Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 3 of 141
Found at i:675672 original size:42 final size:41
Alignment explanation
Indices: 675589--675675 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 41
675579 GACACAACCA
*
675589 TGTGTCACAAGTCAGAGAGTTACACGGTCTGGCATACGGCCG
1 TGTGTCACAAGTCAGAGAGTTACACAGTCTGGCATA-GGCCG
*
675631 TGTGTCACAAGTCATAGAGTTACACAGTCTGTGACAT-GGCCG
1 TGTGTCACAAGTCAGAGAGTTACACAGTCTG-G-CATAGGCCG
675673 TGT
1 TGT
675676 AACCTAACTC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 37 0.90
43 1 0.02
44 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
TGTGTCACAAGTCAGAGAGTTACACAGTCTGGCATAGGCCG
Found at i:677372 original size:54 final size:55
Alignment explanation
Indices: 677304--677431 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 55
677294 TGAGTTGGGC
* * *
677304 CACACGGCCGTGTCGCAGGCT-GTATGCTAGACCGTGTAACACTCTGAC-TAGTGA
1 CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAAT-A
* * * **
677358 CACACGACCATGTCGTAGG-TCGTGTGCTAGGTCGTGTAACACACTGACTTAATA
1 CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAATA
*
677412 CACATGGCCATGTCGCAGGC
1 CACACGGCCATGTCGCAGGC
677432 CATCTTTGGC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.02
54 56 0.93
55 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (55 bp):
CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAATA
Found at i:677994 original size:242 final size:242
Alignment explanation
Indices: 677569--678052 Score: 968
Period size: 242 Copynumber: 2.0 Consensus size: 242
677559 ACCTATTCAA
677569 AATGACATTAAACAAGCTCAAATCATGCTACTTCAACCATCTTAAGTGCCTAACCAATGTACCCT
1 AATGACATTAAACAAGCTCAAATCATGCTACTTCAACCATCTTAAGTGCCTAACCAATGTACCCT
677634 CATTGGTACCACAATTATACACACTTATACAACAATATAAATCATCAACCAAAACATGTCAATAC
66 CATTGGTACCACAATTATACACACTTATACAACAATATAAATCATCAACCAAAACATGTCAATAC
677699 ACAAAACTTAACTTCTAACCAATATGCCTATCATAGGCACCTCAAATCACAATAATTCTAGATAA
131 ACAAAACTTAACTTCTAACCAATATGCCTATCATAGGCACCTCAAATCACAATAATTCTAGATAA
677764 CATATTAATATAACATATGCTATAAACTTGAACCAAAAACATCTTCC
196 CATATTAATATAACATATGCTATAAACTTGAACCAAAAACATCTTCC
677811 AATGACATTAAACAAGCTCAAATCATGCTACTTCAACCATCTTAAGTGCCTAACCAATGTACCCT
1 AATGACATTAAACAAGCTCAAATCATGCTACTTCAACCATCTTAAGTGCCTAACCAATGTACCCT
677876 CATTGGTACCACAATTATACACACTTATACAACAATATAAATCATCAACCAAAACATGTCAATAC
66 CATTGGTACCACAATTATACACACTTATACAACAATATAAATCATCAACCAAAACATGTCAATAC
677941 ACAAAACTTAACTTCTAACCAATATGCCTATCATAGGCACCTCAAATCACAATAATTCTAGATAA
131 ACAAAACTTAACTTCTAACCAATATGCCTATCATAGGCACCTCAAATCACAATAATTCTAGATAA
678006 CATATTAATATAACATATGCTATAAACTTGAACCAAAAACATCTTCC
196 CATATTAATATAACATATGCTATAAACTTGAACCAAAAACATCTTCC
678053 TTCATTCACA
Statistics
Matches: 242, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
242 242 1.00
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.26
Consensus pattern (242 bp):
AATGACATTAAACAAGCTCAAATCATGCTACTTCAACCATCTTAAGTGCCTAACCAATGTACCCT
CATTGGTACCACAATTATACACACTTATACAACAATATAAATCATCAACCAAAACATGTCAATAC
ACAAAACTTAACTTCTAACCAATATGCCTATCATAGGCACCTCAAATCACAATAATTCTAGATAA
CATATTAATATAACATATGCTATAAACTTGAACCAAAAACATCTTCC
Found at i:678641 original size:37 final size:37
Alignment explanation
Indices: 678575--678669 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
678565 AGTACAAAAG
*
678575 TAATCCAACCGA-AACACGCCAAAAGCTCATAAGAGC
1 TAATCCAACTGATAACACGCCAAAAGCTCATAAGAGC
* *
678611 TAATCCAACTGATAACATGCCAAACA-CTCATAATAGC
1 TAATCCAACTGATAACACGCCAAA-AGCTCATAAGAGC
*
678648 TAATCCCACTGATAACACGCCA
1 TAATCCAACTGATAACACGCCA
678670 CGACACTAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
36 11 0.21
37 40 0.77
38 1 0.02
ACGTcount: A:0.42, C:0.31, G:0.11, T:0.17
Consensus pattern (37 bp):
TAATCCAACTGATAACACGCCAAAAGCTCATAAGAGC
Found at i:683383 original size:27 final size:27
Alignment explanation
Indices: 683349--683472 Score: 140
Period size: 27 Copynumber: 4.6 Consensus size: 27
683339 TAAATTGTAC
* * *
683349 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
683376 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
683404 AGCACTAAGTGTACGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
683431 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
683458 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
683473 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 61 0.73
28 22 0.27
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:683411 original size:55 final size:54
Alignment explanation
Indices: 683349--683472 Score: 149
Period size: 55 Copynumber: 2.3 Consensus size: 54
683339 TAAATTGTAC
* * *
683349 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATAT
* * ** * *
683404 AGCACTAAGTGTACGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
*
683458 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
683473 GACTCAATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 21 0.36
55 37 0.64
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:693170 original size:40 final size:40
Alignment explanation
Indices: 693087--693389 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
693077 TTGAATGCTG
* * * * * *
693087 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
693127 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
693167 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
693207 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
693247 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
693287 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
693327 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
693366 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
693390 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:695235 original size:12 final size:12
Alignment explanation
Indices: 695218--695248 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
695208 GCCGTGTCTC
695218 GCACACGGCCAA
1 GCACACGGCCAA
*
695230 GCACACGGGCAA
1 GCACACGGCCAA
695242 GCACACG
1 GCACACG
695249 CCCATGTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.29, T:0.00
Consensus pattern (12 bp):
GCACACGGCCAA
Found at i:695802 original size:5 final size:6
Alignment explanation
Indices: 695787--695811 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
695777 AAATTTTGAA
695787 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
695812 CAAACAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:698508 original size:9 final size:10
Alignment explanation
Indices: 698484--698508 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
698474 TCCCATAATT
698484 ATTTTTTACA
1 ATTTTTTACA
698494 ATTTTTTACA
1 ATTTTTTACA
698504 ATTTT
1 ATTTT
698509 CCAAAGTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTACA
Found at i:698854 original size:23 final size:22
Alignment explanation
Indices: 698811--698854 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
698801 TTCTAAGTCG
698811 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
698834 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
698855 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:698963 original size:45 final size:45
Alignment explanation
Indices: 698899--698987 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
698889 AACAGATACT
* *
698899 CGGTGGATTCAGAACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
*
698944 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGT
698988 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:699056 original size:51 final size:50
Alignment explanation
Indices: 698998--699184 Score: 241
Period size: 51 Copynumber: 3.7 Consensus size: 50
698988 TCAGTTCACA
*
698998 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCCGGTACACG
* * * * * *
699049 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCTGGTACACA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATCCGGTACACG
* * *
699100 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCCGGTACACG
*
699150 TAGTAGCCTACACATAGTACTACACATGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
699185 CACTTTCACT
Statistics
Matches: 115, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 40 0.35
51 71 0.62
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCCGGTACACG
Found at i:699204 original size:101 final size:101
Alignment explanation
Indices: 698994--699180 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
698984 ATGTTCAGTT
* *
698994 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTA
* **
699059 CACATAGTACTACACACGTGATCGAAACTATCTGGTA
65 CACATAGTACTACACACGTGATCCAAACTATCACGTA
* * *
699096 CACATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACATGTAGTAGCCTA
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTA
*
699160 CACATAGTACTACACATGTGA
65 CACATAGTACTACACACGTGA
699181 CCATCACTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
100 4 0.05
101 38 0.49
102 36 0.46
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTAC
ACATAGTACTACACACGTGATCCAAACTATCACGTA
Found at i:721046 original size:124 final size:124
Alignment explanation
Indices: 720856--721110 Score: 388
Period size: 124 Copynumber: 2.1 Consensus size: 124
720846 AAATAGTGGG
** * ** *
720856 AAATCGCTTCTACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGTGGTCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGATT
*
720921 TCGCTACAG-TGGTCATGTAAGAAATAATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACG-TTTCTGAGCAAATAGTATA
720980 AAATCGCTGATACCAGGATGCT-ATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGAT
1 AAATCGCTGATACCAGGATGCTAAT-TGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGAT
* * *
721044 TTCACTACAGTTGGTCATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTGTC
65 TTCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
721104 AAATCGC
1 AAATCGC
721111 GCCCTCGTGG
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
123 2 0.02
124 88 0.74
125 29 0.24
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGATT
TCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:724142 original size:29 final size:28
Alignment explanation
Indices: 724101--724783 Score: 498
Period size: 28 Copynumber: 25.2 Consensus size: 28
724091 AATCAGGGTA
* *
724101 AGGGTTTTCAATTAAATTAGGTTAGAGTT
1 AGGGTTTTTAATTAAATTAAGTTAG-GTT
* *
724130 AGGGATTTTAATTAAGA-TAGGTTAGGGTT
1 AGGGTTTTTAATTAA-ATTAAGTTA-GGTT
* * *
