Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 29 of 141
Found at i:8846267 original size:59 final size:58
Alignment explanation
Indices: 8846202--8846331 Score: 138
Period size: 59 Copynumber: 2.2 Consensus size: 58
8846192 TTTTACGAAA
* * * *
8846202 TTTATATGTCTTTAAATTTTGTATAA-TTTTCTTACGA-CTTTATAAAATTTTATAACTTT
1 TTTATATATCTTTAAA-TTT-TATAATTTTTCTTACAATCTTTATAAAATTTGAGAA-TTT
* * * * *
8846261 TTTATATTTCTCTATATTTTATAATTTTTTTTACAATTTTTATAAAATTTGAGAATTT
1 TTTATATATCTTTAAATTTTATAATTTTTCTTACAATCTTTATAAAATTTGAGAATTT
8846319 TTTATATATCTTT
1 TTTATATATCTTT
8846332 TACTATTTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
57 5 0.08
58 26 0.44
59 28 0.47
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (58 bp):
TTTATATATCTTTAAATTTTATAATTTTTCTTACAATCTTTATAAAATTTGAGAATTT
Found at i:8846373 original size:26 final size:29
Alignment explanation
Indices: 8846336--8846407 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 29
8846326 ATCTTTTACT
8846336 ATTTATATATATTTATAATTT-TTAAT-AA
1 ATTTATA-ATATTTATAATTTCTTAATAAA
* *
8846364 ATTT-TAATATTT-GAATTTCTTATTAAA
1 ATTTATAATATTTATAATTTCTTAATAAA
8846391 ATTTAATAATATTTATA
1 ATTT-ATAATATTTATA
8846408 GCTTTTATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
25 5 0.14
26 10 0.28
27 8 0.22
28 4 0.11
29 8 0.22
30 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
ATTTATAATATTTATAATTTCTTAATAAA
Found at i:8846563 original size:85 final size:87
Alignment explanation
Indices: 8846453--8846668 Score: 294
Period size: 85 Copynumber: 2.5 Consensus size: 87
8846443 GTAAAAGCAG
8846453 GGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTCCAAGTAC
1 GGGCTTAATT-CTTTTTTTGAAAAAGTTTGAGGG-CTTTTTGATGCATTTTGAAAGTCCAAGTAC
* * **
8846518 CTAATTGAGTGAA-AAAAAGTA-A
64 CCAAATGAGTGAATAAAAAAAACA
* * *
8846540 GGGCTTAATT-TTTTTTTGAAAAAGTTTGAGAGCTTTTTTGATGCATTTTGAAAGTTCAAGTGCC
1 GGGCTTAATTCTTTTTTTGAAAAAGTTTGAGGGC-TTTTTGATGCATTTTGAAAGTCCAAGTACC
8846604 CAAATGAGTGAATAAAAAAAACA
65 CAAATGAGTGAATAAAAAAAACA
*
8846627 GGGACTTAATTACTTCTTTTGAAAAAGTTTGAGGGCTTTTTG
1 GGG-CTTAATT-CTTTTTTTGAAAAAGTTTGAGGGCTTTTTG
8846669 CACCCTTAAG
Statistics
Matches: 114, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
84 1 0.01
85 59 0.52
86 6 0.05
87 14 0.12
88 7 0.06
89 6 0.05
90 21 0.18
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (87 bp):
GGGCTTAATTCTTTTTTTGAAAAAGTTTGAGGGCTTTTTGATGCATTTTGAAAGTCCAAGTACCC
AAATGAGTGAATAAAAAAAACA
Found at i:8852227 original size:6 final size:6
Alignment explanation
Indices: 8852216--8852250 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
8852206 AGTTTTCTCT
8852216 AAAATG AAAATG AAAATG AAAATGG ATAAATG AAA
1 AAAATG AAAATG AAAATG AAAAT-G A-AAATG AAA
8852251 TCATAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.70
7 4 0.15
8 4 0.15
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:8856926 original size:42 final size:43
Alignment explanation
Indices: 8856876--8856984 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 43
8856866 TCTTGGATAA
*
8856876 GGTCTTACACGTAATCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCATATATCGATGCCAACGTCCCAGACAT
* *
8856918 GGTCTTACACGTAAATC-TCAAATCGATGCCAACGTCCCAGACGT
1 GGTCTTACACGT-AATCAT-ATATCGATGCCAACGTCCCAGACAT
*
8856962 GCTCTTACACG-ATATCATATATC
1 GGTCTTACACGTA-ATCATATATC
8856985 AGAATCCTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
42 14 0.25
43 13 0.23
44 30 0.53
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATCATATATCGATGCCAACGTCCCAGACAT
Found at i:8856955 original size:44 final size:42
Alignment explanation
Indices: 8856814--8856972 Score: 124
Period size: 44 Copynumber: 3.7 Consensus size: 42
8856804 AGCTCGTACA
* * * * *
8856814 ATGCCAACATCCCAGACGTGGTCTTACATGTAACCAAATAACA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAT-ACG
* *** * * *
8856857 ATGTC-ACTGTCTTGGATAAGGTCTTACACGTAATCATATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATACG
*
8856899 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AA--TCAAATACG
* *
8856943 ATGCCAACGTCCCAGACGTGCTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
8856973 ATATCATATA
Statistics
Matches: 88, Mismatches: 23, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
42 26 0.30
43 28 0.32
44 29 0.33
45 5 0.06
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATACG
Found at i:8861123 original size:16 final size:18
Alignment explanation
Indices: 8861102--8861137 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8861092 TTTTTTATGT
8861102 TATAAAT-T-ACATAATA
1 TATAAATATAACATAATA
8861118 TATAAATATAACATAATA
1 TATAAATATAACATAATA
8861136 TA
1 TA
8861138 AGGCATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (18 bp):
TATAAATATAACATAATA
Found at i:8862131 original size:97 final size:97
Alignment explanation
Indices: 8861965--8862159 Score: 381
Period size: 97 Copynumber: 2.0 Consensus size: 97
8861955 AGAAGATCGA
8861965 ACCCAAATATTATATGAAAAACTCCTCTGAAAAGAATAAAAACTACAGGCAAAGAAAACTTTACT
1 ACCCAAATATTATATGAAAAACTCCTCTGAAAAGAATAAAAACTACAGGCAAAGAAAACTTTACT
8862030 AATTCGGCAAACCAACGAAGAGTACAAGATGG
66 AATTCGGCAAACCAACGAAGAGTACAAGATGG
*
8862062 ACCCAAATATTATATGAAAAACTCCTCTGAAAAGAATAAAAACTACAGGCAAAGAAAATTTTACT
1 ACCCAAATATTATATGAAAAACTCCTCTGAAAAGAATAAAAACTACAGGCAAAGAAAACTTTACT
8862127 AATTCGGCAAACCAACGAAGAGTACAAGATGG
66 AATTCGGCAAACCAACGAAGAGTACAAGATGG
8862159 A
1 A
8862160 GATAATAAAC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.49, C:0.18, G:0.14, T:0.19
Consensus pattern (97 bp):
ACCCAAATATTATATGAAAAACTCCTCTGAAAAGAATAAAAACTACAGGCAAAGAAAACTTTACT
AATTCGGCAAACCAACGAAGAGTACAAGATGG
Found at i:8864984 original size:23 final size:23
Alignment explanation
Indices: 8864958--8865004 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8864948 GCTAGATTTT
*
8864958 TCCTAAGTACTATCACTAAATAA
1 TCCTAAATACTATCACTAAATAA
* *
8864981 TCCTAAATATTATCCCTAAATAA
1 TCCTAAATACTATCACTAAATAA
8865004 T
1 T
8865005 TCAAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (23 bp):
TCCTAAATACTATCACTAAATAA
Found at i:8865011 original size:23 final size:23
Alignment explanation
Indices: 8864968--8865011 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
8864958 TCCTAAGTAC
*
8864968 TATCACTAAATAATCCTAAATAT
1 TATCACTAAATAATCCAAAATAT
* *
8864991 TATCCCTAAATAATTCAAAAT
1 TATCACTAAATAATCCAAAAT
8865012 TTAAAAATCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (23 bp):
TATCACTAAATAATCCAAAATAT
Found at i:8872119 original size:22 final size:22
Alignment explanation
Indices: 8872075--8872151 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 22
8872065 TGATTAAGAT
* *
8872075 AATAAAATAAGGAAATA-CAAAA
1 AATAAAATAA-AAAATAGTAAAA
*
8872097 AATAAAATAAAAAATAGTCAAA
1 AATAAAATAAAAAATAGTAAAA
* **
8872119 AATGAAAA-AATAAATTTTAAAA
1 AAT-AAAATAAAAAATAGTAAAA
8872141 AATAAAATAAA
1 AATAAAATAAA
8872152 TGGATAAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
21 9 0.20
22 31 0.70
23 4 0.09
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (22 bp):
AATAAAATAAAAAATAGTAAAA
Found at i:8873025 original size:13 final size:13
Alignment explanation
Indices: 8873007--8873048 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
8872997 AGATTTTTCT
8873007 TAAATATTATCAC
1 TAAATATTATCAC
*
8873020 TAAATA--ATC-G
1 TAAATATTATCAC
8873030 TAAATATTATCAC
1 TAAATATTATCAC
8873043 TAAATA
1 TAAATA
8873049 ATTCAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 6 0.25
11 3 0.12
12 3 0.12
13 12 0.50
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:8873037 original size:23 final size:23
Alignment explanation
Indices: 8873007--8873050 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
8872997 AGATTTTTCT
8873007 TAAATATTATCACTAAATAATCG
1 TAAATATTATCACTAAATAATCG
8873030 TAAATATTATCACTAAATAAT
1 TAAATATTATCACTAAATAAT
8873051 TCAAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.36
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATCG
Found at i:8880843 original size:21 final size:22
Alignment explanation
Indices: 8880803--8880845 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8880793 CCCTAAAAAT
* *
8880803 CCTAAAAACCCTAAACCCTAAC
1 CCTAAAAACCCAAAAACCTAAC
8880825 CCTAAAAA-CCAAAAACCTAAC
1 CCTAAAAACCCAAAAACCTAAC
8880846 ATGGGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.37, G:0.00, T:0.12
Consensus pattern (22 bp):
CCTAAAAACCCAAAAACCTAAC
Found at i:8880940 original size:40 final size:39
Alignment explanation
Indices: 8880881--8880961 Score: 108
Period size: 40 Copynumber: 2.1 Consensus size: 39
8880871 CCCAGGGGCG
* * * *
8880881 TGCTACGTGGCAACAAATCGCGTCCACGTCAGCGCGCTT
1 TGCTACGTGGCAACAAATCGCGCCCACATAAGCGCGATT
*
8880920 TGCTGACGTGGTAACAAATCGCGCCCACATAAGCGCGATT
1 TGCT-ACGTGGCAACAAATCGCGCCCACATAAGCGCGATT
8880960 TG
1 TG
8880962 TGTCCATGTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 4 0.11
40 32 0.89
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
TGCTACGTGGCAACAAATCGCGCCCACATAAGCGCGATT
Found at i:8881527 original size:18 final size:18
Alignment explanation
Indices: 8881482--8881519 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8881472 AATAAATAAT
8881482 ACATGAAATTAAAATATA
1 ACATGAAATTAAAATATA
8881500 ACATGAAATTAAAATATA
1 ACATGAAATTAAAATATA
8881518 AC
1 AC
8881520 TCTTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (18 bp):
ACATGAAATTAAAATATA
Found at i:8901553 original size:23 final size:24
Alignment explanation
Indices: 8901527--8901575 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8901517 TTAAAATAGT
8901527 TTCTAAAAG-AAACTC-AAGAGCAA
1 TTCTAAAAGAAAACTCAAAGAG-AA
**
8901550 TTCTTGAAGAAAACTCAAAGAGAA
1 TTCTAAAAGAAAACTCAAAGAGAA
8901574 TT
1 TT
8901576 ATTATTAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 7 0.32
24 10 0.45
25 5 0.23
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.22
Consensus pattern (24 bp):
TTCTAAAAGAAAACTCAAAGAGAA
Found at i:8905644 original size:31 final size:35
Alignment explanation
Indices: 8905606--8905682 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
8905596 AATATTAAGC
*
8905606 TTAATTTAATACTTA-TTT-TA-AT-AGTATATTA
1 TTAATTTAATACTTATTTTGTATATAAATATATTA
** *
8905637 TTAATTTAATGTTTATTTTGTATATAAATATTTTA
1 TTAATTTAATACTTATTTTGTATATAAATATATTA
8905672 TTAATTTAATA
