTCAAAAAACGTC-GCTAATGCTTA
1 TTTTTAGCGGCACTTTTCAAAAAACG-CAGCTAATGCTTA
* *
8375018 TTTTTAGCGGCATTTTTCAAAAACCGCAGCTAATGCT
1 TTTTTAGCGGCACTTTTCAAAAAACGCAGCTAATGCT
8375055 CCATCTTTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 31 0.97
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (39 bp):
TTTTTAGCGGCACTTTTCAAAAAACGCAGCTAATGCTTA
Found at i:8375104 original size:40 final size:39
Alignment explanation
Indices: 8374993--8375104 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 39
8374983 TTGCGGCGCT
* * *
8374993 TTTCAAAAAACGTCGCTAATGCTTATTTTTAGCGGCATT
1 TTTCAAAAACCGCCGCTAATGCTTATTTTTAGCGGCATC
* * * **
8375032 TTTCAAAAACCGCAGCTAATGCTCCATCTTTAGCGGTGTC
1 TTTCAAAAACCGCCGCTAATGCT-TATTTTTAGCGGCATC
**
8375072 TTT-AGAAAAGTGCCGCTAATGCTTGATTTTTAG
1 TTTCA-AAAACCGCCGCTAATGCTT-ATTTTTAG
8375105 TGGCGTTTTT
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
39 21 0.37
40 36 0.63
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (39 bp):
TTTCAAAAACCGCCGCTAATGCTTATTTTTAGCGGCATC
Found at i:8376310 original size:69 final size:69
Alignment explanation
Indices: 8376230--8376449 Score: 241
Period size: 69 Copynumber: 3.2 Consensus size: 69
8376220 ATAGTTGACT
* * ** *
8376230 TATGGTTTTACACCTTGTAATCCTTGTGTTTACTATCCCAGTGGACTCTATTGATCGCCATAGCC
1 TATGGTCTTACACCTTGTAATCCTTGTGTTTACTGTCCCAGCAGACTCTATTGATCACCATAGCC
8376295 AAAC
66 AAAC
* * * * * *
8376299 TATAGTCTTACACATTGTAATTCC-TGTGTTTACTGTCCCAACAAACTCTATTGGTCACCATAGT
1 TATGGTCTTACACCTTGTAA-TCCTTGTGTTTACTGTCCCAGCAGACTCTATTGATCACCATAGC
8376363 CAAAC
65 CAAAC
* *
8376368 TATGGTCTTACACCTCT-TAATTCTTGTGCTTT-CTGT-CCTGACAGACTCTATTGATCACCATA
1 TATGGTCTTACACCT-TGTAATCCTTGTG-TTTACTGTCCCAG-CAGACTCTATTGATCACCATA
*
8376430 GCCAAGC
63 GCCAAAC
*
8376437 TATGGTCTCACAC
1 TATGGTCTTACAC
8376450 TCTAAACCTC
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
68 4 0.03
69 114 0.91
70 7 0.06
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (69 bp):
TATGGTCTTACACCTTGTAATCCTTGTGTTTACTGTCCCAGCAGACTCTATTGATCACCATAGCC
AAAC
Found at i:8376351 original size:138 final size:138
Alignment explanation
Indices: 8376147--8376449 Score: 314
Period size: 138 Copynumber: 2.2 Consensus size: 138
8376137 CTTTACCTGA
* * * *
8376147 CGCCATAGCCAAACTATGGTCTTACTCAGTATGAACCCATGTTTATTGTCCTAGCAAACTCTTAT
1 CGCCATAGCCAAACTATGGTCTTACACAGTATGAACCCATGTTTACTGTCCCAACAAACTCTTAT
** ** * **
8376212 TGGTTGCCATAGT-TGACTTATGGTTTTACACCT-TGTAATCCTTGTG-TTTACTATCCCAG-TG
66 TGGTCACCATAGTCAAAC-TATGGTCTTACACCTCT-TAATCCTTGTGCTTT-CTAT-CCAGACA
8376273 GACTCTATTGAT
127 GACTCTATTGAT
* **
8376285 CGCCATAGCCAAACTATAGTCTTACACA-T-TGTAATTCCTGTGTTTACTGTCCCAACAAACTC-
1 CGCCATAGCCAAACTATGGTCTTACACAGTATG-AA--CCCATGTTTACTGTCCCAACAAACTCT
* * *
8376347 TATTGGTCACCATAGTCAAACTATGGTCTTACACCTCTTAATTCTTGTGCTTTCTGTCCTGACAG
63 TATTGGTCACCATAGTCAAACTATGGTCTTACACCTCTTAATCCTTGTGCTTTCTATCCAGACAG
8376412 ACTCTATTGAT
128 ACTCTATTGAT
* * *
8376423 CACCATAGCCAAGCTATGGTCTCACAC
1 CGCCATAGCCAAACTATGGTCTTACAC
8376450 TCTAAACCTC
Statistics
Matches: 137, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
136 2 0.01
137 6 0.04
138 102 0.74
139 27 0.20
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (138 bp):
CGCCATAGCCAAACTATGGTCTTACACAGTATGAACCCATGTTTACTGTCCCAACAAACTCTTAT
TGGTCACCATAGTCAAACTATGGTCTTACACCTCTTAATCCTTGTGCTTTCTATCCAGACAGACT
CTATTGAT
Found at i:8381256 original size:29 final size:29
Alignment explanation
Indices: 8381213--8381462 Score: 249
Period size: 29 Copynumber: 8.6 Consensus size: 29
8381203 ATGGCGATCT
* *
8381213 TCGAATATGATAAGGGATAGCTTCGGCTA
1 TCGAATATGAAAAGGGATAGCTTCGACTA
*
8381242 TCGATTATGAAAAGGGATAGCTTCGACTA
1 TCGAATATGAAAAGGGATAGCTTCGACTA
* * *
8381271 TCGAATATGAAAAGGGATAGATTTGGCTA
1 TCGAATATGAAAAGGGATAGCTTCGACTA
* * * * * *
8381300 TTGATTATGAAAAGGGAT-GGTGACAACCA
1 TCGAATATGAAAAGGGATAGCT-TCGACTA
* *
8381329 TC-AACTATGAAAAGGGAT-GGTGAT-GACCA
1 TCGAA-TATGAAAAGGGATAGCT--TCGACTA
*
8381358 TCGAATATGAAAATGGATAGCTTCGACTA
1 TCGAATATGAAAAGGGATAGCTTCGACTA
* *
8381387 TCAAATATGAAAAGGGATAGCTTCGGCTA
1 TCGAATATGAAAAGGGATAGCTTCGACTA
*
8381416 TCGAATATGAAAAGGAATAGCTTC-AGCTA
1 TCGAATATGAAAAGGGATAGCTTCGA-CTA
*
8381445 TCGATTATGAAAAGGGAT
1 TCGAATATGAAAAGGGAT
8381463 GGTGACGACC
Statistics
Matches: 183, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
28 4 0.02
29 175 0.96
30 4 0.02
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (29 bp):
TCGAATATGAAAAGGGATAGCTTCGACTA
Found at i:8381425 original size:116 final size:116
Alignment explanation
Indices: 8381241--8381491 Score: 335
Period size: 116 Copynumber: 2.2 Consensus size: 116
8381231 AGCTTCGGCT
* * * * *
8381241 ATCGATTATGAAAAGGGATAGCTTCGACTATCGAATATGAAAAGGGATAGATTTGGCTATTGATT
1 ATCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGATTCGGCTATCGAAT
* * *
8381306 ATGAAAAGGGAT-GGTGACAACCATCAACTATGAAAAGGGATGGTGATGACC
66 ATGAAAAGGAATAGCT-ACAACCATCAACTATGAAAAGGGATGGTGACGACC
* *
8381357 ATCGAATATGAAAATGGATAGCTTCGACTATCAAATATGAAAAGGGATAGCTTCGGCTATCGAAT
1 ATCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGATTCGGCTATCGAAT
* * * * *
8381422 ATGAAAAGGAATAGCTTCAGCTATCGATTATGAAAAGGGATGGTGACGACC
66 ATGAAAAGGAATAGCTACAACCATCAACTATGAAAAGGGATGGTGACGACC
8381473 ATC-AACTATGAAAAGGGAT
1 ATCGAA-TATGAAAAGGGAT
8381492 GGTGACAACC
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
115 2 0.02
116 113 0.97
117 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.24
Consensus pattern (116 bp):
ATCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGATTCGGCTATCGAAT
ATGAAAAGGAATAGCTACAACCATCAACTATGAAAAGGGATGGTGACGACC
Found at i:8381476 original size:145 final size:145
Alignment explanation
Indices: 8381213--8381548 Score: 492
Period size: 145 Copynumber: 2.3 Consensus size: 145
8381203 ATGGCGATCT
* * * *
8381213 TCGAATATGATAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATAGCTTCGACTATCGAATA
1 TCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGCTTCGACTATCGAATA
* ** *
8381278 TGAAAAGGGATAGATTTGGCTATTGATTATGAAAAGGGATGGTGACAACCATCAACTATGAAAAG
66 TGAAAAGGAATAGATTCAGCTATCGATTATGAAAAGGGATGGTGACAACCATCAACTATGAAAAG
**
8381343 GGATGGTGATGACCA
131 GGATGGTGACAACCA
* *
8381358 TCGAATATGAAAATGGATAGCTTCGACTATCAAATATGAAAAGGGATAGCTTCGGCTATCGAATA
1 TCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGCTTCGACTATCGAATA
* *
8381423 TGAAAAGGAATAGCTTCAGCTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAG
66 TGAAAAGGAATAGATTCAGCTATCGATTATGAAAAGGGATGGTGACAACCATCAACTATGAAAAG
8381488 GGATGGTGACAACCA
131 GGATGGTGACAACCA
* * * * *
8381503 TCGATTAATGAAAAGGGATGGTTTCAACCATCAAATATGAAAAGGG
1 TCGAAT-ATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGG
8381549 CCGGTTACAA
Statistics
Matches: 170, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
145 136 0.80
146 34 0.20
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (145 bp):
TCGAATATGAAAAGGGATAGCTTCGACTATCAAATATGAAAAGGGATAGCTTCGACTATCGAATA
TGAAAAGGAATAGATTCAGCTATCGATTATGAAAAGGGATGGTGACAACCATCAACTATGAAAAG
GGATGGTGACAACCA
Found at i:8381533 original size:59 final size:58
Alignment explanation
Indices: 8381444--8381564 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 58
8381434 AGCTTCAGCT
* * *
8381444 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACC
1 ATCGATTATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGACGGTGACAACC
** * *
8381502 ATCGATTAATGAAAAGGGATGGTTTCAACCATCAAATATGAAAAGGGCCGGTTACAACC
1 ATCGATT-ATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGACGGTGACAACC
8381561 ATCG
1 ATCG
8381565 TTTAGCACAC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 7 0.13
59 48 0.87
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (58 bp):
ATCGATTATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGGGACGGTGACAACC
Found at i:8381554 original size:29 final size:29
Alignment explanation
Indices: 8381305--8381563 Score: 191
Period size: 29 Copynumber: 8.9 Consensus size: 29
8381295 GGCTATTGAT
* *
8381305 TATGAAAAGGGATGGTGACAACCATCAAC
1 TATGAAAAGGGATGGTTACAACCATCAAA
* ** *
8381334 TATGAAAAGGGATGGTGATGACCATCGAA
1 TATGAAAAGGGATGGTTACAACCATCAAA
* * * *
8381363 TATGAAAATGGATAGCTT-CGACTATCAAA
1 TATGAAAAGGGAT-GGTTACAACCATCAAA
* ** * *
8381392 TATGAAAAGGGATAGCTT-CGGCTATCGAA
1 TATGAAAAGGGAT-GGTTACAACCATCAAA
* * * * * *
8381421 TATGAAAAGGAATAGCTT-CAGCTATCGAT
1 TATGAAAAGGGAT-GGTTACAACCATCAAA
* * *
8381450 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTTACAACCATCAAA
* * *
8381479 TATGAAAAGGGATGGTGACAACCATCGAT
1 TATGAAAAGGGATGGTTACAACCATCAAA
*
8381508 TAATGAAAAGGGATGGTTTCAACCATCAAA
1 T-ATGAAAAGGGATGGTTACAACCATCAAA
**
8381538 TATGAAAAGGGCCGGTTACAACCATC
1 TATGAAAAGGGATGGTTACAACCATC
8381564 GTTTAGCACA
Statistics
Matches: 193, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
28 2 0.01
29 164 0.85
30 27 0.14
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTACAACCATCAAA
Found at i:8395001 original size:24 final size:25
Alignment explanation
Indices: 8394974--8395029 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 25
8394964 CATCAAACTA
*
8394974 AAGTTAGA-AATGTCATTACAACCT
1 AAGTTACAGAATGTCATTACAACCT
8394998 AAG-TACAGAATGTCATTACAACCT
1 AAGTTACAGAATGTCATTACAACCT
8395022 AAG-TACAG
1 AAGTTACAG
8395030 GGACTGAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (25 bp):
AAGTTACAGAATGTCATTACAACCT
Found at i:8400162 original size:13 final size:13
Alignment explanation
Indices: 8400139--8400174 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8400129 AATGCATGTG
8400139 TAATG-TAATGGT
1 TAATGTTAATGGT
8400151 TAATGTTAATGGT
1 TAATGTTAATGGT
8400164 TAATGTGTAAT
1 TAATGT-TAAT
8400175 CGTGAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 5 0.23
13 13 0.59
14 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
TAATGTTAATGGT
Found at i:8403437 original size:14 final size:14
Alignment explanation
Indices: 8403398--8403437 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
8403388 AGAAATTTAT
8403398 TTAATTTAA-AAAA
1 TTAATTTAATAAAA
8403411 TTAA-TTAATTAAAA
1 TTAATTTAA-TAAAA
8403425 TTAATTTAATAAA
1 TTAATTTAATAAA
8403438 TAATATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.17
13 4 0.17
14 12 0.50
15 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TTAATTTAATAAAA
Found at i:8408402 original size:22 final size:22
Alignment explanation
Indices: 8408375--8408418 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8408365 GAAAAACAAG
*
8408375 TCCCTACAAATCAATTCTATGA
1 TCCCTACAAATCAACTCTATGA
*
8408397 TCCCTACAAATCAGCTCTATGA
1 TCCCTACAAATCAACTCTATGA
8408419 ATCAGCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.30
Consensus pattern (22 bp):
TCCCTACAAATCAACTCTATGA
Found at i:8410783 original size:17 final size:17
Alignment explanation
Indices: 8410761--8410814 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
8410751 TTGATACCAT
8410761 GAAAGCAAGCTGTTTCA
1 GAAAGCAAGCTGTTTCA
**
8410778 GAAAGCAA-C-AATT--
1 GAAAGCAAGCTGTTTCA
8410791 -AAAGCAAGCTGTTTCA
1 GAAAGCAAGCTGTTTCA
8410807 GAAAGCAA
1 GAAAGCAA
8410815 TAATTAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
12 7 0.25
13 1 0.04
14 2 0.07
15 2 0.07
16 1 0.04
17 15 0.54
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (17 bp):
GAAAGCAAGCTGTTTCA
Found at i:8410795 original size:29 final size:29
Alignment explanation
Indices: 8410762--8410821 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
8410752 TGATACCATG
8410762 AAAGCAAGCTGTTTCAGAAAGCAACAATT
1 AAAGCAAGCTGTTTCAGAAAGCAACAATT
*
8410791 AAAGCAAGCTGTTTCAGAAAGCAATAATT
1 AAAGCAAGCTGTTTCAGAAAGCAACAATT
8410820 AA
1 AA
8410822 TCAGAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.22
Consensus pattern (29 bp):
AAAGCAAGCTGTTTCAGAAAGCAACAATT
Found at i:8411994 original size:158 final size:158
Alignment explanation
Indices: 8411706--8412494 Score: 1330
Period size: 158 Copynumber: 5.0 Consensus size: 158
8411696 TATTATTGAG
* *
8411706 TTAAAGAATATATATTGAGAGCATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGACTTTT
1 TTAAAGAATATATATTGAGAACATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
*
8411771 CAATTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAATT
66 CAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAATT
8411836 TCTATTGAGAATTCTCACTTTGTGAGAA
131 TCTATTGAGAATTCTCACTTTGTGAGAA
* *
8411864 TTAAAGAATATATATTGAGAACATTTACTTAAACACTTGGTGTGCATTGCTTCTTTGTGGCTTTT
1 TTAAAGAATATATATTGAGAACATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
* * * *
8411929 CAGTTCTCTCGTTTCTTTTTCATTTCGAGTTGCTTCTGCTTTATTTTCTGTGCTTGAAGAGAATT
66 CAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAATT
8411994 TCTATTGAGAATTCTCACTTTGTGAGAA
131 TCTATTGAGAATTCTCACTTTGTGAGAA
* *
8412022 TTAAAGAATATATATCGA-AAGCATTTACTCAAACACTTGGTGTGCTTTGCTTCCTTGTGGCTTT
1 TTAAAGAATATATATTGAGAA-CATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTT
* *
8412086 TCAGTTCTCTCGTTACTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGACT
65 TCAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAAT
8412151 TTCTATTGAGAATTCTCACTTTGTGAGAA
130 TTCTATTGAGAATTCTCACTTTGTGAGAA
* * * *
8412180 TTAAAGAATATATATTGAGAATATTTACTTAAACACTTGGTGTGGATTGCTTCCTTATGGCTTTT
1 TTAAAGAATATATATTGAGAACATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
* *
8412245 CAGTTCTCTCGTTGCTTTTTCATTTCGAGTTGCTTCCGCTTTATTTTCTGTGCTTGAAGAGAATT
66 CAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAATT
*
8412310 TCTATTGAGAATTCTCACTTTGCGAGAA
131 TCTATTGAGAATTCTCACTTTGTGAGAA
*
8412338 TTAAAGAATATATATTGAGAGCATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
1 TTAAAGAATATATATTGAGAACATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
* *
8412403 TAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGC-TCCTGCTTTATTTTCAGTGCGTGAAGAGAAT
66 CAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCC-GCTTTATTTTCAGTGCTTGAAGAGAAT
*
8412467 TTCTATTGAGAATTCTCACTTTGCGAGA
130 TTCTATTGAGAATTCTCACTTTGTGAGA
8412495 GCTAGATCGA
Statistics
Matches: 590, Mismatches: 38, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
157 5 0.01
158 583 0.99
159 2 0.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (158 bp):
TTAAAGAATATATATTGAGAACATTTACTCAAACACTTGGTGTGCATTGCTTCCTTGTGGCTTTT
CAGTTCTCTCGTTGCTCTTTCATTTCGAGTTGCTTCCGCTTTATTTTCAGTGCTTGAAGAGAATT
TCTATTGAGAATTCTCACTTTGTGAGAA
Found at i:8414399 original size:18 final size:18
Alignment explanation
Indices: 8414362--8414415 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
8414352 ATAAATAGTA
*
8414362 AAATCGAGATAATGACATTG
1 AAAT-GAGA-AATGATATTG
8414382 AAATGAGAAATGATATTG
1 AAATGAGAAATGATATTG
*
8414400 AAATGAAAAATGATAT
1 AAATGAGAAATGATAT
8414416 GGAATGGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 24 0.75
