Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 46 of 141
Found at i:13904508 original size:125 final size:124
Alignment explanation
Indices: 13904243--13904508 Score: 331
Period size: 125 Copynumber: 2.1 Consensus size: 124
13904233 GGCCAAACAT
* * * * *
13904243 GAACTATTGTAGAAAAAGAGTGTCGACGTAGGAGTTTTTTCATCAATTTTGCTAACAATGCATCT
1 GAACTATTGTAGAAAAAGAGTGTCCACATAGGAGTTTTTTCATAAATTTTACTAACAATGCATCC
* * * * *
13904308 TGGTTGAAGCTTTTTTGACACTATTTGTTCAGGAACGTCTTCTCAAAATTATTTTTTAG
66 TGCTTGAAGCATTTTTCACACTATTTGTTCAGGAACGTATTCTCAAAATTATTTTTCAG
** * *
13904367 GAACTACAGTAGAAAAAGAGTGTCCACAT-GAGAGCTTTTTTC-TGAAATTTTACTGACAGTGCA
1 GAACTATTGTAGAAAAAGAGTGTCCACATAG-GAG-TTTTTTCAT-AAATTTTACTAACAATGCA
*
13904430 TCCTGCTTGAAGCATTTTTCACATTATTTGTTCA-GAACCGTATTCTCAAAATTATTTTTCAG
63 TCCTGCTTGAAGCATTTTTCACACTATTTGTTCAGGAA-CGTATTCTCAAAATTATTTTTCAG
*
13904492 GAACTATTGTAAAAAAA
1 GAACTATTGTAGAAAAA
13904509 ACAAAATCCT
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
123 1 0.01
124 32 0.27
125 87 0.73
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (124 bp):
GAACTATTGTAGAAAAAGAGTGTCCACATAGGAGTTTTTTCATAAATTTTACTAACAATGCATCC
TGCTTGAAGCATTTTTCACACTATTTGTTCAGGAACGTATTCTCAAAATTATTTTTCAG
Found at i:13904589 original size:34 final size:34
Alignment explanation
Indices: 13904546--13904624 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 34
13904536 TCTCTAAACC
13904546 CTAAA-CCTAA-ACACAAT-ATTATTTTAAAAAAAA
1 CTAAACCCTAATACA-AATAATT-TTTTAAAAAAAA
** * *
13904579 CTAAACCCTAATTTAATTAATTTTTTAAAAATAA
1 CTAAACCCTAATACAAATAATTTTTTAAAAAAAA
13904613 CTAAACCCTAAT
1 CTAAACCCTAAT
13904625 TTTATTTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 5 0.13
34 30 0.77
35 4 0.10
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (34 bp):
CTAAACCCTAATACAAATAATTTTTTAAAAAAAA
Found at i:13904625 original size:34 final size:34
Alignment explanation
Indices: 13904567--13904697 Score: 147
Period size: 34 Copynumber: 3.8 Consensus size: 34
13904557 CACAATATTA
13904567 TTTTAAAAAAAACTAAACCCTAATTTAATTAATT
1 TTTTAAAAAAAACTAAACCCTAATTTAATTAATT
* * *
13904601 TTTTAAAAATAACTAAACCCTAATTTTATTTATT
1 TTTTAAAAAAAACTAAACCCTAATTTAATTAATT
*** *
13904635 TATTT-AAAACCCCTAAGCCCTAATTTAATTAATT
1 T-TTTAAAAAAAACTAAACCCTAATTTAATTAATT
* *
13904669 TTTAAAAAAGAACACTAAATCCTAATTTA
1 TTTTAAAAA-AA-ACTAAACCCTAATTTA
13904698 TTTTTTAAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
33 2 0.03
34 60 0.77
35 3 0.04
36 13 0.17
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.39
Consensus pattern (34 bp):
TTTTAAAAAAAACTAAACCCTAATTTAATTAATT
Found at i:13905407 original size:13 final size:13
Alignment explanation
Indices: 13905391--13905432 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
13905381 GAAATTTTTG
*
13905391 ACTTTTCAAAAGC
1 ACTTTTAAAAAGC
13905404 ACTTTTAAAAAGC
1 ACTTTTAAAAAGC
13905417 ACTTTTAAAAAGC
1 ACTTTTAAAAAGC
13905430 ACT
1 ACT
13905433 ACTGAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (13 bp):
ACTTTTAAAAAGC
Found at i:13905440 original size:26 final size:26
Alignment explanation
Indices: 13905391--13905442 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13905381 GAAATTTTTG
* **
13905391 ACTTTTCAAAAGCACTTTTAAAAAGC
1 ACTTTTAAAAAGCACTACTAAAAAGC
13905417 ACTTTTAAAAAGCACTACTGAAAAAG
1 ACTTTTAAAAAGCACTACT-AAAAAG
13905443 AGAAGCTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (26 bp):
ACTTTTAAAAAGCACTACTAAAAAGC
Found at i:13906717 original size:18 final size:19
Alignment explanation
Indices: 13906676--13906717 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
13906666 GGATTCATTA
*
13906676 AAGTT-GTGGAGTTTGTTG
1 AAGTTAGTGGAGTTAGTTG
13906694 AA-TTAGTGGAGTTAGTT-
1 AAGTTAGTGGAGTTAGTTG
13906711 AAGTTAG
1 AAGTTAG
13906718 CTGGGTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.40
Consensus pattern (19 bp):
AAGTTAGTGGAGTTAGTTG
Found at i:13919122 original size:22 final size:23
Alignment explanation
Indices: 13919074--13919125 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
13919064 GTTTTTAAAG
*
13919074 TTTTAAATATTGTCTAAAACATA
1 TTTTAAATATTGTATAAAACATA
* *
13919097 TTTTAATTATTTTATAAAA-ATA
1 TTTTAAATATTGTATAAAACATA
13919119 TTTTAAA
1 TTTTAAA
13919126 CTTTCTGTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTTAAATATTGTATAAAACATA
Found at i:13920238 original size:21 final size:22
Alignment explanation
Indices: 13920171--13920238 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 22
13920161 ATGAATATTA
* *
13920171 AATTTAAGATAAATATAATTTG
1 AATTGAAGATATATATAATTTG
* *
13920193 AATATTAAGATATATATTA-TT-
1 AAT-TGAAGATATATATAATTTG
*
13920214 AATTGAA-ATATATATGATTTG
1 AATTGAAGATATATATAATTTG
13920235 AATT
1 AATT
13920239 TATTTTACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 9 0.23
20 5 0.13
21 7 0.18
22 5 0.13
23 13 0.33
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (22 bp):
AATTGAAGATATATATAATTTG
Found at i:13924420 original size:8 final size:8
Alignment explanation
Indices: 13924408--13924440 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
13924398 TGGTTAAATG
13924408 ATTA-AAA
1 ATTATAAA
13924415 ATT-TAAA
1 ATTATAAA
13924422 ATTATAAA
1 ATTATAAA
13924430 ATTATAAA
1 ATTATAAA
13924438 ATT
1 ATT
13924441 TATCAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 9 0.38
8 15 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTATAAA
Found at i:13924946 original size:10 final size:10
Alignment explanation
Indices: 13924918--13924985 Score: 63
Period size: 10 Copynumber: 6.9 Consensus size: 10
13924908 TTAATGTTTC
13924918 TAATAATTTT-
1 TAAT-ATTTTA
*
13924928 TATTATTTTA
1 TAATATTTTA
13924938 TAATATTTTCA
1 TAATATTTT-A
13924949 T-AT-TTTTCA
1 TAATATTTT-A
13924958 TAATATTTTA
1 TAATATTTTA
*
13924968 TAATATTTCA
1 TAATATTTTA
13924978 TAA-ATTTT
1 TAATATTTT
13924986 TATCCTTTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
9 16 0.32
10 28 0.56
11 6 0.12
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (10 bp):
TAATATTTTA
Found at i:13924965 original size:12 final size:11
Alignment explanation
Indices: 13924931--13924985 Score: 68
Period size: 10 Copynumber: 5.5 Consensus size: 11
13924921 TAATTTTTAT
13924931 TATTTT-ATAA
1 TATTTTCATAA
13924941 TATTTTCAT-A
1 TATTTTCATAA
13924951 T-TTTTCATAA
1 TATTTTCATAA
13924961 TATTTT-ATAA
1 TATTTTCATAA
13924971 TA-TTTCATAA
1 TATTTTCATAA
13924981 -ATTTT
1 TATTTT
13924986 TATCCTTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
9 11 0.28
10 23 0.57
11 6 0.15
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTCATAA
Found at i:13924986 original size:20 final size:19
Alignment explanation
Indices: 13924922--13925013 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 19
13924912 TGTTTCTAAT
*
13924922 AATTTTTAT-TATTTTATA
1 AATTTTTATATATTTCATA
* *
13924940 ATATTTTCATATTTTTCAT-
1 A-ATTTTTATATATTTCATA
13924959 AATATTTTATAATATTTCATA
1 AAT-TTTTAT-ATATTTCATA
*
13924980 AATTTTTATCCT-TTTC-TA
1 AATTTTTAT-ATATTTCATA
13924998 AATTTTTATAATATTT
1 AATTTTTAT-ATATTT
13925014 AAATAATTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
18 15 0.25
19 20 0.34
20 21 0.36
21 3 0.05
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (19 bp):
AATTTTTATATATTTCATA
Found at i:13925023 original size:20 final size:19
Alignment explanation
Indices: 13924919--13925025 Score: 60
Period size: 20 Copynumber: 5.6 Consensus size: 19
13924909 TAATGTTTCT
*
13924919 AATAATTTTTATTATTTTA
1 AATAATTTTTATAATTTTA
* *
13924938 TAAT-ATTTTCAT-ATTTTT
1 -AATAATTTTTATAATTTTA
*
13924956 CATAATATTTTATAATATTT-
1 AATAAT-TTTTATAAT-TTTA
* ** *
13924976 CATAAATTTTTATCCTTTTC
1 AAT-AATTTTTATAATTTTA
*
13924996 TA-AATTTTTATAATATTTA
1 AATAATTTTTATAAT-TTTA
13925015 AATAATTTTTA
1 AATAATTTTTA
13925026 AGCTTAAACA
Statistics
Matches: 68, Mismatches: 11, Indels: 16
0.72 0.12 0.17
Matches are distributed among these distances:
17 2 0.03
18 17 0.25
19 19 0.28
20 24 0.35
21 6 0.09
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.59
Consensus pattern (19 bp):
AATAATTTTTATAATTTTA
Found at i:13927240 original size:13 final size:14
Alignment explanation
Indices: 13927214--13927242 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
13927204 ACAAACAAAG
13927214 AATTAAACCATTAT
1 AATTAAACCATTAT
13927228 AATTAAA-CATTAT
1 AATTAAACCATTAT
13927241 AA
1 AA
13927243 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:13932284 original size:9 final size:9
Alignment explanation
Indices: 13932270--13932445 Score: 166
Period size: 9 Copynumber: 20.0 Consensus size: 9
13932260 TAAGTATAAT
13932270 TAAGTTATG
1 TAAGTTATG
13932279 TAAGTTATG
1 TAAGTTATG
* * *
13932288 ATATGATATA
1 -TAAGTTATG
*
13932298 T-ATTTATG
1 TAAGTTATG
13932306 T-A-TTATG
1 TAAGTTATG
13932313 TAAGTTATG
1 TAAGTTATG
*
13932322 TAAGTTAAG
1 TAAGTTATG
*
13932331 TGAGTTATG
1 TAAGTTATG
13932340 TAAGTTATG
1 TAAGTTATG
*
13932349 TGAGTTATG
1 TAAGTTATG
13932358 TAAGTTATG
1 TAAGTTATG
* * *
13932367 ATATGATATA
1 -TAAGTTATG
*
13932377 T-ATTTATG
1 TAAGTTATG
13932385 T-A-TTATG
1 TAAGTTATG
13932392 TAAGTTATG
1 TAAGTTATG
*
13932401 TAAGTTAAG
1 TAAGTTATG
*
13932410 TGAGTTATG
1 TAAGTTATG
13932419 TAAGTTATG
1 TAAGTTATG
*
13932428 TGAGTTATG
1 TAAGTTATG
13932437 TAAGTTATG
1 TAAGTTATG
13932446 ATATGATATA
Statistics
Matches: 135, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
7 12 0.09
8 12 0.09
9 99 0.73
10 12 0.09
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:13932376 original size:79 final size:79
Alignment explanation
Indices: 13932272--13932479 Score: 375
Period size: 79 Copynumber: 2.6 Consensus size: 79
13932262 AGTATAATTA
13932272 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAAGTGAGTT
1 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAAGTGAGTT
13932337 ATGTAAGTTATGTG
66 ATGTAAGTTATGTG
13932351 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAAGTGAGTT
1 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAAGTGAGTT
13932416 ATGTAAGTTATGTG
66 ATGTAAGTTATGTG
* *
13932430 AGTTATGTAAGTTATGATATGATATATA--TAAGTTATTATGTATGTTATGT
1 AGTTATGTAAGTTATGATATGATATATATTTATG-TATTATGTAAGTTATGT
13932480 GGAAATTAGT
Statistics
Matches: 126, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
77 3 0.02
78 16 0.13
79 107 0.85
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (79 bp):
AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAAGTGAGTT
ATGTAAGTTATGTG
Found at i:13932654 original size:20 final size:21
Alignment explanation
Indices: 13932629--13932675 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
13932619 TATCCATACT
13932629 AATATAGGTTAT-ATATTAAA
1 AATATAGGTTATAATATTAAA
* *
13932649 AATATAGGTTTTAATATTTAA
1 AATATAGGTTATAATATTAAA
13932670 AATATA
1 AATATA
13932676 ATATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (21 bp):
AATATAGGTTATAATATTAAA
Found at i:13932791 original size:21 final size:20
Alignment explanation