1 TTAATTTAATA
8905683 TTAAAGTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 13 0.35
32 3 0.08
33 2 0.05
34 2 0.05
35 17 0.46
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (35 bp):
TTAATTTAATACTTATTTTGTATATAAATATATTA
Found at i:8909400 original size:24 final size:24
Alignment explanation
Indices: 8909368--8909414 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8909358 TCTCATTTTT
8909368 TCGTGTTTACAATCCCGGCAAACC
1 TCGTGTTTACAATCCCGGCAAACC
* *
8909392 TCGTGTTTACAGTCCCGTCAAAC
1 TCGTGTTTACAATCCCGGCAAAC
8909415 TATATTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (24 bp):
TCGTGTTTACAATCCCGGCAAACC
Found at i:8915311 original size:50 final size:51
Alignment explanation
Indices: 8915148--8915396 Score: 238
Period size: 50 Copynumber: 4.8 Consensus size: 51
8915138 TTTCTTGTAC
* * * * * * *
8915148 TGCCAATGCCATATCCCAGATATGGTCTTACATCGGAGT-TCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTCTCTCATCTCGG
* *** *
8915198 TGACC-ATGCCATGTCCCAGACATGGTCTTATGGGGGGA-TCTCTCATCTCTG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTA-CATGGGACTCTCTCATCTCGG
*
8915249 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACT-TCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTCTCTCATCTCGG
* * * *
8915299 TGCCAACGCCATGTCCCAGACATAGCCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CTCTC-TCATCTC---GG
*
8915355 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-TCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTCTCT
8915397 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
50 75 0.45
51 42 0.25
52 2 0.01
53 7 0.04
54 4 0.02
56 35 0.21
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTCTCTCATCTCGG
Found at i:8928336 original size:26 final size:22
Alignment explanation
Indices: 8928286--8928329 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8928276 ATGATATATG
8928286 TATGCATACTAGAGAACATGAT
1 TATGCATACTAGAGAACATGAT
8928308 TATGCATACTAGAGAACATGAT
1 TATGCATACTAGAGAACATGAT
8928330 GTGTTATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (22 bp):
TATGCATACTAGAGAACATGAT
Found at i:8932052 original size:28 final size:26
Alignment explanation
Indices: 8931992--8932052 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
8931982 ATTTAGAGTA
*
8931992 TATTTATATTAAACTACATTAAAATC
1 TATTTATATTAAAATACATTAAAATC
* * *
8932018 AAATTATATTAAAATAACAATTAAAATT
1 TATTTATATTAAAAT-AC-ATTAAAATC
8932046 TATTTAT
1 TATTTAT
8932053 GATAATGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
26 12 0.44
27 2 0.07
28 13 0.48
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.43
Consensus pattern (26 bp):
TATTTATATTAAAATACATTAAAATC
Found at i:8935645 original size:41 final size:41
Alignment explanation
Indices: 8935543--8935651 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
8935533 ACCGGCTTTT
* * * * * *
8935543 AGCCTGCTAGACCTATAGTCCGAAATGTATCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
8935584 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
8935625 AGCCTGCTAGACGTAAAGTCTGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTA
8935652 CATTCGATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
Found at i:8944513 original size:41 final size:41
Alignment explanation
Indices: 8944439--8944547 Score: 146
Period size: 41 Copynumber: 2.7 Consensus size: 41
8944429 NNNNGCTTTT
* * * * * *
8944439 AGCCTGCTAGACCTATAGTCCGAAATGTATCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
8944480 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
*
8944521 AGCCTGCTAGACGTAAAGTCTGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTA
8944548 CATTCGATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAATTATATCACCGGCATCA
Found at i:8950636 original size:26 final size:26
Alignment explanation
Indices: 8950597--8950657 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
8950587 GATGTTACAC
8950597 AAACTCAAGAGTCCTCTGAACCACTT
1 AAACTCAAGAGTCCTCTGAACCACTT
* * * *
8950623 AAACTCAGGGGTCCTTTGACCCACTT
1 AAACTCAAGAGTCCTCTGAACCACTT
8950649 AAACTCAAG
1 AAACTCAAG
8950658 CTCACTAGGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
AAACTCAAGAGTCCTCTGAACCACTT
Found at i:8954770 original size:17 final size:18
Alignment explanation
Indices: 8954736--8954774 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
8954726 ATTTTATATT
* *
8954736 TTATTTTTATGAATTTAA
1 TTATTTTAATGAAATTAA
8954754 TTATTTTAAT-AAATTAA
1 TTATTTTAATGAAATTAA
8954771 TTAT
1 TTAT
8954775 AGGAATCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATTTTAATGAAATTAA
Found at i:8954908 original size:50 final size:52
Alignment explanation
Indices: 8954833--8954937 Score: 169
Period size: 50 Copynumber: 2.1 Consensus size: 52
8954823 CACATGTTTA
*
8954833 TTTCATACTAACACTTATTCTTTTATCAATGAATTATA-TT-TGTATATAAT
1 TTTCATACTAACACTTATTCTTTTATCAATAAATTATACTTGTGTATATAAT
* *
8954883 TTTCATACTAACGCTTATTCTTTTATCAATAAATTATACTTGTGTATTTAAT
1 TTTCATACTAACACTTATTCTTTTATCAATAAATTATACTTGTGTATATAAT
8954935 TTT
1 TTT
8954938 TTGTATTTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
50 36 0.72
51 2 0.04
52 12 0.24
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.51
Consensus pattern (52 bp):
TTTCATACTAACACTTATTCTTTTATCAATAAATTATACTTGTGTATATAAT
Found at i:8962006 original size:31 final size:31
Alignment explanation
Indices: 8961971--8962036 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
8961961 ACAATCTAGT
8961971 AACTTAAATAAAAACTTTTGAATAGTTCAAC
1 AACTTAAATAAAAACTTTTGAATAGTTCAAC
* ** * *
8962002 AACTTAAATGAAATTTTTTGAATTGTTCAAT
1 AACTTAAATAAAAACTTTTGAATAGTTCAAC
8962033 AACT
1 AACT
8962037 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.38
Consensus pattern (31 bp):
AACTTAAATAAAAACTTTTGAATAGTTCAAC
Found at i:8970754 original size:17 final size:17
Alignment explanation
Indices: 8970732--8970765 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8970722 AATTTAATTT
*
8970732 TAATTAATTTTTTAAAA
1 TAATTAAATTTTTAAAA
8970749 TAATTAAATTTTTAAAA
1 TAATTAAATTTTTAAAA
8970766 ATAAACGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATTAAATTTTTAAAA
Found at i:8970758 original size:18 final size:17
Alignment explanation
Indices: 8970732--8970769 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
8970722 AATTTAATTT
*
8970732 TAATTAATTTTTTAAAA
1 TAATTAATTTTTAAAAA
8970749 TAATTAAATTTTTAAAAA
1 TAATT-AATTTTTAAAAA
8970767 TAA
1 TAA
8970770 ACGAACATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATTAATTTTTAAAAA
Found at i:8977102 original size:26 final size:26
Alignment explanation
Indices: 8977073--8977127 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
8977063 GTTATATGGT
*
8977073 TCTTTGTGAGCTT-CTCGATTAAAGGC
1 TCTTTGTGAACTTCCT-GATTAAAGGC
*
8977099 TCTTTGTGAACTTCCTGATTAATGGC
1 TCTTTGTGAACTTCCTGATTAAAGGC
8977125 TCT
1 TCT
8977128 CCAGAGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (26 bp):
TCTTTGTGAACTTCCTGATTAAAGGC
Found at i:8977207 original size:25 final size:25
Alignment explanation
Indices: 8977080--8977208 Score: 70
Period size: 25 Copynumber: 5.2 Consensus size: 25
8977070 GGTTCTTTGT
* * **
8977080 GAGCTTCTCGATTAAAGGCTCTTTGT
1 GAGCTTCCCGATTAATGGCTC-TTCA
* * *
8977106 GAACTTCCTGATTAATGGCTCTCCA
1 GAGCTTCCCGATTAATGGCTCTTCA
8977131 GAGCTTCCCGA-T-ATGGCTCACTT--
1 GAGCTTCCCGATTAATGGCT--CTTCA
* * * * *
8977154 GAACTTCCCCA-TATATGGCTATCCG
1 GAGCTTCCCGATTA-ATGGCTCTTCA
*
8977179 GAGCTTCTCGATTAATGGCTCTTCA
1 GAGCTTCCCGATTAATGGCTCTTCA
8977204 GAGCT
1 GAGCT
8977209 ATTCGTTATT
Statistics
Matches: 76, Mismatches: 20, Indels: 15
0.68 0.18 0.14
Matches are distributed among these distances:
23 17 0.22
24 1 0.01
25 39 0.51
26 19 0.25
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATTAATGGCTCTTCA
Found at i:8977319 original size:25 final size:25
Alignment explanation
Indices: 8977213--8977323 Score: 82
Period size: 25 Copynumber: 4.5 Consensus size: 25
8977203 AGAGCTATTC
8977213 GTTAT-TGGCTCACATGAGCTTCCT
1 GTTATATGGCTCACATGAGCTTCCT
** ** *
8977237 AAT-TATGGCTCTTATGAGCTTCTT
1 GTTATATGGCTCACATGAGCTTCCT
* * ** * *
8977261 GTTATATAGCCCGGATAAGCTTCCC
1 GTTATATGGCTCACATGAGCTTCCT
* **
8977286 ATTCCATGGCTCACATGAGCTTCCT
1 GTTATATGGCTCACATGAGCTTCCT
8977311 GTTATATGGCTCA
1 GTTATATGGCTCA
8977324 AGGGAGGGCT
Statistics
Matches: 59, Mismatches: 26, Indels: 3
0.67 0.30 0.03
Matches are distributed among these distances:
23 1 0.02
24 18 0.31
25 40 0.68
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (25 bp):
GTTATATGGCTCACATGAGCTTCCT
Found at i:8981625 original size:24 final size:23
Alignment explanation
Indices: 8981598--8981674 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
8981588 TTTTTATATT
*
8981598 ATAAAACATT-AATTAAATTATAAA
1 ATAAAACATTAAACTAAATTAT--A
*
8981622 ATAAAA-GTTAAACTAAATTATA
1 ATAAAACATTAAACTAAATTATA
* * * *
8981644 ATAAAACACTAACCAAAACTATA
1 ATAAAACATTAAACTAAATTATA
8981667 ATAAAACA
1 ATAAAACA
8981675 AAAAGAAAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
22 7 0.16
23 21 0.48
24 16 0.36
ACGTcount: A:0.62, C:0.10, G:0.01, T:0.26
Consensus pattern (23 bp):
ATAAAACATTAAACTAAATTATA
Found at i:8984135 original size:22 final size:22
Alignment explanation
Indices: 8984066--8984137 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 22
8984056 ACATGGTTTG
8984066 CTCACACGG-CTATGTGACCTAT
1 CTCACACGGAC-ATGTGACCTAT
* *
8984088 C-CACAC-GACCATCTGACCCA-
1 CTCACACGGA-CATGTGACCTAT
*
8984108 CTCACACGGACATGTGGCCTAT
1 CTCACACGGACATGTGACCTAT
8984130 CTCACACG
1 CTCACACG
8984138 AGCACGACCT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 2 0.05
21 26 0.65
22 12 0.30
ACGTcount: A:0.25, C:0.39, G:0.17, T:0.19
Consensus pattern (22 bp):
CTCACACGGACATGTGACCTAT
Found at i:8987794 original size:57 final size:57
Alignment explanation
Indices: 8987730--8987842 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
8987720 CACCATGGCA
* *
8987730 GCATGGTACAAGGTAAAAGGTATATAGAGTAAAACCATGGATGAAAGACGTTATGGT
1 GCATGGTACAAGGTAAAAGGTATACAGAGTAAAACCATGGATGAAAGACGCTATGGT
* * * * *
8987787 GCATGGTATAAGGTATAAGGTATACGGTGTAAGACCATGGATGAAAGACGCTATGG
1 GCATGGTACAAGGTAAAAGGTATACAGAGTAAAACCATGGATGAAAGACGCTATGG
8987843 CGGTCAGATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.23
Consensus pattern (57 bp):