724159 AGGG-TTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
*
724188 AGGGTTTTTAACT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
**
724211 AGGGTTTTTAATTAAATTTGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
* * *
724240 AGGGATTTTAATTAAAATAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
* * * *
724269 AGGG-CTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
*
724298 AGGGTTTTTTAATTAAATTAAATTAGGTT
1 AGGG-TTTTTAATTAAATTAAGTTAGGTT
*
724327 AGGG--TTT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
724350 AGGGTTTTTAATTAAAATAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
*
724379 AGGGTTTTTAACT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724402 AGGGATTTTAATT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
724425 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
724453 AGGGTTTTTAATTAAATTAAATTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
724481 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
724509 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724537 AGGGTTTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724565 AGGG--TTT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724588 AGGG-TTTTAATTTAAATTAGGTTAGGGTT
1 AGGGTTTTTAA-TTAAATTAAGTTA-GGTT
* * *
724617 AGGG-TTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
* *
724646 AGGGTTAGGGTTT--TT-AACTAAATTAGGTT
1 AGGGTT----TTTAATTAAATTAAGTTAGGTT
* *
724675 AGGGTTTTTAATTAAATTAAATTAGTTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
724703 AGGGTTTTTAATT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724726 AGGGTTTTTAATTAAGTTAAGTTA-G--
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
724751 A--GTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
724778 AGGGTT
1 AGGGTT
724784 AGGGTTTTCA
Statistics
Matches: 555, Mismatches: 48, Indels: 102
0.79 0.07 0.14
Matches are distributed among these distances:
23 124 0.22
24 15 0.03
25 12 0.02
26 7 0.01
27 14 0.03
28 179 0.32
29 170 0.31
30 24 0.04
31 6 0.01
32 1 0.00
34 3 0.01
ACGTcount: A:0.32, C:0.01, G:0.24, T:0.43
Consensus pattern (28 bp):
AGGGTTTTTAATTAAATTAAGTTAGGTT
Found at i:724236 original size:81 final size:81
Alignment explanation
Indices: 724122--724297 Score: 239
Period size: 81 Copynumber: 2.2 Consensus size: 81
724112 TTAAATTAGG
* *
724122 TTAGAGTTAGGGATTTTAATTAAGATAGGTTAGGGTTAGGG-TTTTCATGTAAAATAGGTTAGGG
1 TTAG-GTTAGGGTTTTTAATTAAGATAGGTTAGGGTTAGGGATTTTAAT-TAAAATAGGTTAGGG
* *
724186 TTAGGGTTTTTAACTAAA
64 TTAGGGCTTTCAACTAAA
*
724204 TTAGGTTAGGGTTTTTAATTAA-ATTTGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGT
1 TTAGGTTAGGGTTTTTAATTAAGA-TAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGT
**
724268 TAGGGCTTTCATGTAAA
65 TAGGGCTTTCAACTAAA
*
724285 ATAGGTTAGGGTT
1 TTAGGTTAGGGTT
724298 AGGGTTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.01
81 73 0.87
82 10 0.12
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.40
Consensus pattern (81 bp):
TTAGGTTAGGGTTTTTAATTAAGATAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTT
AGGGCTTTCAACTAAA
Found at i:724262 original size:23 final size:23
Alignment explanation
Indices: 724184--724777 Score: 263
Period size: 23 Copynumber: 22.4 Consensus size: 23
724174 AATAGGTTAG
*
724184 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
724207 GGTTAGGGTTTTTAATTAAATTTGGTTA
1 GGTTAGGGTTTTTAATTAAA-----TTA
* *
724235 GGGTTAGGGATTTTAATTAAAATA
1 -GGTTAGGGTTTTTAATTAAATTA
*
724259 GGTTAGGGTTAGGGCTTTCATGTAAAATAGGTTA
1 GGTTAGGGTT-----TTTAAT-T-AA--A--TTA
724293 GGGTTAGGGTTTTTTAATTAAATTAAATTA
1 -GGTTAGGG-TTTTTAATTAA-----ATTA
*
724323 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
724346 AGTTAGGGTTTTTAATTAAAATAGGTTA
1 GGTTAGGGTTTTTAATT--AA-A--TTA
*
724374 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
*
724398 GGTTAGGGATTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
724421 GGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
724449 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
724477 AGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
724505 GGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
724533 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
724561 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
724584 AGTTAGGG-TTTTAATTTAAATTA
1 GGTTAGGGTTTTTAA-TTAAATTA
* *
724607 GGTTAGGGTTAGGGTTTTCATGTAAAATA
1 GGTTAGGG-T----TTTTAAT-TAAATTA
* * * *
724636 GGTTAGGGTTAGGGTTAGGGTTTTTAACTA
1 GGTTAGGGTT---TTTA----ATTAAATTA
**
724666 AATTAGGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAG-----GGTTTTT-----AATTAAATTA
*
724699 GTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
*
724722 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
724745 AGTTAGAGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
724768 GGTTAGGGTT
1 GGTTAGGGTT
724778 AGGGTTAGGG
Statistics
Matches: 466, Mismatches: 47, Indels: 116
0.74 0.07 0.18
Matches are distributed among these distances:
22 6 0.01
23 165 0.35
24 8 0.02
25 4 0.01
26 4 0.01
27 6 0.01
28 156 0.33
29 64 0.14
30 15 0.03
31 6 0.01
32 5 0.01
33 10 0.02
34 2 0.00
35 12 0.03
36 2 0.00
37 1 0.00
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.44
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:724649 original size:35 final size:35
Alignment explanation
Indices: 724607--724680 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
724597 ATTTAAATTA
**
724607 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAG
1 GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
* *
724642 GGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
724677 GGTT
1 GGTT
724681 TTTAATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.03, G:0.34, T:0.39
Consensus pattern (35 bp):
GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
Found at i:725054 original size:22 final size:22
Alignment explanation
Indices: 725029--725072 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
725019 TTTTTAATTA
*
725029 AATTAAGTTAGGTTAGGGTTTT
1 AATTAAGTTAAGTTAGGGTTTT
725051 AATTAAGTTAAGTTAGGGTTTT
1 AATTAAGTTAAGTTAGGGTTTT
725073 TAACGGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (22 bp):
AATTAAGTTAAGTTAGGGTTTT
Found at i:725061 original size:27 final size:28
Alignment explanation
Indices: 724996--725067 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
724986 GGAAATGGAT
*
724996 ATTAAATTAGGTTAGGGTAAGGGTTTTTA
1 ATTAAATTAAGTTA-GGTAAGGGTTTTTA
*
725025 ATTAAATTAAGTTAGGTTAGGG-TTTTA
1 ATTAAATTAAGTTAGGTAAGGGTTTTTA
*
725052 ATTAAGTTAAGTTAGG
1 ATTAAATTAAGTTAGG
725068 GTTTTTAACG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.50
28 7 0.17
29 13 0.32
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (28 bp):
ATTAAATTAAGTTAGGTAAGGGTTTTTA
Found at i:725845 original size:121 final size:120
Alignment explanation
Indices: 725630--725871 Score: 457
Period size: 121 Copynumber: 2.0 Consensus size: 120
725620 GTGGTGCTCG
725630 TCAAACACCTCAGGGTCCGCAAGGATCGGTTGTCTACATCCAAACTGTCGTAGGACTCTGTCTGT
1 TCAAACACCTCAGGGTCCGCAAGGATCGGTTGTCTACATCCAAACTGTCGTAGGACTCTGTCTGT
725695 CTGGTGGGGCTCCACAGTTGCATAGTTGATCAACACCACTTTCACGTGCCAAGCA
66 CTGGTGGGGCTCCACAGTTGCATAGTTGATCAACACCACTTTCACGTGCCAAGCA
* *
725750 TNCAAACACCTCAGGGTCCGCAGGGATCGGTTGTCTACATCCAAATTGTCGTAGGACTCTGTCTG
1 T-CAAACACCTCAGGGTCCGCAAGGATCGGTTGTCTACATCCAAACTGTCGTAGGACTCTGTCTG
725815 TCTGGTGGGGCTCCACAGTTGCATAGTTGATCAACACCACTTTCACGTGCCAAGCA
65 TCTGGTGGGGCTCCACAGTTGCATAGTTGATCAACACCACTTTCACGTGCCAAGCA
725871 T
1 T
725872 TCAGATTTTG
Statistics
Matches: 119, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
120 1 0.01
121 118 0.99
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (120 bp):
TCAAACACCTCAGGGTCCGCAAGGATCGGTTGTCTACATCCAAACTGTCGTAGGACTCTGTCTGT
CTGGTGGGGCTCCACAGTTGCATAGTTGATCAACACCACTTTCACGTGCCAAGCA
Found at i:726971 original size:22 final size:22
Alignment explanation
Indices: 726941--726982 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
726931 ATTTGGAGAT
*
726941 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
726963 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
726983 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:726990 original size:30 final size:30
Alignment explanation
Indices: 726954--727012 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
726944 TTGAAGGAAA
*
726954 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
726984 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
727013 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:727003 original size:52 final size:51
Alignment explanation
Indices: 726932--727034 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
726922 TTAATATGGA
* * *
726932 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAA-TTGAGAG
* *
726983 TTTGAGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAACGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
727035 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.32, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
Found at i:727008 original size:22 final size:22
Alignment explanation
Indices: 726983--727053 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
726973 AATTTGAGAG
*
726983 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
727005 TTTGAGAGAATTTTTGAACGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
727028 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
727049 ATTGA
1 TTTGA
727054 TATTGAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 38 0.83
23 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:733281 original size:23 final size:25
Alignment explanation
Indices: 733249--733311 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
733239 TTTGCCCTCA
733249 TCTCTGCCCTCTGCTGGTTCTTTG-
1 TCTCTGCCCTCTGCTGGTTCTTTGT
*
733273 T-TCTGCCCTTTGCTGGTTCTTTGTT
1 TCTCTGCCCTCTGCTGGTTCTTTG-T
733298 TCTCTGCCCTCTGC
1 TCTCTGCCCTCTGC
733312 CGGTGAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 21 0.62
24 1 0.03
25 1 0.03
26 11 0.32
ACGTcount: A:0.00, C:0.33, G:0.19, T:0.48
Consensus pattern (25 bp):
TCTCTGCCCTCTGCTGGTTCTTTGT
Found at i:733428 original size:41 final size:41
Alignment explanation
Indices: 733371--733455 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
733361 TTGTCTGGGA
*