Indices: 13932753--13932795 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
13932743 CATACTAATT
13932753 TAGGTTATATATTAAAAATA
1 TAGGTTATATATTAAAAATA
* *
13932773 TAGGTTTTAATATTTAAAATA
1 TAGGTTAT-ATATTAAAAATA
13932794 TA
1 TA
13932796 ATATATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (20 bp):
TAGGTTATATATTAAAAATA
Found at i:13932855 original size:120 final size:120
Alignment explanation
Indices: 13932542--13932861 Score: 568
Period size: 120 Copynumber: 2.7 Consensus size: 120
13932532 AGTAATAAGT
* *
13932542 TATTTAAAAATATAATATTTATAATTATGTTTAAAATTTAAAAAGTTATTAGTAATGAATTTGAA
1 TATTT-AAAATATAATATATATAATTATGTATAAAATTTAAAAAGTTATTAGTAATGAATTTGAA
*
13932607 ATATAGGTAACATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
65 ATATAGGTTACATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
*
13932663 TATTTAAAATATAATATATATAATTATGTATAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
1 TATTTAAAATATAATATATATAATTATGTATAAAATTTAAAAAGTTATTAGTAATGAATTTGAAA
* *
13932728 TATAGGTTAGATATCCATACTAATTTAGGTTATATATTAAAAATATAGGTTTTAA
66 TATAGGTTACATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
13932783 TATTTAAAATATAATATATATAATTATGTATAAAATTTAAAAAGTTATTAGTAATGAATTTGAAA
1 TATTTAAAATATAATATATATAATTATGTATAAAATTTAAAAAGTTATTAGTAATGAATTTGAAA
*
13932848 TATAGGTTATATAT
66 TATAGGTTACATAT
13932862 TAAAAATATA
Statistics
Matches: 191, Mismatches: 8, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
120 186 0.97
121 5 0.03
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (120 bp):
TATTTAAAATATAATATATATAATTATGTATAAAATTTAAAAAGTTATTAGTAATGAATTTGAAA
TATAGGTTACATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
Found at i:13932888 original size:21 final size:20
Alignment explanation
Indices: 13932840--13932900 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
13932830 TTAGTAATGA
* *
13932840 ATTTGAAATATAGGTTATAT
1 ATTTAAAATATAGATTATAT
* *
13932860 ATTAAAAATATAGATTTTAAT
1 ATTTAAAATATAGATTAT-AT
13932881 ATTTAAAATATA-A-TATAT
1 ATTTAAAATATAGATTATAT
13932899 AT
1 AT
13932901 AATTATTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
18 4 0.12
19 2 0.06
20 15 0.44
21 13 0.38
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATTTAAAATATAGATTATAT
Found at i:13933924 original size:9 final size:9
Alignment explanation
Indices: 13933910--13933940 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
13933900 GTGGGGATTC
13933910 AATTCGGTT
1 AATTCGGTT
*
13933919 AATTCGGGT
1 AATTCGGTT
13933928 AATTCGGTT
1 AATTCGGTT
13933937 AATT
1 AATT
13933941 TTTAACGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:13935129 original size:15 final size:15
Alignment explanation
Indices: 13935109--13935139 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13935099 CCAAATGAAG
13935109 AATCGAAGAACCAAA
1 AATCGAAGAACCAAA
*
13935124 AATCGAAGCACCAAA
1 AATCGAAGAACCAAA
13935139 A
1 A
13935140 CAAGTCCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.23, G:0.13, T:0.06
Consensus pattern (15 bp):
AATCGAAGAACCAAA
Found at i:13935971 original size:21 final size:21
Alignment explanation
Indices: 13935898--13935971 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
13935888 TCCTAGACCT
13935898 TAAACCCTAAACCATAAAT-C
1 TAAACCCTAAACCATAAATAC
* ** *
13935918 GTAAACCTTATTCCATAAACAC
1 -TAAACCCTAAACCATAAATAC
* *
13935940 TATACCATAAACCATAAATAC
1 TAAACCCTAAACCATAAATAC
*
13935961 CAAACCCTAAA
1 TAAACCCTAAA
13935972 ACCCTAAACT
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
21 39 0.98
22 1 0.03
ACGTcount: A:0.49, C:0.28, G:0.01, T:0.22
Consensus pattern (21 bp):
TAAACCCTAAACCATAAATAC
Found at i:13937131 original size:7 final size:7
Alignment explanation
Indices: 13937080--13937280 Score: 84
Period size: 7 Copynumber: 28.3 Consensus size: 7
13937070 GATATATTGC
13937080 AACCCTA
1 AACCCTA
*
13937087 AACCGTA
1 AACCCTA
* *
13937094 GACCCTG
1 AACCCTA
13937101 AACCCTA
1 AACCCTA
*
13937108 CA-CCTA
1 AACCCTA
*
13937114 AAACCTAA
1 AACCCT-A
13937122 AACCCTA
1 AACCCTA
*
13937129 AACCATA
1 AACCCTA
**
13937136 AACTATA
1 AACCCTA
13937143 AACCCTA
1 AACCCTA
* *
13937150 TACCATA
1 AACCCTA
*
13937157 AACCATA
1 AACCCTA
13937164 AACACC-A
1 AAC-CCTA
*
13937171 AACCTTAA
1 AACCCT-A
13937179 AACCCTA
1 AACCCTA
*
13937186 AACTTCTA
1 AAC-CCTA
*** *
13937194 GGTCTTA
1 AACCCTA
*
13937201 TAAGCCATA
1 -AA-CCCTA
*
13937210 AACACTA
1 AACCCTA
* *
13937217 AACTCTT
1 AACCCTA
*
13937224 AACACTA
1 AACCCTA
13937231 AACCCTA
1 AACCCTA
*
13937238 AACCTTA
1 AACCCTA
*
13937245 AACCCCA
1 AACCCTA
*
13937252 AACTCTA
1 AACCCTA
13937259 AA-CCTA
1 AACCCTA
*
13937265 TACCCTA
1 AACCCTA
*
13937272 AACACTA
1 AACCCTA
13937279 AA
1 AA
13937281 ATTAAAACTC
Statistics
Matches: 140, Mismatches: 45, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
6 10 0.07
7 109 0.78
8 18 0.13
9 3 0.02
ACGTcount: A:0.45, C:0.33, G:0.03, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:13938377 original size:188 final size:192
Alignment explanation
Indices: 13938048--13938595 Score: 589
Period size: 195 Copynumber: 2.9 Consensus size: 192
13938038 AATTATTTTT
* * * *
13938048 TTGCGGCATTTCCCAA-AAACGCCGCTAAT-TATCGATCTATTGTGGCATTTTTTGAAAAAGC-A
1 TTGCGGCATTTCTCAACTAGCGCCGCTAATGT-TCGATCTATTGCGGCATTTTTT-AAAAAGCGA
* * * * * *
13938110 CTGCTAATGCCACTAAAGCTAAACAAAAAAAAAGTCGTTTTGCTCAAATTTTTTGTGCTGTTTTA
64 C-ACTAAAGCCAATAAAGCTCAACAAAAAAAAAGTCGTTTTGCTCAACTTTTTTCTGCTGTTTTA
* * *
13938175 CAAAAAGTGCCGCTAATTCCTGATCTATAGCGGCGTTTCTTATAAAGCG-C-C-A-C-CGATCTA
128 CAAAAAGCGCCGCTAATTCCTGATCTATAGCGGCATTTCTTATAAAGCGCCACAAGCTCAATCTA
* * * ** *
13938235 TTGTGGCATTTCTCAAGTTGCGCCGCTAATGTTCGATCTATTGCAACATTTTTTAAAAAGCGTCA
1 TTGCGGCATTTCTCAACTAGCGCCGCTAATGTTCGATCTATTGCGGCATTTTTTAAAAAGCGACA
*
13938300 CTAAAGCCAATAAAGCTCAACAAAAAAAGAAGTTGTTTTGCTCAACTTTTTTACTG-TGTTTTA-
66 CTAAAGCCAATAAAGCTCAACAAAAAAA-AAGTCGTTTTGCTCAACTTTTTT-CTGCTGTTTTAC
* * **
13938363 AAACAAGCGCCGCTAATTCTTGATCTTTATTGGCATTTCTTATAAAGCGCCACTAAAGCTCAATC
129 AAA-AAGCGCCGCTAATTCCTGATCTATAGCGGCATTTCTTATAAAGCGCCAC--AAGCTCAATC
13938428 TA
191 TA
* * * ** *
13938430 TTGCGGCGTTTCTCAACTAGCGTCGCTAATGTTCGATCTATTGCGGCGTTTTTTAGTAAGCGCCA
1 TTGCGGCATTTCTCAACTAGCGCCGCTAATGTTCGATCTATTGCGGCATTTTTTAAAAAGCGACA
* * *
13938495 CTAAAGCCAATAAAGCTCAACAAAAAACAAAGTCGTTTTGCTCAACATTTTTGCGGC-GCTTTAC
66 CTAAAGCCAATAAAGCTCAACAAAAAA-AAAGTCGTTTTGCTCAAC-TTTTTTCTGCTGTTTTAC
* * *
13938559 ATATAGCGCCGCTAATT-CTCGATCTATTGCGGCATTT
129 AAAAAGCGCCGCTAATTCCT-GATCTATAGCGGCATTT
13938596 TTTGAAAAGT
Statistics
Matches: 298, Mismatches: 45, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
187 49 0.16
188 97 0.33
189 4 0.01
190 1 0.00
193 1 0.00
194 2 0.01
195 136 0.46
196 8 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (192 bp):
TTGCGGCATTTCTCAACTAGCGCCGCTAATGTTCGATCTATTGCGGCATTTTTTAAAAAGCGACA
CTAAAGCCAATAAAGCTCAACAAAAAAAAAGTCGTTTTGCTCAACTTTTTTCTGCTGTTTTACAA
AAAGCGCCGCTAATTCCTGATCTATAGCGGCATTTCTTATAAAGCGCCACAAGCTCAATCTA
Found at i:13938442 original size:40 final size:40
Alignment explanation
Indices: 13938398--13938505 Score: 105
Period size: 40 Copynumber: 2.7 Consensus size: 40
13938388 TTTATTGGCA
13938398 TTTCTTATAAAGCGCCACTAAAGCTCAATCTATTGCGGCG
1 TTTCTTATAAAGCGCCACTAAAGCTCAATCTATTGCGGCG
* * * * * * *
13938438 TTTCTCA-ACTAGCGTCGCTAATGTTCGATCTATTGCGGCG
1 TTTCTTATA-AAGCGCCACTAAAGCTCAATCTATTGCGGCG
*
13938478 TTTTTTAGT-AAGCGCCACTAAAGC-CAAT
1 TTTCTTA-TAAAGCGCCACTAAAGCTCAAT
13938506 AAAGCTCAAC
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
39 4 0.08
40 46 0.92
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (40 bp):
TTTCTTATAAAGCGCCACTAAAGCTCAATCTATTGCGGCG
Found at i:13938936 original size:20 final size:21
Alignment explanation
Indices: 13938899--13938939 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
13938889 ACCTAGGGTT
13938899 CTTGAAGCTTAGAAAGAGAAA
1 CTTGAAGCTTAGAAAGAGAAA
*
13938920 CTTGAAGC-TAGAGAGAGAAA
1 CTTGAAGCTTAGAAAGAGAAA
13938940 GCTTCACTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.46, C:0.10, G:0.27, T:0.17
Consensus pattern (21 bp):
CTTGAAGCTTAGAAAGAGAAA
Found at i:13940435 original size:42 final size:42
Alignment explanation
Indices: 13940398--13940478 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
13940388 ATATTTTATT
* *
13940398 TTATTTTTTAGTAGTTTATTAGAATAATGGAATTATTTTTCC
1 TTATGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTTCC
13940440 TTATGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTT
1 TTATGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTT
13940479 CCAATTAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.53
Consensus pattern (42 bp):
TTATGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTTCC
Found at i:13941002 original size:26 final size:26
Alignment explanation
Indices: 13940968--13941022 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
13940958 CCAACAACTA
13940968 TTTTATGTTTAAATTTTGTTTCTAAT
1 TTTTATGTTTAAATTTTGTTTCTAAT
*
13940994 TTTTATGTTTAAATTTTGTTTCTGAT
1 TTTTATGTTTAAATTTTGTTTCTAAT
13941020 TTT
1 TTT
13941023 GATAAGGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.04, G:0.09, T:0.67
Consensus pattern (26 bp):
TTTTATGTTTAAATTTTGTTTCTAAT
Found at i:13943992 original size:19 final size:19
Alignment explanation
Indices: 13943946--13943993 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
13943936 AAATATATTT
13943946 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
13943964 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
13943983 TAAGTTTTATT
1 TAAATTTTATT
13943994 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:13944067 original size:42 final size:42
Alignment explanation
Indices: 13944016--13944098 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
13944006 ATATTTTATT
* *
13944016 TTATCTTTTAGTAGTTTCTTAAAAGAATGGAATTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAAAAGAAAGGAATTATTTTCCC
* * *
13944058 TTATGTTTTAGTAGTTTATTAGAATAAAGGAATTATTTTCC
1 TTATCTTTTAGTAGTTTATTAAAAGAAAGGAATTATTTTCC
13944099 AATTAGGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.48
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAAAAGAAAGGAATTATTTTCCC
Found at i:13950992 original size:69 final size:68
Alignment explanation
Indices: 13950876--13951200 Score: 366
Period size: 69 Copynumber: 4.7 Consensus size: 68
13950866 TTCACCTGTG
* * * * * * **
13950876 GGAGTTTTGCTCACGCTAACTGTGTTGAAGGTTAC-AGCTCTTCACCTGCGAACCTTAATAAAAC
1 GGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGA-CTCTTCACCTGCGAGCCTTAATATGAC
13950940 AGTT
65 AGTT
* *
13950944 GGCAGCTTTGCTCTCGCTAACTGTGCTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGAT
1 GG-AGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGAC
13951009 AGTT
65 AGTT
* * * * * *
13951013 GAGAGCTTTGTTTTCG-TAGCTGTGTTAGAGGATACGACTCTTCACCTGCGAGCCTTAATATGAC
1 G-GAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGAC
13951077 AGTT
65 AGTT
* * * * * * *
13951081 AGGAGCTTTGCTCACACTAACTATGTTGGAGGCTGTGGCTTTTCACCTGCCAGCCTTAATATGAC
1 -GGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGAC
*
13951146 AGCT
65 AGTT
*
13951150 GGAAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGATTCTTCACCTGCG
1 GG-AGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGACTCTTCACCTGCG
13951201 GGAACTTTAC
Statistics
Matches: 211, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
68 60 0.28
69 149 0.71
70 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (68 bp):
GGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGACA
GTT
Found at i:13951141 original size:137 final size:138
Alignment explanation
Indices: 13950881--13951200 Score: 371
Period size: 137 Copynumber: 2.3 Consensus size: 138
13950871 CTGTGGGAGT
* *
13950881 TTTGCTCACGCTAACTGTGTT-GAAGGTTAC-AGCTCTTCACCTGCGAACCTTAATAAAACAGTT
1 TTTGCTCTCGCTAACTGTGTTAG-AGGATACGA-CTCTTCACCTGCGAACCTTAATAAAACAGTT
* * * * *
13950944 GGCAGCTTTGCTCTCGCTAACTGTGCTGGAGGCTGCGACTCTTCACCTGCGAGCCTTAATATGAT
64 GGCAGCTTTGCTCACACTAACTATGCTGGAGGCTGCGACTCTTCACCTGCCAGCCTTAATATGAC
*
13951009 AG-TTGAGAGC
129 AGCTGGA-AGC
* * * * **
13951019 TTTGTTTTCG-TAGCTGTGTTAGAGGATACGACTCTTCACCTGCGAGCCTTAATATGACAGTTAG
1 TTTGCTCTCGCTAACTGTGTTAGAGGATACGACTCTTCACCTGCGAACCTTAATAAAACAGTT-G
* * * *
13951083 G-AGCTTTGCTCACACTAACTATGTTGGAGGCTGTGGCTTTTCACCTGCCAGCCTTAATATGACA
65 GCAGCTTTGCTCACACTAACTATGCTGGAGGCTGCGACTCTTCACCTGCCAGCCTTAATATGACA
13951147 GCTGGAAGC
130 GCTGGAAGC
* * * *
13951156 TTTGCTCTCGCTAACTGTGTTGGAGGCTGCGATTCTTCACCTGCG
1 TTTGCTCTCGCTAACTGTGTTAGAGGATACGACTCTTCACCTGCG
13951201 GGAACTTTAC
Statistics
Matches: 152, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
137 109 0.72
138 43 0.28
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (138 bp):
TTTGCTCTCGCTAACTGTGTTAGAGGATACGACTCTTCACCTGCGAACCTTAATAAAACAGTTGG
CAGCTTTGCTCACACTAACTATGCTGGAGGCTGCGACTCTTCACCTGCCAGCCTTAATATGACAG
CTGGAAGC
Found at i:13951246 original size:50 final size:49
Alignment explanation
Indices: 13951166--13951297 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 49
13951156 TTTGCTCTCG
* *
13951166 CTAACTGTGTTGGAGGCTGCGATTCTTCACCTGCGGGAACTTTACTCACA
1 CTAACTGTGTTGAAGGCTGCG-CTCTTCACCTGCGGGAACTTTACTCACA
* * *
13951216 CTAATTGTGTTGAAGGCTGCAGCTCTTCACCTGCGGGAGCTTTGCTCACA
1 CTAACTGTGTTGAAGGCTGC-GCTCTTCACCTGCGGGAACTTTACTCACA
* *
13951266 CTAACTGTGTTGAAGGTTGTGGCTCTTCACCT
1 CTAACTGTGTTGAAGGCTG-CGCTCTTCACCT
13951298 ACAAGCCTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
50 71 0.99
51 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (49 bp):
CTAACTGTGTTGAAGGCTGCGCTCTTCACCTGCGGGAACTTTACTCACA
Found at i:13951364 original size:69 final size:69
Alignment explanation
Indices: 13951250--13951458 Score: 249
Period size: 69 Copynumber: 3.0 Consensus size: 69
13951240 CTTCACCTGC
* * * * *
13951250 GGGAGCTTTGCTCACACTAACTGTGTTGAAGGTTGTGGCTCTTCACCTACAAGCCTTAATATGAC
1 GGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTACGAGCCTTAATATGAC
*
13951315 AATT
66 AACT
* *
13951319 GGGAGCTTTGCTCTCGCTAACTATGTTGGAGGCTGTGGCTTTTCACCTACGAGCCTTAATATGAT
1 GGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTACGAGCCTTAATATGA-
*
13951384 C-GCT
65 CAACT
* * * * ** * *
13951388 GAGAGTTTTGCTCTCGTTAACTGTGTTGGACGCTACGGCTCTTCACCTGCGAGCCTTACTATGAC
1 GGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTACGAGCCTTAATATGAC
13951453 AACT
66 AACT
13951457 GG
1 GG
13951459 AAGTGTAACA
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
68 1 0.01
69 115 0.98
70 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (69 bp):
GGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTACGAGCCTTAATATGAC
AACT
Found at i:13954341 original size:69 final size:69
Alignment explanation
Indices: 13954226--13954391 Score: 215
Period size: 69 Copynumber: 2.4 Consensus size: 69
13954216 TTGTTACAAT
** * * *
13954226 GAGCTTTGCTCTCATTAACAGTGTTGGAGGCTACGACTCTTCACCTACGAGCCATAATTTGACAG
1 GAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCACGACTCTTCACCTACGAGCCATAATATGACAG
*
13954291 TTGG
66 CTGG
* * * * * *
13954295 GAGGTTTGCTCTTGCTAACTGTGTTGGAGGCCGCGGCTCTTCACCTACGAGCCTTAATATGTCAG
1 GAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCACGACTCTTCACCTACGAGCCATAATATGACAG
13954360 CTGG
66 CTGG
*
13954364 GAGCTTTGCTCTCGCTAATTGTGTTGGA
1 GAGCTTTGCTCTCGCTAACTGTGTTGGA
13954392 CATCAAAGGT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.32
Consensus pattern (69 bp):
GAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCACGACTCTTCACCTACGAGCCATAATATGACAG
CTGG
Found at i:13962128 original size:10 final size:9
Alignment explanation
Indices: 13962112--13962171 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
13962102 AAAAAAATAC
13962112 TAATAAAAA
1 TAATAAAAA
13962121 TGAATAAAAA
1 T-AATAAAAA
13962131 TAAT-AAAA
1 TAATAAAAA
* *
13962139 -ACTAAAAC
1 TAATAAAAA
13962147 TAA-AAAAA
1 TAATAAAAA
*
13962155 TAATAACAA
1 TAATAAAAA
*
13962164 GAATAAAA
1 TAATAAAA
13962172 CAAAAAATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
7 2 0.05
8 14 0.35
9 15 0.38
10 9 0.22
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.18
Consensus pattern (9 bp):
TAATAAAAA
Found at i:13962139 original size:33 final size:32
Alignment explanation
Indices: 13962097--13962176 Score: 83
Period size: 33 Copynumber: 2.5 Consensus size: 32
13962087 ATTAATAACG
* *
13962097 AGAAGAAAAA-AATACTAATAAAAATGAATAAAA
1 AGAATAAAAACAAAACTAA-AAAAAT-AATAAAA
* *
13962130 ATAATAAAAACTAAAACTAAAAAAATAATAACA
1 AGAATAAAAAC-AAAACTAAAAAAATAATAAAA
13962163 AGAAT-AAAACAAAA
1 AGAATAAAAACAAAA
13962177 AATAACACAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 4 0.10
32 5 0.12
33 18 0.45
34 6 0.15
35 7 0.17
ACGTcount: A:0.74, C:0.06, G:0.05, T:0.15
Consensus pattern (32 bp):
AGAATAAAAACAAAACTAAAAAAATAATAAAA
Found at i:13962153 original size:24 final size:25
Alignment explanation
Indices: 13962126--13962195 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
13962116 AAAAATGAAT
*
13962126 AAAAATAATAA-AA-ACTAAAACTAA
1 AAAAATAATAACAAGAATAAAAC-AA
13962150 AAAAATAATAACAAGAATAAAAC-A
1 AAAAATAATAACAAGAATAAAACAA
*
13962174 AAAAATAA-CACAAGAATCAAAA
1 AAAAATAATAACAAGAAT-AAAA
13962196 GAAATATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.20
24 24 0.59
25 2 0.05
26 7 0.17
ACGTcount: A:0.74, C:0.10, G:0.03, T:0.13
Consensus pattern (25 bp):
AAAAATAATAACAAGAATAAAACAA
Found at i:13962610 original size:13 final size:13
Alignment explanation
Indices: 13962589--13962625 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
13962579 TGTTGGACCT
*
13962589 CACGGCCGTGTCA
1 CACGCCCGTGTCA
13962602 CACGCCCGTGTCA
1 CACGCCCGTGTCA
*
13962615 CACACCCGTGT
1 CACGCCCGTGT
13962626 GCGATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.16, C:0.43, G:0.24, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTCA
Found at i:13965882 original size:21 final size:21
Alignment explanation
Indices: 13965856--13965897 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13965846 GCACTAACAC
13965856 CAATGGTGAAACCATGGCTTA
1 CAATGGTGAAACCATGGCTTA
13965877 CAATGGTGAAACCATGGCTTA
1 CAATGGTGAAACCATGGCTTA
13965898 AAATCTTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (21 bp):
CAATGGTGAAACCATGGCTTA
Found at i:13968140 original size:25 final size:26
Alignment explanation
Indices: 13968112--13968163 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13968102 TCAATAATTG
* *
13968112 TTTAAATTTAA-TTAAATATTAATAT
1 TTTAAATTGAATTTAAAAATTAATAT
*
13968137 TTTACATTGAATTTAAAAATTAATAT
1 TTTAAATTGAATTTAAAAATTAATAT
13968163 T
1 T
13968164 AATTTGATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TTTAAATTGAATTTAAAAATTAATAT
Found at i:13972475 original size:23 final size:23
Alignment explanation
Indices: 13972449--13972497 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
13972439 TCTTAAACTT
*
13972449 TGCACCTATATCATTAGTTGATG
1 TGCACCTACATCATTAGTTGATG
*
13972472 TGCACGTACATCATTAGTTGATG
1 TGCACCTACATCATTAGTTGATG
13972495 TGC
1 TGC
13972498 TTATTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (23 bp):
TGCACCTACATCATTAGTTGATG
Found at i:13976284 original size:24 final size:24
Alignment explanation
Indices: 13976244--13976297 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
13976234 AATTTATGGA
* *
13976244 TCACACGGCCTGAGACACGGGTTG
1 TCACACGACCTGAGACACGGGCTG
*
13976268 TCACACGACCT-AGGACATGGGCTG
1 TCACACGACCTGA-GACACGGGCTG
13976292 TCACAC
1 TCACAC
13976298 AGCTGTGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (24 bp):
TCACACGACCTGAGACACGGGCTG
Found at i:13977794 original size:19 final size:19
Alignment explanation
Indices: 13977758--13977802 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
13977748 TTCCACTTAT
13977758 ATTAATTAAAGATGGATTAA
1 ATTAA-TAAAGATGGATTAA
*
13977778 GTTAATAAAGTAT-GATTAA
1 ATTAATAAAG-ATGGATTAA
13977797 ATTAAT
1 ATTAAT
13977803 TTAATTAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (19 bp):
ATTAATAAAGATGGATTAA
Found at i:13978588 original size:285 final size:287
Alignment explanation
Indices: 13978031--13978610 Score: 862
Period size: 285 Copynumber: 2.0 Consensus size: 287
13978021 TACCAATTTG
* * * * *
13978031 TAAAATTGTTAAAGTTTTAAAAAGTTCCCATTGTTGATTTCTTGAAGAATTTGGTGTGAAATTGA
1 TAAAACTGATAAAGATTTAAAAAGTTCCCATTATTGATTTCTTAAAGAATTTGGTGTGAAATTGA
* ** *
13978096 TATATTTTAAGTTTAGATTATAAAAAAGACTAGATTGTGGCATTTAATTGTTAGTTTTGTACATA
66 TATATTTTAAGCTTAGATTATAAAAAAGACTAGATTGTAACATTTAATTGTTAGTTTTGCACATA
* * * * *
13978161 TGGACTAAAGTGAATAAAATGTGAAATTGTTGTGAAATTTCGGTATAAATAGAAAGTAGAGGGTC
131 TAGACTAAAGTGAATAAAATGTG-AACTGTTATGAAATTTCAGTATAAATAGAAAATAGAGGGTC
* *
13978226 CCTAATGAATGTATTTTAAATCAGATTTTAAATCGAGGTTAGGAATTGGAAGTTATTGCTATTTT
195 CCTAATGAATGTATTTGAAATCAGATTTTAAATCGAGGTTAGGAATTGGAAGTTATTGCTATTTC
*
13978291 GAATTTAGGGACTAAATTGAATAAAATA
260 GAATTCAGGGACTAAATTGAATAAAATA
* * * *
13978319 TAAAACTGATAAAGATTTAGAAAGTTTCCTTTATTGATTTCTTAAATAATTTGGTGT-AAACTTG
1 TAAAACTGATAAAGATTTAAAAAGTTCCCATTATTGATTTCTTAAAGAATTTGGTGTGAAA-TTG
* *
13978383 ATATA-TTTAAGCTTAGATTATGAAAAAGGCTAGATTGTAACATTTAATTGTTAGTTTTGCACAT
65 ATATATTTTAAGCTTAGATTATAAAAAAGACTAGATTGTAACATTTAATTGTTAGTTTTGCACAT
*
13978447 ATAGACTAAAGTGAATAAAATGTG-ACTGTTATGAAATTTTAGTATAAATAGAAAATAGAGGGTC
130 ATAGACTAAAGTGAATAAAATGTGAACTGTTATGAAATTTCAGTATAAATAGAAAATAGAGGGTC
*
13978511 CCTAATGAATGTATTTGAAGTCAGATTTTAAA-CTGAGGTTAGGAATTGGAAGTTATTGCTATTT
195 CCTAATGAATGTATTTGAAATCAGATTTTAAATC-GAGGTTAGGAATTGGAAGTTATTGCTATTT
* *
13978575 CGAATTCAGGGACTAAATTGAATCAAATG
259 CGAATTCAGGGACTAAATTGAATAAAATA
13978604 TAAAACT
1 TAAAACT
13978611 TTAGGAGTAC
Statistics
Matches: 263, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
284 1 0.00
285 127 0.48
287 79 0.30
288 56 0.21
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (287 bp):