GCATGGTACAAGGTAAAAGGTATACAGAGTAAAACCATGGATGAAAGACGCTATGGT
Found at i:8987952 original size:33 final size:33
Alignment explanation
Indices: 8987896--8988020 Score: 144
Period size: 33 Copynumber: 3.8 Consensus size: 33
8987886 GCATCCTCAG
* *
8987896 AGATAGTCTGCTGAGACAGTAAACACAGAACAA
1 AGATAGTCTGCTGGGACAGTAAACACAAAACAA
* * *
8987929 AGATAGTCCGTTGGGACAATAAACACAAAACAA
1 AGATAGTCTGCTGGGACAGTAAACACAAAACAA
* * *
8987962 AGATAGTCTGCTGGGACAGTAAGCACAAAATAG
1 AGATAGTCTGCTGGGACAGTAAACACAAAACAA
* *
8987995 AGATAGCCTGTCT-AGACAGTAAACAC
1 AGATAGTCTG-CTGGGACAGTAAACAC
8988021 GAGGTAAGTC
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
33 75 0.97
34 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17
Consensus pattern (33 bp):
AGATAGTCTGCTGGGACAGTAAACACAAAACAA
Found at i:8988064 original size:28 final size:28
Alignment explanation
Indices: 8988009--8988066 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
8987999 AGCCTGTCTA
*
8988009 GACAGTAAACACGAGGTAAGTCTGCTAG
1 GACAGTAAACACGAGGTAAGTCTACTAG
*
8988037 GACAGTAAACATGAGGTAAGT-TCACTAG
1 GACAGTAAACACGAGGTAAGTCT-ACTAG
8988065 GA
1 GA
8988067 TAATAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (28 bp):
GACAGTAAACACGAGGTAAGTCTACTAG
Found at i:8988073 original size:28 final size:28
Alignment explanation
Indices: 8988009--8988073 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
8987999 AGCCTGTCTA
* *
8988009 GACAGTAAACACGAGGTAAGTCTGCTAG
1 GACAATAAACACGAGGTAAGTCTACTAG
* *
8988037 GACAGTAAACATGAGGTAAGT-TCACTAG
1 GACAATAAACACGAGGTAAGTCT-ACTAG
*
8988065 GATAATAAA
1 GACAATAAA
8988074 TATGGGGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.20
Consensus pattern (28 bp):
GACAATAAACACGAGGTAAGTCTACTAG
Found at i:9002642 original size:26 final size:27
Alignment explanation
Indices: 9002606--9002656 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
9002596 GGACACTAAC
9002606 AAAGGGTGGAGAAGAAAAGA-AAAGAG
1 AAAGGGTGGAGAAGAAAAGATAAAGAG
*
9002632 AAAGGGTGGAGGAGAAAAGATAAAG
1 AAAGGGTGGAGAAGAAAAGATAAAG
9002657 TGTGGTGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (27 bp):
AAAGGGTGGAGAAGAAAAGATAAAGAG
Found at i:9008998 original size:27 final size:25
Alignment explanation
Indices: 9008940--9008991 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
9008930 ATATATATAT
9008940 ATAATTTAAAAATATATAAAAATAA
1 ATAATTTAAAAATATATAAAAATAA
*
9008965 ATAATTTCAAAAA-ATATAATAATAA
1 ATAATTT-AAAAATATATAAAAATAA
9008990 AT
1 AT
9008992 TTCATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATTTAAAAATATATAAAAATAA
Found at i:9019967 original size:18 final size:17
Alignment explanation
Indices: 9019937--9019975 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
9019927 GCAAATGGAT
* *
9019937 AAAAATAAAAGAAAATA
1 AAAAAGAAAAGAAAAGA
9019954 AAAAAGAAATAGAAAAGA
1 AAAAAGAAA-AGAAAAGA
9019972 AAAA
1 AAAA
9019976 TGCAAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (17 bp):
AAAAAGAAAAGAAAAGA
Found at i:9022140 original size:26 final size:25
Alignment explanation
Indices: 9022104--9022177 Score: 96
Period size: 25 Copynumber: 2.9 Consensus size: 25
9022094 ATATATTTTC
9022104 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACC-GGGGTAAAATCA
* *
9022130 TCAAAATTTTACCGGGTTAAAATCG
1 TCAAAATTTTACCGGGGTAAAATCA
*
9022155 TCAAAATTTTTA-CTGGGTAAAAT
1 TCAAAA-TTTTACCGGGGTAAAAT
9022178 AGGGATGAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 25 0.58
26 18 0.42
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (25 bp):
TCAAAATTTTACCGGGGTAAAATCA
Found at i:9022158 original size:25 final size:24
Alignment explanation
Indices: 9022104--9022177 Score: 94
Period size: 26 Copynumber: 2.9 Consensus size: 24
9022094 ATATATTTTC
9022104 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACC--GGGTAAAATCA
*
9022130 TCAAAATTTTACCGGGTTAAAATCG
1 TCAAAATTTTACCGGG-TAAAATCA
*
9022155 TCAAAATTTTTACTGGGTAAAAT
1 TCAAAA-TTTTACCGGGTAAAAT
9022178 AGGGATGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 3 0.07
25 19 0.43
26 22 0.50
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (24 bp):
TCAAAATTTTACCGGGTAAAATCA
Found at i:9037828 original size:35 final size:35
Alignment explanation
Indices: 9037768--9037888 Score: 125
Period size: 35 Copynumber: 3.5 Consensus size: 35
9037758 CCTCTTTTGA
* * * *
9037768 GGTGTTGCCCCGAAAGACCTGTATACCGTTTGCAC
1 GGTGTTGCCCCGAAGGACCTATATACCATTTACAC
* * *
9037803 GGTGTTGCCTCGAAGGACTTATATACCATTTATAC
1 GGTGTTGCCCCGAAGGACCTATATACCATTTACAC
** * * * *
9037838 GGTGTCACCTCAAATGACCTATATGCCATTTACAC
1 GGTGTTGCCCCGAAGGACCTATATACCATTTACAC
9037873 GGTGTTGCCCCGAAGG
1 GGTGTTGCCCCGAAGG
9037889 GCCAGTCGAC
Statistics
Matches: 67, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (35 bp):
GGTGTTGCCCCGAAGGACCTATATACCATTTACAC
Found at i:9049175 original size:41 final size:41
Alignment explanation
Indices: 9049105--9049256 Score: 191
Period size: 41 Copynumber: 3.7 Consensus size: 41
9049095 ATCGGAGTGT
* * * *
9049105 AAACAGGGGCACGTAAGTACTATTTAGGGGTACTGAAGTAC
1 AAACAGGGGCACATATGTGCAATTTAGGGGTACTGAAGTAC
* * *
9049146 AAACAGGGGCATAAATGTGCAATTCAGGGGTACTGAAGTAC
1 AAACAGGGGCACATATGTGCAATTTAGGGGTACTGAAGTAC
9049187 AAACAGGGGCACATATGTGCAATTTAGGGAG-A-TCGAAGTAC
1 AAACAGGGGCACATATGTGCAATTTAGGG-GTACT-GAAGTAC
* *
9049228 AAATAGGGGCACATATGTGTAATTTAGGG
1 AAACAGGGGCACATATGTGCAATTTAGGG
9049257 AATAATTAAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
40 1 0.01
41 95 0.98
42 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.22
Consensus pattern (41 bp):
AAACAGGGGCACATATGTGCAATTTAGGGGTACTGAAGTAC
Found at i:9049195 original size:20 final size:20
Alignment explanation
Indices: 9049130--9049195 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
9049120 AGTACTATTT
9049130 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * * *
9049150 AGGGGCA-TAAATGTGCAATTC
1 AGGGGTACTGAA-GTACAA-AC
9049171 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
9049191 AGGGG
1 AGGGG
9049196 CACATATGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 3 0.09
20 17 0.49
21 12 0.34
22 3 0.09
ACGTcount: A:0.36, C:0.14, G:0.33, T:0.17
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:9052111 original size:981 final size:981
Alignment explanation
Indices: 9050210--9052172 Score: 3926
Period size: 981 Copynumber: 2.0 Consensus size: 981
9050200 ACCTTTTACG
9050210 ATTTAGTCCTTTTCACGAAATTAAGCATGCAAACGTCAAAATTTCTTAACGAAATTTTTATACAA
1 ATTTAGTCCTTTTCACGAAATTAAGCATGCAAACGTCAAAATTTCTTAACGAAATTTTTATACAA
9050275 CTCTACTAACATACCATAGACATTAAAATAACAAAAAAAATAGTTTACTCATCAGATTTGTGGTC
66 CTCTACTAACATACCATAGACATTAAAATAACAAAAAAAATAGTTTACTCATCAGATTTGTGGTC
9050340 TTGAAACTACTATTCTGATTTCACTAAAAACGAGTTGTTACAATTCCCTCCGTACTTCACATATG
131 TTGAAACTACTATTCTGATTTCACTAAAAACGAGTTGTTACAATTCCCTCCGTACTTCACATATG
9050405 ATATAATCATGCATTTCACGCATAACAATCCAAATAATATTACCTTAATGTGTACTGCACACTAT
196 ATATAATCATGCATTTCACGCATAACAATCCAAATAATATTACCTTAATGTGTACTGCACACTAT
9050470 AATACATCGATACATAGCTCTATCATACAAAACATACTTGCAGACTTTCATGAATTCAGATTACC
261 AATACATCGATACATAGCTCTATCATACAAAACATACTTGCAGACTTTCATGAATTCAGATTACC
9050535 TTAAACACGCATGTCGTGCTTATCCACCAAAATCATATACTACCATAGGTTTCAAACAAAATTCA
326 TTAAACACGCATGTCGTGCTTATCCACCAAAATCATATACTACCATAGGTTTCAAACAAAATTCA
9050600 GAGCAGACATAAACACAAATCACTCAAGCAACACTCATCCTTTAATCATCCAAGAGTAGAGTACA
391 GAGCAGACATAAACACAAATCACTCAAGCAACACTCATCCTTTAATCATCCAAGAGTAGAGTACA
9050665 GTAACTCACCTTAAATCCTTCATCCTTGTCAGCTTAGCTTTTCCAATTTCCAGAGCCTCTATCGT
456 GTAACTCACCTTAAATCCTTCATCCTTGTCAGCTTAGCTTTTCCAATTTCCAGAGCCTCTATCGT
9050730 TTTTGGAAATTAAACACGACAATTATATATTAGTTAAATCGAAGGAATCAACCCTTAAACCTGAA
521 TTTTGGAAATTAAACACGACAATTATATATTAGTTAAATCGAAGGAATCAACCCTTAAACCTGAA
9050795 ATCCATTATACAAAAATTTATTAGGAATCCATACTCTCACTCTTCCTCTAATCTATGAGCACAAA
586 ATCCATTATACAAAAATTTATTAGGAATCCATACTCTCACTCTTCCTCTAATCTATGAGCACAAA
9050860 AAGATAAGAAAGCTTACCAGTTTCTCAAATTCTCTACTTCCAGGCTTCAAATCTCACAACTACTG
651 AAGATAAGAAAGCTTACCAGTTTCTCAAATTCTCTACTTCCAGGCTTCAAATCTCACAACTACTG
9050925 CCTCATGCAAAGCTCTCCTAAATTTTCCTCTTATTCGGAATAATCGAAGAAGACGATGCAATTGA
716 CCTCATGCAAAGCTCTCCTAAATTTTCCTCTTATTCGGAATAATCGAAGAAGACGATGCAATTGA
9050990 GAAGAAAATTTTCCAACAGAATTGAGAAGAATTCCTTTAGTAGGAATATCCCTTCTCACCTAAAT
781 GAAGAAAATTTTCCAACAGAATTGAGAAGAATTCCTTTAGTAGGAATATCCCTTCTCACCTAAAT
9051055 ATATAGCTCCTCTTGCACGGTCTCCAAATCTCAATTAGCCATCCATCGACAATCATTGTGTCTCC
846 ATATAGCTCCTCTTGCACGGTCTCCAAATCTCAATTAGCCATCCATCGACAATCATTGTGTCTCC
9051120 CACTATGGAACCAGTCGGTTCCATCTTAACCAAACCAAAATTGAAACTCCAACTAATTGCCTAAT
911 CACTATGGAACCAGTCGGTTCCATCTTAACCAAACCAAAATTGAAACTCCAACTAATTGCCTAAT
9051185 AGTCAC
976 AGTCAC
9051191 ATTTAGTCCTTTTCACGAAATTAAGCATGCAAACGTCAAAATTTCTTAACGAAATTTTTATACAA
1 ATTTAGTCCTTTTCACGAAATTAAGCATGCAAACGTCAAAATTTCTTAACGAAATTTTTATACAA
9051256 CTCTACTAACATACCATAGACATTAAAATAACAAAAAAAATAGTTTACTCATCAGATTTGTGGTC
66 CTCTACTAACATACCATAGACATTAAAATAACAAAAAAAATAGTTTACTCATCAGATTTGTGGTC
9051321 TTGAAACTACTATTCTGATTTCACTAAAAACGAGTTGTTACAATTCCCTCCGTACTTCACATATG
131 TTGAAACTACTATTCTGATTTCACTAAAAACGAGTTGTTACAATTCCCTCCGTACTTCACATATG
9051386 ATATAATCATGCATTTCACGCATAACAATCCAAATAATATTACCTTAATGTGTACTGCACACTAT
196 ATATAATCATGCATTTCACGCATAACAATCCAAATAATATTACCTTAATGTGTACTGCACACTAT
9051451 AATACATCGATACATAGCTCTATCATACAAAACATACTTGCAGACTTTCATGAATTCAGATTACC
261 AATACATCGATACATAGCTCTATCATACAAAACATACTTGCAGACTTTCATGAATTCAGATTACC
9051516 TTAAACACGCATGTCGTGCTTATCCACCAAAATCATATACTACCATAGGTTTCAAACAAAATTCA
326 TTAAACACGCATGTCGTGCTTATCCACCAAAATCATATACTACCATAGGTTTCAAACAAAATTCA
9051581 GAGCAGACATAAACACAAATCACTCAAGCAACACTCATCCTTTAATCATCCAAGAGTAGAGTACA
391 GAGCAGACATAAACACAAATCACTCAAGCAACACTCATCCTTTAATCATCCAAGAGTAGAGTACA
9051646 GTAACTCACCTTAAATCCTTCATCCTTGTCAGCTTAGCTTTTCCAATTTCCAGAGCCTCTATCGT
456 GTAACTCACCTTAAATCCTTCATCCTTGTCAGCTTAGCTTTTCCAATTTCCAGAGCCTCTATCGT
9051711 TTTTGGAAATTAAACACGACAATTATATATTAGTTAAATCGAAGGAATCAACCCTTAAACCTGAA
521 TTTTGGAAATTAAACACGACAATTATATATTAGTTAAATCGAAGGAATCAACCCTTAAACCTGAA
9051776 ATCCATTATACAAAAATTTATTAGGAATCCATACTCTCACTCTTCCTCTAATCTATGAGCACAAA
586 ATCCATTATACAAAAATTTATTAGGAATCCATACTCTCACTCTTCCTCTAATCTATGAGCACAAA
9051841 AAGATAAGAAAGCTTACCAGTTTCTCAAATTCTCTACTTCCAGGCTTCAAATCTCACAACTACTG
651 AAGATAAGAAAGCTTACCAGTTTCTCAAATTCTCTACTTCCAGGCTTCAAATCTCACAACTACTG