19 4 0.12
20 4 0.12
ACGTcount: A:0.52, C:0.04, G:0.19, T:0.26
Consensus pattern (18 bp):
AAATGAGAAATGATATTG
Found at i:8421086 original size:21 final size:20
Alignment explanation
Indices: 8421055--8421108 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
8421045 ATTGGAGCAG
* * *
8421055 AAATATTGATATCTTAGGAA
1 AAATATCGATACCTTAAGAA
8421075 AATATATCGATACCTTAAGAA
1 AA-ATATCGATACCTTAAGAA
*
8421096 AAGTATCGATACC
1 AAATATCGATACC
8421109 GGATCGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (20 bp):
AAATATCGATACCTTAAGAA
Found at i:8427708 original size:26 final size:27
Alignment explanation
Indices: 8427676--8427732 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
8427666 CCACAAAATT
*
8427676 TATTCTTTCAGAG-TCTGCCAC-AAGGC
1 TATTCTTTCAAAGTTC-GCCACAAAGGC
8427702 TATTCTTTCAAAGTTCGCCACAAAGGC
1 TATTCTTTCAAAGTTCGCCACAAAGGC
8427729 TATT
1 TATT
8427733 TCTTAGCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (27 bp):
TATTCTTTCAAAGTTCGCCACAAAGGC
Found at i:8431555 original size:35 final size:36
Alignment explanation
Indices: 8431516--8431618 Score: 111
Period size: 35 Copynumber: 2.9 Consensus size: 36
8431506 TGTGATTTAG
* * *
8431516 AATCAGTACAGTGGCATACTTAACATGCGAATC-AA
1 AATCAGTATAATGGCATGCTTAACATGCGAATCAAA
* * *
8431551 AATCAATATAACGCCATGCTTAACATGCGAA-CAAA
1 AATCAGTATAATGGCATGCTTAACATGCGAATCAAA
* *
8431586 AATAAGTAATAATGGCATGCTTAACATGAGAAT
1 AATCAGT-ATAATGGCATGCTTAACATGCGAAT
8431619 TAGAATATCA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
34 1 0.02
35 32 0.59
36 21 0.39
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (36 bp):
AATCAGTATAATGGCATGCTTAACATGCGAATCAAA
Found at i:8437476 original size:32 final size:30
Alignment explanation
Indices: 8437440--8437509 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 30
8437430 GTTTCACTAT
* *
8437440 AGTTTCAAAATTTATGGTTTTCAGAATCTTAA
1 AGTTTCAAAATTTATAG-TTTCACAATC-TAA
* *
8437472 AGTTTTCACAGTTTATAGTTTCACAATCTAA
1 AG-TTTCAAAATTTATAGTTTCACAATCTAA
8437503 AGTTTCA
1 AGTTTCA
8437510 GTGCGTAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 5 0.15
31 5 0.15
32 11 0.33
33 12 0.36
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (30 bp):
AGTTTCAAAATTTATAGTTTCACAATCTAA
Found at i:8437506 original size:15 final size:15
Alignment explanation
Indices: 8437458--8437509 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
8437448 AATTTATGGT
*
8437458 TTTCAGAATCTTAAAG
1 TTTCACAATC-TAAAG
* * *
8437474 TTTTCACAGTTTATAG
1 -TTTCACAATCTAAAG
8437490 TTTCACAATCTAAAG
1 TTTCACAATCTAAAG
8437505 TTTCA
1 TTTCA
8437510 GTGCGTAAAG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 17 0.61
16 4 0.14
17 7 0.25
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTCACAATCTAAAG
Found at i:8438863 original size:35 final size:35
Alignment explanation
Indices: 8438822--8438917 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 35
8438812 AATTTCAGTG
* * *
8438822 GGCATGCTTTACATGCGATTTAGAATCAGTATAGT
1 GGCATGCTTAACATGCGAATTAGAATCAGTATAAT
* *
8438857 GGCATGCTTAACATGCGAATCAGAATTAGTATAAT
1 GGCATGCTTAACATGCGAATTAGAATCAGTATAAT
*
8438892 GACATGCTTAACATGCGAATTAGAAT
1 GGCATGCTTAACATGCGAATTAGAAT
8438918 ACCAACAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (35 bp):
GGCATGCTTAACATGCGAATTAGAATCAGTATAAT
Found at i:8446168 original size:34 final size:35
Alignment explanation
Indices: 8446102--8446168 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8446092 CAAACACCAG
*
8446102 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCTAGTAAATCATTTTACAGAAAAGT
* *
8446137 AAAACATTTTCTAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCTAGTAAATCATTTTACAGAAAA
8446169 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (35 bp):
AAAACATTTTCTAGTAAATCATTTTACAGAAAAGT
Found at i:8446602 original size:24 final size:24
Alignment explanation
Indices: 8446570--8446615 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
8446560 GAGACCCTCG
8446570 AAGCCCCACTTATCCGTGCCTACC
1 AAGCCCCACTTATCCGTGCCTACC
8446594 AAGCCCCACTTATCCGTGCCTA
1 AAGCCCCACTTATCCGTGCCTA
8446616 TTCGAGCGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.43, G:0.13, T:0.22
Consensus pattern (24 bp):
AAGCCCCACTTATCCGTGCCTACC
Found at i:8452942 original size:11 final size:9
Alignment explanation
Indices: 8452926--8452957 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
8452916 CGAAATAAAT
*
8452926 TATATATAG
1 TATATATAA
8452935 TATATATAA
1 TATATATAA
8452944 TATATATAA
1 TATATATAA
8452953 TATAT
1 TATAT
8452958 TTTTTAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (9 bp):
TATATATAA
Found at i:8454390 original size:38 final size:38
Alignment explanation
Indices: 8454348--8454433 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 38
8454338 GACCCATTTT
*
8454348 TAAAATAAA-CATTAAAAAATTATTTTAAAAATAAAAAA
1 TAAAATAAATCATTAAAAAAGTATTTT-AAAATAAAAAA
* * ** *
8454386 TAAAAAAAATTATTTTAAAAGTATTTTAAAATTAAAAA
1 TAAAATAAATCATTAAAAAAGTATTTTAAAATAAAAAA
8454424 TAAAAATAAA
1 T-AAAATAAA
8454434 AAATATATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
38 19 0.49
39 20 0.51
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (38 bp):
TAAAATAAATCATTAAAAAAGTATTTTAAAATAAAAAA
Found at i:8454895 original size:58 final size:59
Alignment explanation
Indices: 8454805--8454929 Score: 216
Period size: 58 Copynumber: 2.1 Consensus size: 59
8454795 AAATAAAAGA
*
8454805 ATTACATGCTAAGGATAATTCAATAAAATCACAAGCAATTCCTATTTCTAATAC-CTCC
1 ATTACTTGCTAAGGATAATTCAATAAAATCACAAGCAATTCCTATTTCTAATACTCTCC
*
8454863 ATTACTTGTTAAGGATAATTCAATAAAATCACAAGCAATTCCTATTTCTAATACTCTCC
1 ATTACTTGCTAAGGATAATTCAATAAAATCACAAGCAATTCCTATTTCTAATACTCTCC
*
8454922 CTTACTTG
1 ATTACTTG
8454930 ATGCATATCT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
58 52 0.83
59 11 0.17
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (59 bp):
ATTACTTGCTAAGGATAATTCAATAAAATCACAAGCAATTCCTATTTCTAATACTCTCC
Found at i:8460203 original size:23 final size:23
Alignment explanation
Indices: 8460177--8460228 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
8460167 TAATGTAAAT
* * *
8460177 TTATTTTCAGCAGTTACAAATCA
1 TTATTTTCAACAATTACAAACCA
*
8460200 TTATTTCCAACAATTACAAACCA
1 TTATTTTCAACAATTACAAACCA
8460223 TT-TTTT
1 TTATTTT
8460229 ACTATTACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (23 bp):
TTATTTTCAACAATTACAAACCA
Found at i:8462883 original size:22 final size:23
Alignment explanation
Indices: 8462858--8462917 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
8462848 TGGACTGAAT
8462858 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
8462880 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
8462902 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
8462918 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:8462885 original size:4 final size:4
Alignment explanation
Indices: 8462867--8462900 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
8462857 TATAAAAATT
8462867 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
8462901 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:8464306 original size:23 final size:22
Alignment explanation
Indices: 8464254--8464306 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
8464244 TCCACGTCTT
*
8464254 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