TAAAACTGATAAAGATTTAAAAAGTTCCCATTATTGATTTCTTAAAGAATTTGGTGTGAAATTGA
TATATTTTAAGCTTAGATTATAAAAAAGACTAGATTGTAACATTTAATTGTTAGTTTTGCACATA
TAGACTAAAGTGAATAAAATGTGAACTGTTATGAAATTTCAGTATAAATAGAAAATAGAGGGTCC
CTAATGAATGTATTTGAAATCAGATTTTAAATCGAGGTTAGGAATTGGAAGTTATTGCTATTTCG
AATTCAGGGACTAAATTGAATAAAATA
Found at i:13983527 original size:18 final size:18
Alignment explanation
Indices: 13983489--13983524 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
13983479 TTATTATATC
*
13983489 ATAAGATAATATTTTATA
1 ATAAGATAAAATTTTATA
13983507 ATAA-ATAAAATTTTATA
1 ATAAGATAAAATTTTATA
13983524 A
1 A
13983525 ATAGTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
ATAAGATAAAATTTTATA
Found at i:13983667 original size:23 final size:23
Alignment explanation
Indices: 13983641--13983691 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
13983631 AGATTTGAAC
*
13983641 AAATACTCATATT-TATATTATTA
1 AAATACTCATATTATATACTA-TA
* *
13983664 AAATATTTATATTATATACTATA
1 AAATACTCATATTATATACTATA
13983687 AAATA
1 AAATA
13983692 TTTATAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATACTCATATTATATACTATA
Found at i:13983692 original size:23 final size:23
Alignment explanation
Indices: 13983649--13983697 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
13983639 ACAAATACTC
*
13983649 ATATTTATATTATTAAAATATTT
1 ATATTTATACTATTAAAATATTT
13983672 ATATTATATACTA-TAAAATATTT
1 ATATT-TATACTATTAAAATATTT
13983695 ATA
1 ATA
13983698 AAATATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATATTTATACTATTAAAATATTT
Found at i:13983703 original size:23 final size:23
Alignment explanation
Indices: 13983662--13983709 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
13983652 TTTATATTAT
** *
13983662 TAAAATATTTATATTATATACTA
1 TAAAATATTTATAAAATATAATA
13983685 TAAAATATTTATAAAATATAATA
1 TAAAATATTTATAAAATATAATA
13983708 TA
1 TA
13983710 TATTTATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TAAAATATTTATAAAATATAATA
Found at i:13989470 original size:20 final size:19
Alignment explanation
Indices: 13989430--13989467 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
13989420 TTAAATATGT
*
13989430 TTTAATTATCATTACATAA
1 TTTAATTATAATTACATAA
13989449 TTTAAGTTATAATTA-ATAA
1 TTTAA-TTATAATTACATAA
13989468 ATTATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAATTATAATTACATAA
Found at i:13991104 original size:18 final size:19
Alignment explanation
Indices: 13991064--13991104 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
13991054 TATTAACTAT
*
13991064 AAAAAAATTGAAACAAAGA
1 AAAAAAATGGAAACAAAGA
13991083 AAAAAAATGGAGAA-AAAGA
1 AAAAAAATGGA-AACAAAGA
13991102 AAA
1 AAA
13991105 TCAAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (19 bp):
AAAAAAATGGAAACAAAGA
Found at i:13991901 original size:19 final size:18
Alignment explanation
Indices: 13991855--13991897 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
13991845 ATACTGAATA
*
13991855 TTTATATTTATTTTAATT
1 TTTATAATTATTTTAATT
*
13991873 TTTATAATTATTTTTATT
1 TTTATAATTATTTTAATT
13991891 TTTATAA
1 TTTATAA
13991898 ATTAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTATAATTATTTTAATT
Found at i:13992760 original size:19 final size:19
Alignment explanation
Indices: 13992735--13992799 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
13992725 TAGAATTTTT
13992735 TTATAAAAATCGTAAAAAA
1 TTATAAAAATCGTAAAAAA
* *
13992754 ATATAAAAAAT--TATAAAAT
1 TTAT-AAAAATCGTA-AAAAA
13992773 TTATAAAAATCGTAAAAAA
1 TTATAAAAATCGTAAAAAA
13992792 TTATAAAA
1 TTATAAAA
13992800 TATATAGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 8 0.21
19 22 0.58
20 8 0.21
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (19 bp):
TTATAAAAATCGTAAAAAA
Found at i:13992761 original size:9 final size:9
Alignment explanation
Indices: 13992749--13992818 Score: 54
Period size: 10 Copynumber: 7.7 Consensus size: 9
13992739 AAAAATCGTA
13992749 AAAAAATAT
1 AAAAAATAT
13992758 AAAAAAT-T
1 AAAAAATAT
* *
13992766 ATAAAATTT
1 AAAAAATAT
*
13992775 ATAAAAATCGT
1 A-AAAAAT-AT
13992786 AAAAAAT-T
1 AAAAAATAT
*
13992794 ATAAAATAT
1 AAAAAATAT
*
13992803 ATAGAAATAT
1 A-AAAAATAT
13992813 AAAAAA
1 AAAAAA
13992819 ATTATAAAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
8 14 0.29
9 15 0.31
10 18 0.37
11 2 0.04
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (9 bp):
AAAAAATAT
Found at i:13992780 original size:28 final size:27
Alignment explanation
Indices: 13992750--13992836 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 27
13992740 AAAATCGTAA
13992750 AAAAATATAAAAAATTATAAAATTTAT
1 AAAAATATAAAAAATTATAAAATTTAT
* *
13992777 AAAAATCGTAAAAAATTATAAAATATAT
1 AAAAAT-ATAAAAAATTATAAAATTTAT
* *
13992805 AGAAATATAAAAAAATTATAAAGTTTTAT
1 AAAAATAT-AAAAAATTATAAA-ATTTAT
13992834 AAA
1 AAA
13992837 GTTGTAAGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 7 0.14
28 37 0.74
29 6 0.12
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (27 bp):
AAAAATATAAAAAATTATAAAATTTAT
Found at i:13992819 original size:38 final size:38
Alignment explanation
Indices: 13992739--13992820 Score: 112
Period size: 38 Copynumber: 2.2 Consensus size: 38
13992729 ATTTTTTTAT
* *
13992739 AAAAATCGTAAAAAAATATAAAAAATTATAAAATTTAT
1 AAAAATCGTAAAAAAATATAAAAAATTATAAAATATAA
* *
13992777 AAAAATCGTAAAAAATTATAAAATA-TATAGAAATATAA
1 AAAAATCGTAAAAAAATATAAAAAATTATA-AAATATAA
13992815 AAAAAT
1 AAAAAT
13992821 TATAAAGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 4 0.10
38 35 0.90
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (38 bp):
AAAAATCGTAAAAAAATATAAAAAATTATAAAATATAA
Found at i:13992824 original size:19 final size:18
Alignment explanation
Indices: 13992751--13992826 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 18
13992741 AAATCGTAAA
13992751 AAAATAT-AAAAAATTAT
1 AAAATATAAAAAAATTAT
* * **
13992768 AAAATTTATAAAAATCGT
1 AAAATATAAAAAAATTAT
* * *
13992786 AAAAAATTATAAAATATAT
1 AAAATATAAAAAAAT-TAT
13992805 AGAAATATAAAAAAATTAT
1 A-AAATATAAAAAAATTAT
13992824 AAA
1 AAA
13992827 GTTTTATAAA
Statistics
Matches: 42, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
17 6 0.14
18 19 0.45
19 6 0.14
20 11 0.26
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAATATAAAAAAATTAT
Found at i:13993312 original size:87 final size:85
Alignment explanation
Indices: 13993201--13993401 Score: 242
Period size: 87 Copynumber: 2.3 Consensus size: 85
13993191 ACTTTTTAAT
* * * * ** *
13993201 AAAAGCAGGGGCTTAATTGCTTTTTTGAAAAATTTTGAGGGTTTTTTTTGATGCATTTTGAAAGT
1 AAAAACAGGGGCTTAATTGCTTTTTTCAAAAAGTCTGAGGG-CCTGTTTGATGCATTTTGAAAGT
*
13993266 TCAAGTACCT-AATTGAGTGAA
65 TCAAGT-CCTCAATTGAATGAA
*
13993287 AAAAATCAGGGGCTTAATTGCTTTTTTTCAAGAAGTCTGAGGGCCTGTTTGATGCATTTTGAAAG
1 AAAAA-CAGGGGCTTAATTGC-TTTTTTCAAAAAGTCTGAGGGCCTGTTTGATGCATTTTGAAAG
*
13993352 TTCAAGTGCTCAATTGAATGAA
64 TTCAAGTCCTCAATTGAATGAA
*
13993374 AAAAAAAGAGGAGCTTAATTGCTTTTTT
1 AAAAACAG-GG-GCTTAATTGCTTTTTT
13993402 TTTTAAGTTT
Statistics
Matches: 99, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
86 8 0.08
87 64 0.65
88 27 0.27
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (85 bp):
AAAAACAGGGGCTTAATTGCTTTTTTCAAAAAGTCTGAGGGCCTGTTTGATGCATTTTGAAAGTT
CAAGTCCTCAATTGAATGAA
Found at i:13993621 original size:14 final size:15
Alignment explanation
Indices: 13993591--13993628 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
13993581 CCAGTGAATG
*
13993591 AAAATATTTTTATTA
1 AAAATATATTTATTA
13993606 AAAATATATTTA-TA
1 AAAATATATTTATTA
13993620 AAAATATAT
1 AAAATATAT
13993629 CAATAAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAATATATTTATTA
Found at i:13996068 original size:19 final size:19
Alignment explanation
Indices: 13996044--13996097 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
13996034 AATCTTCAAG
13996044 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13996063 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13996082 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
13996098 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13996088 original size:38 final size:40
Alignment explanation
Indices: 13996044--13996120 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
13996034 AATCTTCAAG
13996044 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
13996082 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
13996121 GATTTAATTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:13996348 original size:23 final size:23
Alignment explanation
Indices: 13996304--13996348 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
13996294 TCTTATTTTG
* *
13996304 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
13996327 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
13996349 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14000616 original size:26 final size:26
Alignment explanation
Indices: 14000587--14000636 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14000577 CCAATGATTC
*
14000587 GGGGAATTAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
14000613 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
14000637 CTTCACATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.18
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTT
Found at i:14000674 original size:42 final size:42
Alignment explanation
Indices: 14000615--14000718 Score: 208
Period size: 42 Copynumber: 2.5 Consensus size: 42
14000605 AACCCCTTGG
14000615 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
14000657 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
14000699 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
14000719 ACCAATGGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
Found at i:14000674 original size:101 final size:102
Alignment explanation
Indices: 14000413--14000676 Score: 449
Period size: 101 Copynumber: 2.6 Consensus size: 102
14000403 TGATTCGGGA
* *
14000413 AATCAGCACTTAGCAACCCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAACCACAA
1 AATCAGCACTTAGCAACCCCCTTCACATTTAAA-ATATGGTGGAATCAGCACTTAGCAACCACAA
14000478 ATGATTCAGGGAATCAGCACTTAGCAACCCCTTGGGGG
65 ATGATTCAGGGAATCAGCACTTAGCAACCCCTTGGGGG
* *
14000516 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATATGATGGAATCAGCACTTAGCAACCACCAA
1 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATATGGTGGAATCAGCACTTAGCAACCACAAA
* *
14000581 TGATTCGGGGAATTAGCACTTAGCAACCCCTT-GGGG
66 TGATTCAGGGAATCAGCACTTAGCAACCCCTTGGGGG
*
14000617 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATATGGTGGAATCAGCACTTAGCAACC
14000677 CCCTTCACAT
Statistics
Matches: 153, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
101 62 0.41
102 60 0.39
103 31 0.20
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (102 bp):
AATCAGCACTTAGCAACCCCCTTCACATTTAAAATATGGTGGAATCAGCACTTAGCAACCACAAA
TGATTCAGGGAATCAGCACTTAGCAACCCCTTGGGGG
Found at i:14000702 original size:143 final size:144
Alignment explanation