9051906 CCTCATGCAAAGCTCTCCTAAATTTTCCTCTTATTCGGAATAATCGAAGAAGACGATGCAATTGA
716 CCTCATGCAAAGCTCTCCTAAATTTTCCTCTTATTCGGAATAATCGAAGAAGACGATGCAATTGA
9051971 GAAGAAAATTTTCCAACAGAATTGAGAAGAATTCCTTTAGTAGGAATATCCCTTCTCACCTAAAT
781 GAAGAAAATTTTCCAACAGAATTGAGAAGAATTCCTTTAGTAGGAATATCCCTTCTCACCTAAAT
9052036 ATATAGCTCCTCTTGCACGGTCTCCAAATCTCAATTAGCCATCCATCGACAATCATTGTGTCTCC
846 ATATAGCTCCTCTTGCACGGTCTCCAAATCTCAATTAGCCATCCATCGACAATCATTGTGTCTCC
9052101 CACTATGGAACCAGTCGGTTCCATCTTAACCAAACCAAAATTGAAACTCCAACTAATTGCCTAAT
911 CACTATGGAACCAGTCGGTTCCATCTTAACCAAACCAAAATTGAAACTCCAACTAATTGCCTAAT
9052166 AGTCAC
976 AGTCAC
9052172 A
1 A
9052173 AAATTTCAAA
Statistics
Matches: 982, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
981 982 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.30
Consensus pattern (981 bp):
ATTTAGTCCTTTTCACGAAATTAAGCATGCAAACGTCAAAATTTCTTAACGAAATTTTTATACAA
CTCTACTAACATACCATAGACATTAAAATAACAAAAAAAATAGTTTACTCATCAGATTTGTGGTC
TTGAAACTACTATTCTGATTTCACTAAAAACGAGTTGTTACAATTCCCTCCGTACTTCACATATG
ATATAATCATGCATTTCACGCATAACAATCCAAATAATATTACCTTAATGTGTACTGCACACTAT
AATACATCGATACATAGCTCTATCATACAAAACATACTTGCAGACTTTCATGAATTCAGATTACC
TTAAACACGCATGTCGTGCTTATCCACCAAAATCATATACTACCATAGGTTTCAAACAAAATTCA
GAGCAGACATAAACACAAATCACTCAAGCAACACTCATCCTTTAATCATCCAAGAGTAGAGTACA
GTAACTCACCTTAAATCCTTCATCCTTGTCAGCTTAGCTTTTCCAATTTCCAGAGCCTCTATCGT
TTTTGGAAATTAAACACGACAATTATATATTAGTTAAATCGAAGGAATCAACCCTTAAACCTGAA
ATCCATTATACAAAAATTTATTAGGAATCCATACTCTCACTCTTCCTCTAATCTATGAGCACAAA
AAGATAAGAAAGCTTACCAGTTTCTCAAATTCTCTACTTCCAGGCTTCAAATCTCACAACTACTG
CCTCATGCAAAGCTCTCCTAAATTTTCCTCTTATTCGGAATAATCGAAGAAGACGATGCAATTGA
GAAGAAAATTTTCCAACAGAATTGAGAAGAATTCCTTTAGTAGGAATATCCCTTCTCACCTAAAT
ATATAGCTCCTCTTGCACGGTCTCCAAATCTCAATTAGCCATCCATCGACAATCATTGTGTCTCC
CACTATGGAACCAGTCGGTTCCATCTTAACCAAACCAAAATTGAAACTCCAACTAATTGCCTAAT
AGTCAC
Found at i:9062687 original size:40 final size:40
Alignment explanation
Indices: 9062637--9062745 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 40
9062627 GGGCATATAC
* * *
9062637 GTGTAGTCAGGGGCACCGAAGTGCAAACAGGGACACCAAA
1 GTGTATTCAGGGGCACAGAAGTGCAAACAGGAACACCAAA
* * * ** *
9062677 TTTTATTCAGGGGCATAGTTGTGCAAACAGGAACACCGAA
1 GTGTATTCAGGGGCACAGAAGTGCAAACAGGAACACCAAA
* **
9062717 GTGTATTCAGAGGCACAGCTGTGCAAACA
1 GTGTATTCAGGGGCACAGAAGTGCAAACA
9062746 AGAGCACTTC
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.18
Consensus pattern (40 bp):
GTGTATTCAGGGGCACAGAAGTGCAAACAGGAACACCAAA
Found at i:9063184 original size:29 final size:30
Alignment explanation
Indices: 9063147--9063213 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
9063137 CATATGACCA
* *
9063147 TAAAGTTTT-CATTAATTACATATTT-TCCC
1 TAAACTTTTACATTAATCACA-ATTTATCCC
*
9063176 TAAACTTTTACATTTATCACAATTTAGTCCC
1 TAAACTTTTACATTAATCACAATTTA-TCCC
9063207 TAAACTT
1 TAAACTT
9063214 AAATCTCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 12 0.38
30 9 0.28
31 11 0.34
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (30 bp):
TAAACTTTTACATTAATCACAATTTATCCC
Found at i:9077154 original size:49 final size:48
Alignment explanation
Indices: 9077101--9077287 Score: 189
Period size: 49 Copynumber: 3.8 Consensus size: 48
9077091 CAAGCCAATA
* * *
9077101 TGGTTACCAACTAACATGTCCAATCAGTGGCCCACCTTATTCACCCATC
1 TGGTTAGCAACTAACATG-CCTATCAGTGGCCCACCTTATTCGCCCATC
* * * * * ** *
9077150 TGGTTAGCAACTAACATGCCCTACCAATGGTCTATCACA-TCTGCCAATC
1 TGGTTAGCAACTAACATG-CCTATCAGTGGCCCACCTTATTC-GCCCATC
*
9077199 TGGTTAGAAACTAACATGCCTTATCAGTGGCCCACCTTATTCGCCCATC
1 TGGTTAGCAACTAACATGCC-TATCAGTGGCCCACCTTATTCGCCCATC
*
9077248 TGGTTAGCAACTAACATGCGCTA-CTAGTGGCCCATCTTAT
1 TGGTTAGCAACTAACATGC-CTATC-AGTGGCCCACCTTAT
9077288 ACAGATACCG
Statistics
Matches: 110, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
48 5 0.05
49 102 0.93
50 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (48 bp):
TGGTTAGCAACTAACATGCCTATCAGTGGCCCACCTTATTCGCCCATC
Found at i:9077197 original size:98 final size:98
Alignment explanation
Indices: 9077052--9077271 Score: 293
Period size: 98 Copynumber: 2.2 Consensus size: 98
9077042 CTCTTTGCCA
*
9077052 TGGTTAGCAACTAACATGCCCTACCAGAAACCTAGCACTCAAGCCAATATGGTTACCAACTAACA
1 TGGTTAGCAACTAACATGCCCTACCAGAAACCTAGCACTCAAGCCAATATGGTTACAAACTAACA
9077117 TGTCC-AATCAGTGGCCCACCTTATTCACCCATC
66 TG-CCTAATCAGTGGCCCACCTTATTCACCCATC
*** * * * *
9077150 TGGTTAGCAACTAACATGCCCTACCA-ATGGTCTATCACATC-TGCCAATCTGGTTAGAAACTAA
1 TGGTTAGCAACTAACATGCCCTACCAGA-AACCTAGCAC-TCAAGCCAATATGGTTACAAACTAA
* *
9077213 CATGCCTTATCAGTGGCCCACCTTATTCGCCCATC
64 CATGCCTAATCAGTGGCCCACCTTATTCACCCATC
*
9077248 TGGTTAGCAACTAACATGCGCTAC
1 TGGTTAGCAACTAACATGCCCTAC
9077272 TAGTGGCCCA
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
97 3 0.03
98 103 0.95
99 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (98 bp):
TGGTTAGCAACTAACATGCCCTACCAGAAACCTAGCACTCAAGCCAATATGGTTACAAACTAACA
TGCCTAATCAGTGGCCCACCTTATTCACCCATC
Found at i:9083376 original size:134 final size:134
Alignment explanation
Indices: 9083136--9083394 Score: 473
Period size: 134 Copynumber: 1.9 Consensus size: 134
9083126 CCATGCGCAA
* *
9083136 GTATAATAGGTTCCTAAGAGTTCAAGCAATAGTTCTAGCATCCAGGAAGTGGACCCTCGACTCAG
1 GTATAATAGATTCATAAGAGTTCAAGCAATAGTTCTAGCATCCAGGAAGTGGACCCTCGACTCAG
*
9083201 AAATATTTGTATATATCTCATTTTGTTTAAGTATGGCATGTACTTAGGTTAAGTCATTTTTAGGC
66 AAATATTTGTATATATCTCATTTTGTTTAAGTATGACATGTACTTAGGTTAAGTCATTTTTAGGC
9083266 ATAT
131 ATAT
*
9083270 GTATAATAGATTCATAAGAGTTCAAGCAATAGTTCTAGCGTCCAGGAAGTGGACCCTCGACTCAG
1 GTATAATAGATTCATAAGAGTTCAAGCAATAGTTCTAGCATCCAGGAAGTGGACCCTCGACTCAG
*
9083335 AAATATTTGTATATATCTCATTTTGTTTAAGTATGACATGTACTTAGGTTGAGTCATTTT
66 AAATATTTGTATATATCTCATTTTGTTTAAGTATGACATGTACTTAGGTTAAGTCATTTT
9083395 GTTATAAGTA
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
134 120 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (134 bp):
GTATAATAGATTCATAAGAGTTCAAGCAATAGTTCTAGCATCCAGGAAGTGGACCCTCGACTCAG
AAATATTTGTATATATCTCATTTTGTTTAAGTATGACATGTACTTAGGTTAAGTCATTTTTAGGC
ATAT
Found at i:9085899 original size:18 final size:18
Alignment explanation
Indices: 9085876--9085911 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9085866 GATATTTTCA
9085876 GAAAAATATTACTATAAT
1 GAAAAATATTACTATAAT
9085894 GAAAAATATTACTATAAT
1 GAAAAATATTACTATAAT
9085912 TGTTCTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (18 bp):
GAAAAATATTACTATAAT
Found at i:9093121 original size:19 final size:20
Alignment explanation
Indices: 9093099--9093151 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
9093089 GTTTTTTTGC
* *
9093099 AAAATCAAAATTTTCTTTAA
1 AAAATCAAAACTTTCCTTAA
**
9093119 AAAATCACTACTTTCCTT-A
1 AAAATCAAAACTTTCCTTAA
*
9093138 AAAATCAAAGCTTT
1 AAAATCAAAACTTT
9093152 ATTTCGAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATCAAAACTTTCCTTAA
Found at i:9093543 original size:144 final size:147
Alignment explanation
Indices: 9093223--9093550 Score: 436
Period size: 144 Copynumber: 2.2 Consensus size: 147
9093213 ATGACTAATT
* *
9093223 TTTTTAAAAAAATATAAACTCTCTTTTT--TAAAAAATCACTATTTTTCTTAAAAATCAAAGCTT
1 TTTTT-AAAAAATATAAACTCTCTTTTTAAAAAAAAATCACTATTTTTCTT-AAAATCAAAACTT
*
9093286 TATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATTTTCCTTTAAAA
64 TATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAAA
* *
9093351 TGACTAAAAGACATTTTTA
129 TGACTAAAAGACATATGTA
*
9093370 -TTTT-AAAAATCTAAACTTTCTCTTTTTAAAAAAAAATCACTATTTTTCTT-AAATCAAAACTT
1 TTTTTAAAAAATATAAAC--TCTCTTTTTAAAAAAAAATCACTATTTTTCTTAAAATCAAAACTT
* * ** * *
9093432 TATTTCAAAATAGTTGAAAAAGAT-CAAAACTTTGTTTT-AAAAATTTAATATCTTCCTTTAATA
64 TATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAAA
* *
9093495 TGACTAAAATATATATGTA
129 TGACTAAAAGACATATGTA
9093514 TTTTTAAAAAATATAAACTCTCTTTTTAAAATAAAAA
1 TTTTTAAAAAATATAAACTCTCTTTTTAAAA-AAAAA
9093551 ATAAAAACTT
Statistics
Matches: 159, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
144 61 0.38
145 20 0.13
146 58 0.36
148 20 0.13
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.41
Consensus pattern (147 bp):
TTTTTAAAAAATATAAACTCTCTTTTTAAAAAAAAATCACTATTTTTCTTAAAATCAAAACTTTA
TTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAAATG
ACTAAAAGACATATGTA
Found at i:9093550 original size:146 final size:148
Alignment explanation
Indices: 9093223--9093552 Score: 435
Period size: 146 Copynumber: 2.3 Consensus size: 148
9093213 ATGACTAATT
*
9093223 TTTTTAAAAAAATATAAACTCTCTTTTT---TAAAAAATCACTATTTTTCTTAAAAATCAAAGCT
1 TTTTT-AAAAAATATAAACTCTCTTTTTAAATAAAAAATCACTATTTTTCTT-AAAATCAAAACT
*
9093285 TTATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATTTTCCTTTAAA
64 TTATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAA
* *
9093350 ATGACTAAAAGACATTTTTA
129 ATGACTAAAAGACATATGTA
*
9093370 -TTTT-AAAAATCTAAACTTTCTCTTTTTAAA-AAAAAATCACTATTTTTCTT-AAATCAAAACT
1 TTTTTAAAAAATATAAAC--TCTCTTTTTAAATAAAAAATCACTATTTTTCTTAAAATCAAAACT
* * ** * *
9093431 TTATTTCAAAATAGTTGAAAAAGAT-CAAAACTTTGTTTT-AAAAATTTAATATCTTCCTTTAAT
64 TTATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAA
* *
9093494 ATGACTAAAATATATATGTA
129 ATGACTAAAAGACATATGTA
9093514 TTTTTAAAAAATATAAACTCTCTTTTTAAAATAAAAAAT
1 TTTTTAAAAAATATAAACTCTCTTTTT-AAATAAAAAAT
9093553 AAAAACTTTT
Statistics
Matches: 160, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
144 57 0.36
145 18 0.11
146 65 0.41
148 20 0.12
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.41
Consensus pattern (148 bp):
TTTTTAAAAAATATAAACTCTCTTTTTAAATAAAAAATCACTATTTTTCTTAAAATCAAAACTTT
ATTTCAAAATAGTTAAAAAAGATAAAAAAAATTGTTTTAAAAAATTTAAAATCTTCCTTTAAAAT
GACTAAAAGACATATGTA
Found at i:9093879 original size:13 final size:13
Alignment explanation
Indices: 9093861--9093887 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9093851 ATTTGTAAAT
9093861 AAATATAATAATA
1 AAATATAATAATA
9093874 AAATATAATAATA
1 AAATATAATAATA
9093887 A
1 A
9093888 TAGTAATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATATAATAATA
Found at i:9095548 original size:6 final size:6
Alignment explanation
Indices: 9095539--9095569 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
9095529 TATATTTACC
9095539 TTCAAT TTCAAT TTCAAT TTCAAT TT-AAT TT
1 TTCAAT TTCAAT TTCAAT TTCAAT TTCAAT TT