733371 TTGATTTTCAATTTCCCTGCCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
733412 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
733453 TTG
1 TTG
733456 GCCTTGGAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.08, C:0.31, G:0.14, T:0.47
Consensus pattern (41 bp):
TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
Found at i:735376 original size:23 final size:25
Alignment explanation
Indices: 735344--735406 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
735334 TTTGCCCTCA
735344 TCTCTGCCCTCTGCTGGTTCTTTG-
1 TCTCTGCCCTCTGCTGGTTCTTTGT
*
735368 T-TCTGCCCTTTGCTGGTTCTTTGTT
1 TCTCTGCCCTCTGCTGGTTCTTTG-T
735393 TCTCTGCCCTCTGC
1 TCTCTGCCCTCTGC
735407 CGGTGAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 21 0.62
24 1 0.03
25 1 0.03
26 11 0.32
ACGTcount: A:0.00, C:0.33, G:0.19, T:0.48
Consensus pattern (25 bp):
TCTCTGCCCTCTGCTGGTTCTTTGT
Found at i:735523 original size:41 final size:41
Alignment explanation
Indices: 735466--735550 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
735456 TTGTCTGGGA
*
735466 TTGATTTTCAATTTCCCTGCCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
735507 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
735548 TTG
1 TTG
735551 GCCTTGGAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.08, C:0.31, G:0.14, T:0.47
Consensus pattern (41 bp):
TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
Found at i:738092 original size:13 final size:13
Alignment explanation
Indices: 738074--738113 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
738064 AAACACTCAA
738074 ATTTCTCAAAAGC
1 ATTTCTCAAAAGC
738087 ATTTCTCAAAAGC
1 ATTTCTCAAAAGC
*
738100 ACTTCTCAAAAGC
1 ATTTCTCAAAAGC
738113 A
1 A
738114 ATGAAGAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTTCTCAAAAGC
Found at i:744976 original size:102 final size:102
Alignment explanation
Indices: 744797--745242 Score: 585
Period size: 102 Copynumber: 4.4 Consensus size: 102
744787 TATCGATGAA
* *
744797 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
*
744862 TAAATGAATGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAATGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
* *
744899 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGATCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
*
744964 TAAATGAATGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAATGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
* *
745001 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGATCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* * * *
745066 TAAGTGAAGGCTACTATGTATACCGAAAAGCTTTGGT
66 TAAATGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
* * * * *** * *
745103 CACGTGTGTAGTACTATGTGAAGGCTATTATGTGAACCG-TAAAACTTGATCACGTGCGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
** * * * *
745167 TATGTGAAGGCTACTACT-TGAACCGTA-AAAC-TTGAT
66 TAAATGAAGGCTAC-AATGTGTACCG-AGAAGCTTTGGT
* *
745203 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGA
745243 ATGATAAAAG
Statistics
Matches: 310, Mismatches: 31, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
100 39 0.13
101 41 0.13
102 230 0.74
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
TAAATGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
Found at i:745169 original size:50 final size:50
Alignment explanation
Indices: 744797--745232 Score: 333
Period size: 51 Copynumber: 8.6 Consensus size: 50
744787 TATCGATGAA
* * * * *** *
744797 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
* ** * * * * *
744848 CACATGTGTAGTACTAAATGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTA-AAAC-TTGAT
* * ** * ***
744899 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
* ** * * * * *
744950 CACATGTGTAGTACTAAATGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTA-AAAC-TTGAT
* * ** * ***
745001 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
* * *
745052 CACATGTGTAGTACTAAGTGAAGGCTACTATGT-ATACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGA-ACCGTAAAA-C-TTGAT
*
745103 CACGTGTGTAGTACTATGTGAAGGCTATTATGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTAAAACTTGAT
*
745153 CACGTGCGTAGTACTATGTGAAGGCTACTACT-TGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTA-TGTGAACCGTAAAACTTGAT
745203 CACGTGTGTAGTACTATGTGAAGGCTACTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTA
745233 CGTGTATCGA
Statistics
Matches: 297, Mismatches: 74, Indels: 29
0.74 0.19 0.07
Matches are distributed among these distances:
49 5 0.02
50 84 0.28
51 197 0.66
52 9 0.03
53 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTAAAACTTGAT
Found at i:748945 original size:43 final size:43
Alignment explanation
Indices: 748897--748983 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
748887 AGGGTAAATC
* * * *
748897 CAACAACCCATGTTTATCTTTTCATCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
*
748940 CAACAACCCAAGATTATCTTGTCCTATTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
748983 C
1 C
748984 GAGGATAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.49
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
Found at i:751068 original size:18 final size:17
Alignment explanation
Indices: 751045--751078 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
751035 TTCATTCAAT
751045 AACATAAACATATCATAA
1 AACATAAACATA-CATAA
*
751063 AACATACACATACATA
1 AACATAAACATACATA
751079 TCATCTCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (17 bp):
AACATAAACATACATAA
Found at i:751355 original size:55 final size:55
Alignment explanation
Indices: 751296--751404 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
751286 GTCCTCACCG
* * *
751296 ATGTAACTCTTTAAGTAGGTTCACACGGCCATGTCACACGCCCGTGTGCCAGGCC
1 ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCC
* * ** *
751351 ATGTAACTCTCTGAGTAGGGTCTCACGGCCATGTTGCAAGTCCGTGTGCCAGGC
1 ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGC
751405 TGTGCAACTC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (55 bp):
ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCC
Found at i:751414 original size:55 final size:55
Alignment explanation
Indices: 751300--751421 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
751290 TCACCGATGT
* * * * *
751300 AACTCTTTAAGTAGGTTCACACGGCCATGTCACACGCCCGTGTGCCAGGCCATGT
1 AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
* ** * **
751355 AACTCTCTGAGTAGGGTCTCACGGCCATGTTGCAAGTCCGTGTGCCAGGCTGTGC
1 AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
751410 AACTCTCTGAGT
1 AACTCTCTGAGT
751422 TGCCCCACAC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (55 bp):
AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
Found at i:753669 original size:9 final size:9
Alignment explanation
Indices: 753655--753680 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
753645 TTTTCATAAT
753655 CTTTTAGCC
1 CTTTTAGCC
753664 CTTTTAGCC
1 CTTTTAGCC
753673 CTTTTAGC
1 CTTTTAGC
753681 TAATAGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.46
Consensus pattern (9 bp):
CTTTTAGCC
Found at i:756006 original size:29 final size:29
Alignment explanation
Indices: 755964--756034 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
755954 NNNNNNNCGT
*
755964 ACACTTAGTGCCATGTACTTT-AAACTCGC
1 ACACTTAGTGCCATGCA-TTTCAAACTCGC
**
755993 ACACTTAGTGCCATGCATTTCAAGTTCGC
1 ACACTTAGTGCCATGCATTTCAAACTCGC
*
756022 ACACCTAGTGCCA
1 ACACTTAGTGCCA
756035 ATCTCACAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
ACACTTAGTGCCATGCATTTCAAACTCGC
Found at i:762232 original size:21 final size:21
Alignment explanation
Indices: 762208--762254 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
762198 GAAAGAAAAA
762208 ACAAACACTTTCTTAAAGTAG
1 ACAAACACTTTCTTAAAGTAG
762229 ACAAACACTTTCTTAAAGTAG
1 ACAAACACTTTCTTAAAGTAG
*
762250 CCAAA
1 ACAAA
762255 GCCCTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (21 bp):
ACAAACACTTTCTTAAAGTAG
Found at i:762262 original size:21 final size:21
Alignment explanation
Indices: 762208--762263 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
762198 GAAAGAAAAA
*
762208 ACAAACACTTTCTTAAAGTAG
1 ACAAACACCTTCTTAAAGTAG
*
762229 ACAAACACTTTCTTAAAGTAG
1 ACAAACACCTTCTTAAAGTAG
*
762250 CCAAAGC-CCTTCTT
1 ACAAA-CACCTTCTT
762264 TTTCAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (21 bp):
ACAAACACCTTCTTAAAGTAG
Found at i:771868 original size:21 final size:21
Alignment explanation
Indices: 771842--771897 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
771832 AACAACAGTG
* *
771842 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTATA
*
771863 GCGGTGAGATTGGATACTATA
1 GCGGTGAGATTAGATACTATA
*
771884 GGGGTGAGATTAGA
1 GCGGTGAGATTAGA
771898 AATAATGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:772176 original size:35 final size:34
Alignment explanation
Indices: 772065--772183 Score: 97
Period size: 35 Copynumber: 3.5 Consensus size: 34
772055 ATAATTAAAA
772065 TATTAAAATTATA--TACAATAAAATTAAAATAT
1 TATTAAAATTATATTTACAATAAAATTAAAATAT
* * * *
772097 T-TTTAAATTATATTCATAATAACATGTCAAAATAT
1 TATTAAAATTATATTTACAATAAAAT-T-AAAATAT
772132 T-TTACAAATTATATTTA-AATAAAATAATAAAATAT
1 TATTA-AAATTATATTTACAATAAAAT--TAAAATAT
*
772167 ATATT-AAATTGTATTTA
1 -TATTAAAATTATATTTA
772184 TAGTAAATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
31 10 0.14
32 1 0.01
33 8 0.11
34 1 0.01
35 35 0.50
36 13 0.19
37 2 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (34 bp):
TATTAAAATTATATTTACAATAAAATTAAAATAT
Found at i:772234 original size:17 final size:18
Alignment explanation
Indices: 772201--772234 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
772191 TTTATAAATA
*
772201 AAAATTATAATTCTATTG
1 AAAATTATAATTATATTG
772219 AAAATTA-AATTATATT
1 AAAATTATAATTATATT
772235 AAATAATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AAAATTATAATTATATTG
Found at i:777171 original size:24 final size:22
Alignment explanation
Indices: 777149--777196 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
777139 ATAATATATG
*
777149 TAAAGAAAATGGAAATAACATA
1 TAAAAAAAATGGAAATAACATA
*
777171 TAAAAAAAATGGAAA-AGCATA
1 TAAAAAAAATGGAAATAACATA
777192 TAAAA
1 TAAAA
777197 TCTAAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.67, C:0.04, G:0.12, T:0.17
Consensus pattern (22 bp):
TAAAAAAAATGGAAATAACATA
Found at i:779998 original size:518 final size:518