Indices: 14000514--14000783 Score: 479
Period size: 143 Copynumber: 1.9 Consensus size: 144
14000504 ACCCCTTGGG
*
14000514 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATATGATGGAATCAGCACTTAGCAACCACC
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
** *
14000579 AATGATTCGGGGAATTAGCACTTAGCAACCCCTT-GGGGAATCAGCACTTAGCAACCCCCTTCAC
66 AATGATTAAGGGAATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCCTTCAC
14000643 ATTTAAAATACGGT
131 ATTTAAAATACGGT
*
14000657 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACC
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
*
14000722 AATGGTTAAGGGAATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCCTT
66 AATGATTAAGGGAATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCCTT
14000784 TATATTCAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
143 93 0.77
144 27 0.22
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (144 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
AATGATTAAGGGAATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCCCTTCAC
ATTTAAAATACGGT
Found at i:14000761 original size:27 final size:29
Alignment explanation
Indices: 14000699--14000780 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 29
14000689 AAAATACGGT
14000699 GGAATCAGCACTTAGCAACCACCAATGGTTAAG
1 GGAATCAGCACTTAGCAACC-CCAATGG---AG
*
14000732 GGAATCAGCACTTAGCAACCCC-TTGG-G
1 GGAATCAGCACTTAGCAACCCCAATGGAG
14000759 GGAATCAGCACTTAGCAACCCC
1 GGAATCAGCACTTAGCAACCCC
14000781 CTTTATATTC
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
27 23 0.48
31 3 0.06
32 2 0.04
33 20 0.42
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (29 bp):
GGAATCAGCACTTAGCAACCCCAATGGAG
Found at i:14004136 original size:2 final size:2
Alignment explanation
Indices: 14004131--14004159 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14004121 AAAAAGTAAA
14004131 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14004160 AAAGAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14005476 original size:44 final size:44
Alignment explanation
Indices: 14005428--14005571 Score: 121
Period size: 44 Copynumber: 3.3 Consensus size: 44
14005418 AGACACTAGC
*
14005428 CTTGCCTTCCTGGGTTGCAGCGGAGTAGGTTAAAAATAGTAGAT
1 CTTGCCTTCCTGGGTTGCAGCGGAGTAGGTTAAAAATAGCAGAT
**** * * ** * * * *
14005472 CTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAG-C
1 CTTGCCTTCCTGGGTTG-CAGCGGAGTAGGTTAAAAATAGCAGAT
* *
14005516 CTTGCC-TCTCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTTC-CTGGGTTGCAGCGGAGTAGGTTAAAAATAGCAGAT
14005560 CTTGCCTTCCTG
1 CTTGCCTTCCTG
14005572 CACCGATAGC
Statistics
Matches: 69, Mismatches: 27, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 18 0.26
44 32 0.46
45 19 0.28
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (44 bp):
CTTGCCTTCCTGGGTTGCAGCGGAGTAGGTTAAAAATAGCAGAT
Found at i:14005608 original size:44 final size:44
Alignment explanation
Indices: 14005472--14005791 Score: 148
Period size: 44 Copynumber: 7.3 Consensus size: 44
14005462 AATAGTAGAT
* *
14005472 CTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
**** * * ** * * * *
14005516 CTTGCC-TCTCTGGGTTG-TAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTTC-CTGCACCGATAGCGAAGCAGATCGAAGACACCAG-C
14005560 CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
**** * * ** * * * **
14005604 CTTGCC-TCTCTGGGTTG-TAGCGGAGCAGGTTAAAAATAGCATAT
1 CTTGCCTTC-CTGCACCGATAGCGAAGCAGATCGAAGACACCA-GC
* *
14005648 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAAC
1 CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
* *** * * ** * * * *
14005692 CTTGCCTCCCTAG-GTTG-TAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTTCCT-GCACCGATAGCGAAGCAGATCGAAGACACCAG-C
* *
14005736 CTTGCCTTCCTGCACCGATAGCGAAACAGATCGAAGACATCAGC
1 CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
*
14005780 CTTGCCTCCCTG
1 CTTGCCTTCCTG
14005792 GGTTACAGCG
Statistics
Matches: 184, Mismatches: 80, Indels: 24
0.64 0.28 0.08
Matches are distributed among these distances:
43 54 0.29
44 74 0.40
45 56 0.30
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (44 bp):
CTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
Found at i:14005878 original size:88 final size:88
Alignment explanation
Indices: 14005379--14005857 Score: 733
Period size: 88 Copynumber: 5.4 Consensus size: 88
14005369 GTGAAGATAA
* * *
14005379 CAGATCTTGCCTTCCTGCACCGACAGCAAAGCAGATCGAAGACACTAGCCTTGCCTTCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
14005444 GCAGCGGAGTAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * *
14005467 TAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACCAGCCTTGCCTCTCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
14005532 GTAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* *
14005555 CAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
14005620 GTAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * *
14005643 CATATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
14005708 GTAGCGGAGCAGGTTAAAAATAG
66 GTAGCGGAGCAGGTTAAAAATAG
* * *
14005731 CAGATCTTGCCTTCCTGCACCGATAGCGAAACAGATCGAAGACATCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
** * * * *
14005796 ACAGCGAAACAGGTTTAAAATAA
66 GTAGCGGAGCAGGTTAAAAATAG
* * *
14005819 CAGATCTTGCTTTCCTGCATCGACAACGAAGCAGATCGA
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
14005858 TGACCCCATC
Statistics
Matches: 358, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 358 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GTAGCGGAGCAGGTTAAAAATAG
Found at i:14005959 original size:44 final size:44
Alignment explanation
Indices: 14005870--14005965 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
14005860 ACCCCATCCC
* * * *
14005870 TATCTCCCTAGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCT
1 TATCTCCCTAGACAACAATGGAATAGGTTGAAGATGGGAAGTCT
* * *
14005914 TATCTCCCTGGTCAACAATGGAATAGGTTGAATATGGCGAA-TCT
1 TATCTCCCTAGACAACAATGGAATAGGTTGAAGATGG-GAAGTCT
14005958 TATCTCCC
1 TATCTCCC
14005966 AGAAGTTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
TATCTCCCTAGACAACAATGGAATAGGTTGAAGATGGGAAGTCT
Found at i:14006050 original size:44 final size:44
Alignment explanation
Indices: 14005954--14006632 Score: 268
Period size: 44 Copynumber: 15.6 Consensus size: 44
14005944 AATATGGCGA
* ** ** *
14005954 ATCTTATCTCCCAGAAGTTATAGTGGAGCAGATTAAAGCCA-ATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACA-G
* **
14005998 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
* * * *** *
14006042 ATCTTATCTCTCTGAAGTTGTAG-AGAGCAGA-TCGCAT--CGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
* * **
14006082 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAA--AGC-G
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATCA-CAG
* *
14006126 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGA-CA-ATA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ATCACA-G
** *
14006171 ATCTTATCTCCCTGAAGTCACAGTGGAGCGGATTAAAATCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
** * * * *** *
14006215 ATCTTATCTCTATGAAGTTGTAG-AGAACAGA-TCGCATC-TA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
* * *
14006255 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCACAG
* * * * **
14006300 -CCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGC-G
1 ATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAATCACAG
* * * ** *
14006343 AATCTTATCTCCTTGAAGTTGCAGTAGAGCATATTAAAGCCA-ATA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACA-G
* * **
14006388 ATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAATCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
* * *** *
14006432 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCAT--CGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
* **
14006472 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAA--AGC-G
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATCA-CAG
* * *
14006516 AGTCTTATCTCCCTAAAGTT-CAGTGGAGCAAACTAAAGAAATCA-AG
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-TA-AAATCACAG
* * * * * *
14006562 -TCTTATCCCCCTGAAATTGCAGTGGGGCAGACT-AAATAAACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAT-CACAG
** * *
14006605 ATCCCATCTCCCTAAAGTTGTAGTGGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAG
14006633 TGGATTAGAA
Statistics
Matches: 459, Mismatches: 129, Indels: 94
0.67 0.19 0.14
Matches are distributed among these distances:
40 64 0.14
41 24 0.05
42 12 0.03
43 23 0.05
44 240 0.52
45 90 0.20
46 5 0.01
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAG
Found at i:14006248 original size:173 final size:171
Alignment explanation
Indices: 14005950--14006323 Score: 532
Period size: 173 Copynumber: 2.2 Consensus size: 171
14005940 GTTGAATATG
* * * *
14005950 GCGAATCTTATCTCCCAGAAGTTATAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAG
1 GCGAGTCTTATCT-CCTGAAGTTGTAGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAG
** * * *
14006015 TTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGTAGAGAGCAGATCGCATC
65 TCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTATGAAGTTGTAGAGAACAGATCGCATC
** *
14006080 GGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAA
130 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAA-CCAAGAAA
* *
14006123 GCGAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGACAATAATCTTATCTCCCTGAAG
1 GCGAGTCTTATCTCC-TGAAGTTGTAGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAG
14006188 TCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTATGAAGTTGTAGAGAACAGATCGCATC
65 TCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTATGAAGTTGTAGAGAACAGATCGCATC
* * * *
14006253 TAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAA
130 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACCAAGAAA
* *
14006295 GCAAGCCTTATCCTCCTGAAGTTGTAGTG
1 GCGAGTCTTAT-CTCCTGAAGTTGTAGTG
14006324 AGGCAGACTG
Statistics
Matches: 178, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
172 29 0.16
173 149 0.84
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (171 bp):
GCGAGTCTTATCTCCTGAAGTTGTAGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTGAAGT
CACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTATGAAGTTGTAGAGAACAGATCGCATCG
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACCAAGAAA
Found at i:14006305 original size:84 final size:84
Alignment explanation
Indices: 14005996--14006330 Score: 279
Period size: 84 Copynumber: 3.9 Consensus size: 84
14005986 TTAAAGCCAA
* ** * *
14005996 TAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTT
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTT
14006061 GTAGAGAGCAGATCGCATC
66 GTAGAGAGCAGATCGCATC
*** * * *
14006080 GGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAAGC-GAG-TCTTATCTC-CTTGA
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA--CTA-AAAGCACAGATCTTATCTCTC-TGA
