Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 49 of 141
Found at i:14755098 original size:19 final size:19
Alignment explanation
Indices: 14755074--14755261 Score: 117
Period size: 19 Copynumber: 9.7 Consensus size: 19
14755064 ATATCCCGAC
14755074 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
14755093 ATTACAA-AAT--TACAATA
1 ATTACAATATTCATACAA-A
* * *
14755110 TTCATACAAAATT-AT--AAT
1 AT--TACAATATTCATACAAA
14755128 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
14755147 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
14755168 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* * *
14755187 A-TACTA-ATCCAAAACTATAA
1 ATTACAATATTC-ATAC-A-AA
*
14755207 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
14755229 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
14755248 ATTACAATATTCAT
1 ATTACAATATTCAT
14755262 TGGCGCCTCT
Statistics
Matches: 133, Mismatches: 15, Indels: 42
0.70 0.08 0.22
Matches are distributed among these distances:
16 13 0.10
17 7 0.05
18 10 0.08
19 55 0.41
20 14 0.11
21 22 0.17
22 5 0.04
23 5 0.04
25 2 0.02
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:14755145 original size:46 final size:40
Alignment explanation
Indices: 14755095--14755188 Score: 134
Period size: 46 Copynumber: 2.2 Consensus size: 40
14755085 CATACAAAAT
14755095 TACAAAATTACAATATTCATACAAAATTATAATATTACAATATTCA
1 TACAAAATTACAATATTCATAC--AA--A-AA-ATTACAATATTCA
14755141 TACAAAATTACAATATTCATACAAAAAATTACAATATTCA
1 TACAAAATTACAATATTCATACAAAAAATTACAATATTCA
14755181 TACAAAAT
1 TACAAAAT
14755189 ACTAATCCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
40 21 0.44
41 2 0.04
42 1 0.02
44 2 0.04
46 22 0.46
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (40 bp):
TACAAAATTACAATATTCATACAAAAAATTACAATATTCA
Found at i:14755155 original size:27 final size:27
Alignment explanation
Indices: 14755074--14755178 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 27
14755064 ATATCCCGAC
*
14755074 ATTACAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTACAAT
*
14755101 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
14755128 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
14755155 ATT-C-ATA--CA-A-AAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
14755176 ATT
1 ATT
14755179 CATACAAAAT
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
21 14 0.19
22 1 0.01
23 2 0.03
25 3 0.04
26 1 0.01
27 54 0.72
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:14755211 original size:67 final size:60
Alignment explanation
Indices: 14755098--14755249 Score: 153
Period size: 67 Copynumber: 2.4 Consensus size: 60
14755088 ACAAAATTAC
** * **
14755098 AAAATTACAATATTCATACAAAATTATAATATTACAATATTCATACAAAATTACAATATTCATAC
1 AAAATTACAATATTCATACAAAA-TATAATACCAAAATATAAATAC-AAATT--AA-ATT-ATA-
14755163 AA
59 AA
*
14755165 AAAATTACAATATTCATACAAAATACTAAT-CCAAAACTATAAATACAAATTTAATTATAAA
1 AAAATTACAATATTCATACAAAATA-TAATACCAAAA-TATAAATACAAATTAAATTATAAA
*
14755226 ATAATTACAATATTCATACAAAAT
1 AAAATTACAATATTCATACAAAAT
14755250 TACAATATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
61 25 0.33
62 3 0.04
63 3 0.04
64 1 0.01
66 10 0.13
67 34 0.45
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (60 bp):
AAAATTACAATATTCATACAAAATATAATACCAAAATATAAATACAAATTAAATTATAAA
Found at i:14755295 original size:27 final size:27
Alignment explanation