8464276 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
8464299 TTTCTTTT
1 TTTCTTTT
8464307 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:8470896 original size:27 final size:27
Alignment explanation
Indices: 8470865--8471042 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
8470855 TAAATTGTAC
8470865 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
8470892 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8470918 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
8470946 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
8470974 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8471001 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
8471028 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8471043 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:8470979 original size:82 final size:81
Alignment explanation
Indices: 8470866--8471021 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8470856 AAATTGTACA
* *
8470866 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
8470930 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
8470947 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
8471012 TGCGAGTTGA
65 TGCGAATTGA
8471022 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:8471033 original size:82 final size:81
Alignment explanation
Indices: 8470862--8471042 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
8470852 GATTAAATTG
* *
8470862 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
8470927 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
8470943 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
8471007 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
8471025 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
8471043 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:8479492 original size:80 final size:81
Alignment explanation
Indices: 8479355--8479512 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 81
8479345 TAATGATCAC
8479355 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
1 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
8479420 AGAGAATATCCTTAAT
66 AGAGAATATCCTTAAT
8479436 ATCTCTTAAACATAAACGTAAAACAAAAAAAA-CATGCTTACGATACAAGATTCAAAGGTAATGC
1 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
8479500 AGAGAATATCCTT
66 AGAGAATATCCTT
8479513 TCTTTTTTTC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 45 0.58
81 32 0.42
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.23
Consensus pattern (81 bp):
ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
AGAGAATATCCTTAAT
Found at i:8488012 original size:31 final size:31
Alignment explanation
Indices: 8487954--8488012 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
8487944 AAAGTATACT
* ****
8487954 AACAGTCACTCAACTTTGATCTCAATAATAA
1 AACAGTCACTCAACTTTCAAAGAAATAATAA
8487985 AACAGTCACTCAACTTTCAAAGAAATAA
1 AACAGTCACTCAACTTTCAAAGAAATAA
8488013 CAAATCAATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (31 bp):
AACAGTCACTCAACTTTCAAAGAAATAATAA
Found at i:8493037 original size:12 final size:11
Alignment explanation
Indices: 8493023--8493075 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
8493013 AACAGGGAAG
8493023 AAAGAAAGAAA
1 AAAGAAAGAAA
*
8493034 GAA-AAAGAAA
1 AAAGAAAGAAA
*
8493044 AAGGAAAGAAA
1 AAAGAAAGAAA
*
8493055 AAGAGAAAAGAAT
1 AA-AG-AAAGAAA
8493068 AAAGAAAG
1 AAAGAAAG
8493076 CCATTGCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 8 0.24
11 15 0.44
12 3 0.09
13 8 0.24
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:8493050 original size:7 final size:6
Alignment explanation
Indices: 8493031--8493074 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
8493021 AGAAAGAAAG
*
8493031 AAAGAA AAAGAA AAAG-G AAAGAA AAAGAGA AAAGAA TAAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGA-A AAAGAA -AAAGAA A
8493075 GCCATTGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.12
6 17 0.52
7 12 0.36
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:8493052 original size:17 final size:17
Alignment explanation
Indices: 8493020--8493064 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 17
8493010 CGAAACAGGG
*
8493020 AAGAAAGAAAGAAAGAAA
1 AAGAAA-AAGGAAAGAAA
8493038 AAGAAAAAGGAAAGAAA
1 AAGAAAAAGGAAAGAAA
8493055 AAGAGAAAAG
1 AAGA-AAAAG
8493065 AATAAAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAGAAAAAGGAAAGAAA
Found at i:8493052 original size:25 final size:24
Alignment explanation
Indices: 8493020--8493075 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
8493010 CGAAACAGGG
8493020 AAGAAAGAAAGAA-AGAAAAAGAA-A
1 AAGAAAGAAA-AAGAG-AAAAGAATA
8493044 AAGGAAAGAAAAAGAGAAAAGAATA
1 AA-GAAAGAAAAAGAGAAAAGAATA
8493069 AAGAAAG
1 AAGAAAG
8493076 CCATTGCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (24 bp):
AAGAAAGAAAAAGAGAAAAGAATA
Found at i:8495219 original size:11 final size:11
Alignment explanation
Indices: 8495203--8495246 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
8495193 TTCTTTGGAT
8495203 TCAAATATGAC
1 TCAAATATGAC
*
8495214 TCAAATATGAT
1 TCAAATATGAC
* *
8495225 TTAAATATGAA
1 TCAAATATGAC
8495236 TCAAATATGAC
1 TCAAATATGAC
8495247 AAATCAGATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (11 bp):
TCAAATATGAC
Found at i:8495225 original size:22 final size:22
Alignment explanation
Indices: 8495200--8495245 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
8495190 AGCTTCTTTG
*
8495200 GATTCAAATATGACTCAAATAT
1 GATTCAAATATGAATCAAATAT
*
8495222 GATTTAAATATGAATCAAATAT
1 GATTCAAATATGAATCAAATAT
8495244 GA
1 GA
8495246 CAAATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (22 bp):
GATTCAAATATGAATCAAATAT
Found at i:8495462 original size:90 final size:90
Alignment explanation
Indices: 8495343--8495661 Score: 449
Period size: 90 Copynumber: 3.5 Consensus size: 90
8495333 ATTTCTTTGG
*
8495343 TTATTGTCTGTCATGTGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
1 TTATTGTCTGTCATATGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
*
8495408 TGACATAAATGAATTTCTTTGTATT
66 TGACATAAATGGATTTCTTTGTATT
** * *
8495433 TTATTGTCTACCATATGTATGACAAAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
1 TTATTGTCTGTCATATGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
*
8495498 AGACATAAATGGATTTCTTTGTATT
66 TGACATAAATGGATTTCTTTGTATT
* ** * *
8495523 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGAACT
1 TTATTGTCTGTCATATGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
*
8495588 TGACAAAAATGGATTTCTTTGTATT
66 TGACATAAATGGATTTCTTTGTATT
** * * * * **
8495613 AAAGTGTATGGCATGTGCATGACAGAAATGAATTTGTTTGTATTAAATT
1 TTATTGTCTGTCATATGCATGACAGAAACAAATTTGTTTGTATTAAATT
8495662 ATTTTTTGTA
Statistics
Matches: 204, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 204 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (90 bp):
TTATTGTCTGTCATATGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
TGACATAAATGGATTTCTTTGTATT
Found at i:8495483 original size:44 final size:45
Alignment explanation
Indices: 8495361--8495484 Score: 117
Period size: 46 Copynumber: 2.8 Consensus size: 45
8495351 TGTCATGTGC
* ****
8495361 ATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTA
1 ATGACAAAAACAAATTTGTTTGTATTAAATTGTTACCATATTGTA
* ** * **
8495406 CATGACATAAATGAATTTCTTTGTATTTTATTGTCTACCATA-TGT-