* * * *
14006142 AGTTGCAGTGGAGCAGATTAAAGACA-A
62 AGTTGTAG-AGAGCAGA-T--CG-CATC
** * * * *
14006169 TAATCTTATCTCCCTGAAGTCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTATGAAGTT
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTT
*
14006234 GTAGAGAACAGATCGCATC
66 GTAGAGAGCAGATCGCATC
* *
14006253 TAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AG-CCTTATC-CTCCTGAA
1 TAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCACAGATCTTATCTCT-CTGAA
*
14006315 GTTGTAGTGAGGCAGA
63 GTTGTAGAGA-GCAGA
14006331 CTGAAGATGG
Statistics
Matches: 192, Mismatches: 42, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
83 4 0.02
84 81 0.42
85 25 0.13
86 19 0.10
87 14 0.07
88 19 0.10
89 28 0.15
90 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (84 bp):
TAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCTCTCTGAAGTT
GTAGAGAGCAGATCGCATC
Found at i:14006315 original size:217 final size:218
Alignment explanation
Indices: 14006084--14006622 Score: 674
Period size: 217 Copynumber: 2.5 Consensus size: 218
14006074 CGCATCGGGT
**
14006084 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAAGCGAGTCTTATCTCCTTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGAAAGCGAGTCTTATCTCCTTGAAGTTGCA
* *
14006149 GTGGAGCAGATTAAAGACAATAATCTTATCTCCCTGAAGTCACAGTGGAGCGGATTAAAATCACA
66 GTGGAGCAGATTAAAGACAATAATCCTATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCACA
* *
14006214 GATCTTATCTCTATGAAGTTGTAGAGAACAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAGT
131 GATCTTATCTCTATGAAGTTGCAGAGAACAGATCGCATCGAATCTTATCTCCCTAAAGTTGCAGT
* *
14006279 GGAGCAGA-CTAAGTAAGCAAGC
196 GGAGCAGACCCAAGAAAGCAAGC
* * * ** *
14006301 CTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGCGAATCTTATCTCCTTGAAGTTG
1 CTTATCTC-CCTGAAGTTGCAGTGGA-GCAAACTAAAGAAAGCGAGTCTTATCTCCTTGAAGTTG
* * * ** *
14006364 CAGTAGAGCATATTAAAGCCAATAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAATCA
64 CAGTGGAGCAGATTAAAGACAATAATCCTATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCA
* * ** *
14006429 CAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCGGGTCTTATCTCCCTGAAGTTGCA
129 CAGATCTTATCTCTATGAAGTTGCAGAGAACAGATCGCATCGAATCTTATCTCCCTAAAGTTGCA
* *
14006494 GTGGAGCAGACCCAAGAAAGCGAGT
194 GTGGAGCAGACCCAAGAAAGCAAGC
* * * * * *
14006519 CTTATCTCCCTAAAGTT-CAGTGGAGCAAACTAAAGAAATCAAGTCTTATCCCCCTGAAATTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGAAAGCGAGTCTTATCTCCTTGAAGTTGCA
* * * * *
14006583 GTGGGGCAGACTAAATA-AACAAATCCCATCTCCCTAAAGT
66 GTGGAGCAGATTAAAGACAA-TAATCCTATCTCCCTAAAGT
14006623 TGTAGTGGAG
Statistics
Matches: 270, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
216 5 0.02
217 238 0.88
218 26 0.10
219 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (218 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGAAAGCGAGTCTTATCTCCTTGAAGTTGCA
GTGGAGCAGATTAAAGACAATAATCCTATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCACA
GATCTTATCTCTATGAAGTTGCAGAGAACAGATCGCATCGAATCTTATCTCCCTAAAGTTGCAGT
GGAGCAGACCCAAGAAAGCAAGC
Found at i:14007082 original size:19 final size:19
Alignment explanation
Indices: 14007058--14007130 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
14007048 AATCTTCAAG
14007058 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14007077 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14007096 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14007115 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14007131 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14007156 original size:22 final size:22
Alignment explanation
Indices: 14007090--14007153 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 22
14007080 ATGTAATCTT
*
14007090 AGATATGATATGCAATCTT---
1 AGATATGATATGCAATATTAGA
*
14007109 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
14007131 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
14007154 GATTTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 19 0.50
22 8 0.21
23 11 0.29
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:14014018 original size:32 final size:32
Alignment explanation
Indices: 14013977--14014050 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
14013967 CAGCTGCTTT
* * *
14013977 TGTTCACACCTAATGGACCGTCCAACTCC-TGA
1 TGTTCACACCCAAGGGACCATCCAACTCCAT-A
*
14014009 TGTTCACACCCAAGGGACCATCCAAGTCCATA
1 TGTTCACACCCAAGGGACCATCCAACTCCATA
14014041 TGTTCACACC
1 TGTTCACACC
14014051 AATTACTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 36 0.97
33 1 0.03
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (32 bp):
TGTTCACACCCAAGGGACCATCCAACTCCATA
Found at i:14014493 original size:29 final size:29
Alignment explanation
Indices: 14014448--14014505 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14014438 TTCAACCTAT
*
14014448 ACCGACTGGTTCTTATCTCTAATAGATAG
1 ACCGACTGGTTCCTATCTCTAATAGATAG
14014477 ACCGACTGGTTCCTATCTCTAATAGATAG
1 ACCGACTGGTTCCTATCTCTAATAGATAG
14014506 TGGGTCACGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (29 bp):
ACCGACTGGTTCCTATCTCTAATAGATAG
Found at i:14031581 original size:14 final size:14
Alignment explanation
Indices: 14031562--14031592 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14031552 TTCTCGTAGA
14031562 TTCGATTGACAAGT
1 TTCGATTGACAAGT
*
14031576 TTCGATTGACACGT
1 TTCGATTGACAAGT
14031590 TTC
1 TTC
14031593 CTATAATACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (14 bp):
TTCGATTGACAAGT
Found at i:14032258 original size:32 final size:32
Alignment explanation
Indices: 14032221--14032294 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
14032211 ATTCATCCAA
*
14032221 ATTTTCAATTGAACACTTATATATATGCATTT
1 ATTTTCAATTGAACACCTATATATATGCATTT
14032253 ATTTTCAATTGAACACCTATATATATGCATTT
1 ATTTTCAATTGAACACCTATATATATGCATTT
* *
14032285 AGTTACAATT
1 ATTTTCAATT
14032295 TAATATCTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.45
Consensus pattern (32 bp):
ATTTTCAATTGAACACCTATATATATGCATTT
Found at i:14037687 original size:25 final size:24
Alignment explanation
Indices: 14037659--14037706 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
14037649 ATCTGGGCAA
*
14037659 TATAATGGGAAGCTCACAAAGAGCC
1 TATAACGGGAAGCTC-CAAAGAGCC
*
14037684 TATAACGGGTAGCTCCAAAGAGC
1 TATAACGGGAAGCTCCAAAGAGC
14037707 AATTAATGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (24 bp):
TATAACGGGAAGCTCCAAAGAGCC
Found at i:14037717 original size:24 final size:26
Alignment explanation
Indices: 14037655--14037721 Score: 86
Period size: 24 Copynumber: 2.7 Consensus size: 26
14037645 GCTTATCTGG
*
14037655 GCAATATAATGGGAAGCTCACAAAGA
1 GCAATATAATGGGTAGCTCACAAAGA
* *
14037681 GC-CTATAACGGGTAGCTC-CAAAGA
1 GCAATATAATGGGTAGCTCACAAAGA
14037705 GCAAT-TAATGGGTAGCT
1 GCAATATAATGGGTAGCT
14037722 TTGAAGAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 19 0.54
25 14 0.40
26 2 0.06
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.19
Consensus pattern (26 bp):
GCAATATAATGGGTAGCTCACAAAGA
Found at i:14045358 original size:21 final size:21
Alignment explanation
Indices: 14045332--14045373 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14045322 TTTGCCTAAG
* *
14045332 ATGTAACTTGGATTGAATTGA
1 ATGTAAATTGGATTAAATTGA
*
14045353 ATGTAAATTGTATTAAATTGA
1 ATGTAAATTGGATTAAATTGA
14045374 TGTTATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
ATGTAAATTGGATTAAATTGA
Found at i:14049240 original size:16 final size:17
Alignment explanation
Indices: 14049214--14049248 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14049204 TTAATTTAAA
*
14049214 AGGTAAATTTGGTAATT
1 AGGTAAATTTGGAAATT
14049231 AGGT-AATTTGGAAATT
1 AGGTAAATTTGGAAATT
14049247 AG
1 AG
14049249 AAAAAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (17 bp):
AGGTAAATTTGGAAATT
Found at i:14052241 original size:21 final size:21
Alignment explanation
Indices: 14052200--14052403 Score: 139
Period size: 21 Copynumber: 9.7 Consensus size: 21
14052190 CTCATGTTTT
*
14052200 GCTTTTCGTTTAGCTCTTATGA
1 GCTTTT-GTTTAACTCTTATGA
*
14052222 GCTTTTGTTTAACTCATATGA
1 GCTTTTGTTTAACTCTTATGA
*
14052243 G-TTTTCGTTTAGCTCTT-TCGA
1 GCTTTT-GTTTAACTCTTAT-GA
* *
14052264 GCTTCTGTTCAACTCTTATGA
1 GCTTTTGTTTAACTCTTATGA
* *
14052285 G-TTTCTGTTCAGCTCTTATGA
1 GCTTT-TGTTTAACTCTTATGA
*
14052306 GCTTTTGTTTAACTCATATGA
1 GCTTTTGTTTAACTCTTATGA
* * *
14052327 G-TTTTCGTTCAGCTCTTACGA
1 GCTTTT-GTTTAACTCTTATGA
* * * *
14052348 GCTTCTATTCAACCCTTATG-
1 GCTTTTGTTTAACTCTTATGA
* * *
14052368 GCTTTCTATTTAGCTCTCATGA
1 GCTTT-TGTTTAACTCTTATGA
* *
14052390 GCTTCTGTTCAACT
1 GCTTTTGTTTAACT
14052404 TTCGATATGC
Statistics
Matches: 142, Mismatches: 30, Indels: 21
0.74 0.16 0.11
Matches are distributed among these distances:
20 15 0.11
21 107 0.75
22 20 0.14
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (21 bp):
GCTTTTGTTTAACTCTTATGA
Found at i:14052251 original size:42 final size:42
Alignment explanation
Indices: 14052202--14052351 Score: 214
Period size: 42 Copynumber: 3.6 Consensus size: 42
14052192 CATGTTTTGC
*
14052202 TTTTCGTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
1 TTTTCGTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
* * * *
14052244 TTTTCGTTTAGCTCTT-TCGAGCTTCTGTTCAACTCTTATGAG
1 TTTTCGTTCAGCTCTTAT-GAGCTTTTGTTTAACTCATATGAG
14052286 -TTTCTGTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
1 TTTTC-GTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
*
14052328 TTTTCGTTCAGCTCTTACGAGCTT
1 TTTTCGTTCAGCTCTTATGAGCTT
14052352 CTATTCAACC
Statistics
Matches: 96, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
41 5 0.05
42 86 0.90
43 5 0.05
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.48
Consensus pattern (42 bp):
TTTTCGTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
Found at i:14052352 original size:84 final size:84
Alignment explanation
Indices: 14052203--14052403 Score: 298
Period size: 84 Copynumber: 2.4 Consensus size: 84
14052193 ATGTTTTGCT
* *
14052203 TTTC-GTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTTCGTTTAGCTCTTTCGAGCT
1 TTTCTGTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACGAGCT
* *
14052267 TCTGTTCAACTCTTATGAG-
66 TCTATTCAACCCTTATG-GC
*
14052286 TTTCTGTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACGAGCT
1 TTTCTGTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACGAGCT
14052351 TCTATTCAACCCTTATGGC
66 TCTATTCAACCCTTATGGC
* * * *
14052370 TTTCTATTTAGCTCTCATGAGCTTCTGTTCAACT
1 TTTCTGTTTAGCTCTTATGAGCTTTTGTTTAACT
14052404 TTCGATATGC
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
83 5 0.05
84 101 0.95
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.46
Consensus pattern (84 bp):
TTTCTGTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTTCGTTCAGCTCTTACGAGCT
TCTATTCAACCCTTATGGC
Found at i:14052383 original size:42 final size:42
Alignment explanation
Indices: 14052203--14052403 Score: 194