Indices: 14755257--14755323 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
14755247 AATTACAATA
*
14755257 TTCATTGGCGCCTCTCTATGAGGCACC
1 TTCATTGGCGCCTCTCTATGAAGCACC
*
14755284 TTCATTGGCGCCTCTCTGTGAAGCACC
1 TTCATTGGCGCCTCTCTATGAAGCACC
14755311 TTCATTGGCGCCT
1 TTCATTGGCGCCT
14755324 ACCTGATAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.13, C:0.33, G:0.22, T:0.31
Consensus pattern (27 bp):
TTCATTGGCGCCTCTCTATGAAGCACC
Found at i:14760433 original size:106 final size:106
Alignment explanation
Indices: 14760248--14760454 Score: 360
Period size: 106 Copynumber: 2.0 Consensus size: 106
14760238 ATTGAAGATA
*
14760248 TATGATTTGGACACACGAATCATACAAAAAGAGGTTAGTATGTCTCATAAATTCCATCTTAAGTC
1 TATGATTTGGACACACGAATCATAAAAAAAGAGGTTAGTATGTCTCATAAATTCCATCTTAAGTC
* *
14760313 CAAATCTAAGAATGTAGTTATTTGGATGCTCTCTTTCGATC
66 CAAATCTAAGAATGTAGTTATTTCGACGCTCTCTTTCGATC
* *
14760354 TATGATTTGGACACACGAATCGTAAAAAAAGAGGTTAGTATGTCTCATAAATTCCATTTTAAGTC
1 TATGATTTGGACACACGAATCATAAAAAAAGAGGTTAGTATGTCTCATAAATTCCATCTTAAGTC
*
14760419 CAAATCTAAGAATGTAGTTTTTTCGACGCTCTCTTT
66 CAAATCTAAGAATGTAGTTATTTCGACGCTCTCTTT
14760455 TTGTAGTCGA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 95 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (106 bp):
TATGATTTGGACACACGAATCATAAAAAAAGAGGTTAGTATGTCTCATAAATTCCATCTTAAGTC
CAAATCTAAGAATGTAGTTATTTCGACGCTCTCTTTCGATC
Found at i:14773579 original size:22 final size:22
Alignment explanation
Indices: 14773554--14773598 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14773544 TATAAGGCAT
14773554 TGTTTAACATGTAGACTTTCTC
1 TGTTTAACATGTAGACTTTCTC
14773576 TGTTTAACATGTAGACTTTCTC
1 TGTTTAACATGTAGACTTTCTC
14773598 T
1 T
14773599 TCCTGTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (22 bp):
TGTTTAACATGTAGACTTTCTC
Found at i:14775590 original size:18 final size:18
Alignment explanation
Indices: 14775549--14775591 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
14775539 TAATAAAAAA
14775549 ATAAATAAATGAAAATAT
1 ATAAATAAATGAAAATAT
*
14775567 AGAAATGAAATGAAAATAT
1 ATAAAT-AAATGAAAATAT
14775586 -TAAATA
1 ATAAATA
14775592 TATATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 9 0.41
19 12 0.55
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAATAAATGAAAATAT
Found at i:14776758 original size:24 final size:26
Alignment explanation
Indices: 14776717--14776774 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
14776707 AGGGGGGCTA
*
14776717 GGGTTTGTTTTTAGTTTTATGCTG-TT
1 GGGTTTG-TTTTAGTTTTAGGCTGTTT
*
14776743 GGGTTTG-TTTAGTTTTGGGCTGTTT
1 GGGTTTGTTTTAGTTTTAGGCTGTTT
14776768 GGGTTTG
1 GGGTTTG
14776775 GGTGTAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 13 0.45
25 9 0.31
26 7 0.24
ACGTcount: A:0.05, C:0.03, G:0.34, T:0.57
Consensus pattern (26 bp):
GGGTTTGTTTTAGTTTTAGGCTGTTT
Found at i:14782220 original size:19 final size:19
Alignment explanation
Indices: 14782196--14782365 Score: 58
Period size: 20 Copynumber: 9.1 Consensus size: 19
14782186 ATTATAAAAA
14782196 ATAAAAATTTATAAAATTT
1 ATAAAAATTTATAAAATTT
** *
14782215 ATAAAAAAAATATTAAATTT
1 AT-AAAAATTTATAAAATTT
14782235 -TAATAAATAATTA-AAAA-TT
1 ATAA-AAAT--TTATAAAATTT
* *
14782254 A-AAAAA--TATAAAAATC
1 ATAAAAATTTATAAAATTT
* *
14782270 GTAAAAATATA-AAAATTT
1 ATAAAAATTTATAAAATTT
* *
14782288 -TAAAATTTTATAAAA-TC
1 ATAAAAATTTATAAAATTT
*
14782305 ATAAGAAAATTATAAAAATTT
1 ATAA-AAATTTAT-AAAATTT
*
14782326 -TAAAGAA-ATATAAAATTCGT
1 ATAAA-AATTTATAAAATT--T
* *