1 -ATGACAAAAACAAATTTGTTTGTATTAAATTGT-TACCATATTGTA
8495451 ATGACAAAAACAAATTTGTTTGTATTAAATTGTT
1 ATGACAAAAACAAATTTGTTTGTATTAAATTGTT
8495485 TGGTTATTGT
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
43 1 0.02
44 27 0.44
46 30 0.49
47 3 0.05
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (45 bp):
ATGACAAAAACAAATTTGTTTGTATTAAATTGTTACCATATTGTA
Found at i:8497688 original size:31 final size:31
Alignment explanation
Indices: 8497653--8497759 Score: 105
Period size: 31 Copynumber: 3.4 Consensus size: 31
8497643 AATATTATCA
8497653 CCGAATGTATATACACTTTAAACATGAATAG
1 CCGAATGTATATACACTTTAAACATGAATAG
* *
8497684 CCGAATGCT-TATACAC-ATAACAAAT-ATTATCA-
1 CCGAATG-TATATACACTTTAA-ACATGA--AT-AG
8497716 CCGAATGTATATACACTTTAAACATGAATAG
1 CCGAATGTATATACACTTTAAACATGAATAG
* *
8497747 CTGAATGCATATA
1 CCGAATGTATATA
8497760 TACATATGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
30 5 0.08
31 31 0.51
32 20 0.33
33 5 0.08
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (31 bp):
CCGAATGTATATACACTTTAAACATGAATAG
Found at i:8497690 original size:71 final size:68
Alignment explanation
Indices: 8497580--8497799 Score: 261
Period size: 63 Copynumber: 3.2 Consensus size: 68
8497570 AACACTTAAA
* * * * *
8497580 ACCGAATGCATATATAATTTAAAACATGAATAGCCGAATGTGTATATACATATATGCTTAACAAA
1 ACCGAATGTATATACACTTT-AAACATGAATAGCCGAATG-ATATATAC--ATATGCATAACAAA
8497645 TATTATC
62 TATTATC
*
8497652 ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGCT-TATAC--A--CATAACAAATATT
1 ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGATATATACATATGCATAACAAATATT
8497712 ATC
66 ATC
* * *
8497715 ACCGAATGTATATACACTTTAAACATGAATAGCTGAATGCATATATACATATGCACAACAAGTAT
1 ACCGAATGTATATACACTTTAAACATGAATAGCCGAATG-ATATATACATATGCATAACAAATAT
8497780 TATC
65 TATC
* *
8497784 ACTGAATGTAAATACA
1 ACCGAATGTATATACA
8497800 TGTTCTTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
63 53 0.40
64 1 0.01
65 6 0.05
67 1 0.01
69 33 0.25
70 1 0.01
71 19 0.15
72 17 0.13
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (68 bp):
ACCGAATGTATATACACTTTAAACATGAATAGCCGAATGATATATACATATGCATAACAAATATT
ATC
Found at i:8497722 original size:32 final size:33
Alignment explanation
Indices: 8497638--8497732 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 33
8497628 CATATATGCT
*
8497638 TAACAAATATTATCACCGAATGTATATACACTT
1 TAACAAATATTATCACCGAATGTATATACACTA
*
8497671 TAA-ACATGA--AT-AGCCGAATGCT-TATACAC-A
1 TAACAAAT-ATTATCA-CCGAATG-TATATACACTA
8497701 TAACAAATATTATCACCGAATGTATATACACT
1 TAACAAATATTATCACCGAATGTATATACACT
8497733 TTAAACATGA
Statistics
Matches: 50, Mismatches: 3, Indels: 18
0.70 0.04 0.25
Matches are distributed among these distances:
30 5 0.10
31 20 0.40
32 20 0.40
33 5 0.10
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (33 bp):
TAACAAATATTATCACCGAATGTATATACACTA
Found at i:8497996 original size:41 final size:41
Alignment explanation
Indices: 8497924--8498017 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
8497914 ATCGGCTTTT
* * * * *
8497924 AGCCTGCTAGACTTATAGTCCGAATTGTTTCACCGGCATTA
1 AGCCTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCA
8497965 AGCCTGCTAGACATAAAG-CCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACATAAAGTCC-GAAATATTTCACCGGCATCA
*
8498006 AACCTGCTAGAC
1 AGCCTGCTAGAC
8498018 GTAACGTCTG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.04
41 44 0.96
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCCGAAATATTTCACCGGCATCA
Found at i:8498531 original size:8 final size:8
Alignment explanation
Indices: 8498518--8498551 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
8498508 ATCCGAGCAT
8498518 TATATACA
1 TATATACA
*
8498526 TATATATA
1 TATATACA
*
8498534 CATATACA
1 TATATACA
8498542 TATATACA
1 TATATACA
8498550 TA
1 TA
8498552 CTCATACATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (8 bp):
TATATACA
Found at i:8501328 original size:20 final size:20
Alignment explanation
Indices: 8501303--8501342 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8501293 CAAAAATATG
8501303 ATATTTATTTTAATTAATTT
1 ATATTTATTTTAATTAATTT
8501323 ATATTTATTTTAATTAATTT
1 ATATTTATTTTAATTAATTT
8501343 GATTTGTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATTTATTTTAATTAATTT
Found at i:8503216 original size:50 final size:50
Alignment explanation
Indices: 8503092--8503323 Score: 254
Period size: 50 Copynumber: 4.7 Consensus size: 50
8503082 AATAATAACA
* ** * *
8503092 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * * * *
8503141 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGA-GTTTCCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-CATCTCGG
* * * ** *
8503191 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
8503241 TGCCAACGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
8503291 TGCCAACGCCATGTCCCAGACATGGTCTTACAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAT
8503324 TTGTATTCGA
Statistics
Matches: 155, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 5 0.03
49 37 0.24
50 111 0.72
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:8509595 original size:85 final size:85
Alignment explanation
Indices: 8509452--8509619 Score: 261
Period size: 85 Copynumber: 2.0 Consensus size: 85
8509442 CTATTCCGGT
* *
8509452 AACGGAGACGAGTTAGGGGTGTTACACCAACTCACCAAGGAATTGCCCCAACTTACCAAGAAG-T
1 AACGGAGACGAGTTAGGAGTGTTACACCAACTCACCAAGAAATTGCCCCAACTTACCAAGAAGCT
*
8509516 TTCCCCAAGAGAAAAGCTTGC
66 GT-CCCAAGAGAAAAGCTTGC
8509537 AACGGAGAC-AGATTAGGAGTGTTACACCAACTCACCAAGAAATAT-CCCCAACTTACCAAGAAG
1 AACGGAGACGAG-TTAGGAGTGTTACACCAACTCACCAAGAAAT-TGCCCCAACTTACCAAGAAG
8509600 CTGTCCCAAGAGAAAAGCTT
64 CTGTCCCAAGAGAAAAGCTT
8509620 TCATTCAAGA
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
84 2 0.03
85 72 0.94
86 3 0.04
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (85 bp):
AACGGAGACGAGTTAGGAGTGTTACACCAACTCACCAAGAAATTGCCCCAACTTACCAAGAAGCT
GTCCCAAGAGAAAAGCTTGC
Found at i:8510684 original size:50 final size:50
Alignment explanation
Indices: 8510600--8510699 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
8510590 TCAAAAACCT
* *
8510600 CAATACCAACAGTCACATAAGCTGGTTTTCCATTTCAACAACAACAACAA
1 CAATACCAACAGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
* * * *
8510650 CAATACCAACTA-TCATATAAGTTGATTTTTCATTTAAACAACAACGACAA
1 CAATACCAAC-AGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
8510700 TATTACAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 42 0.98
51 1 0.02
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (50 bp):
CAATACCAACAGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
Found at i:8515363 original size:5 final size:5
Alignment explanation
Indices: 8515353--8515377 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8515343 TAGTGATAGA
8515353 GAGAG GAGAG GAGAG GAGAG GAGAG
1 GAGAG GAGAG GAGAG GAGAG GAGAG
8515378 AGATCCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GAGAG
Found at i:8515864 original size:29 final size:29
Alignment explanation
Indices: 8515799--8515865 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
8515789 TATTTTTTTA
* **
8515799 AATGTATAATTAAATTAAATTAAAAATTT
1 AATGTATATTTAAACCAAATTAAAAATTT
* ** *
8515828 TACATATATTTAAACCAAATTCAAAATTT
1 AATGTATATTTAAACCAAATTAAAAATTT
8515857 AATGTATAT
1 AATGTATAT
8515866 AATTACAAAA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (29 bp):