Period size: 42 Copynumber: 4.8 Consensus size: 42
14052193 ATGTTTTGCT
* * * * *
14052203 TTTC-GTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* *
14052244 TTT-TCGTTTAGCTCTTTCGAGCTTCTGTTCAACTCTTATGAG
1 TTTCT-GTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* * * *
14052286 TTTCTGTTCAGCTCTTATGAGCTTTTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* *
14052328 TTT-TCGTTCAGCTCTTACGAGCTTCTATTCAACCCTTATG-G
1 TTTCT-GTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* * * *
14052369 CTTTCTATTTAGCTCTCATGAGCTTCTGTTCAACT
1 -TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACT
14052404 TTCGATATGC
Statistics
Matches: 131, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
41 5 0.04
42 124 0.95
43 2 0.02
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
Found at i:14058429 original size:138 final size:138
Alignment explanation
Indices: 14058180--14058453 Score: 318
Period size: 138 Copynumber: 2.0 Consensus size: 138
14058170 GAGCTATAAA
* * *
14058180 TGGGTCTGCTCATACAAGCTGTCACTCAGAATGTAAGCTACATGATGCTGCTCAAACAAGATGTC
1 TGGGTCTGCTCACACAAGCTGTCACTCAGAACGTAAGCTACACGATGCTGCTCAAACAAGATGTC
* * * * * * *
14058245 AAGTATCCTCAACTAATGCCAGATCTTAGCCATCGGTAGGAAATTCAAGACCAGCACCCGAAACA
66 AAGTAACCGCAACTAATGCCAGAACTCAACCACCGGTAGGAAATTCAAGACCAGCACCCAAAACA
*
14058310 TGGTAACT
131 CGGTAACT
* * * * * *
14058318 TGGGTCTGCTCACACAAGCTGTCAGTCGGAACGT-AGCTACACGGTGTTGCTCACACAAGTTGTC
1 TGGGTCTGCTCACACAAGCTGTCACTCAGAACGTAAGCTACACGATGCTGCTCAAACAAGATGTC
** * * *
14058382 AAGTAACCGCAAC-ACATGCTGGAAACTCAACCACCGGTAGGACATTCAGGACTAGCACCCAAAA
66 AAGTAACCGCAACTA-ATGCCAG-AACTCAACCACCGGTAGGAAATTCAAGACCAGCACCCAAAA
14058446 CACGGTAA
129 CACGGTAA
14058454 TCGTAATGAC
Statistics
Matches: 112, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
136 1 0.01
137 41 0.37
138 70 0.62
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (138 bp):
TGGGTCTGCTCACACAAGCTGTCACTCAGAACGTAAGCTACACGATGCTGCTCAAACAAGATGTC
AAGTAACCGCAACTAATGCCAGAACTCAACCACCGGTAGGAAATTCAAGACCAGCACCCAAAACA
CGGTAACT
Found at i:14059951 original size:25 final size:27
Alignment explanation
Indices: 14059907--14059958 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14059897 TAGAACATAC
14059907 AGAAAAGAAAAGAAACAACAA-AAAAT
1 AGAAAAGAAAAGAAACAACAATAAAAT
14059933 AGAAAA-AAAAGATAA-AACAATAAAAT
1 AGAAAAGAAAAGA-AACAACAATAAAAT
14059959 GTTATAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.77, C:0.06, G:0.10, T:0.08
Consensus pattern (27 bp):
AGAAAAGAAAAGAAACAACAATAAAAT
Found at i:14060126 original size:15 final size:15
Alignment explanation
Indices: 14060106--14060135 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14060096 ACATTTATCG
*
14060106 AAATAGATGAATTAC
1 AAATAGACGAATTAC
14060121 AAATAGACGAATTAC
1 AAATAGACGAATTAC
14060136 TTACAACATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.23
Consensus pattern (15 bp):
AAATAGACGAATTAC
Found at i:14062852 original size:6 final size:6
Alignment explanation
Indices: 14062841--14062869 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14062831 TCGTCAAAAA
14062841 CTGAAC CTGAAC CTGAAC CTGAAC CTGAA
1 CTGAAC CTGAAC CTGAAC CTGAAC CTGAA
14062870 GAAAATGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.17
Consensus pattern (6 bp):
CTGAAC
Found at i:14064805 original size:22 final size:23
Alignment explanation
Indices: 14064757--14064805 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
14064747 GCATAAAATT
*
14064757 TTGCTAGTAAAAATGCAGACAAG
1 TTGCTAGTAAAAATGCAGACAAA
*
14064780 TTGCTAGTAAAAATGC-GATAAA
1 TTGCTAGTAAAAATGCAGACAAA
14064802 TTGC
1 TTGC
14064806 CATTCCCCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (23 bp):
TTGCTAGTAAAAATGCAGACAAA
Found at i:14068343 original size:27 final size:27
Alignment explanation
Indices: 14068304--14068441 Score: 206
Period size: 27 Copynumber: 5.1 Consensus size: 27
14068294 AGAATCCCGA
14068304 AATA-CCCTCATAGGGTAAAATGACCGT
1 AATACCCCT-ATAGGGTAAAATGACCGT
14068331 AATACCCCTATAGGGTAAAATGACCGT
1 AATACCCCTATAGGGTAAAATGACCGT
* *
14068358 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTATAGGGTAAAATGACCGT
* *
14068385 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTATAGGGTAAAATGACCGT
* *
14068412 AATACCCCTATAGGGTAAAATAACTGT
1 AATACCCCTATAGGGTAAAATGACCGT
14068439 AAT
1 AAT
14068442 GCTCTGGTGG
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 100 0.96
28 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGT
Found at i:14068399 original size:54 final size:54
Alignment explanation
Indices: 14068278--14068443 Score: 210
Period size: 54 Copynumber: 3.1 Consensus size: 54
14068268 TCTGGACTGA
* * * * *
14068278 AATGCCCCCATAAGGTAGAAT-CCCGAAATA-CCCTCATAGGGTAAAATGACCGT
1 AATGCCCCTATAGGGTAAAATGACCGTAATACCCCT-ATAGGGTAAAATGACCGT
* * *
14068331 AATACCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGT
1 AATGCCCCTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGT
* * *
14068385 AATGCCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACTGT
1 AATGCCCCTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGT
14068439 AATGC
1 AATGC
14068444 TCTGGTGGGT
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 17 0.18
54 76 0.78
55 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (54 bp):
AATGCCCCTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCGT
Found at i:14068539 original size:33 final size:33
Alignment explanation
Indices: 14068502--14068568 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
14068492 TTGTCTATAG
14068502 TTAAATGATTGATTTGTCTGTGTTTGGTATGAC
1 TTAAATGATTGATTTGTCTGTGTTTGGTATGAC
14068535 TTAAATGATTGATTTGTCTGTGTTTGGTATGAC
1 TTAAATGATTGATTTGTCTGTGTTTGGTATGAC
14068568 T
1 T
14068569 GATTTGTCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.49
Consensus pattern (33 bp):
TTAAATGATTGATTTGTCTGTGTTTGGTATGAC
Found at i:14068566 original size:24 final size:25
Alignment explanation
Indices: 14068539--14068596 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
14068529 TATGACTTAA
*
14068539 ATGATTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTCTGTGATTTGGT
*
14068563 ATGACTGATTTGTCTGTGATTT-GA
1 ATGACTGATTTGTCTGTGATTTGGT
14068587 ATGACTGATT
1 ATGACTGATT
14068597 CTGAGCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 28 0.90
25 3 0.10
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.48
Consensus pattern (25 bp):
ATGACTGATTTGTCTGTGATTTGGT
Found at i:14068698 original size:27 final size:27
Alignment explanation
Indices: 14068660--14068724 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
14068650 ATGGAGGAAG
14068660 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
14068685 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
14068713 TACTATTACTGG
1 TACTGTTACTGG
14068725 CAGCTTTGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 27 0.77
28 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:14068730 original size:27 final size:26
Alignment explanation
Indices: 14068678--14068756 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 26
14068668 TGGTGGCTCT
**
14068678 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAAT-ACTGTTACTGGCAGCTTG
* *
14068705 GCCACATATACTATTACTGGCAGCTTT
1 GCCACA-ATACTGTTACTGGCAGCTTG
** *
14068732 GCTGCAATACTGTTGCTGGCAGCTT
1 GCCACAATACTGTTACTGGCAGCTT
14068757 TGCTACGATG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
26 17 0.40
27 24 0.56
28 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (26 bp):
GCCACAATACTGTTACTGGCAGCTTG
Found at i:14068809 original size:32 final size:32
Alignment explanation
Indices: 14068768--14069034 Score: 218
Period size: 32 Copynumber: 8.4 Consensus size: 32
14068758 GCTACGATGC
* * *
14068768 TACTGATGGCTTTGTGTCGGTCATAGT-ACCGT
1 TACTGATGGCTTTGTGCCGATCATA-TCACTGT
* *
14068800 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * * *
14068832 TA-TCGATGTCTGTGTGCCAATCATTTCACTGT
1 TACT-GATGGCTTTGTGCCGATCATATCACTGT
* * *
14068864 TACTGATGG-TTGTGTACCGGTCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATCACTGT
* * * * *
14068896 TACTGATGGCTTTGTACCAATCATGTTACCGT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * * *
14068928 TACTAATGGCTGTGTGTCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * *
14068960 TACTGATGGCTGTGTGCCGGTCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * * *
14068992 TACTGATAGCTTTGTGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
*
14069023 TACTTATGGCTT
1 TACTGATGGCTT
14069035 GTAGCCATTC
Statistics
Matches: 189, Mismatches: 41, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
31 13 0.07
32 173 0.92
33 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATCACTGT
Found at i:14068941 original size:96 final size:96
Alignment explanation
Indices: 14068765--14069020 Score: 318
Period size: 96 Copynumber: 2.7 Consensus size: 96
14068755 TTTGCTACGA
* ** * * *
14068765 TGCTACTGATGGCTTTGTGTCGGTCATAGT-ACCGTTACTGATGGCTTTGTGCCGATCATATTAC
1 TGCTACTGATGGCTGTGTACCGGTCATA-TCACTGCTACTGATGGCTTTGTGCCAATCATATTAC
* * *
14068829 CGTTATCGATGTCTGTGTGCCAATCATTTCAC
65 CGTTATCAATGGCTGTGTGCCAATCATATCAC
* * * *
14068861 TGTTACTGATGGTTGTGTACCGGTCATATCACTGCTACTGATGGCTTTGTACCAATCATGTTACC
1 TGCTACTGATGGCTGTGTACCGGTCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTACC
* *
14068926 GTTA-CTAATGGCTGTGTGTCGATCATATCAC
66 GTTATC-AATGGCTGTGTGCCAATCATATCAC
* * *
14068957 TGCTACTGATGGCTGTGTGCCGGTCATATCACTGCTACTGATAGCTTTGTGCCAATCACATTAC
1 TGCTACTGATGGCTGTGTACCGGTCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTAC
14069021 TGTACTTATG
Statistics
Matches: 136, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 2 0.01
96 134 0.99
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (96 bp):
TGCTACTGATGGCTGTGTACCGGTCATATCACTGCTACTGATGGCTTTGTGCCAATCATATTACC
GTTATCAATGGCTGTGTGCCAATCATATCAC
Found at i:14069269 original size:28 final size:28
Alignment explanation
Indices: 14069227--14069285 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
14069217 CATACTTGCA
*
14069227 CCATACTGATACTGTATCAGGCTTAGGC
1 CCATACTGATACTGTATCAGGCTAAGGC
* * *
14069255 CCATACTGTTTCTGTATTAGGCTAAGGC
1 CCATACTGATACTGTATCAGGCTAAGGC
14069283 CCA
1 CCA
14069286 CACTTTACTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (28 bp):
CCATACTGATACTGTATCAGGCTAAGGC
Found at i:14075639 original size:20 final size:20
Alignment explanation
Indices: 14075616--14075656 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14075606 ATCCTTTACA
14075616 TCATTACATAATTGAAACTT
1 TCATTACATAATTGAAACTT
14075636 TCATTACATAATTGAAACTT
1 TCATTACATAATTGAAACTT
14075656 T
1 T
14075657 TCAGAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TCATTACATAATTGAAACTT
Found at i:14093108 original size:44 final size:44
Alignment explanation
Indices: 14093053--14093572 Score: 671
Period size: 44 Copynumber: 12.0 Consensus size: 44
14093043 GAAACTATAA
* *** *