Alignment explanation
Indices: 779021--780056 Score: 2072
Period size: 518 Copynumber: 2.0 Consensus size: 518
779011 ATTATTTGAT
779021 GTTTTTGTGTCGAAAGTTAAAAAGATTTTAAAATAAGCTTGAATGATGAAATTTGCAAAAGGATA
1 GTTTTTGTGTCGAAAGTTAAAAAGATTTTAAAATAAGCTTGAATGATGAAATTTGCAAAAGGATA
779086 ACCAATTGTTCAAGTCATGTAAAGAAATCGAATCCCAATACGTTAGGGTACAATTCCTCATAATT
66 ACCAATTGTTCAAGTCATGTAAAGAAATCGAATCCCAATACGTTAGGGTACAATTCCTCATAATT
779151 CCCCAAACTTGAGTATCACTTTTATTTTATACGAAAATCTTCATTTCGAGAAAGTAACATGCCAC
131 CCCCAAACTTGAGTATCACTTTTATTTTATACGAAAATCTTCATTTCGAGAAAGTAACATGCCAC
779216 ACCCAATACGTTAGGGCACAACAAGTTAAGTTCCCAAAAATGATTTTTATGCATTTTGAATAAAA
196 ACCCAATACGTTAGGGCACAACAAGTTAAGTTCCCAAAAATGATTTTTATGCATTTTGAATAAAA
779281 AATATTCTCGGTCATTTAAGATTGACAAAGAAAATCGGAACCCAATACGTTAGGGCTCAATTTCC
261 AATATTCTCGGTCATTTAAGATTGACAAAGAAAATCGGAACCCAATACGTTAGGGCTCAATTTCC
779346 CTCGAAAATCCCAAACTTCCAATAATGCTTTTATTAAAAAAAAAACCCTTTAGTCAAGAAGATAA
326 CTCGAAAATCCCAAACTTCCAATAATGCTTTTATTAAAAAAAAAACCCTTTAGTCAAGAAGATAA
779411 CTTTGATGAATGGTAAAAACCAAAATATATTTTCAAAAAGGGTATGCTAAAAAAAATAATGTACA
391 CTTTGATGAATGGTAAAAACCAAAATATATTTTCAAAAAGGGTATGCTAAAAAAAATAATGTACA
779476 ATATGATACAAAACTTTAATGTAAAACACATATGAGTACATATTTACAAAATATATATACAGG
456 ATATGATACAAAACTTTAATGTAAAACACATATGAGTACATATTTACAAAATATATATACAGG
779539 GTTTTTGTGTCGAAAGTTAAAAAGATTTTAAAATAAGCTTGAATGATGAAATTTGCAAAAGGATA
1 GTTTTTGTGTCGAAAGTTAAAAAGATTTTAAAATAAGCTTGAATGATGAAATTTGCAAAAGGATA
779604 ACCAATTGTTCAAGTCATGTAAAGAAATCGAATCCCAATACGTTAGGGTACAATTCCTCATAATT
66 ACCAATTGTTCAAGTCATGTAAAGAAATCGAATCCCAATACGTTAGGGTACAATTCCTCATAATT
779669 CCCCAAACTTGAGTATCACTTTTATTTTATACGAAAATCTTCATTTCGAGAAAGTAACATGCCAC
131 CCCCAAACTTGAGTATCACTTTTATTTTATACGAAAATCTTCATTTCGAGAAAGTAACATGCCAC
779734 ACCCAATACGTTAGGGCACAACAAGTTAAGTTCCCAAAAATGATTTTTATGCATTTTGAATAAAA
196 ACCCAATACGTTAGGGCACAACAAGTTAAGTTCCCAAAAATGATTTTTATGCATTTTGAATAAAA
779799 AATATTCTCGGTCATTTAAGATTGACAAAGAAAATCGGAACCCAATACGTTAGGGCTCAATTTCC
261 AATATTCTCGGTCATTTAAGATTGACAAAGAAAATCGGAACCCAATACGTTAGGGCTCAATTTCC
779864 CTCGAAAATCCCAAACTTCCAATAATGCTTTTATTAAAAAAAAAACCCTTTAGTCAAGAAGATAA
326 CTCGAAAATCCCAAACTTCCAATAATGCTTTTATTAAAAAAAAAACCCTTTAGTCAAGAAGATAA
779929 CTTTGATGAATGGTAAAAACCAAAATATATTTTCAAAAAGGGTATGCTAAAAAAAATAATGTACA
391 CTTTGATGAATGGTAAAAACCAAAATATATTTTCAAAAAGGGTATGCTAAAAAAAATAATGTACA
779994 ATATGATACAAAACTTTAATGTAAAACACATATGAGTACATATTTACAAAATATATATACAGG
456 ATATGATACAAAACTTTAATGTAAAACACATATGAGTACATATTTACAAAATATATATACAGG
780057 TACAATATAC
Statistics
Matches: 518, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
518 518 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.30
Consensus pattern (518 bp):
GTTTTTGTGTCGAAAGTTAAAAAGATTTTAAAATAAGCTTGAATGATGAAATTTGCAAAAGGATA
ACCAATTGTTCAAGTCATGTAAAGAAATCGAATCCCAATACGTTAGGGTACAATTCCTCATAATT
CCCCAAACTTGAGTATCACTTTTATTTTATACGAAAATCTTCATTTCGAGAAAGTAACATGCCAC
ACCCAATACGTTAGGGCACAACAAGTTAAGTTCCCAAAAATGATTTTTATGCATTTTGAATAAAA
AATATTCTCGGTCATTTAAGATTGACAAAGAAAATCGGAACCCAATACGTTAGGGCTCAATTTCC
CTCGAAAATCCCAAACTTCCAATAATGCTTTTATTAAAAAAAAAACCCTTTAGTCAAGAAGATAA
CTTTGATGAATGGTAAAAACCAAAATATATTTTCAAAAAGGGTATGCTAAAAAAAATAATGTACA
ATATGATACAAAACTTTAATGTAAAACACATATGAGTACATATTTACAAAATATATATACAGG
Found at i:780448 original size:26 final size:26
Alignment explanation
Indices: 780417--780489 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
780407 ATATATGTGT
*
780417 GAAAATCTGTATGTA-TATAATATAAA
1 GAAAAT-TGTATGTATTATAAAATAAA
*
780443 GAAAA-TGTATGAATTATAAAATAAA
1 GAAAATTGTATGTATTATAAAATAAA
*
780468 -AAAATGTATATGTATTATAAAA
1 GAAAAT-TGTATGTATTATAAAA
780490 CGTATGTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 11 0.28
25 10 0.25
26 19 0.47
ACGTcount: A:0.55, C:0.01, G:0.11, T:0.33
Consensus pattern (26 bp):
GAAAATTGTATGTATTATAAAATAAA
Found at i:780451 original size:24 final size:24
Alignment explanation
Indices: 780424--780476 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
780414 TGTGAAAATC
* *
780424 TGTATGTA-TATAATATAAAGAAAA
1 TGTATGAATTATAAAATAAA-AAAA
780448 TGTATGAATTATAAAATAAAAAAA
1 TGTATGAATTATAAAATAAAAAAA
780472 TGTAT
1 TGTAT
780477 ATGTATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (24 bp):
TGTATGAATTATAAAATAAAAAAA
Found at i:782323 original size:50 final size:50
Alignment explanation
Indices: 782261--782469 Score: 150
Period size: 50 Copynumber: 4.2 Consensus size: 50
782251 GATCTGTAAT
* * * *
782261 CTTCAATTTGTTCAACTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAACTGCAATGCTAAGGAAACAAGATCCGCCGTCGTAG
* * ** ** * *
782311 CTTCAATCTGTTCCATTGCACCGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGCTAAGGAAACAAGATCCGCCGTCGTAG
* * * * * * *
782361 CTTCAATCTTTTTAATTGCAAT-ATCAGGGAAACCAGATCCGCCATCGTAG
1 CTTCAATCTGTTCAACTGCAATGCT-AAGGAAACAAGATCCGCCGTCGTAG
* * ** * ** * *
782411 CTCCAATCTATTCTGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGCTAAGGAAACAAGATCCGCCGTCGTAG
782461 CTTCAATCT
1 CTTCAATCT
782470 TTTTACTTTT
Statistics
Matches: 116, Mismatches: 41, Indels: 4
0.72 0.25 0.02
Matches are distributed among these distances:
49 1 0.01
50 114 0.98
51 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (50 bp):
CTTCAATCTGTTCAACTGCAATGCTAAGGAAACAAGATCCGCCGTCGTAG
Found at i:782437 original size:100 final size:100
Alignment explanation
Indices: 782277--782474 Score: 315
Period size: 100 Copynumber: 2.0 Consensus size: 100
782267 TTTGTTCAAC
* * * * * *
782277 TGCAATGTTAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCATTGCACCGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTCCAATCTATTCCACTGCACCGCTAAGGAA
782342 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
** *
782377 TGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTCCAATCTATTCTGCTGCACTGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTCCAATCTATTCCACTGCACCGCTAAGGAA
782442 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTA
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTA
782475 CTTTTCAACC
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (100 bp):
TGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTCCAATCTATTCCACTGCACCGCTAAGGAA
GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
Found at i:784998 original size:23 final size:23
Alignment explanation
Indices: 784972--785018 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
784962 GGCCATTTTC
*
784972 CCATTCAAAGCAGTTGATTCCAT
1 CCATTCAAAGCAGTTGACTCCAT
784995 CCATTCAAAGCAGTTGACTCCAT
1 CCATTCAAAGCAGTTGACTCCAT
785018 C
1 C
785019 ATATACTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (23 bp):
CCATTCAAAGCAGTTGACTCCAT
Found at i:790240 original size:20 final size:20
Alignment explanation
Indices: 790215--790254 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
790205 TAAAGGTTTT
*
790215 TAATGCATATGATGTGATGC
1 TAATGCATATGATGCGATGC
790235 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
790255 ATGAGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (20 bp):
TAATGCATATGATGCGATGC
Found at i:798411 original size:25 final size:24
Alignment explanation
Indices: 798379--798427 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
798369 TATAAATATA
798379 ATATATAAATAAACTATGAGAAAAT
1 ATATATAAATAAA-TATGAGAAAAT
* *
798404 ATATATAAATATATATGCGAAAAT
1 ATATATAAATAAATATGAGAAAAT
798428 CTGTATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (24 bp):
ATATATAAATAAATATGAGAAAAT
Found at i:798490 original size:27 final size:25
Alignment explanation
Indices: 798429--798495 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
798419 TGCGAAAATC
* *
798429 TGTATGTA-TATAATATAAAGAAAA
1 TGTATGTATTATAAAATAAAAAAAA
*
798453 TGTATGAATTATAAAATAAAAAAAA
1 TGTATGTATTATAAAATAAAAAAAA
798478 TGTATATGTATTATAAAA
1 TG--TATGTATTATAAAA
798496 CGTATGTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 7 0.19
25 16 0.44
27 13 0.36
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (25 bp):
TGTATGTATTATAAAATAAAAAAAA
Found at i:800301 original size:401 final size:401
Alignment explanation
Indices: 799558--800359 Score: 1595
Period size: 401 Copynumber: 2.0 Consensus size: 401
799548 GGGCCTGAGT
799558 GTTATAATGTAAAGTGGGTGTTGGATTGGGCCTGGGCACATTTGGGTTTATACAGTATATAATCC
1 GTTATAATGTAAAGTGGGTGTTGGATTGGGCCTGGGCACATTTGGGTTTATACAGTATATAATCC
799623 TCAGACTTGAGATCATCATAATCCCAACATCTTGAGTTGTATATTTTGATACAGTCAAACGTACA
66 TCAGACTTGAGATCATCATAATCCCAACATCTTGAGTTGTATATTTTGATACAGTCAAACGTACA
799688 CCGTAACTGGTTGTTCTATAAAGGCTGATGTTGGATATACCACAATCTATGTAGAGGGATATGGT
131 CCGTAACTGGTTGTTCTATAAAGGCTGATGTTGGATATACCACAATCTATGTAGAGGGATATGGT
799753 TGATCGATATAGGATAAGTCCCTCCTACATAATGGGAGTAATATCTTAGGCCACTTGATTGAGTG
196 TGATCGATATAGGATAAGTCCCTCCTACATAATGGGAGTAATATCTTAGGCCACTTGATTGAGTG
*
799818 AGACTAGAAATGCATGGCTATGCTCAAATAAGCTGATATGAGATGTCATACTTATTTGTATATCA
261 AGACTAGAAATGCATGGCCATGCTCAAATAAGCTGATATGAGATGTCATACTTATTTGTATATCA
799883 TAGTCTACTTAAGATATCAAGGAACATGGAATGAACTATACAAGTGTGACTATTCCATGATTTGT
326 TAGTCTACTTAAGATATCAAGGAACATGGAATGAACTATACAAGTGTGACTATTCCATGATTTGT
799948 GTTCAATCCAA
391 GTTCAATCCAA
799959 GTTATAATGTAAAGTGGGTGTTGGATTGGGCCTGGGCACATTTGGGTTTATACAGTATATAATCC
1 GTTATAATGTAAAGTGGGTGTTGGATTGGGCCTGGGCACATTTGGGTTTATACAGTATATAATCC
800024 TCAGACTTGAGATCATCATAATCCCAACATCTTGAGTTGTATATTTTGATACAGTCAAACGTACA
66 TCAGACTTGAGATCATCATAATCCCAACATCTTGAGTTGTATATTTTGATACAGTCAAACGTACA
800089 CCGTAACTGGTTGTTCTATAAAGGCTGATGTTGGATATACCACAATCTATGTAGAGGGATATGGT
131 CCGTAACTGGTTGTTCTATAAAGGCTGATGTTGGATATACCACAATCTATGTAGAGGGATATGGT
800154 TGATCGATATAGGATAAGTCCCTCCTACATAATGGGAGTAATATCTTAGGCCACTTGATTGAGTG
196 TGATCGATATAGGATAAGTCCCTCCTACATAATGGGAGTAATATCTTAGGCCACTTGATTGAGTG
800219 AGACTAGAAATGCATGGCCATGCTCAAATAAGCTGATATGAGATGTCATACTTATTTGTATATCA
261 AGACTAGAAATGCATGGCCATGCTCAAATAAGCTGATATGAGATGTCATACTTATTTGTATATCA
800284 TAGTCTACTTAAGATATCAAGGAACATGGAATGAACTATACAAGTGTGACTATTCCATGATTTGT
326 TAGTCTACTTAAGATATCAAGGAACATGGAATGAACTATACAAGTGTGACTATTCCATGATTTGT
800349 GTTCAATCCAA
391 GTTCAATCCAA
800360 AGATAAAGGA
Statistics
Matches: 400, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
401 400 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (401 bp):
GTTATAATGTAAAGTGGGTGTTGGATTGGGCCTGGGCACATTTGGGTTTATACAGTATATAATCC
TCAGACTTGAGATCATCATAATCCCAACATCTTGAGTTGTATATTTTGATACAGTCAAACGTACA
CCGTAACTGGTTGTTCTATAAAGGCTGATGTTGGATATACCACAATCTATGTAGAGGGATATGGT