AATGTATATTTAAACCAAATTAAAAATTT
Found at i:8516190 original size:27 final size:29
Alignment explanation
Indices: 8516158--8516211 Score: 85
Period size: 27 Copynumber: 1.9 Consensus size: 29
8516148 AATTTTTTTT
*
8516158 TTCAAAATCTATAAAA-ATT-AAAACAAA
1 TTCAAAATATATAAAATATTCAAAACAAA
8516185 TTCAAAATATATAAAATATTCAAAACA
1 TTCAAAATATATAAAATATTCAAAACA
8516212 TTCTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 15 0.62
28 3 0.12
29 6 0.25
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (29 bp):
TTCAAAATATATAAAATATTCAAAACAAA
Found at i:8516214 original size:27 final size:26
Alignment explanation
Indices: 8516158--8516219 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
8516148 AATTTTTTTT
*
8516158 TTCAAAATCTATAAAAATTAAAACAAA
1 TTCAAAATATATAAAAATTAAAAC-AA
8516185 TTCAAAATATATAAAATATTCAAAAC-A
1 TTCAAAATATATAAAA-ATT-AAAACAA
8516212 TTCTAAAA
1 TTC-AAAA
8516220 AATTCTATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 19 0.61
28 7 0.23
29 5 0.16
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (26 bp):
TTCAAAATATATAAAAATTAAAACAA
Found at i:8516224 original size:19 final size:18
Alignment explanation
Indices: 8516182--8516224 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
8516172 AAATTAAAAC
*
8516182 AAATTCAAAATATATAAA
1 AAATTCAAAACATATAAA
* *
8516200 ATATTCAAAACATTCTAAA
1 AAATTCAAAACA-TATAAA
8516219 AAATTC
1 AAATTC
8516225 TATATAGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTCAAAACATATAAA
Found at i:8516631 original size:169 final size:169
Alignment explanation
Indices: 8516449--8516793 Score: 672
Period size: 169 Copynumber: 2.0 Consensus size: 169
8516439 ATTACTCAAC
*
8516449 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCGACGAAATGGGT
1 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
8516514 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
66 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
8516579 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
131 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
8516618 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
1 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
8516683 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
66 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
*
8516748 ATTACTGAGCATGAGTGGTTTTGATGCAGAATTGATAGT
131 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
8516787 CTTTTTT
1 CTTTTTT
8516794 GGAATAATTA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 174 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (169 bp):
CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
Found at i:8518486 original size:21 final size:21
Alignment explanation
Indices: 8518462--8518505 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8518452 GAAACTTTAG
*
8518462 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
8518483 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
8518504 TA
1 TA
8518506 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:8518747 original size:7 final size:7
Alignment explanation
Indices: 8518735--8518765 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
8518725 TCAAAAAAGT
8518735 ATTTCGA
1 ATTTCGA
8518742 ATTTCGA
1 ATTTCGA
8518749 ATTTCGA
1 ATTTCGA
*
8518756 ATTTCTA
1 ATTTCGA
8518763 ATT
1 ATT
8518766 CTAAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (7 bp):
ATTTCGA
Found at i:8518857 original size:27 final size:27
Alignment explanation
Indices: 8518819--8518874 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
8518809 AAAATATGTC
*
8518819 ATAAGTGCTAACGAAAGTGTTCTTTCA
1 ATAAGTGCTAACGAAAGTGTTATTTCA
8518846 ATAAGTGCTAACGAAAGTGTTATTTCA
1 ATAAGTGCTAACGAAAGTGTTATTTCA
8518873 AT
1 AT
8518875 TAGAACCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (27 bp):
ATAAGTGCTAACGAAAGTGTTATTTCA
Found at i:8519751 original size:23 final size:24
Alignment explanation
Indices: 8519690--8519752 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 24
8519680 CTCAAAACTT
*
8519690 TTTTATATATATTTAGATTTTTATTA
1 TTTTATA-AT-TTTAGATTTTGATTA
* *
8519716 TTTT-TAAAATTTA-ATTTTGATTC
1 TTTTAT-AATTTTAGATTTTGATTA
8519739 TTTTATAATTTTAG
1 TTTTATAATTTTAG
8519753 GATCAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
23 18 0.60
24 5 0.17
25 2 0.07
26 5 0.17
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (24 bp):
TTTTATAATTTTAGATTTTGATTA
Found at i:8521191 original size:21 final size:21
Alignment explanation
Indices: 8521123--8521193 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
8521113 TTTTTTGTAA
* * *
8521123 TATACTTTTTTGTCATAATTT
1 TATAATTTTTTGTTAAAATTT
* * *
8521144 TAGAATTTTTTAAGATTTAAATAT
1 TATAATTTTTT--G-TTAAAATTT
8521168 TATAATTTTTTGTTAAAATTT
1 TATAATTTTTTGTTAAAATTT
8521189 TATAA
1 TATAA
8521194 ATACACATAA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
21 21 0.55
22 1 0.03
23 1 0.03
24 15 0.39
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (21 bp):
TATAATTTTTTGTTAAAATTT
Found at i:8521254 original size:20 final size:21
Alignment explanation
Indices: 8521211--8521255 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8521201 TAAGTTATTT
* *
8521211 TTTATAATATAACTTTTTAGAA
1 TTTATAATATAAC-GTTTAAAA
8521233 TTTATAATATAA-GTTTAAAA
1 TTTATAATATAACGTTTAAAA
8521253 TTT
1 TTT
8521256 TTTAACTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTATAATATAACGTTTAAAA
Found at i:8527325 original size:15 final size:15
Alignment explanation
Indices: 8527291--8527325 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8527281 TATATATGCC
8527291 ACAATAATAAATACA
1 ACAATAATAAATACA
* *
8527306 TCAATAATAAATATA
1 ACAATAATAAATACA
8527321 ACAAT
1 ACAAT
8527326 GGCATAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:8527639 original size:11 final size:11
Alignment explanation
Indices: 8527623--8527659 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
8527613 ACGTATATAT
8527623 ATAAAATAATA
1 ATAAAATAATA
8527634 ATAAAATAA-A
1 ATAAAATAATA
8527644 ATAAAA-AATA
1 ATAAAATAATA
8527654 AGTAAA
1 A-TAAA
8527660 TATTTAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.08
10 9 0.38
11 13 0.54
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:8527725 original size:24 final size:24
Alignment explanation
Indices: 8527696--8527746 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 24
8527686 ATATACGTAT
8527696 AAATAT-AAAAATATTCATTTAAAA
1 AAATATAAAAAATATTCA-TTAAAA
8527720 AAATATAGAAAAATATTCATTAAAA
1 AAATATA-AAAAATATTCATTAAAA
8527745 AA
1 AA
8527747 TAGAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 6 0.24
25 8 0.32
26 11 0.44
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
AAATATAAAAAATATTCATTAAAA
Found at i:8527749 original size:22 final size:24
Alignment explanation
Indices: 8527696--8527757 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 24
8527686 ATATACGTAT
*
8527696 AAATATAAAAATATTCATTTAAAAA
1 AAATAGAAAAATATTCATTT-AAAA
8527721 AATATAGAAAAATATTCA-TT-AAA
1 AA-ATAGAAAAATATTCATTTAAAA
*
8527744 AAATAGAAATATAT
1 AAATAGAAAAATAT
8527758 ATGCATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 11 0.32
23 5 0.15
25 4 0.12
26 14 0.41
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (24 bp):
AAATAGAAAAATATTCATTTAAAA
Found at i:8527792 original size:19 final size:19