14093053 GTCCTATCTCCCTGAACAATTGTGGAATAGGTGAAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* * *
14093097 GTCCTAGCTCCCTAAATAGCAGTGGAATAGGTGGAAGATTGCAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
*
14093141 GTCCTAGCTCCCTGAACAGTAGTGGAATAGGTGGAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* * * * *
14093185 GTCCTAACTCCCTGAACAGCAGTGGAATA-GTGGAAAACTATAA
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* *
14093228 GTCCTATCT-CC---A-A-CAGTGGAATAGGTAGAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* *
14093266 GTCCTAGCTCCCTGAACAGCAGTCGAATAGGTGGAAGATTGCAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
14093310 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
14093354 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* *
14093398 GTCCTAGCTCCTTGAACAGTAGTGGAATAGGTGGAAGATTGTAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* ** * *
14093442 GTCCTAGCTCCCAGAATTGCAGTGAAATAGGTGGAAGATTGCAT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* *
14093486 GTCCTAGCTCCCTGAACAGCGGTGGAATAGGTGGAAAATTGTA-
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
* * * * *
14093529 GAT-CTTGTCACCCTGAACAACAATGGAATAGGAGGAAGATTGTA
1 G-TCCTAG-CTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTA
14093573 GATCCTGTCA
Statistics
Matches: 414, Mismatches: 53, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
37 10 0.02
38 18 0.04
39 3 0.01
42 3 0.01
43 23 0.06
44 357 0.86
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (44 bp):
GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAT
Found at i:14097665 original size:39 final size:39
Alignment explanation
Indices: 14097621--14097742 Score: 217
Period size: 39 Copynumber: 3.1 Consensus size: 39
14097611 TTTTAAAATC
14097621 ACATTTGACTCATAAATATTAAATAATATTTACGAACTT
1 ACATTTGACTCATAAATATTAAATAATATTTACGAACTT
14097660 ACATTTGACTCATAAATATTAAATAATATTTACGAACTT
1 ACATTTGACTCATAAATATTAAATAATATTTACGAACTT
14097699 ACATTTGACTCATAAATATTAAATAATAATATTTACGAACTT
1 ACATTTGACTCATAAATATT--A-AATAATATTTACGAACTT
14097741 AC
1 AC
14097743 TCGTTAGATT
Statistics
Matches: 80, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
39 59 0.74
41 1 0.01
42 20 0.25
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (39 bp):
ACATTTGACTCATAAATATTAAATAATATTTACGAACTT
Found at i:14099885 original size:27 final size:27
Alignment explanation
Indices: 14099867--14100146 Score: 366
Period size: 27 Copynumber: 10.4 Consensus size: 27
14099857 GGTATAATAG
14099867 TCATTTTACCCTATGGGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
14099893 GTCATTTTACCCTATGAGGGTATTTTGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
* ** *
14099921 TCATTTTACCTTATTAGGGTATTTTGA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
14099948 TCATTTTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
14099975 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
14100002 TCATTTTAACCTATGAGGGTACTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
14100029 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
*
14100056 TCATTTTACCCTATTAGGGGTATTTCGA
1 TCATTTTACCCTA-TGGGGGTATTTCGA
* * *
14100084 TCATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA
*
14100111 T-ATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
14100137 TCATTTTACC
1 TCATTTTACC
14100147 TTATTTTGGG
Statistics
Matches: 221, Mismatches: 29, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
26 24 0.11
27 173 0.78
28 24 0.11
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:14102386 original size:18 final size:19
Alignment explanation
Indices: 14102363--14102398 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
14102353 TGTGTGACCC
14102363 TGGTTTCCC-AAATTTTCA
1 TGGTTTCCCAAAATTTTCA
14102381 TGGTTTCCCAAAATTTTC
1 TGGTTTCCCAAAATTTTC
14102399 TATTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (19 bp):
TGGTTTCCCAAAATTTTCA
Found at i:14103967 original size:20 final size:20
Alignment explanation
Indices: 14103939--14104059 Score: 77
Period size: 20 Copynumber: 6.0 Consensus size: 20
14103929 CCAGTGCCTC
* *
14103939 GATTACACTTTCATGCCGCT
1 GATTGCACTTTCATGCCCCT
** *
14103959 GATTGCACTTTGGTGCCCTT
1 GATTGCACTTTCATGCCCCT
** *
14103979 GATCACAC-TCCGATGCCCCT
1 GATTGCACTTTC-ATGCCCCT
**
14103999 GATTGCACTTTTC-TGCCTGT
1 GATTGCAC-TTTCATGCCCCT
**
14104019 GATTGCACTTTTGTGCCCCT
1 GATTGCACTTTCATGCCCCT
*
14104039 GATTGCACATTT-GTGCCCCT
1 GATTGCAC-TTTCATGCCCCT
14104059 G
1 G
14104060 GTTTGGATTC
Statistics
Matches: 77, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
19 4 0.05
20 68 0.88
21 3 0.04
22 2 0.03
ACGTcount: A:0.14, C:0.31, G:0.20, T:0.36
Consensus pattern (20 bp):
GATTGCACTTTCATGCCCCT
Found at i:14105473 original size:20 final size:19
Alignment explanation
Indices: 14105419--14105474 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 19
14105409 GCCGTGTGGT
14105419 CTTATGTCGCCAATTTTTG
1 CTTATGTCGCCAATTTTTG
* *
14105438 --TACTGT-GTCTATTTTTG
1 CTTA-TGTCGCCAATTTTTG
14105455 ACTTATGTCGCCAATTTTTG
1 -CTTATGTCGCCAATTTTTG
14105475 TACTCTGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 9
0.68 0.10 0.22
Matches are distributed among these distances:
17 11 0.39
18 3 0.11
19 3 0.11
20 11 0.39
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.50
Consensus pattern (19 bp):
CTTATGTCGCCAATTTTTG
Found at i:14114944 original size:8 final size:9
Alignment explanation
Indices: 14114917--14114954 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
14114907 TGACTCACTG
14114917 TTTCAAAAC
1 TTTCAAAAC
14114926 TTTCAAAAC
1 TTTCAAAAC
14114935 TTTC-AAAC
1 TTTCAAAAC
14114943 TTTCAAAAC
1 TTTCAAAAC
14114952 TTT
1 TTT
14114955 GCAATTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (9 bp):
TTTCAAAAC
Found at i:14114944 original size:17 final size:18
Alignment explanation
Indices: 14114917--14114954 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
14114907 TGACTCACTG
14114917 TTTCAAAACTTTCAAAAC
1 TTTCAAAACTTTCAAAAC
14114935 TTTC-AAACTTTCAAAAC
1 TTTCAAAACTTTCAAAAC
14114952 TTT
1 TTT
14114955 GCAATTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (18 bp):
TTTCAAAACTTTCAAAAC
Found at i:14128117 original size:79 final size:81
Alignment explanation
Indices: 14127981--14128165 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
14127971 TTGAATGATG
*
14127981 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14128045 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
14128060 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
14128122 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
14128140 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14128166 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:14128179 original size:40 final size:40
Alignment explanation
Indices: 14127982--14128165 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
14127972 TGAATGATGT
* * * *
14127982 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
14128022 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
14128062 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14128100 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
14128141 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14128166 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:14128187 original size:79 final size:79
Alignment explanation
Indices: 14127982--14128198 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
14127972 TGAATGATGT
** * * * **
14127982 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
14128045 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
14128062 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
14128127 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
14128141 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
14128199 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:14141314 original size:21 final size:22
Alignment explanation
Indices: 14141284--14141335 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
14141274 AGATGGTATT
* *
14141284 CTTAACTAAGGGTGATAAG-TA
1 CTTAATTAAGGGTAATAAGTTA
*
14141305 CTTAATTAAGGGTAATTAGTTA
1 CTTAATTAAGGGTAATAAGTTA
*
14141327 CTTAGTTAA
1 CTTAATTAA
14141336 TAATCAAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.37
Consensus pattern (22 bp):
CTTAATTAAGGGTAATAAGTTA
Found at i:14145314 original size:27 final size:26
Alignment explanation
Indices: 14145294--14145608 Score: 296
Period size: 27 Copynumber: 11.6 Consensus size: 26
14145284 GGGTATAACA
14145294 GTCATTTTACCCTATGAGGGTATTTC
1 GTCATTTTACCCTATGAGGGTATTTC
* * *
14145320 GATCATTTTATCCTAATGGGGGTATTTTG
1 G-TCATTTTACCCT-ATGAGGGTA-TTTC
*
14145349 GTCATTTTACCCTATGGGGGTATTTC
1 GTCATTTTACCCTATGAGGGTATTTC
*
14145375 GATCATTTTATCCTATG-GGAGTATTTC
1 G-TCATTTTACCCTATGAGG-GTATTTC
14145402 GATCATTTTACCCTATGAGGGTATTTC
1 G-TCATTTTACCCTATGAGGGTATTTC
*
14145429 GGTTATTTTACCCTATTTG-GGGTATTTC
1 -GTCATTTTACCCTA--TGAGGGTATTTC
* *
14145457 AATCATTTTACCCTAT-AGGGGTATTTTG
1 -GTCATTTTACCCTATGA-GGGTA-TTTC
* * *
14145485 GTCATTTTACTCTATTAGGGGTATTGC
1 GTCATTTTACCCTATGA-GGGTATTTC
* * *
14145512 GATCATTTTACCTTATGGGGGTATTTTG
1 G-TCATTTTACCCTATGAGGGTA-TTTC
*
14145540 GTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTA-TTTC
*
14145567 GTCTTTTTACCCTATCG-GGGTATTTC
1 GTCATTTTACCCTAT-GAGGGTATTTC
14145593 GATCATTTTACCCTAT
1 G-TCATTTTACCCTAT
14145609 TTTAGGGTCT
Statistics
Matches: 245, Mismatches: 27, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
26 12 0.05
27 158 0.64
28 69 0.28
29 6 0.02
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATGAGGGTATTTC
Found at i:14145344 original size:55 final size:54
Alignment explanation
Indices: 14145294--14145607 Score: 330
Period size: 55 Copynumber: 5.8 Consensus size: 54
14145284 GGGTATAACA
* *
14145294 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTATCCTAATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAATGGGGGTA-TTTC
* * *
14145349 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTATCCT-ATGGGAGTATTTC
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAATGGGGGTATTTC
* * * *
14145402 GATCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATTTGGGGTATTTC
1 G-TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAATGGGGGTATTTC
* * * * * * *
14145457 AATCATTTTACCCTAT-AGGGGTATTTTGGTCATTTTACTCTATTAGGGGTATTGC
1 -GTCATTTTACCCTATGA-GGGTATTTCGATCATTTTACCCTAATGGGGGTATTTC
* * * * * *
14145512 GATCATTTTACCTTATGGGGGTATTTTGGTCATTTTACCCT-ATGAGGGTATTTTG
1 G-TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAATGGGGGTA-TTTC
*
14145567 GTCTTTTTACCCTATCG-GGGTATTTCGATCATTTTACCCTA
1 GTCATTTTACCCTAT-GAGGGTATTTCGATCATTTTACCCTA
14145608 TTTTAGGGTC
Statistics
Matches: 221, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
53 4 0.02
54 83 0.38
55 134 0.61
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAATGGGGGTATTTC
Done.