TGATCGATATAGGATAAGTCCCTCCTACATAATGGGAGTAATATCTTAGGCCACTTGATTGAGTG
AGACTAGAAATGCATGGCCATGCTCAAATAAGCTGATATGAGATGTCATACTTATTTGTATATCA
TAGTCTACTTAAGATATCAAGGAACATGGAATGAACTATACAAGTGTGACTATTCCATGATTTGT
GTTCAATCCAA
Found at i:802924 original size:39 final size:39
Alignment explanation
Indices: 802813--802926 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
802803 TTTTGGACAA
* *
802813 AAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTACGT
1 AAAATGCCACTAAAAATCGAGCATTAGCGGCG-TTTACGG
* * *
802853 AAAATGCCGCTAAAGATCGAGCATTAGCGGCGTTTCCAGG
1 AAAATGCCACTAAAAATCGAGCATTAGCGGCGTTTAC-GG
*
802893 AAAGA-GCCACTAAAAAT-TAGCATTAGCGGCGTTT
1 AAA-ATGCCACTAAAAATCGAGCATTAGCGGCGTTT
802927 TTTGGAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
39 20 0.31
40 43 0.67
41 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (39 bp):
AAAATGCCACTAAAAATCGAGCATTAGCGGCGTTTACGG
Found at i:803028 original size:41 final size:41
Alignment explanation
Indices: 802971--803210 Score: 365
Period size: 41 Copynumber: 5.9 Consensus size: 41
802961 AAAGTACCTT
*
802971 TCAGATCTTTAGCGGCGTTTTT-AAAAAGGCGCTGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAA-GCGCCGCTAATGC
* *
803012 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
803053 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
803094 TCAGATCTTTAGCGGCATTTTTGAGAAAGCGCTGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
803135 TCAGATCTTTAGTGGTGTTTTTAAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
803176 TCAGATATTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
803211 ATAAACATTT
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 178 0.98
42 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (41 bp):
TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:803589 original size:14 final size:15
Alignment explanation
Indices: 803561--803593 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
803551 AAGGTTTATA
803561 GATTATGGAATTAGG
1 GATTATGGAATTAGG
803576 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
803590 GATT
1 GATT
803594 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:803695 original size:34 final size:34
Alignment explanation
Indices: 803632--803697 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
803622 AGGAGTTAAG
803632 GGTTAGAGATTTAGGGTTTATTAATTTAGTGTTA
1 GGTTAGAGATTTAGGGTTTATTAATTTAGTGTTA
*
803666 GGTTAG-GGTTTAGGGTTTAGATTAA-TTAGTGT
1 GGTTAGAGATTTAGGGTTT--ATTAATTTAGTGT
803698 ATTTTAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 11 0.38
34 13 0.45
35 5 0.17
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.45
Consensus pattern (34 bp):
GGTTAGAGATTTAGGGTTTATTAATTTAGTGTTA
Found at i:803756 original size:82 final size:82
Alignment explanation
Indices: 803666--803827 Score: 254
Period size: 82 Copynumber: 2.0 Consensus size: 82
803656 TTTAGTGTTA
* * *
803666 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTATATATTAAATAATGTTTAGGGG
1 GGTTAGGGTTTAGGATTTAGATTAATTAGTGTATTTTAATTTATATATTAAATAAGGTTTAGAGG
803731 TTAG-GGATTTGGGGTCG
66 TTAGTGG-TTTGGGGTCG
* * *
803748 GGTTAGGGTTTATGATTTAGATTAATTAGTGTTTTTTAATTTCTATATTAAATAAGGTTTAGAGG
1 GGTTAGGGTTTAGGATTTAGATTAATTAGTGTATTTTAATTTATATATTAAATAAGGTTTAGAGG
803813 TTAGTGGTTTGGGGT
66 TTAGTGGTTTGGGGT
803828 TTGGGGTTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
82 71 0.97
83 2 0.03
ACGTcount: A:0.25, C:0.01, G:0.28, T:0.46
Consensus pattern (82 bp):
GGTTAGGGTTTAGGATTTAGATTAATTAGTGTATTTTAATTTATATATTAAATAAGGTTTAGAGG
TTAGTGGTTTGGGGTCG
Found at i:803855 original size:28 final size:29
Alignment explanation
Indices: 803803--803857 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
803793 TATTAAATAA
* * *
803803 GGTTTAGAGGTTAGTGGTTTGGGGTTTGG
1 GGTTAAGAGGTTAGTGATTTAGGGTTTGG
803832 GGTTAAGA-GTTAGTGATTTAGGGTTT
1 GGTTAAGAGGTTAGTGATTTAGGGTTT
803858 AGAGATTCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (29 bp):
GGTTAAGAGGTTAGTGATTTAGGGTTTGG
Found at i:804451 original size:14 final size:14
Alignment explanation
Indices: 804421--804473 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
804411 GGGTTGTGAT
* *
804421 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
*
804435 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
804449 TTAAGGGTTAGAGA
1 TTAAGGGTTAGGGG
*
804463 TTAAGAGTTAG
1 TTAAGGGTTAG
804474 AGATTTAAGG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.40, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:804474 original size:14 final size:14
Alignment explanation
Indices: 804449--804478 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
804439 GGGTTAGGGG
*
804449 TTAAGGGTTAGAGA
1 TTAAGAGTTAGAGA
804463 TTAAGAGTTAGAGA
1 TTAAGAGTTAGAGA
804477 TT
1 TT
804479 TAAGGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (14 bp):
TTAAGAGTTAGAGA
Found at i:804751 original size:7 final size:7
Alignment explanation
Indices: 804739--804774 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
804729 AAAGAGGGGC
804739 TAAGGGT
1 TAAGGGT
804746 TAAGGGT
1 TAAGGGT
804753 TAAGGGT
1 TAAGGGT
*
804760 TAGGGGT
1 TAAGGGT
*
804767 TTAGGGT
1 TAAGGGT
804774 T
1 T
804775 TATGTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (7 bp):
TAAGGGT
Found at i:804775 original size:7 final size:7
Alignment explanation
Indices: 804741--804849 Score: 51
Period size: 7 Copynumber: 15.4 Consensus size: 7
804731 AGAGGGGCTA
*
804741 AGGGTTA
1 AGGGTTT
*
804748 AGGGTTA
1 AGGGTTT
804755 AGGG-TT
1 AGGGTTT
804761 AGGGGTTT
1 A-GGGTTT
804769 AGGGTTT
1 AGGGTTT
* *
804776 ATGTTTT
1 AGGGTTT
* *
804783 ATGATTT
1 AGGGTTT
804790 AGGGTTTT
1 AGGG-TTT
** *
804798 AAAG-AT
1 AGGGTTT
804804 AGTGGTTT
1 AG-GGTTT
804812 AGGGTTT
1 AGGGTTT
804819 AGGGTTT
1 AGGGTTT
* *
804826 ATGTTTT
1 AGGGTTT
***
804833 ATAATTT
1 AGGGTTT
804840 AGGGTTT
1 AGGGTTT
804847 AGG
1 AGG
804850 AGATAGGGGT
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
6 4 0.05
7 63 0.81
8 11 0.14
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:804854 original size:50 final size:50
Alignment explanation
Indices: 804756--804870 Score: 160
Period size: 50 Copynumber: 2.3 Consensus size: 50
804746 TAAGGGTTAA
* *
804756 GGGTTAGGGGTTTAGGGTTTATGTTTTATGATTTAGGGTTTTAAAGATAG
1 GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTAAAGATAG
* * *
804806 TGGTTTAGGGTTTAGGGTTTATGTTTTATAATTTAGGG-TTTAGGAGATAG
1 GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTA-AAGATAG
*
804856 GGGTTAAAGGTTTAG
1 GGGTTAAGGGTTTAG
804871 ATTAATCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 4 0.07
50 52 0.93
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (50 bp):
GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTAAAGATAG
Found at i:805756 original size:23 final size:21
Alignment explanation
Indices: 805714--805757 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
805704 CCCTTCCCTC
*
805714 CAAAACCCAAATTCCTTCAAA
1 CAAAACCCAAACTCCTTCAAA
805735 CAAAACCCAAACCCTCCTTCAAA
1 CAAAACCCAAA--CTCCTTCAAA
805758 TTATGCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (21 bp):
CAAAACCCAAACTCCTTCAAA
Found at i:806684 original size:43 final size:43
Alignment explanation
Indices: 806631--806941 Score: 398
Period size: 43 Copynumber: 7.3 Consensus size: 43
806621 TATATGTTTT
* * * * *
806631 TAGCGACGTTTGTGGGAAAAGTGCCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * * * *
806674 TAGCGGCGTTTGTGGAAAAAACGCGGCTAAAAGTCATGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
806717 TAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAA-GTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCT-AAAGGTCATGATCTA
* * * *
806760 TAACGTCGTTTGTGGGATAAGCGCCGCTAAAGGTTC-TGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGATCTA
*
806803 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGTTC-TGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGATCTA
*
806845 TAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCCA-GATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-CATGATCTA
*
806888 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
806931 TAGCGGCGTTT
1 TAGCGGCGTTT
806942 ATTTCTAAAA
Statistics
Matches: 235, Mismatches: 26, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
42 45 0.19
43 185 0.79
44 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
Found at i:806886 original size:128 final size:129
Alignment explanation
Indices: 806637--806941 Score: 404
Period size: 128 Copynumber: 2.4 Consensus size: 129
806627 TTTTTAGCGA
* * * * *
806637 CGTTTGTGGGAAAAGTGCCGCTAAAGATCTTGAGCTATAGCGGCGTTTGTGGAAAAAACGCGGCT
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGCT
*
806702 AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGT
66 AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGG
* * *
806766 CGTTTGTGGGATAAGCGCCGCTAAAGGTTC-TGACCTATAGCGGCGTTTGT-GTAAAAGCGCCGC
1 CGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGC
* * * *
806829 TAAAGGTTC-TGATCTATAGCGGCGTTTGTGGGAGAAGCGCCGCT-AAAGGTCCA-GATCTATAG
65 TAAAAG-TCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAA-GT-CATGATCTATAA
806891 CGG
127 CGG
* *
806894 CGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTATAGCGGCGTTT
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTT
806942 ATTTCTAAAA
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
127 5 0.03
128 102 0.65
129 47 0.30
130 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (129 bp):
CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGCT
AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGG
Found at i:807224 original size:19 final size:19
Alignment explanation
Indices: 807202--807241 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
807192 TTGAATTGTC
*
807202 AAAA-TACATTTGAATAACA
1 AAAACTACATTT-AAGAACA
807221 AAAACTACATTTAAGAACA
1 AAAACTACATTTAAGAACA
807240 AA
1 AA
807242 GTTAGACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAACTACATTTAAGAACA
Found at i:821973 original size:17 final size:17
Alignment explanation
Indices: 821951--821987 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
821941 ATTCATAAAG
821951 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
821968 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
821985 TAT
1 TAT
821988 TGATAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