Alignment explanation
Indices: 8527764--8527803 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
8527754 ATATATGCAT
8527764 ATATAGATAAAATAATTAC
1 ATATAGATAAAATAATTAC
*
8527783 ATATATATAAAATAATTAC
1 ATATAGATAAAATAATTAC
8527802 AT
1 AT
8527804 TATCAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAGATAAAATAATTAC
Found at i:8531877 original size:22 final size:21
Alignment explanation
Indices: 8531851--8531915 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 21
8531841 ATTAAATTAA
*
8531851 TAAATACTATTAAAATAAGTAT
1 TAAATACTATTAAAATAA-AAT
* *
8531873 TAAATTA-AATTAAATTAAAAT
1 TAAA-TACTATTAAAATAAAAT
*
8531894 TTAA-ACTATTAAAATAAAAT
1 TAAATACTATTAAAATAAAAT
8531914 TA
1 TA
8531916 TTTTTGGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.38
21 5 0.15
22 13 0.38
23 2 0.06
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAATACTATTAAAATAAAAT
Found at i:8534762 original size:27 final size:27
Alignment explanation
Indices: 8534691--8534764 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
8534681 TTTCATCTCT
*
8534691 ATTTTACCCCTGGTAAAA-TTTTGACA
1 ATTTTACCCTTGGTAAAATTTTTGACA
* * * *
8534717 ATTTTACCCTCGATGAAATTTTTGACG
1 ATTTTACCCTTGGTAAAATTTTTGACA
*
8534744 ATTTTACCTTTGGTAAAATTT
1 ATTTTACCCTTGGTAAAATTT
8534765 CGAGAAAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 14 0.37
27 24 0.63
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTGGTAAAATTTTTGACA
Found at i:8535751 original size:27 final size:27
Alignment explanation
Indices: 8535680--8535753 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
8535670 TTTCATCTCT
*
8535680 ATTTTACCCCTGGTAAAA-TTTTGACA
1 ATTTTACCCTTGGTAAAATTTTTGACA
* * * *
8535706 ATTTTACCCTCGATGAAATTTTTGACG
1 ATTTTACCCTTGGTAAAATTTTTGACA
*
8535733 ATTTTACCTTTGGTAAAATTT
1 ATTTTACCCTTGGTAAAATTT
8535754 CGAGAAAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 14 0.37
27 24 0.63
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTGGTAAAATTTTTGACA
Found at i:8536018 original size:989 final size:989
Alignment explanation
Indices: 8534102--8536079 Score: 3956
Period size: 989 Copynumber: 2.0 Consensus size: 989
8534092 CCTAAACTTC
8534102 GCAAATGATTTCTGAAGGAAAAAAATACCCAAGGTTTTCTAAAATATCACCATCGACAATAAAAT
1 GCAAATGATTTCTGAAGGAAAAAAATACCCAAGGTTTTCTAAAATATCACCATCGACAATAAAAT
8534167 GAATCCTAAGGACAGATGACTTGAAAACCAATGTTTTAATCTAACTTGAAACGACAAGAACAATG
66 GAATCCTAAGGACAGATGACTTGAAAACCAATGTTTTAATCTAACTTGAAACGACAAGAACAATG
8534232 ATTTTCCTAAAATTAGTCGGATTAGGGTTTTTAAAAGATTAGCGAGTTTACTTAGTCATTCCGGT
131 ATTTTCCTAAAATTAGTCGGATTAGGGTTTTTAAAAGATTAGCGAGTTTACTTAGTCATTCCGGT
8534297 GGTCAATGTAGCCTTCATGATACAGTTATAACATCTAAGCCGGGTCAGGGAGGTTAAACAATCTC
196 GGTCAATGTAGCCTTCATGATACAGTTATAACATCTAAGCCGGGTCAGGGAGGTTAAACAATCTC
8534362 TTCAAGTTGCGTTAATAGCTTTACTGGTGCCATCTATTTATAAGAAGAGAATGTAGAACCCTTTT
261 TTCAAGTTGCGTTAATAGCTTTACTGGTGCCATCTATTTATAAGAAGAGAATGTAGAACCCTTTT
8534427 TGAGTTATAATGATTTATTTAAAATAGAAAAACATCCTACTTAGAGTAGGAGTGGGGTGGATGGC
326 TGAGTTATAATGATTTATTTAAAATAGAAAAACATCCTACTTAGAGTAGGAGTGGGGTGGATGGC
8534492 ACACCCTAATATTCCTACTAGCTTTGTCTCTCATTTCATGTTATATGAGGGGTTTGGGCCTCTCT
391 ACACCCTAATATTCCTACTAGCTTTGTCTCTCATTTCATGTTATATGAGGGGTTTGGGCCTCTCT
8534557 CACATCAGGTCTAATTACGAGTACTTCTTAGGCCTTTTGACCCAGTACTTTGCAATGTGATCCAA
456 CACATCAGGTCTAATTACGAGTACTTCTTAGGCCTTTTGACCCAGTACTTTGCAATGTGATCCAA
8534622 CTCTATTAGTTTTTTTCTATTTCTCAAAATAAACTTTAATATTTTATATTAAACAATTTTTTCAT
521 CTCTATTAGTTTTTTTCTATTTCTCAAAATAAACTTTAATATTTTATATTAAACAATTTTTTCAT
8534687 CTCTATTTTACCCCTGGTAAAATTTTGACAATTTTACCCTCGATGAAATTTTTGACGATTTTACC
586 CTCTATTTTACCCCTGGTAAAATTTTGACAATTTTACCCTCGATGAAATTTTTGACGATTTTACC
8534752 TTTGGTAAAATTTCGAGAAAATATGTCTAGTATTTCATAACTCAACATGTTCATTGTGACTGAAT
651 TTTGGTAAAATTTCGAGAAAATATGTCTAGTATTTCATAACTCAACATGTTCATTGTGACTGAAT
8534817 GATTTATTTTCATTCTCAGGCTTCAAAAGAGCTCAAAAACATAAACTCATCATTCGATCATTTTT
716 GATTTATTTTCATTCTCAGGCTTCAAAAGAGCTCAAAAACATAAACTCATCATTCGATCATTTTT
8534882 AAGTAATCCATATAAAATTGCAAATGGATCATTTCTATTTTTGGAAACCTACATTCATTTCCAAA
781 AAGTAATCCATATAAAATTGCAAATGGATCATTTCTATTTTTGGAAACCTACATTCATTTCCAAA
8534947 TGATTCCATTTTTTCCATTTCGGAAAAAAATCATAATCAATCCTGAATTTTTTTCATTTCTCTTT
846 TGATTCCATTTTTTCCATTTCGGAAAAAAATCATAATCAATCCTGAATTTTTTTCATTTCTCTTT
8535012 TCCTATTCGTTCTGTTCATTTCTATTCAAACTCACAATTCATTTCCAATTTCAACGAGCTAGCGA
911 TCCTATTCGTTCTGTTCATTTCTATTCAAACTCACAATTCATTTCCAATTTCAACGAGCTAGCGA
8535077 GGGACCAATCGAAA
976 GGGACCAATCGAAA
8535091 GCAAATGATTTCTGAAGGAAAAAAATACCCAAGGTTTTCTAAAATATCACCATCGACAATAAAAT
1 GCAAATGATTTCTGAAGGAAAAAAATACCCAAGGTTTTCTAAAATATCACCATCGACAATAAAAT
8535156 GAATCCTAAGGACAGATGACTTGAAAACCAATGTTTTAATCTAACTTGAAACGACAAGAACAATG
66 GAATCCTAAGGACAGATGACTTGAAAACCAATGTTTTAATCTAACTTGAAACGACAAGAACAATG
8535221 ATTTTCCTAAAATTAGTCGGATTAGGGTTTTTAAAAGATTAGCGAGTTTACTTAGTCATTCCGGT
131 ATTTTCCTAAAATTAGTCGGATTAGGGTTTTTAAAAGATTAGCGAGTTTACTTAGTCATTCCGGT
8535286 GGTCAATGTAGCCTTCATGATACAGTTATAACATCTAAGCCGGGTCAGGGAGGTTAAACAATCTC
196 GGTCAATGTAGCCTTCATGATACAGTTATAACATCTAAGCCGGGTCAGGGAGGTTAAACAATCTC
8535351 TTCAAGTTGCGTTAATAGCTTTACTGGTGCCATCTATTTATAAGAAGAGAATGTAGAACCCTTTT
261 TTCAAGTTGCGTTAATAGCTTTACTGGTGCCATCTATTTATAAGAAGAGAATGTAGAACCCTTTT
8535416 TGAGTTATAATGATTTATTTAAAATAGAAAAACATCCTACTTAGAGTAGGAGTGGGGTGGATGGC
326 TGAGTTATAATGATTTATTTAAAATAGAAAAACATCCTACTTAGAGTAGGAGTGGGGTGGATGGC
8535481 ACACCCTAATATTCCTACTAGCTTTGTCTCTCATTTCATGTTATATGAGGGGTTTGGGCCTCTCT
391 ACACCCTAATATTCCTACTAGCTTTGTCTCTCATTTCATGTTATATGAGGGGTTTGGGCCTCTCT
8535546 CACATCAGGTCTAATTACGAGTACTTCTTAGGCCTTTTGACCCAGTACTTTGCAATGTGATCCAA
456 CACATCAGGTCTAATTACGAGTACTTCTTAGGCCTTTTGACCCAGTACTTTGCAATGTGATCCAA
8535611 CTCTATTAGTTTTTTTCTATTTCTCAAAATAAACTTTAATATTTTATATTAAACAATTTTTTCAT
521 CTCTATTAGTTTTTTTCTATTTCTCAAAATAAACTTTAATATTTTATATTAAACAATTTTTTCAT
8535676 CTCTATTTTACCCCTGGTAAAATTTTGACAATTTTACCCTCGATGAAATTTTTGACGATTTTACC
586 CTCTATTTTACCCCTGGTAAAATTTTGACAATTTTACCCTCGATGAAATTTTTGACGATTTTACC
8535741 TTTGGTAAAATTTCGAGAAAATATGTCTAGTATTTCATAACTCAACATGTTCATTGTGACTGAAT
651 TTTGGTAAAATTTCGAGAAAATATGTCTAGTATTTCATAACTCAACATGTTCATTGTGACTGAAT
8535806 GATTTATTTTCATTCTCAGGCTTCAAAAGAGCTCAAAAACATAAACTCATCATTCGATCATTTTT
716 GATTTATTTTCATTCTCAGGCTTCAAAAGAGCTCAAAAACATAAACTCATCATTCGATCATTTTT
8535871 AAGTAATCCATATAAAATTGCAAATGGATCATTTCTATTTTTGGAAACCTACATTCATTTCCAAA
781 AAGTAATCCATATAAAATTGCAAATGGATCATTTCTATTTTTGGAAACCTACATTCATTTCCAAA
8535936 TGATTCCATTTTTTCCATTTCGGAAAAAAATCATAATCAATCCTGAATTTTTTTCATTTCTCTTT
846 TGATTCCATTTTTTCCATTTCGGAAAAAAATCATAATCAATCCTGAATTTTTTTCATTTCTCTTT
8536001 TCCTATTCGTTCTGTTCATTTCTATTCAAACTCACAATTCATTTCCAATTTCAACGAGCTAGCGA
911 TCCTATTCGTTCTGTTCATTTCTATTCAAACTCACAATTCATTTCCAATTTCAACGAGCTAGCGA
8536066 GGGACCAATCGAAA
976 GGGACCAATCGAAA
8536080 ATATGTAATT
Statistics
Matches: 989, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
989 989 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (989 bp):
GCAAATGATTTCTGAAGGAAAAAAATACCCAAGGTTTTCTAAAATATCACCATCGACAATAAAAT
GAATCCTAAGGACAGATGACTTGAAAACCAATGTTTTAATCTAACTTGAAACGACAAGAACAATG
ATTTTCCTAAAATTAGTCGGATTAGGGTTTTTAAAAGATTAGCGAGTTTACTTAGTCATTCCGGT
GGTCAATGTAGCCTTCATGATACAGTTATAACATCTAAGCCGGGTCAGGGAGGTTAAACAATCTC
TTCAAGTTGCGTTAATAGCTTTACTGGTGCCATCTATTTATAAGAAGAGAATGTAGAACCCTTTT
TGAGTTATAATGATTTATTTAAAATAGAAAAACATCCTACTTAGAGTAGGAGTGGGGTGGATGGC
ACACCCTAATATTCCTACTAGCTTTGTCTCTCATTTCATGTTATATGAGGGGTTTGGGCCTCTCT