9095570 GTTTATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (6 bp):
TTCAAT
Found at i:9097840 original size:25 final size:25
Alignment explanation
Indices: 9097806--9097855 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9097796 AAAGGGGCGG
*
9097806 TAAGACATTTCGCAAGAATTTTTAA
1 TAAGACATTTCACAAGAATTTTTAA
* *
9097831 TAAGGCATTTCACATGAATTTTTAA
1 TAAGACATTTCACAAGAATTTTTAA
9097856 GTATGTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (25 bp):
TAAGACATTTCACAAGAATTTTTAA
Found at i:9098298 original size:41 final size:42
Alignment explanation
Indices: 9098237--9098527 Score: 328
Period size: 41 Copynumber: 7.1 Consensus size: 42
9098227 TTCTGAGCTT
*
9098237 TCTA-GGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATCC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
* *
9098278 TC-AGGGCTTTAGCGGCGTTTTTAAAAAGGCGCCACTAATGC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
*
9098319 T-TGGGGCTTTAGCGGCGTTTCTT-AAAAAGCGCCGCTAATGC
1 TCTAGGGCTTTAGCGGCGTTT-TTAAAAAAGCGCCGCTAATGC
* *
9098360 TCTA-GGCTTTAGCGGCGTTTTTAGAATAGCGCCGCTAATGC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
* * * *
9098401 TC-AGGGCTTTAGTGGCGTTTTTCAAATAGCACCGCTAATGC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
** * ** * *
9098442 TCTA--TTTTTAGCGGCATTTTCCAATAACCGCCGCTAATGC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
* * * *
9098482 TCTGGGGCTTTAGCGGCATTTTTTAAAAAGCACCGCTAATGC
1 TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
9098524 TCTA
1 TCTA
9098528 TTTTTAGCGA
Statistics
Matches: 210, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
40 34 0.16
41 140 0.67
42 36 0.17
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (42 bp):
TCTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
Found at i:9098476 original size:40 final size:40
Alignment explanation
Indices: 9098430--9098536 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 40
9098420 TTTCAAATAG
*
9098430 CACCGCTAATGCTCTATTTTTAGCGGCATTTTCCAATAAC
1 CACCGCTAATGCTCTATTTTTAGCGGCATTTTCCAAAAAC
* *** ** *
9098470 CGCCGCTAATGCTCTGGGGCTTTAGCGGCATTTTTTAAAAAG
1 CACCGCTAATGCTCT--ATTTTTAGCGGCATTTTCCAAAAAC
9098512 CACCGCTAATGCTCTATTTTTAGCG
1 CACCGCTAATGCTCTATTTTTAGCG
9098537 ACGCTTTTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
40 21 0.40
42 32 0.60
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (40 bp):
CACCGCTAATGCTCTATTTTTAGCGGCATTTTCCAAAAAC
Found at i:9098550 original size:40 final size:39
Alignment explanation
Indices: 9098419--9098551 Score: 108
Period size: 40 Copynumber: 3.3 Consensus size: 39
9098409 TTAGTGGCGT
*
9098419 TTTTCAAATAGCACCGCTAATGCTCTATTTTTAGCG-GC
1 TTTTCAAAAAGCACCGCTAATGCTCTATTTTTAGCGCGC
* * * ***
9098457 ATTTTCCAATAACCGCCGCTAATGCTCTGGGGCTTTAGCG-GC
1 -TTTT-CAAAAAGCACCGCTAATGCTCT--ATTTTTAGCGCGC
*
9098499 ATTTTTTAAAAAGCACCGCTAATGCTCTATTTTTAGCGACGC
1 --TTTTCAAAAAGCACCGCTAATGCTCTATTTTTAGCG-CGC
*
9098541 TTTTGAAAAAG
1 TTTTCAAAAAG
9098552 TGTCACAAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
39 4 0.06
40 35 0.49
42 29 0.40
43 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (39 bp):
TTTTCAAAAAGCACCGCTAATGCTCTATTTTTAGCGCGC
Found at i:9098992 original size:13 final size:14
Alignment explanation
Indices: 9098972--9099007 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
9098962 TTATTTGTTA
9098972 AGGGTTTAGGGTTT
1 AGGGTTTAGGGTTT
*
9098986 A-GGTTTATGGTTT
1 AGGGTTTAGGGTTT
9098999 AGGGTTTAG
1 AGGGTTTAG
9099008 ATTAACTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.17, C:0.00, G:0.39, T:0.44
Consensus pattern (14 bp):
AGGGTTTAGGGTTT
Found at i:9099006 original size:14 final size:14
Alignment explanation
Indices: 9098944--9099006 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
9098934 TTAAAGGCTG
*
9098944 GGGTTTAAGGTTTA
1 GGGTTTATGGTTTA
* *
9098958 GAGG-TTATTTGTTAA
1 G-GGTTTA-TGGTTTA
*
9098973 GGGTTTAGGGTTTA
1 GGGTTTATGGTTTA
9098987 -GGTTTATGGTTTA
1 GGGTTTATGGTTTA
9099000 GGGTTTA
1 GGGTTTA
9099007 GATTAACTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 12 0.32
14 16 0.42
15 10 0.26
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (14 bp):
GGGTTTATGGTTTA
Found at i:9099007 original size:7 final size:7
Alignment explanation
Indices: 9098972--9099007 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
9098962 TTATTTGTTA
9098972 AGGGTTT
1 AGGGTTT
9098979 AGGGTTT
1 AGGGTTT
9098986 A-GGTTT
1 AGGGTTT
*
9098992 ATGGTTT
1 AGGGTTT
9098999 AGGGTTT
1 AGGGTTT
9099006 AG
1 AG
9099008 ATTAACTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.17, C:0.00, G:0.39, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:9099064 original size:7 final size:7
Alignment explanation
Indices: 9099054--9099253 Score: 62
Period size: 7 Copynumber: 28.1 Consensus size: 7
9099044 AATTATTATA
9099054 GTTTAGG
1 GTTTAGG
*
9099061 GTTTATG
1 GTTTAGG
*
9099068 GTTTAGA
1 GTTTAGG
* *
9099075 GTATATG
1 GTTTAGG
*
9099082 GTATAGG
1 GTTTAGG
*
9099089 GTTTAAG
1 GTTTAGG
9099096 GTTTAGG
1 GTTTAGG
**
9099103 AG-TTACT
1 -GTTTAGG
* *
9099110 ATCTTAAG
1 GT-TTAGG
*
9099118 GTTTATG
1 GTTTAGG
* *
9099125 GATTATG
1 GTTTAGG
*
9099132 GATTATGG
1 GTTTA-GG
*
9099140 ATTTAGG
1 GTTTAGG
* *
9099147 GATTATG
1 GTTTAGG
*
9099154 GTTTATG
1 GTTTAGG
*
9099161 GTTTATG
1 GTTTAGG
*
9099168 GTTTATG
1 GTTTAGG
9099175 GTTTATGG
1 GTTTA-GG
*
9099183 G-TTGGG
1 GTTTAGG
*
9099189 GTTTAAG
1 GTTTAGG
9099196 GTTTAGG
1 GTTTAGG
*
9099203 GCTTAGGG
1 GTTTA-GG
* *
9099211 GGTAAGG
1 GTTTAGG
* *
9099218 GTTCAAG
1 GTTTAGG
*
9099225 GTTTATG
1 GTTTAGG
* *
9099232 TTTTATG
1 GTTTAGG
*
9099239 ATTTAGG
1 GTTTAGG
9099246 GTTTAGG
1 GTTTAGG
9099253 G
1 G
9099254 GATAAGGGAT
Statistics
Matches: 144, Mismatches: 42, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
6 3 0.02
7 125 0.87
8 16 0.11
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:9099071 original size:14 final size:14
Alignment explanation
Indices: 9099049--9099250 Score: 120
Period size: 14 Copynumber: 14.2 Consensus size: 14
9099039 GAATTAATTA
*
9099049 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
9099063 TTATGGTTTAGAGT
1 TTATGGTTTAGGGT
* *
9099077 ATATGGTATAGGGT
1 TTATGGTTTAGGGT
*
9099091 TTAAGGTTTAGGAGT
1 TTATGGTTTAGG-GT
* *
9099106 TACTAT--CTTAAGGT
1 T--TATGGTTTAGGGT
* * *
9099120 TTATGGATTATGGA
1 TTATGGTTTAGGGT
*
9099134 TTATGGATTTAGGGA
1 TTATGG-TTTAGGGT
*
9099149 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
*
9099163 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* *
9099177 TTATGGGTTGGGGT
1 TTATGGTTTAGGGT
* *
9099191 TTAAGGTTTAGGGC
1 TTATGGTTTAGGGT
* * *
9099205 TTAGGGGGTAAGGGT
1 TTA-TGGTTTAGGGT
* * * *
9099220 TCAAGGTTTATGTT
1 TTATGGTTTAGGGT
*
9099234 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
9099248 TTA
1 TTA
9099251 GGGGATAAGG
Statistics
Matches: 141, Mismatches: 40, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
12 3 0.02
14 108 0.77
15 28 0.20
17 2 0.01
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:9099173 original size:21 final size:21
Alignment explanation
Indices: 9099117--9099210 Score: 89
Period size: 21 Copynumber: 4.4 Consensus size: 21
9099107 ACTATCTTAA
* *
9099117 GGTTTATGGATTATGGATTAT
1 GGTTTAGGGATTATGGTTTAT
9099138 GGATTTAGGGATTATGGTTTAT
1 GG-TTTAGGGATTATGGTTTAT
* *
9099160 GGTTTATGGTTTATGGTTTAT
1 GGTTTAGGGATTATGGTTTAT
* * * * *
9099181 GGGTTGGGGTTTAAGGTTTAG
1 GGTTTAGGGATTATGGTTTAT
*
9099202 GGCTTAGGG
1 GGTTTAGGG
9099211 GGTAAGGGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 42 0.69
22 19 0.31
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (21 bp):
GGTTTAGGGATTATGGTTTAT
Found at i:9099280 original size:43 final size:43
Alignment explanation
Indices: 9099187--9099280 Score: 100
Period size: 43 Copynumber: 2.2 Consensus size: 43
9099177 TTATGGGTTG
* * * *
9099187 GGGTTTAAGGTTTAGGGCTTAGGGGGTAAGGGTTCAAGGTTTA
1 GGGTTTATGATTTAGGGCTTAGGGGATAAGGGATCAAGGTTTA
* * * *
9099230 TGTTTTATGATTTAGGGTTTAGGGGATAAGGGAT-AGGGGTTTA
1 GGGTTTATGATTTAGGGCTTAGGGGATAAGGGATCA-AGGTTTA
9099273 GGGTTTAT
1 GGGTTTAT
9099281 ATTAATTAGT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
42 1 0.03
43 39 0.98
ACGTcount: A:0.21, C:0.02, G:0.39, T:0.37
Consensus pattern (43 bp):
GGGTTTATGATTTAGGGCTTAGGGGATAAGGGATCAAGGTTTA
Found at i:9106970 original size:25 final size:25
Alignment explanation
Indices: 9106939--9106997 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
9106929 TTTACCCCTC
* *
9106939 GTAAAATTTTGACCATTTTACTTTA
1 GTAAAATTTTAACCATTTTACCTTA
* *
9106964 GTAAAATTTTAACGATTTTGCCTTA
1 GTAAAATTTTAACCATTTTACCTTA
9106989 GTAAAATTT
1 GTAAAATTT
9106998 CGAGAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (25 bp):
GTAAAATTTTAACCATTTTACCTTA
Found at i:9108976 original size:30 final size:30
Alignment explanation
Indices: 9108902--9108977 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
9108892 AGAATCAGTC
* * * * *
9108902 TGGGCCTGAGCCCTATACAGTAATAGTGTG
1 TGGGCCTTAGCCCAATACAATAACAGAGTG
* * *
9108932 TGGGTCATAACCCAATACAATAACAGAGTG
1 TGGGCCTTAGCCCAATACAATAACAGAGTG
9108962 TGGGCCTTAGCCCAAT
1 TGGGCCTTAGCCCAAT
9108978 TCAGTAATAG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (30 bp):
TGGGCCTTAGCCCAATACAATAACAGAGTG
Found at i:9109140 original size:26 final size:26
Alignment explanation
Indices: 9109096--9109218 Score: 95
Period size: 26 Copynumber: 4.7 Consensus size: 26
9109086 CACTAATATC
* * *
9109096 GCAGCAAAGATGCCTGTAATAGTAAT
1 GCAGCAAAGCTACCAGTAATAGTAAT
* *
9109122 GCAACAAAGCTACCAGTAACAGTAAT
1 GCAGCAAAGCTACCAGTAATAGTAAT
* * *
9109148 GTAGCAGAGCTACCAGT-ATCAGTAAC
1 GCAGCAAAGCTACCAGTAAT-AGTAAT
* ** *
9109174 GCAGCAAAACTGTCAGTAATAGTATTT
1 GCAGCAAAGCTACCAGTAATAGTA-AT
* *
9109201 GTAGCAAAGCCACCAGTA
1 GCAGCAAAGCTACCAGTA
9109219 CAGTATACTT
Statistics
Matches: 72, Mismatches: 22, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
25 1 0.01
26 56 0.78
27 15 0.21
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGTAATAGTAAT
Found at i:9109573 original size:80 final size:81
Alignment explanation
Indices: 9109407--9109613 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 81
9109397 TACCTTATAG
* * *
9109407 GGGTATTTCATTAATTTTACCCTAT-GGGGGTATTTCAGTAATTTTACCCATAAAGGGTATTTTA
1 GGGTATTTCAATAATTTTACCC-ATCGAGGGTATTTCAGTAATTTTACCCATAAAGGGTATTTCA