TATGTAAAATTGAATGA
Found at i:823481 original size:88 final size:88
Alignment explanation
Indices: 823356--823553 Score: 238
Period size: 88 Copynumber: 2.2 Consensus size: 88
823346 GACCCAGAGT
* *
823356 GAAACATGTGTCAAATGGGCCTAAAACCCGCTTAGAATGTCAGTCCCAAGTATAGAGAGGACCAC
1 GAAACATGTGTCAAGTGGGCCTAAAACCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
*
823421 GTACACTACAGGCGACCCAAGG-C
66 GTACACTACAGGCAACCC-AGGAC
* * * * *
823444 GAAACATGTGTCCAGTGGGCCTAAAGCCCG-TTCAGAATGTCAGCCCCAGGTGTAGAGAGGACTA
1 GAAACATGTGTCAAGTGGGCCTAAAACCCGCTT-AGAATGTCAGCCCCAAGTATAGAGAGGACCA
* *
823508 TGTACACTATAGGCAACCCAGGAC
65 CGTACACTACAGGCAACCCAGGAC
* * * *
823532 AAAACACGTGTCTAGTAGGCCT
1 GAAACATGTGTCAAGTGGGCCT
823554 GGAGCCTACG
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 5 0.05
88 89 0.95
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (88 bp):
GAAACATGTGTCAAGTGGGCCTAAAACCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
GTACACTACAGGCAACCCAGGAC
Found at i:826019 original size:21 final size:21
Alignment explanation
Indices: 825993--826044 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
825983 TTATTATTAA
825993 GTCTCGAGACAACATGAACAT
1 GTCTCGAGACAACATGAACAT
826014 GTCTCGAGACAACATGAACAT
1 GTCTCGAGACAACATGAACAT
*
826035 GTCTCAAGAC
1 GTCTCGAGAC
826045 CATAAGAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (21 bp):
GTCTCGAGACAACATGAACAT
Found at i:827028 original size:26 final size:26
Alignment explanation
Indices: 826974--827028 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
826964 GAGGATTTAG
*
826974 TTATTATTATTTGATATTAGATAGTT
1 TTATTATTATTTGATATTAGATAATT
*
827000 TTATTATTATTTGATTTTAG-TAATAT
1 TTATTATTATTTGATATTAGATAAT-T
827026 TTA
1 TTA
827029 CACAATTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (26 bp):
TTATTATTATTTGATATTAGATAATT
Found at i:828790 original size:26 final size:27
Alignment explanation
Indices: 828754--828820 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 27
828744 AAAAATAACT
828754 AAAATATTATAAATTTT-TTATTTACC
1 AAAATATTATAAATTTTATTATTTACC
*
828780 AAAATATTATAATTATTTTATTATTTATC
1 AAAATATTATAA--ATTTTATTATTTACC
828809 AAAATA-TATAAA
1 AAAATATTATAAA
828821 AAAATAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 13 0.35
28 10 0.27
29 14 0.38
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
AAAATATTATAAATTTTATTATTTACC
Found at i:829002 original size:22 final size:22
Alignment explanation
Indices: 828977--829041 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
828967 TGGGGGGGAG
**
828977 AAGGAGAGGGAAGAAAGAAAGA
1 AAGGAGAGCAAAGAAAGAAAGA
*
828999 AAGGAGAGCAAAGAAAGAAAAA
1 AAGGAGAGCAAAGAAAGAAAGA
* *
829021 GAAGGAAAGAAAAGGAAAGAA
1 -AAGGAGAGCAAA-GAAAGAA
829042 GAAGAAGAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
22 19 0.53
23 10 0.28
24 7 0.19
ACGTcount: A:0.65, C:0.02, G:0.34, T:0.00
Consensus pattern (22 bp):
AAGGAGAGCAAAGAAAGAAAGA
Found at i:829021 original size:10 final size:10
Alignment explanation
Indices: 829012--829194 Score: 68
Period size: 10 Copynumber: 17.6 Consensus size: 10
829002 GAGAGCAAAG
829012 AAAGAAA-AA
1 AAAGAAAGAA
*
829021 GAAGGAAAGAA
1 -AAAGAAAGAA
*
829032 AAGGAAAGAA
1 AAAGAAAGAA
* *
829042 GAAGAAGAGGA
1 AAAGAA-AGAA
*
829053 AATGAGAAGAAA
1 AAAGA-AAG-AA
829065 AAAGAAAGAA
1 AAAGAAAGAA
*
829075 AAAGAAGGAA
1 AAAGAAAGAA
*
829085 AGAA-AAGGAA
1 A-AAGAAAGAA
*
829095 AGGAGAAGAGAA
1 A-AAGAA-AGAA
*
829107 AAAAAAAGAA
1 AAAGAAAGAA
*
829117 GAAG-AAGAA
1 AAAGAAAGAA
* * *
829126 GAGGAAAGGA
1 AAAGAAAGAA
* *
829136 GAAGAAAAAA
1 AAAGAAAGAA
829146 GAAAGAAA-AA
1 -AAAGAAAGAA
*
829156 GAAGGAAAGAA
1 -AAAGAAAGAA
*
829167 AAGGAAAGGAGA
1 AAAGAAA-GA-A
* *
829179 AGAGAAAAAA
1 AAAGAAAGAA
829189 AAAGAA
1 AAAGAA
829195 GAAGAGGGAA
Statistics
Matches: 135, Mismatches: 26, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
9 8 0.06
10 80 0.59
11 31 0.23
12 16 0.12
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:829107 original size:36 final size:36
Alignment explanation
Indices: 829067--829195 Score: 168
Period size: 36 Copynumber: 3.4 Consensus size: 36
829057 AGAAGAAAAA
*
829067 AGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 AGAAAAAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
* *
829103 AGAAAAAAAAAGAAGAAGAAGAAGAGGAAAGGAGAAG
1 AGAAAAAAAAAGAAGGA-AAGAAAAGGAAAGGAGAAG
*
829140 AAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 -----AGAAAAAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
829181 AGAAAAAAAAAGAAG
1 AGAAAAAAAAAGAAG
829196 AAGAGGGAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
36 29 0.36
37 18 0.22
41 18 0.22
42 15 0.19
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (36 bp):
AGAAAAAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG
Found at i:829181 original size:24 final size:24
Alignment explanation
Indices: 829011--829199 Score: 95
Period size: 24 Copynumber: 7.7 Consensus size: 24
829001 GGAGAGCAAA
* *
829011 GAAAGAAAAAGAAGGA-AAGAAAAG
1 GAAAG-AAAAGAAGAAGAAGAAGAG
* *
829035 GAAAG--AAGAAGAAGAGGAA-AT
1 GAAAGAAAAGAAGAAGAAGAAGAG
*
829056 GAGAAGAAAA-AAGAAAGAAAAAGAAG
1 GA-AAGAAAAGAAG-AAGAAGAAG-AG
* *
829082 GAAAGAAAAGGA-AAGGAGAAGAG
1 GAAAGAAAAGAAGAAGAAGAAGAG
* *
829105 AAAAAAAAAGAAGAAGAAGAAGAG
1 GAAAGAAAAGAAGAAGAAGAAGAG
* *
829129 GAAAGGAGAAGAAAAAAGAAAGAAAAAGAAG
1 G-AA--AG-A-AAAGAAG-AAGAAGAAG-AG
* *
829160 GAAAGAAAAGGA-AAGGAGAAGAG
1 GAAAGAAAAGAAGAAGAAGAAGAG
* *
829183 AAAAAAAAAGAAGAAGA
1 GAAAGAAAAGAAGAAGA
829200 GGGAAGGAAG
Statistics
Matches: 123, Mismatches: 25, Indels: 34
0.68 0.14 0.19
Matches are distributed among these distances:
21 10 0.08
22 7 0.06
23 25 0.20
24 40 0.33
25 9 0.07
26 8 0.07
27 2 0.02
28 3 0.02
29 6 0.05
30 10 0.08
31 3 0.02
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (24 bp):
GAAAGAAAAGAAGAAGAAGAAGAG
Found at i:829207 original size:31 final size:30
Alignment explanation
Indices: 829145--829227 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 30
829135 AGAAGAAAAA
* *
829145 AGAA-AGAAAAAGAAGGAAAGAAAAGGAAAGG
1 AGAAGAGAAAAAAAAAG-AAGAAAAGGAAA-G
* *
829176 AGAAGAGAAAAAAAAAGAAGAAGAGGGAAG
1 AGAAGAGAAAAAAAAAGAAGAAAAGGAAAG
*
829206 -GAAG-GAAAAAAAAAGAAAAAAA
1 AGAAGAGAAAAAAAAAGAAGAAAA
829228 AGGTAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
28 16 0.36
29 4 0.09
30 1 0.02
31 14 0.31
32 10 0.22
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (30 bp):
AGAAGAGAAAAAAAAAGAAGAAAAGGAAAG
Found at i:829207 original size:36 final size:36
Alignment explanation
Indices: 829040--829208 Score: 162
Period size: 36 Copynumber: 4.5 Consensus size: 36
829030 AAAAGGAAAG
* * * *
829040 AAGAAGAAGAGGAAATGAGAA-GAAAAAAGAAAGAAA
1 AAGAAGAAGAGGAAAGGA-AAGGAGAAGAGAAAAAAA
*
829076 AAGAAGGAA-AGAAAAGGAAAGGAGAAGAGAAAAAAA
1 AAGAA-GAAGAGGAAAGGAAAGGAGAAGAGAAAAAAA
* *
829112 AAGAAGAAGAAGAAGAGGAAAGGAGAAGAAAAAAGAAA
1 AAGAAGAAGAGGAA-AGGAAAGGAGAAGAGAAAA-AAA
* *
829150 GAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAA
1 -AAGAAGAA-G--AGGAAAGGAAAGGAGAAGAGAAAAAAA
*
829190 AAGAAGAAGAGGGAAGGAA
1 AAGAAGAAGAGGAAAGGAA
829209 GGAAAAAAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 18
0.77 0.11 0.13
Matches are distributed among these distances:
35 5 0.05
36 40 0.37
37 21 0.19
38 4 0.04
39 14 0.13
40 4 0.04
41 18 0.17
42 3 0.03
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (36 bp):
AAGAAGAAGAGGAAAGGAAAGGAGAAGAGAAAAAAA
Found at i:829225 original size:36 final size:36
Alignment explanation
Indices: 829021--829227 Score: 142
Period size: 36 Copynumber: 5.6 Consensus size: 36
829011 GAAAGAAAAA
* * *
829021 GAAGG-AAAGAAAAGGAAAGAAGAAGAAGAGGAAATG
1 GAAGGAAAAAAAAAGAAAAAAAGAAGAAGAGGAAA-G
*
829057 AGAA-GAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGG
1 -GAAGGAAAAAA-AAAGAAAAA-AA-G-AAGAAGAGGAAA-G
*
829098 AGAAGAGAAAAAAAAAG--AAGAAGAAGAAGAGGAAAG
1 -GAAG-GAAAAAAAAAGAAAAAAAGAAGAAGAGGAAAG
* *
829134 G-A-GAAGAAAAAAGAAAGAAAAAGAAGGAA-AGAAAAG
1 GAAGGAAAAAAAAAG-AA-AAAAAGAA-GAAGAGGAAAG
* * * *
829170 GAAAGGAGAAGAGAA-AAAAAAAGAAGAAGAGGGAAG
1 G-AAGGAAAAAAAAAGAAAAAAAGAAGAAGAGGAAAG
829206 GAAGGAAAAAAAAAGAAAAAAA
1 GAAGGAAAAAAAAAGAAAAAAA
829228 AGGTAATTTT
Statistics
Matches: 134, Mismatches: 19, Indels: 35
0.71 0.10 0.19
Matches are distributed among these distances:
32 10 0.07
34 1 0.01
35 14 0.10
36 37 0.28
37 23 0.17
38 9 0.07
39 10 0.07
40 3 0.02
41 16 0.12
42 4 0.03
43 7 0.05
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.00
Consensus pattern (36 bp):
GAAGGAAAAAAAAAGAAAAAAAGAAGAAGAGGAAAG
Found at i:829991 original size:27 final size:27
Alignment explanation
Indices: 829961--830016 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
829951 AAAGAGGGTG
*
829961 ATGGAGGGGAATAAAAAAGCGGCACCA
1 ATGGAGAGGAATAAAAAAGCGGCACCA
*
829988 ATGGAGAGGAATAAAAAGGCGGCACCA
1 ATGGAGAGGAATAAAAAAGCGGCACCA
830015 AT
1 AT
830017 ATTGGCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.32, T:0.09
Consensus pattern (27 bp):
ATGGAGAGGAATAAAAAAGCGGCACCA
Found at i:835038 original size:18 final size:18
Alignment explanation
Indices: 835015--835049 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
835005 CCCAATGATC
*
835015 GCCACCACCTTCTTCTTT
1 GCCACCACATTCTTCTTT
835033 GCCACCACATTCTTCTT
1 GCCACCACATTCTTCTT
835050 CACCCCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.43, G:0.06, T:0.37
Consensus pattern (18 bp):
GCCACCACATTCTTCTTT
Found at i:835845 original size:3 final size:3
Alignment explanation
Indices: 835837--835865 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
835827 ATCTTAAACT
835837 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
835866 TAATACTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:835963 original size:22 final size:23
Alignment explanation
Indices: 835918--835966 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
835908 ATAACTAACC
835918 TAAAACAAAAAATATTACAAAATA
1 TAAAACAAAAAATA-TACAAAATA
835942 TAAAA-AAAAAATA-ACAACAATA
1 TAAAACAAAAAATATACAA-AATA
835964 TAA
1 TAA
835967 TCAATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.17
22 7 0.29
23 8 0.33
24 5 0.21
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.18
Consensus pattern (23 bp):
TAAAACAAAAAATATACAAAATA
Found at i:836009 original size:13 final size:13
Alignment explanation