CACATCAGGTCTAATTACGAGTACTTCTTAGGCCTTTTGACCCAGTACTTTGCAATGTGATCCAA
CTCTATTAGTTTTTTTCTATTTCTCAAAATAAACTTTAATATTTTATATTAAACAATTTTTTCAT
CTCTATTTTACCCCTGGTAAAATTTTGACAATTTTACCCTCGATGAAATTTTTGACGATTTTACC
TTTGGTAAAATTTCGAGAAAATATGTCTAGTATTTCATAACTCAACATGTTCATTGTGACTGAAT
GATTTATTTTCATTCTCAGGCTTCAAAAGAGCTCAAAAACATAAACTCATCATTCGATCATTTTT
AAGTAATCCATATAAAATTGCAAATGGATCATTTCTATTTTTGGAAACCTACATTCATTTCCAAA
TGATTCCATTTTTTCCATTTCGGAAAAAAATCATAATCAATCCTGAATTTTTTTCATTTCTCTTT
TCCTATTCGTTCTGTTCATTTCTATTCAAACTCACAATTCATTTCCAATTTCAACGAGCTAGCGA
GGGACCAATCGAAA
Found at i:8547348 original size:16 final size:17
Alignment explanation
Indices: 8547316--8547350 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8547306 ATTTAATCTT
*
8547316 TATATAACATAACATAA
1 TATATAACATAAAATAA
8547333 TATATAA-ATAAAATAA
1 TATATAACATAAAATAA
8547349 TA
1 TA
8547351 AGTTACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TATATAACATAAAATAA
Found at i:8551774 original size:30 final size:30
Alignment explanation
Indices: 8551718--8551775 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8551708 AAAATTTTAG
* *
8551718 AATTTAATTCTTATACTTTTATTTTCAATA
1 AATTTAATTCCTATACTTTTAGTTTCAATA
*
8551748 AATTTAA-TCCTATATTTTTCAGTTTCAA
1 AATTTAATTCCTATACTTTT-AGTTTCAA
8551776 AATTCAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (30 bp):
AATTTAATTCCTATACTTTTAGTTTCAATA
Found at i:8552317 original size:15 final size:15
Alignment explanation
Indices: 8552297--8552329 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8552287 ACATTTCACT
*
8552297 TTTATGTCTTTTGTA
1 TTTATGTCTTTTATA
8552312 TTTATGTCTTTTATA
1 TTTATGTCTTTTATA
8552327 TTT
1 TTT
8552330 TGCATACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.09, T:0.70
Consensus pattern (15 bp):
TTTATGTCTTTTATA
Found at i:8557106 original size:16 final size:17
Alignment explanation
Indices: 8557080--8557123 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
8557070 TATATATATC
*
8557080 TATTATAAAAA-ATGTG
1 TATTTTAAAAACATGTG
8557096 TATTTTGAAAAACATGTG
1 TATTTT-AAAAACATGTG
8557114 TATTTTAAAA
1 TATTTTAAAA
8557124 CGTGCATGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.41
Consensus pattern (17 bp):
TATTTTAAAAACATGTG
Found at i:8558321 original size:23 final size:24
Alignment explanation
Indices: 8558289--8558335 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8558279 GGAGCGACAA
* *
8558289 GTGTGGCGTGTGGGCGCTGTTGCG
1 GTGTGGCGTGTGGGAGCTGCTGCG
8558313 GTGT-GCGTGTGGGAGCTGCTGCG
1 GTGTGGCGTGTGGGAGCTGCTGCG
8558336 CCTAGGGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.02, C:0.17, G:0.53, T:0.28
Consensus pattern (24 bp):
GTGTGGCGTGTGGGAGCTGCTGCG
Found at i:8566606 original size:22 final size:23
Alignment explanation
Indices: 8566581--8566628 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
8566571 CTCTCTAATC
8566581 CTCTTAAATTT-CTTCCAAAATT
1 CTCTTAAATTTCCTTCCAAAATT
*
8566603 CTC-TCAATTTCCTTCCAAAATT
1 CTCTTAAATTTCCTTCCAAAATT
8566625 CTCT
1 CTCT
8566629 GAAACCCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (23 bp):
CTCTTAAATTTCCTTCCAAAATT
Found at i:8566613 original size:21 final size:22
Alignment explanation
Indices: 8566587--8566628 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8566577 AATCCTCTTA
8566587 AATTT-CTTCCAAAATTCTCTC
1 AATTTCCTTCCAAAATTCTCTC
8566608 AATTTCCTTCCAAAATTCTCT
1 AATTTCCTTCCAAAATTCTCT
8566629 GAAACCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTTCCTTCCAAAATTCTCTC
Found at i:8566659 original size:51 final size:51
Alignment explanation
Indices: 8566603--8566715 Score: 174
Period size: 51 Copynumber: 2.2 Consensus size: 51
8566593 TTCCAAAATT
*
8566603 CTCTCAATTTCCTTCCAAAATTCTCTGAAACCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
** *
8566654 CTCTCAATTTCCTTTGAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
8566705 C-CTTCAATTTC
1 CTC-TCAATTTC
8566716 ATTTTTTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
50 1 0.02
51 56 0.98
ACGTcount: A:0.28, C:0.27, G:0.02, T:0.43
Consensus pattern (51 bp):
CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
Found at i:8566743 original size:10 final size:10
Alignment explanation
Indices: 8566716--8566781 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
8566706 CTTCAATTTC
*
8566716 ATTTTTTAAA
1 ATTTTTTTAA
**
8566726 ATAATTTTAA
1 ATTTTTTTAA
*
8566736 ATTTTTTTAT
1 ATTTTTTTAA
8566746 ATTTTTTTAAA
1 ATTTTTTT-AA
**
8566757 ATAATTTTAA
1 ATTTTTTTAA
*
8566767 ATTTTTTTAT
1 ATTTTTTTAA
8566777 ATTTT
1 ATTTT
8566782 CATCAATGGC
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
10 36 0.84
11 7 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:8566755 original size:31 final size:31
Alignment explanation
Indices: 8566717--8566781 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
8566707 TTCAATTTCA
8566717 TTTTTTAAAATAATTTTAAATTTTTTTATAT
1 TTTTTTAAAATAATTTTAAATTTTTTTATAT
8566748 TTTTTTAAAATAATTTTAAATTTTTTTATAT
1 TTTTTTAAAATAATTTTAAATTTTTTTATAT
8566779 TTT
1 TTT
8566782 CATCAATGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (31 bp):
TTTTTTAAAATAATTTTAAATTTTTTTATAT
Found at i:8567588 original size:7 final size:7
Alignment explanation
Indices: 8567576--8567600 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8567566 AGTCGATTGA
8567576 TATTTAG
1 TATTTAG
8567583 TATTTAG
1 TATTTAG
8567590 TATTTAG
1 TATTTAG
8567597 TATT
1 TATT
8567601 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:8568799 original size:29 final size:28
Alignment explanation
Indices: 8568774--8569241 Score: 353
Period size: 29 Copynumber: 17.2 Consensus size: 28
8568764 TTACTAACAA
*
8568774 TTAACTAACTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8568802 CTAATCTAATTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8568832 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* * * *
8568858 TT---TAATTTTACTAACAA--TTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
** **
8568880 -TAACTTAA-TTAAAAACCCTAACCCTAA-C
1 TTAAC-TAATTTAATTA--AAAACCCTAACC
8568908 ----CTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8568932 CTAATCTAATTTAATTAAAAACCCTAACC
1 TTAA-CTAATTTAATTAAAAACCCTAACC
* * *
8568961 CTAACCTAACTTAATTAAAAACCATAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
* *
8568991 TAAACTAACTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8569019 CTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8569049 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
**
8569075 TT---TAA-TT--TTACTAACCCTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
8569096 ----CTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8569120 CTAACCTAATTTAATTAAAAACCCTAACC
1 TTAA-CTAATTTAATTAAAAACCCTAACC
* *
8569149 CTAACCTAACTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
* * *
8569179 TAAACTAACTTAACTAAAAACCCTAACCC
1 TTAACTAATTTAATTAAAAACCCTAA-CC
*
8569208 TAAACTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
8569236 ATTAAC
1 -TTAAC
8569242 ACCATTTTTG
Statistics
Matches: 364, Mismatches: 42, Indels: 67
0.77 0.09 0.14
Matches are distributed among these distances:
20 14 0.04
21 6 0.02
22 2 0.01
23 34 0.09
24 9 0.02
25 9 0.02
26 4 0.01
28 13 0.04
29 257 0.71
30 16 0.04
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (28 bp):
TTAACTAATTTAATTAAAAACCCTAACC
Done.