* *
9109471 GTCACTTTACCCTTCGG
65 GTCACTTTACCCATCGA
** ** *
9109488 GGGTATTTCAATAATTTTACCCATCGAGGGTATTTCA-TTTTTTTACCCATCGAGGGTATTTCGG
1 GGGTATTTCAATAATTTTACCCATCGAGGGTATTTCAGTAATTTTACCCATAAAGGGTATTTCAG
*
9109552 TCATTTTACCCATCGA
66 TCACTTTACCCATCGA
* **
9109568 GGGTATTTCAATCATTTTACCCATCGAAAGTATTTC-GATAATTTTA
1 GGGTATTTCAATAATTTTACCCATCGAGGGTATTTCAG-TAATTTTA
9109614 AAGGCCCATT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 69 0.64
81 38 0.36
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAATAATTTTACCCATCGAGGGTATTTCAGTAATTTTACCCATAAAGGGTATTTCAG
TCACTTTACCCATCGA
Found at i:9109590 original size:27 final size:27
Alignment explanation
Indices: 9109407--9109613 Score: 211
Period size: 27 Copynumber: 7.7 Consensus size: 27
9109397 TACCTTATAG
* *
9109407 GGGTATTTCATTAATTTTACCCTAT-GG
1 GGGTATTTCAATAATTTTACCC-ATCGA
* **
9109434 GGGTATTTCAGTAATTTTACCCATAAA
1 GGGTATTTCAATAATTTTACCCATCGA
* * * * * *
9109461 GGGTATTTTAGTCACTTTACCCTTCGG
1 GGGTATTTCAATAATTTTACCCATCGA
9109488 GGGTATTTCAATAATTTTACCCATCGA
1 GGGTATTTCAATAATTTTACCCATCGA
**
9109515 GGGTATTTC-ATTTTTTTACCCATCGA
1 GGGTATTTCAATAATTTTACCCATCGA
** *
9109541 GGGTATTTCGGTCATTTTACCCATCGA
1 GGGTATTTCAATAATTTTACCCATCGA
*
9109568 GGGTATTTCAATCATTTTACCCATCGA
1 GGGTATTTCAATAATTTTACCCATCGA
** *
9109595 AAGTATTTCGATAATTTTA
1 GGGTATTTCAATAATTTTA
9109614 AAGGCCCATT
Statistics
Matches: 151, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 26 0.17
27 125 0.83
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTACCCATCGA
Found at i:9115394 original size:24 final size:24
Alignment explanation
Indices: 9115362--9115412 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
9115352 AATAGGATCA
9115362 TACAGATACATATATACATAATCC
1 TACAGATACATATATACATAATCC
9115386 TACAGATACATATATACATAATCC
1 TACAGATACATATATACATAATCC
9115410 TAC
1 TAC
9115413 CCCCATCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (24 bp):
TACAGATACATATATACATAATCC
Found at i:9117980 original size:41 final size:41
Alignment explanation
Indices: 9117885--9117995 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 41
9117875 TCCAGATATT
* ***
9117885 ATACACCAGCA-AGAAGCTTACTAGGCATAAAGCCGGATCTG
1 ATACACCAGCATA-AAGCTTGCTAGGCATAAAGCCGGATAAA
*
9117926 ATACACCAGCATAAAGCTTGCTAGGCATAAAGCCTGATAAA
1 ATACACCAGCATAAAGCTTGCTAGGCATAAAGCCGGATAAA
* * *
9117967 ATTCACC-GACATAAGGCCTGCTAGGCATA
1 ATACACCAG-CATAAAGCTTGCTAGGCATA
9117996 GAGCTTGAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 58 0.97
42 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (41 bp):
ATACACCAGCATAAAGCTTGCTAGGCATAAAGCCGGATAAA
Found at i:9124468 original size:60 final size:60
Alignment explanation
Indices: 9124400--9124519 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
9124390 ATTTTAAACA
9124400 TTATATCCATATATACATTTTACCAAATTAAATTTTTAACCATTTTAGAATATAAATGCC
1 TTATATCCATATATACATTTTACCAAATTAAATTTTTAACCATTTTAGAATATAAATGCC
9124460 TTATATCCATATATACATTTTACCAAATTAAATTTTTAACCATTTTAGAATATAAATGCC
1 TTATATCCATATATACATTTTACCAAATTAAATTTTTAACCATTTTAGAATATAAATGCC
9124520 AAATCATAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.42
Consensus pattern (60 bp):
TTATATCCATATATACATTTTACCAAATTAAATTTTTAACCATTTTAGAATATAAATGCC
Found at i:9124751 original size:13 final size:13
Alignment explanation
Indices: 9124733--9124757 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9124723 CCGAGCCTAA
9124733 CTAGTCAAATACC
1 CTAGTCAAATACC
9124746 CTAGTCAAATAC
1 CTAGTCAAATAC
9124758 TAGCTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (13 bp):
CTAGTCAAATACC
Found at i:9125559 original size:40 final size:41
Alignment explanation
Indices: 9125515--9125622 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
9125505 CACCGGCACG
***
9125515 AAGCCTGCTAGGCAT-AAGCCTAATCTGATACACCAACATA
1 AAGCCTGCTAGGCATAAAGCCTAATAAAATACACCAACATA
* * * * *
9125555 AAGCCAGCTAGGCGTAAAGCCTGATAAAATTCACCAGCATA
1 AAGCCTGCTAGGCATAAAGCCTAATAAAATACACCAACATA
* *
9125596 AGGCCTGCTAGGCACAAAGCCTGAATA
1 AAGCCTGCTAGGCATAAAGCCT-AATA
9125623 TCACTGATAT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
40 13 0.25
41 37 0.70
42 3 0.06
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCTAATAAAATACACCAACATA
Found at i:9133285 original size:22 final size:22
Alignment explanation
Indices: 9133225--9133282 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
9133215 AATCTTCAAG
9133225 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
9133244 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
9133266 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
9133283 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:9134006 original size:24 final size:24
Alignment explanation
Indices: 9133979--9134024 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9133969 AACTCATTTA
9133979 TATATT-ATTACTTTATATATTACC
1 TATATTCATT-CTTTATATATTACC
*
9134003 TATATTCATTTTTTATATATTA
1 TATATTCATTCTTTATATATTA
9134025 TTTATTCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (24 bp):
TATATTCATTCTTTATATATTACC
Found at i:9134151 original size:15 final size:16
Alignment explanation
Indices: 9134121--9134153 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9134111 TTTTCCCTTA
9134121 TTATTCATTTTCAAAT
1 TTATTCATTTTCAAAT
*
9134137 TTATT-ATTTTTAAAT
1 TTATTCATTTTCAAAT
9134152 TT
1 TT
9134154 GTTTACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTCATTTTCAAAT
Found at i:9135967 original size:19 final size:19
Alignment explanation
Indices: 9135943--9135989 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
9135933 ATGTCTCTTT
*
9135943 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
9135962 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
9135981 TATGCATTA
1 TTTGCATTA
9135990 TAGTCCACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:9139000 original size:9 final size:8
Alignment explanation
Indices: 9138958--9138982 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9138948 CTATGAGTTT
9138958 TAAAAAAA
1 TAAAAAAA
9138966 TAAAAAAA
1 TAAAAAAA
9138974 TAAAAAAA
1 TAAAAAAA
9138982 T
1 T
9138983 CTTTCAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:9139060 original size:12 final size:11
Alignment explanation
Indices: 9139014--9139056 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
9139004 AAATGATGGA
*
9139014 AAAAGAAAAGA
1 AAAAGAAAAGG
* *
9139025 AAAAGAGAGGG
1 AAAAGAAAAGG
9139036 AAAAAGAAAAGG
1 -AAAAGAAAAGG
9139048 AAAAGAAAA
1 AAAAGAAAA
9139057 AGGAGAGGCC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAGG
Found at i:9139650 original size:66 final size:65
Alignment explanation
Indices: 9139534--9139666 Score: 205
Period size: 66 Copynumber: 2.0 Consensus size: 65
9139524 GAAATTACCA
* *
9139534 TTCGCTCTCTTTCCCTATCGAACATCTTCAGGACCTCCACCGGAGACAACACCTTTCTCCCTGGT
1 TTCGCTCTCTTTCCCTAGCAAACATCTTCAGGACCTCCACCGGAGACAACACCTTTCTCCCTGGT
* *
9139599 TNTCGCTCTCTTTCCCTAGCAAACATCTGTCAGGACCTCCACCGG-GGCAACACCTTTCTCCTTG
1 T-TCGCTCTCTTTCCCTAGCAAACATCT-TCAGGACCTCCACCGGAGACAACACCTTTCTCCCTG
9139663 GT
64 GT
9139665 TT
1 TT
9139667 ACGGAATAGA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
65 2 0.03
66 44 0.71
67 16 0.26
ACGTcount: A:0.17, C:0.37, G:0.15, T:0.30
Consensus pattern (65 bp):
TTCGCTCTCTTTCCCTAGCAAACATCTTCAGGACCTCCACCGGAGACAACACCTTTCTCCCTGGT
Found at i:9141095 original size:24 final size:24
Alignment explanation
Indices: 9141063--9141118 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
9141053 GTCCCAAAAG
*
9141063 TACAATGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
9141087 TACAGTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
9141111 TACAGTGG
1 TACAGTGG
9141119 GGGCAATCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (24 bp):
TACAGTGGATTGAACCTTGAAGAT
Found at i:9141566 original size:88 final size:88
Alignment explanation
Indices: 9141448--9141744 Score: 326
Period size: 88 Copynumber: 3.4 Consensus size: 88
9141438 AGATGGTAAA
* * * *
9141448 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTTCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCCAAAGTTGCA
*
9141513 GTAGAGCAAATTAAAGTTACAAG
66 GTGGAGCAAATTAAAGTTACAAG
* * * * * * * *
9141536 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAA-CAAAGCAAGTCTTAACCCCCCAAAATTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-TAA-TCCTATCTCCCCAAAGTTG
* * * * ** *
9141600 CAGTGGGGTAAACTGAAGATGGCAAA
64 CAGTGGAGCAAATTAAAG-TTACAAG
* * * * *
9141626 TCTTATCTCCCTGAAGTTACAATGGAGAAGATTAAAGCCAATAATCCTATCTCCCCGAGGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCCAAAGTTGCA
*
9141691 GTGGAGCAGATTAAAGTTACAAG
66 GTGGAGCAAATTAAAGTTACAAG
9141714 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
9141745 CTGAAGATAG
Statistics
Matches: 161, Mismatches: 44, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
87 3 0.02
88 66 0.41
89 52 0.32
90 37 0.23
91 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (88 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCCAAAGTTGCA
GTGGAGCAAATTAAAGTTACAAG
Found at i:9141743 original size:44 final size:44
Alignment explanation
Indices: 9141445--9141744 Score: 217
Period size: 44 Copynumber: 6.8 Consensus size: 44
9141435 AGAAGATGGT
* * *
9141445 AAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC
* * * * * *
9141488 ATAATCCTATCTCCCTAAAGTTTCAGTAGAGCAAATTAAAGTTAC
1 A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC
* * * ***
9141533 AAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAACAAAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCA-C
* * * ** * * * * * * **
9141578 AAGTCTTAACCCCCCAAAATTGCAGTGGGGTAAACTGAAGATGGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TCAC
* * * *
9141623 AAATCTTATCTCCCTGAAGTTACAATGGAGAAGATTAAAGCCA-
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC
* * * *
9141666 ATAATCCTATCTCCCCGAGGTTGCAGTGGAGCAGATTAAAGTTAC
1 A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC
*
9141711 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
9141745 CTGAAGATAG
Statistics
Matches: 193, Mismatches: 58, Indels: 11
0.74 0.22 0.04
Matches are distributed among these distances:
43 2 0.01
44 131 0.68
45 60 0.31
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAC
Found at i:9141782 original size:45 final size:44
Alignment explanation
Indices: 9141448--9141784 Score: 171
Period size: 44 Copynumber: 7.6 Consensus size: 44
9141438 AGATGGTAAA
* * * * *
9141448 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCA-ATAA-
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAG--ATACAAG
* * * * * * *
9141492 TCCTATCTCCCTAAAGTTTCAGTAGAGCAAATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATACAAG
** * *
9141536 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAACAAAGCAAG
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATA-CAAG
* * ** * * * * * * * *
9141581 TCTTAACCCCCCAAAATTGCAGTGGGGTAAACTGAAGATGGCAAA
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGAT-ACAAG
* * * * *
9141626 TCTTATCTCCCTGAAGTTACAATGGAGAAGATTAAAGCCA-ATAA-
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAG--ATACAAG
* * * * * *
9141670 TCCTATCTCCCCGAGGTTGCAGTGGAGCAGATTAAAGTTACAAG
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATACAAG
* *
9141714 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA-
1 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATA-C-AAG
* **
9141759 TCTTATTTCCCTGGTGTTCCAGTGGA
1 TCTTATCTCCCTGAAGTTCCAGTGGA
9141785 ACATATTAAA
Statistics
Matches: 222, Mismatches: 61, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
43 6 0.03
44 129 0.58
45 84 0.38
46 2 0.01
47 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACTAAAGATACAAG
Found at i:9141936 original size:143 final size:143
Alignment explanation
Indices: 9141685--9142037 Score: 395
Period size: 143 Copynumber: 2.5 Consensus size: 143
9141675 TCTCCCCGAG
* ** * * *
9141685 GTTGCAGTGGAGCAGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
1 GTTGCAGTGGAGCAGATTGAAGCCACAAGACTTATCTCCCTGAAGTTACAGCGGAGCAGACTGAA
* * ** * *
9141750 GATAGCGAATCTTATTTCCCTGGTGTTCCAGTGGAACATATTAAAGCTACAAATTATGGCAGATT
66 GACAGCGAATCTTATTTCCCTAGCATTCCAGTGGAACAGATTAAAGCTACAAATTATGGCAGATC
9141815 TTATC-TTCTTAAA
131 TTATCTTTC-TAAA
* * *
9141828 GTTGCAGTGGAGCAGATTGAAGCCACTAGACTTATCTCCCTAAAGTTACAGCGGAGCAGGCTGAA
1 GTTGCAGTGGAGCAGATTGAAGCCACAAGACTTATCTCCCTGAAGTTACAGCGGAGCAGACTGAA
* ** * * *
9141893 GACATCGAATCTTATTTCCCTAGCATTGTAGTGGAGCAGATTAAAGCTACAAATTATGGTAGGTC
66 GACAGCGAATCTTATTTCCCTAGCATTCCAGTGGAACAGATTAAAGCTACAAATTATGGCAGATC
*
9141958 TTATCTTTCTGAA
131 TTATCTTTCTAAA
** * ** * * * *
9141971 GTTATAATGGAGCCTATTGAAGCCACCAA-CCTTATATCTCTGAATTTACAGCGGAGCAGACTGA
1 GTTGCAGTGGAGCAGATTGAAGCCA-CAAGACTTATCTCCCTGAAGTTACAGCGGAGCAGACTGA
9142035 AGA
65 AGA
9142038 TAACAGATCT
Statistics
Matches: 174, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
143 169 0.97
144 5 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (143 bp):
GTTGCAGTGGAGCAGATTGAAGCCACAAGACTTATCTCCCTGAAGTTACAGCGGAGCAGACTGAA
GACAGCGAATCTTATTTCCCTAGCATTCCAGTGGAACAGATTAAAGCTACAAATTATGGCAGATC
TTATCTTTCTAAA
Found at i:9142145 original size:89 final size:89
Alignment explanation
Indices: 9142016--9142244 Score: 271
Period size: 89 Copynumber: 2.6 Consensus size: 89
9142006 ATCTCTGAAT
* * * * ** * *
9142016 TTACAGCGGAGCAGACTGAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCCAAGTAGATCGAA
1 TTACAGCAGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCAAAACAGAGCAAA
*
9142081 GACACCAGCCTTGCCTCCCTGAGC
66 GACACCAGCCTTGCCTCCCTAAGC
* * *
9142105 TTACATC-GAAGTAGACTGAAGATAGCAGATCTTATCTTCCTGTATTGACAGCAAAACAGAGCAA
1 TTACAGCAG-AGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCAAAACAGAGCAA
* *
9142169 AGACACTAGCCTTGCCTCCCTAAGG
65 AGACACCAGCCTTGCCTCCCTAAGC
* * * * *
9142194 TTGCAGCAGAGTAGACTGAAAATAGTAGATCTTGTCTTCCTATACTGGCAG
1 TTACAGCAGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAG
9142245 TGAAGCAAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
88 1 0.01
89 115 0.98
90 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (89 bp):
TTACAGCAGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCAAAACAGAGCAAA
GACACCAGCCTTGCCTCCCTAAGC
Found at i:9142287 original size:89 final size:88
Alignment explanation
Indices: 9141994--9142324 Score: 250
Period size: 89 Copynumber: 3.7 Consensus size: 88
9141984 CTATTGAAGC
** * * * * *
9141994 CACCAACCTTATATCTCTGAATTTACAGCGGAGCAGACTGAAGATAACAGATCTTGTCTTCCTGT
1 CACCAACCTTACCTCCCTGAGTTTACAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTAT
* * *
9142059 ATTGGCAGCCAAGTAGATCGAAGA
66 ATTGGCAGCAAAGCAGAT-GAAAA
* * * * * * *
9142083 CACCAGCCTTGCCTCCCTGAGCTTACATCGAAGTAGACTGAAGATAGCAGATCTTATCTTCCTGT
1 CACCAACCTTACCTCCCTGAGTTTACAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTAT
* *
9142148 ATTGACAGCAAAACAGA-GCAAAGA
66 ATTGGCAGCAAAGCAGATG-AAA-A
* * * * * * * * *
9142172 CACTAGCCTTGCCTCCCTAAGGTTGCAGCAGAGTAGACTGAAAATAGTAGATCTTGTCTTCCTAT
1 CACCAACCTTACCTCCCTGAGTTTACAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTAT
* ** *
9142237 ACTGGCAGTGAAGCAAATTGAAAA
66 ATTGGCAGCAAAGCAGA-TGAAAA
* * * ** * * * *
9142261 CACCAACCTTACCTCTCTGAGTTTGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTA
1 CACCAACCTTACCTCCCTGAGTTTACAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTA
9142325 AGTAGTAGTG
Statistics
Matches: 190, Mismatches: 48, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
87 1 0.01
88 2 0.01
89 183 0.96
90 3 0.02
91 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (88 bp):
CACCAACCTTACCTCCCTGAGTTTACAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTAT
ATTGGCAGCAAAGCAGATGAAAA
Found at i:9142590 original size:131 final size:132
Alignment explanation
Indices: 9142287--9142676 Score: 566
Period size: 131 Copynumber: 3.0 Consensus size: 132
9142277 CTGAGTTTGC
*
9142287 AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * *
9142352 TGAATATTATCTTCCCAAGGTAGTAGGGAAACATATTTAAGCCACCAGTCCTATCTCCCTGAGCA
66 TGAATCTTATCTTCCCAAGGTAGTAGGGAAACAAATTTAAGCCACCAGTCTTATCTCCCTGAGCA
9142417 GT
131 GT
** * * * *
9142419 AGTGGAGTAGGTTGAAGATTGTAGATCCTACCTCCTTAAGCAGTAGTGGAGTAGATCGAAGACGA
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * * *
9142484 TGAATCCTATCTTCCCAAGATAGTA-GGAAGCAAATTTAAGCCACCAGTCTTATCTCCCTGAGTA
66 TGAATCTTATCTTCCCAAGGTAGTAGGGAAACAAATTTAAGCCACCAGTCTTATCTCCCTGAGCA
9142548 GT
131 GT
* *
9142550 AGTGGAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGG
1 AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
* * ** * * *
9142615 CGAGTCTTATCTTCCGGAGGTAGTAGGGAAACAGATTTAAACCACCAGCCTTATCTCCCTGA
66 TGAATCTTATCTTCCCAAGGTAGTAGGGAAACAAATTTAAGCCACCAGTCTTATCTCCCTGA
9142677 AGTTGCAGTA
Statistics
Matches: 225, Mismatches: 32, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
131 113 0.50
132 112 0.50
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
AGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG
TGAATCTTATCTTCCCAAGGTAGTAGGGAAACAAATTTAAGCCACCAGTCTTATCTCCCTGAGCA
GT
Found at i:9143157 original size:17 final size:18
Alignment explanation
Indices: 9143116--9143157 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
9143106 AAACTTCAAG
*
9143116 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAG-TAA
*
9143135 GATATGCAATTTTAG-AA
1 GATATGCAATCTTAGTAA
9143152 GATATG
1 GATATG
9143158 ATTTTGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 7 0.33
19 14 0.67
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (18 bp):
GATATGCAATCTTAGTAA
Found at i:9167234 original size:35 final size:36
Alignment explanation
Indices: 9167188--9167264 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
9167178 TTATTACGAA
* *
9167188 GTCTTACCCGGACATAAT-CCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
*
9167223 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAT-CCCACACGAAGTCATCGG
9167260 GTCTT
1 GTCTT
9167265 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 17 0.46
37 20 0.54
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
Found at i:9167483 original size:47 final size:47
Alignment explanation
Indices: 9167432--9167522 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
9167422 CACTCGGCCC
9167432 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
9167479 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
9167523 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:9172012 original size:198 final size:198
Alignment explanation
Indices: 9171674--9172064 Score: 594
Period size: 198 Copynumber: 2.0 Consensus size: 198
9171664 TTAACCTTTA
* *
9171674 TCAAATGGAACTCAAACTTCATGTATAACCGCAGAAACTGTTTAAGGCACGAATATAAATTGAAA
1 TCAAATGGAACTCAAACTTCATGTACAACCACAGAAACTGTTTAAGGCACGAATATAAATTGAAA
*
9171739 AAAAAATTTTGGCAAATTTCGTTACCTTATTAAAAAACCAAGTATCAAAACAATAAGGATTTTAC
66 AAAAAATTTTGGAAAATTTCGTTACCTTATTAAAAAACCAAGTATCAAAACAATAAGGATTTTAC
9171804 ACAAGGTAAATCAAGAGAATAACAAATCACGCTTCTTTTCGTAATGACTTTATCAACCACAATGT
131 ACAAGGTAAATCAAGAGAATAACAAATCACGCTTCTTTTCGTAATGACTTTATCAACCACAATGT
9171869 TTG
196 TTG
*
9171872 TCAAATGGAACTCAAACTTCATGTACAACCACATAAACTGTTTAAGGCACGAATATAAATTG-AA
1 TCAAATGGAACTCAAACTTCATGTACAACCACAGAAACTGTTTAAGGCACGAATATAAATTGAAA
* ** * * * * *
9171936 AACAAA-TTTGGAAAATTTCGTTACCTTATTCTCCAAAA-C-AGATTTGGACAA-ATTCGAGGAT
66 AAAAAATTTTGGAAAATTTCGTTACCTTA-T-TAAAAAACCAAG-TAT-CAAAACAAT-AAGGAT
9171997 TTTACACAAGGTAAATCAAGAGAATAACAAATCACGCTTCTTTTCGTAATGACTTTATCAACCAC
126 TTTACACAAGGTAAATCAAGAGAATAACAAATCACGCTTCTTTTCGTAATGACTTTATCAACCAC
9172062 AAT
191 AAT
9172065 CGAAGAGTAA
Statistics
Matches: 176, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
196 23 0.13
197 13 0.07
198 140 0.80
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (198 bp):
TCAAATGGAACTCAAACTTCATGTACAACCACAGAAACTGTTTAAGGCACGAATATAAATTGAAA
AAAAAATTTTGGAAAATTTCGTTACCTTATTAAAAAACCAAGTATCAAAACAATAAGGATTTTAC
ACAAGGTAAATCAAGAGAATAACAAATCACGCTTCTTTTCGTAATGACTTTATCAACCACAATGT
TTG
Found at i:9172169 original size:33 final size:33
Alignment explanation
Indices: 9172127--9172192 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
9172117 TCACCAAAAG
9172127 TTTTATCAATAATTTTCAAATCTACACGAGACT
1 TTTTATCAATAATTTTCAAATCTACACGAGACT
* *
9172160 TTTTATCAATAATTTTCAAATCTGCACGGGACT
1 TTTTATCAATAATTTTCAAATCTACACGAGACT
9172193 CGGTTGCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.39
Consensus pattern (33 bp):
TTTTATCAATAATTTTCAAATCTACACGAGACT
Found at i:9172543 original size:18 final size:20