Indices: 835991--836021 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
835981 AAAAATACCT
835991 TCTTTTTCTCTTC
1 TCTTTTTCTCTTC
836004 TCTTTTTCTCTTC
1 TCTTTTTCTCTTC
836017 T-TTTT
1 TCTTTT
836022 CGCAACACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TCTTTTTCTCTTC
Found at i:836246 original size:27 final size:29
Alignment explanation
Indices: 836213--836283 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 29
836203 TTTTGTTTTT
836213 TTATATATTTTGGTAAATAATAAAAA-TAA
1 TTATATATTTTGGTAAATAA-AAAAAGTAA
*
836242 TTATAATATTTTGGTAAATAAAAAAAGTTA
1 TTAT-ATATTTTGGTAAATAAAAAAAGTAA
836272 -TA-ATATTTTGGT
1 TTATATATTTTGGT
836284 TATTTTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 10 0.26
29 11 0.28
30 18 0.46
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (29 bp):
TTATATATTTTGGTAAATAAAAAAAGTAA
Found at i:836252 original size:30 final size:27
Alignment explanation
Indices: 836213--836283 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
836203 TTTTGTTTTT
836213 TTAT-ATATTTTGGTAAATAATAAAAATAA
1 TTATAATATTTTGGTAAAT-A-AAAAA-AA
*
836242 TTATAATATTTTGGTAAATAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAA
836269 TTATAATATTTTGGT
1 TTATAATATTTTGGT
836284 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 16 0.40
28 5 0.12
29 5 0.12
30 14 0.35
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (27 bp):
TTATAATATTTTGGTAAATAAAAAAAA
Found at i:840550 original size:9 final size:9
Alignment explanation
Indices: 840536--840561 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
840526 ATTAAAAAAA
840536 TCGAATAAT
1 TCGAATAAT
840545 TCGAATAAT
1 TCGAATAAT
840554 TCGAATAA
1 TCGAATAA
840562 CAAATTTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (9 bp):
TCGAATAAT
Found at i:840662 original size:19 final size:19
Alignment explanation
Indices: 840640--840711 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
840630 AAAAATACAA
*
840640 AAAAATTTAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
840659 AAAAAATTCAAAATACTTTT
1 -AAAAATTCAAAATAATTTT
*
840679 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
840698 ATAAATTCTAAAAT
1 AAAAATTC-AAAAT
840712 TTTATATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.07
19 19 0.43
20 22 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:840702 original size:20 final size:19
Alignment explanation
Indices: 840641--840717 Score: 79
Period size: 19 Copynumber: 4.1 Consensus size: 19
840631 AAAATACAAA
* *
840641 AAAATTTAAAATAATTTTAA
1 AAAATTCAAAAT-ATTTTAT
840661 AAAATTCAAAATACTTTT-T
1 AAAATTCAAAATA-TTTTAT
840680 AAAATTCAAAATA-TTTAT
1 AAAATTCAAAATATTTTAT
*
840698 ATAAATTCTAAA-ATTTTAT
1 A-AAATTCAAAATATTTTAT
840717 A
1 A
840718 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
17 3 0.06
18 3 0.06
19 29 0.58
20 15 0.30
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATATTTTAT
Found at i:845017 original size:24 final size:24
Alignment explanation
Indices: 844965--845123 Score: 103
Period size: 25 Copynumber: 6.4 Consensus size: 24
844955 GTACATGTAT
* * *
844965 GCTCATACGAGCTCTGAATCGGTAT
1 GCTCATACGAACTGT-AATCGGTAA
*
844990 GCTCTTACGAACTGTAATCGGTAA
1 GCTCATACGAACTGTAATCGGTAA
845014 GCTCATAC-AAGCTGAGTAAT-GGTAA
1 GCTCATACGAA-CT--GTAATCGGTAA
* *
845039 GCTCATGCGAGCTG-AATAACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
* *
845064 GCTCATACGAGCT-AAATGACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
* *
845089 GCTCATACGAGCT-AAATGACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
845114 GCTCATACGA
1 GCTCATACGA
845124 GGTGAAATTG
Statistics
Matches: 117, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
22 3 0.03
23 3 0.03
24 17 0.15
25 88 0.75
26 6 0.05
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (24 bp):
GCTCATACGAACTGTAATCGGTAA
Found at i:845018 original size:49 final size:49
Alignment explanation
Indices: 844965--845124 Score: 153
Period size: 50 Copynumber: 3.2 Consensus size: 49
844955 GTACATGTAT
* * *
844965 GCTCATACGAGCTCTG-AATCGGTATGCTCTTACGAACTGTAAT-CGGTAA
1 GCTCATACGAGCTCAGTAAT-GGTAAGCTCATACGAACTG-AATACGGTAA
* * * *
845014 GCTCATACAAGCTGAGTAATGGTAAGCTCATGCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAAT-ACGGTAA
* * * * * *
845064 GCTCATACGAGCTAAATGACGGTAAGCTCATACGAGCTAAATGACGGTAA
1 GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAAT-ACGGTAA
845114 GCTCATACGAG
1 GCTCATACGAG
845125 GTGAAATTGG
Statistics
Matches: 93, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
48 3 0.03
49 28 0.30
50 62 0.67
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (49 bp):
GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAATACGGTAA
Found at i:845122 original size:50 final size:50
Alignment explanation
Indices: 845008--845124 Score: 162
Period size: 50 Copynumber: 2.3 Consensus size: 50
844998 GAACTGTAAT
* * * * * *
845008 CGGTAAGCTCATACAAGCTGAGTAATGGTAAGCTCATGCGAGCTGAATAA
1 CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
* *
845058 CGGTAAGCTCATACGAGCTAAATGACGGTAAGCTCATACGAGCTAAATGA
1 CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
845108 CGGTAAGCTCATACGAG
1 CGGTAAGCTCATACGAG
845125 GTGAAATTGG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (50 bp):
CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
Found at i:854765 original size:12 final size:13
Alignment explanation
Indices: 854739--854763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
854729 GAATTAGACT
854739 TAAAATTTTTAAA
1 TAAAATTTTTAAA
854752 TAAAATTTTTAA
1 TAAAATTTTTAA
854764 TAGGTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:860392 original size:28 final size:28
Alignment explanation
Indices: 860355--860430 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
860345 TGGTTATACA
*
860355 TATATTATATATATGAATGGCTTTATTT
1 TATATAATATATATGAATGGCTTTATTT
* *
860383 TATATAATATATATGCATGACTTTATTT
1 TATATAATATATATGAATGGCTTTATTT
* *
860411 CATATAATATATATTAATGG
1 TATATAATATATATGAATGG
860431 ATTTTGGTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (28 bp):
TATATAATATATATGAATGGCTTTATTT
Found at i:865565 original size:14 final size:15
Alignment explanation
Indices: 865548--865578 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
865538 TTGGAAACAC
865548 TTTT-AGAAATACTT
1 TTTTCAGAAATACTT
865562 TTTTCAGAAATACTT
1 TTTTCAGAAATACTT
865577 TT
1 TT
865579 GTCGATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTTCAGAAATACTT
Found at i:868813 original size:27 final size:27
Alignment explanation
Indices: 868772--869120 Score: 466
Period size: 27 Copynumber: 12.9 Consensus size: 27
868762 TTAACTTTAT
*
868772 CGAAATACCCTCGATGGATAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
868799 CGAAACACTCC-CGATGGGTAAAATTAC
1 CGAAATAC-CCTCGATGGGTAAAATTAC
868826 CGAAATACCCTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
868853 TGAAATACCCTTGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
** *
868880 TAAAATACCCTTGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
** *
868907 TAAAATACCCTCGATAGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * * *
868934 CAAAACAGCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
868961 CGAAATACCCTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
868988 CGAAATACCTTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * *
869015 TGAAATACCCTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
869042 CGAAATACCTTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
869069 TGAAATACCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
869096 CGAAATACCTTCGATGGGTAAAATT
1 CGAAATACCCTCGATGGGTAAAATT
869121 GACTGTTATG
Statistics
Matches: 287, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 283 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTCGATGGGTAAAATTAC
Found at i:883866 original size:39 final size:39
Alignment explanation
Indices: 883812--883888 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
883802 TTATTCTAAT
883812 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
1 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
883851 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGT
1 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGT
883889 TAAGAAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (39 bp):
GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
Found at i:885339 original size:50 final size:50
Alignment explanation
Indices: 885264--885443 Score: 186
Period size: 50 Copynumber: 3.6 Consensus size: 50
885254 AAGATCCCAT
** **
885264 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCAAC
* * *
885314 GTAAGACCATGTCTGGGACATGGCATAGGCACCGATATGAGAACTCCAAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCAAC
* * * * * * *
885364 GTAAGACCATATCTGGGATATGGCATTGGTA--GTACAGGA-AACATCCTAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAAC-TCCAAC
*
885413 GTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
885444 TGTTATTATC
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 36 0.33
50 70 0.64
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCAAC
Found at i:885670 original size:20 final size:20
Alignment explanation
Indices: 885645--885693 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
885635 TGAGTTATTT
885645 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
885665 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
885685 AAG-AAGCAA
1 AAGTAAGCAA
885694 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:890375 original size:10 final size:10
Alignment explanation
Indices: 890345--890378 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
890335 ATTCAGCATA
890345 AAATTGAAAAT
1 AAATT-AAAAT
890356 AAACTTAAAAT
1 AAA-TTAAAAT
890367 AAATTAAAAT
1 AAATTAAAAT
890377 AA
1 AA
890379 GAGTTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 11 0.50
12 2 0.09
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:894583 original size:24 final size:24
Alignment explanation
Indices: 894551--894597 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
894541 TTGGACTAGC
894551 ATGTAGATACTTCATTCTACTTGT
1 ATGTAGATACTTCATTCTACTTGT
894575 ATGTAGATACTTCATTCTACTTG
1 ATGTAGATACTTCATTCTACTTG
894598 ATGAGTGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (24 bp):
ATGTAGATACTTCATTCTACTTGT
Found at i:900987 original size:6 final size:6
Alignment explanation