Alignment explanation
Indices: 9172499--9172546 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
9172489 TCAATCTCAA
9172499 TCTCTTTTTTCTCTTTTTCAT
1 TCTC-TTTTTCTCTTTTTCAT
*
9172520 TCTCTTTTTCT-TTTTTGAT
1 TCTCTTTTTCTCTTTTTCAT
9172539 T-TCTTTTT
1 TCTCTTTTT
9172547 TTGTCTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 7 0.27
21 4 0.15
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (20 bp):
TCTCTTTTTCTCTTTTTCAT
Found at i:9172547 original size:20 final size:20
Alignment explanation
Indices: 9172503--9172553 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
9172493 TCTCAATCTC
9172503 TTTTTTCTCTTTTTCATTCT
1 TTTTTTCTCTTTTTCATTCT
* *
9172523 CTTTTTCT-TTTTTGATTTCT
1 TTTTTTCTCTTTTTCA-TTCT
*
9172543 TTTTTTGTCTT
1 TTTTTTCTCTT
9172554 CCTTTCATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 6 0.24
20 17 0.68
21 2 0.08
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (20 bp):
TTTTTTCTCTTTTTCATTCT
Found at i:9177139 original size:27 final size:27
Alignment explanation
Indices: 9177109--9177286 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
9177099 ATATTGAGTC
* * * *
9177109 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
9177136 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9177163 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
9177191 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
9177218 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
9177245 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9177272 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
9177287 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:9177248 original size:82 final size:81
Alignment explanation
Indices: 9177130--9177285 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9177120 TGCTATATAA
* *
9177130 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
9177195 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
9177212 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
9177276 CACTTAGTGC
65 CACTTAGTGC
9177286 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:9179187 original size:28 final size:28
Alignment explanation
Indices: 9179131--9179184 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
9179121 ATAAATGTTT
*
9179131 TTTATTACATGTTATTAATGTGTCTAAG
1 TTTATTACATGCTATTAATGTGTCTAAG
*
9179159 TTTATTACATGCT-TTATTGTGTCTAA
1 TTTATTACATGCTATTAATGTGTCTAA
9179185 AGTCCAGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (28 bp):
TTTATTACATGCTATTAATGTGTCTAAG
Found at i:9187407 original size:19 final size:20
Alignment explanation
Indices: 9187383--9187422 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
9187373 TGAGCTGGTT
*
9187383 GGAGCTGGAA-TAAGCTAAA
1 GGAGCTGAAATTAAGCTAAA
*
9187402 GGAGCTGAAATTGAGCTAAA
1 GGAGCTGAAATTAAGCTAAA
9187422 G
1 G
9187423 TCGGCTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.40, C:0.10, G:0.33, T:0.17
Consensus pattern (20 bp):
GGAGCTGAAATTAAGCTAAA
Found at i:9193716 original size:33 final size:34
Alignment explanation
Indices: 9193665--9193739 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
9193655 AGATTTAAAC
9193665 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
9193699 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
9193732 AATTTAAT
1 AAATTAAT
9193740 AAACACACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:9193748 original size:33 final size:33
Alignment explanation
Indices: 9193665--9193755 Score: 103
Period size: 33 Copynumber: 2.7 Consensus size: 33
9193655 AGATTTAAAC
*
9193665 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTA-AAACACTTATTTAAGCTGAACTA
** *
9193699 AAATTAATTCTAACACTTATTTGAGCTGAACTA
1 AAATTAATTAAAACACTTATTTAAGCTGAACTA
* *
9193732 AATTTAA-TAAACACACTCATTTAA
1 AAATTAATTAAA-ACACTTATTTAA
9193756 TTTAATCCAG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 2 0.04
33 38 0.78
34 9 0.18
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.35
Consensus pattern (33 bp):
AAATTAATTAAAACACTTATTTAAGCTGAACTA
Found at i:9205853 original size:40 final size:40
Alignment explanation
Indices: 9205809--9206070 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
9205799 GCTCCTCGTT
* *
9205809 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
9205849 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
9205889 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
9205928 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
9205967 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
9206006 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
9206047 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
9206071 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:9207167 original size:14 final size:14
Alignment explanation
Indices: 9207148--9207174 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9207138 AGGATGAGCA
9207148 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
9207162 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
9207175 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:9209211 original size:14 final size:14
Alignment explanation
Indices: 9209192--9209218 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9209182 AGGATGAGCA
9209192 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
9209206 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
9209219 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:9224466 original size:18 final size:17
Alignment explanation
Indices: 9224443--9224481 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
9224433 CTCCTTTGGC
9224443 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
9224461 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
9224479 TCT
1 TCT
9224482 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:9227275 original size:17 final size:18
Alignment explanation
Indices: 9227242--9227277 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
9227232 GATTTTTTTA
*
9227242 TTTCACTTTTCTTTTCTT
1 TTTCACTTTTCTCTTCTT
9227260 TTTCA-TTTTCTCTTCTT
1 TTTCACTTTTCTCTTCTT
9227277 T
1 T
9227278 GTTTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCACTTTTCTCTTCTT
Found at i:9227303 original size:19 final size:18
Alignment explanation
Indices: 9227251--9227305 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
9227241 ATTTCACTTT
9227251 TCTTTTCTTTTTCATTT--
1 TCTTTTCTTTTTC-TTTCA
*
9227268 TCTCTTCTTTGTT-TTTCAA
1 TCTTTTCTTT-TTCTTTC-A
9227287 TCTTTTCTTTTTCTTTCA
1 TCTTTTCTTTTTCTTTCA
9227305 T
1 T
9227306 TTGGGTTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 3 0.10
17 9 0.29
18 6 0.19
19 13 0.42
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.71
Consensus pattern (18 bp):
TCTTTTCTTTTTCTTTCA
Found at i:9230773 original size:20 final size:19
Alignment explanation
Indices: 9230737--9230787 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
9230727 ACATGTATTA
9230737 AATTAAGACAAACTTAATT
1 AATTAAGACAAACTTAATT
* *
9230756 AATTCAAGACATATTTAATTT
1 AATT-AAGACAAACTTAA-TT
*
9230777 AACTAAGACAA
1 AATTAAGACAA
9230788 GACAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 17 0.65
21 5 0.19
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (19 bp):
AATTAAGACAAACTTAATT
Found at i:9233162 original size:19 final size:20
Alignment explanation
Indices: 9233129--9233167 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
9233119 GCAAGCTGAT
9233129 TTTAGCTCGGTTTTAGCTCC
1 TTTAGCTCGGTTTTAGCTCC
9233149 TTTAGCTC-GTTTTAGCTCC
1 TTTAGCTCGGTTTTAGCTCC
9233168 AACCAGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.10, C:0.26, G:0.18, T:0.46
Consensus pattern (20 bp):
TTTAGCTCGGTTTTAGCTCC
Found at i:9233194 original size:20 final size:20
Alignment explanation
Indices: 9233171--9233210 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9233161 TAGCTCCAAC
**
9233171 CAGCTCATTTGAGCTCAATT
1 CAGCTCATTCAAGCTCAATT
9233191 CAGCTCATTCAAGCTCAATT
1 CAGCTCATTCAAGCTCAATT
9233211 TAGTTTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (20 bp):
CAGCTCATTCAAGCTCAATT
Found at i:9244361 original size:28 final size:28
Alignment explanation
Indices: 9244321--9244619 Score: 517
Period size: 28 Copynumber: 10.7 Consensus size: 28
9244311 NNNNNNNNNN
*
9244321 AACTCGCACACTTAGTGCTATATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
9244349 AACTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244377 AATTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244405 AATTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244433 AATTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244461 AATTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
9244489 AACTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244517 AGCTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
*
9244545 AGCTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
9244573 AACTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA
* *
9244601 AGCTCGTACACTTAGTGCT
1 AACTCGCACACTTAGTGCT
9244620 GTACAATTTA
Statistics
Matches: 264, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 264 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
AACTCGCACACTTAGTGCTACATAATCA
Found at i:9247124 original size:12 final size:12
Alignment explanation
Indices: 9247107--9247131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9247097 CCTTATACAC
9247107 ATTACACATTGA
1 ATTACACATTGA
9247119 ATTACACATTGA
1 ATTACACATTGA
9247131 A
1 A
9247132 ATCAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATTACACATTGA
Found at i:9251993 original size:45 final size:45
Alignment explanation
Indices: 9251927--9252046 Score: 186
Period size: 45 Copynumber: 2.6 Consensus size: 45
9251917 TGACCTTTTG
9251927 ACCCATTTACGTACCAAAACCTATACCATTTCGTACATACACCAAA
1 ACCCATTT-CGTACCAAAACCTATACCATTTCGTACATACACCAAA
* * *
9251973 TCCCATTTTGTACCAAAACCTATACCATTTCGTACCTACACCAAA
1 ACCCATTTCGTACCAAAACCTATACCATTTCGTACATACACCAAA
* *
9252018 ACCCATTTCGTACCTAAACTTATACCATT
1 ACCCATTTCGTACCAAAACCTATACCATT
9252047 CCATAACTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
45 60 0.90
46 7 0.10
ACGTcount: A:0.35, C:0.33, G:0.04, T:0.28
Consensus pattern (45 bp):
ACCCATTTCGTACCAAAACCTATACCATTTCGTACATACACCAAA
Done.