Indices: 900973--901012 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
900963 AAACATAAAC
*
900973 AAATT- AAATTA AAATTA AAATTA AAA-TC AAATTA AAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
901013 TAAACAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:900989 original size:11 final size:11
Alignment explanation
Indices: 900973--901012 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
900963 AAACATAAAC
900973 AAATTAAATTA
1 AAATTAAATTA
900984 AAATTAAAATTA
1 AAATT-AAATTA
*
900996 AAATCAAATTA
1 AAATTAAATTA
901007 AAATTA
1 AAATTA
901013 TAAACAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATTAAATTA
Found at i:900995 original size:17 final size:17
Alignment explanation
Indices: 900973--901058 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
900963 AAACATAAAC
*
900973 AAATTAAATTAAAATTA
1 AAATTAAAATAAAATTA
*
900990 AAATTAAAATCAAATTA
1 AAATTAAAATAAAATTA
* *
901007 AAATTATAAACAAAGATAA
1 AAATTA-AAATAAA-ATTA
*
901026 AAATGAAAAATAGAAA-TA
1 AAAT-TAAAATA-AAATTA
*
901044 AAACTAAAACTAAAA
1 AAATTAAAA-TAAAA
901059 CTAGAAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
17 28 0.52
18 11 0.20
19 12 0.22
20 3 0.06
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
AAATTAAAATAAAATTA
Found at i:907715 original size:36 final size:36
Alignment explanation
Indices: 907663--907767 Score: 140
Period size: 36 Copynumber: 2.9 Consensus size: 36
907653 AGTAAACTCT
* *
907663 ATTCAGTTCAGTAGCCTTCCAGATCTATTCTGACTA
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
* * * * *
907699 ATTCAGTCCAGCAGCCTTTCAGATCTATTTTAATTG
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
907735 ATTCAGTTCAGCAGCCTTTC-GATCTATTCTGAC
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGAC
907768 CGATGCACTC
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 10 0.17
36 48 0.83
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (36 bp):
ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
Found at i:909178 original size:16 final size:16
Alignment explanation
Indices: 909157--909187 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
909147 TTCGAAAAAG
909157 AATTTATACCTCCATC
1 AATTTATACCTCCATC
909173 AATTTATACCTCCAT
1 AATTTATACCTCCAT
909188 TCTCAGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTTATACCTCCATC
Found at i:913937 original size:14 final size:14
Alignment explanation
Indices: 913918--913948 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
913908 AATTACATTT
913918 CATATAAACTTCCA
1 CATATAAACTTCCA
913932 CATATAAACTTCCA
1 CATATAAACTTCCA
913946 CAT
1 CAT
913949 CATCCTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CATATAAACTTCCA
Found at i:915759 original size:80 final size:80
Alignment explanation
Indices: 915626--915944 Score: 620
Period size: 80 Copynumber: 4.0 Consensus size: 80
915616 CAAGAAGAAT
* *
915626 TAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
1 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
915691 TCTGAGCAAACCCTC
66 TCTGAGCAAACCCTC
915706 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
1 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
915771 TCTGAGCAAACCCTC
66 TCTGAGCAAACCCTC
915786 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
1 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
915851 TCTGAGCAAACCCTC
66 TCTGAGCAAACCCTC
915866 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
1 TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
915931 TCTGAGCAAACCCT
66 TCTGAGCAAACCCT
915945 TTAATGGATA
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 237 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.42
Consensus pattern (80 bp):
TAGGTGGTCTAATGACTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATTT
TCTGAGCAAACCCTC
Found at i:919325 original size:63 final size:63
Alignment explanation
Indices: 919248--919376 Score: 179
Period size: 63 Copynumber: 2.0 Consensus size: 63
919238 AATATCTCTC
* * * * *
919248 ACACGGCTTGGACACATGCTCGTGTCTCTAGCCCATGTGACC-CTATTTCCAAAACAATGAGTT
1 ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTG-CCTCTAATTCCAAAACAATGAGTT
* *
919311 ACACGACTTGGACACACGCCCTTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAGTGAGTT
1 ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAATGAGTT
919374 ACA
1 ACA
919377 AGGCCTAACA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 2 0.03
63 56 0.97
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (63 bp):
ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAATGAGTT
Found at i:920613 original size:16 final size:17
Alignment explanation
Indices: 920592--920627 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
920582 AGAGTGGAAA
*
920592 AAAATTGGAAGGGT-GG
1 AAAATTGAAAGGGTAGG
920608 AAAATTGAAAGGGTAGG
1 AAAATTGAAAGGGTAGG
920625 AAA
1 AAA
920628 CTAGAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.17
Consensus pattern (17 bp):
AAAATTGAAAGGGTAGG
Found at i:920821 original size:22 final size:22
Alignment explanation
Indices: 920796--920838 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
920786 CATATACCTC
920796 TCTCTCATT-TTTTCTCTTCTCA
1 TCTCTC-TTATTTTCTCTTCTCA
*
920818 TCTCTCTTATTTTCTTTTCTC
1 TCTCTCTTATTTTCTCTTCTC
920839 TCACTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (22 bp):
TCTCTCTTATTTTCTCTTCTCA
Found at i:923192 original size:24 final size:24
Alignment explanation
Indices: 923153--923201 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
923143 CTAGCATGAC
* *
923153 ATTTTTTATTTCATCTTTTATTTT
1 ATTTTTTATTTCATCTATCATTTT
923177 ATTTATTTATTT-ATCTATCATTTT
1 ATTT-TTTATTTCATCTATCATTTT
923201 A
1 A
923202 ATATTATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (24 bp):
ATTTTTTATTTCATCTATCATTTT
Found at i:924488 original size:31 final size:32
Alignment explanation
Indices: 924428--924488 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
924418 TTGGTGCAAT
* *
924428 TATACATACGAAACTTTGATTGTGGTTCAAATG
1 TATACATA-GAAACTTTAATTGTGATTCAAATG
*
924461 TATACAT-GAAACTTTAATTTTGATTCAA
1 TATACATAGAAACTTTAATTGTGATTCAA
924489 TCATACACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 18 0.72
33 7 0.28
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (32 bp):
TATACATAGAAACTTTAATTGTGATTCAAATG
Found at i:924914 original size:18 final size:18
Alignment explanation
Indices: 924891--924928 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
924881 AAAAATTTTT
*
924891 TTATAAAGGTTATATATA
1 TTATAAAAGTTATATATA
*
924909 TTATAAAATTTATATATA
1 TTATAAAAGTTATATATA
924927 TT
1 TT
924929 GACTTCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATAAAAGTTATATATA
Found at i:930365 original size:40 final size:40
Alignment explanation
Indices: 930321--930718 Score: 296
Period size: 40 Copynumber: 9.9 Consensus size: 40
930311 AGATGCATAA
* *
930321 CAGGGGCACCAAAGTGCAATCAAGAGCA-TGAATGTGCGA-T
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAG-ATGTGC-ATT
* *
930361 CAGGGGCGCCAAAGTGCAAACAAGGGCACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * *
930401 TAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* *** * * *
930441 CAGGGGTATTGAAGTACAAACAAGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * * *
930481 CAAGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
930521 CAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
930561 CAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
930601 CAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * * *
930641 CAGGGGTACCGAAGTACAAATAGGGGAACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
930681 TAGGGGTACCGAAGTACAAACAAGGGCACTGATGTGCA
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCA
930719 AATAAGGGCA
Statistics
Matches: 322, Mismatches: 34, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 320 0.99
41 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.31, T:0.16
Consensus pattern (40 bp):
CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
Found at i:930461 original size:80 final size:80
Alignment explanation
Indices: 930372--930718 Score: 496
Period size: 80 Copynumber: 4.3 Consensus size: 80
930362 AGGGGCGCCA
* * * * * * *
930372 AAGTGCAAACAAGGGCACAGATGTGCATTTAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
**
930437 CATTCAGGGGTATTG
66 CATTCAGGGGTACCG
* * *
930452 AAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCGAAGTGCAAACAGGGGCACAAATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
930517 CATTCAGGGGTACCG
66 CATTCAGGGGTACCG
*
930532 AAGTACAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
*
930597 CATTCAGGGGTATCG
66 CATTCAGGGGTACCG
* * * * *
930612 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAATAGGGGAACAGATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
*
930677 CATTTAGGGGTACCG
66 CATTCAGGGGTACCG
**
930692 AAGTACAAACAAGGGCACTGATGTGCA
1 AAGTACAAACAAGGGCACAAATGTGCA
930719 AATAAGGGCA
Statistics
Matches: 242, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 242 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.17
Consensus pattern (80 bp):
AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
CATTCAGGGGTACCG
Found at i:930541 original size:120 final size:120
Alignment explanation
Indices: 930372--930718 Score: 550
Period size: 120 Copynumber: 2.9 Consensus size: 120
930362 AGGGGCGCCA
* * * * * *
930372 AAGTGCAAACAAGGGCACAGATGTGCATTTAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
**
930437 CATTCAGGGGTATTGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCG
66 CATTCAGGGGTACCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCG
*
930492 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
* *
930557 CATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATTCAGGGGTATCG
66 CATTCAGGGGTACCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCG
* *
930612 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAATAGGGGAACAGATGTG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
* **
930677 CATTTAGGGGTACCGAAGTACAAACAAGGGCACTGATGTGCA
66 CATTCAGGGGTACCGAAGTACAAACAAGGGCACAAATGTGCA
930719 AATAAGGGCA
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 209 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.17
Consensus pattern (120 bp):
AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
CATTCAGGGGTACCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCG
Done.