14782346 A-AAAAAATTATAAAAATT
1 ATAAAAATTTATAAAATTT
14782364 AT
1 AT
14782366 CATTCCAAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 42
0.65 0.11 0.24
Matches are distributed among these distances:
14 2 0.02
15 4 0.04
16 1 0.01
17 14 0.13
18 25 0.23
19 24 0.22
20 38 0.34
21 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
ATAAAAATTTATAAAATTT
Found at i:14782326 original size:38 final size:39
Alignment explanation
Indices: 14782252--14782363 Score: 119
Period size: 38 Copynumber: 3.0 Consensus size: 39
14782242 TAATTAAAAA
* *
14782252 TTAAA-AAATATAAAAATCGT--AAAAA-TATAAAAATT
1 TTAAAGAAATATAAAATTCATAAAAAAATTATAAAAATT
** *
14782287 TTAAA-ATTTTATAAAA-TCATAAGAAAATTATAAAAATT
1 TTAAAGA-AATATAAAATTCATAAAAAAATTATAAAAATT
*
14782325 TTAAAGAAATATAAAATTCGTAAAAAAATTATAAAAATT
1 TTAAAGAAATATAAAATTCATAAAAAAATTATAAAAATT
14782364 ATCATTCCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
35 9 0.14
36 7 0.11
37 4 0.06
38 22 0.35
39 21 0.33
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (39 bp):
TTAAAGAAATATAAAATTCATAAAAAAATTATAAAAATT
Found at i:14782360 original size:9 final size:9
Alignment explanation
Indices: 14782182--14782365 Score: 101
Period size: 9 Copynumber: 20.0 Consensus size: 9
14782172 GACGTGTGGA
14782182 AAAAATTAT
1 AAAAATTAT
14782191 AAAAA--AT
1 AAAAATTAT
14782198 AAAAATTTAT
1 AAAAA-TTAT
*
14782208 AAAATTTAT
1 AAAAATTAT
**
14782217 AAAAAAAAT
1 AAAAATTAT
* *
14782226 ATTAAATTTT
1 A-AAAATTAT
*
14782236 AATAAATAATT
1 AA-AAATTA-T
14782247 AAAAATTA-
1 AAAAATTAT
14782255 AAAAA-TAT
1 AAAAATTAT
**
14782263 AAAAATCGT
1 AAAAATTAT
14782272 AAAAA-TAT
1 AAAAATTAT
14782280 AAAAATT-T
1 AAAAATTAT
* *
14782288 TAAAATTTT
1 AAAAATTAT
*
14782297 ATAAAATCAT
1 A-AAAATTAT
14782307 AAGAAAATTAT
1 -A-AAAATTAT
*
14782318 AAAAATTTT
1 AAAAATTAT
*
14782327 AAAGAAATAT
1 AAA-AATTAT
* *
14782337 AAAATTCGTAA
1 AAAAAT--TAT
14782348 AAAAATTAT
1 AAAAATTAT
14782357 AAAAATTAT
1 AAAAATTAT
14782366 CATTCCAAAA
Statistics
Matches: 130, Mismatches: 30, Indels: 30
0.68 0.16 0.16
Matches are distributed among these distances:
7 9 0.07
8 23 0.18
9 46 0.35
10 34 0.26
11 18 0.14
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:14782568 original size:9 final size:9
Alignment explanation
Indices: 14782536--14782672 Score: 64
Period size: 9 Copynumber: 14.6 Consensus size: 9
14782526 TTAAAGGGCT
14782536 TTTTTATACA
1 TTTTTATA-A
14782546 -TTTTATAA
1 TTTTTATAA
*
14782554 TCTTTTATGA
1 T-TTTTATAA
14782564 TTTTTATAAA
1 TTTTTAT-AA
*
14782574 TTTTTACAA
1 TTTTTATAA
*
14782583 TTTTTATAT
1 TTTTTATAA
*
14782592 TTTTTAACAA
1 TTTTT-ATAA
*
14782602 TTTTTTTCTAA
1 --TTTTTATAA
*
14782613 TTTTGAATAAA
1 TTTT-TAT-AA
* *
14782624 ATTTAATAA
1 TTTTTATAA
* *
14782633 CTTTTATAT
1 TTTTTATAA
*
14782642 TTTTTATTGA
1 TTTTTA-TAA
*
14782652 TTTCTAT--
1 TTTTTATAA
14782659 TTTTTATAA
1 TTTTTATAA
14782668 TTTTT
1 TTTTT
14782673 TGTCACATGT
Statistics
Matches: 96, Mismatches: 20, Indels: 23
0.69 0.14 0.17
Matches are distributed among these distances:
7 6 0.06
8 1 0.01
9 50 0.52
10 27 0.28
11 7 0.07
12 5 0.05
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14782568 original size:19 final size:18
Alignment explanation
Indices: 14782546--14782606 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 18
14782536 TTTTTATACA
**
14782546 TTTTATAATCTTTTATGAT
1 TTTTATAAT-TTTTACAAT
14782565 TTTTATAAATTTTTACAAT
1 TTTTAT-AATTTTTACAAT
*
14782584 TTTTATATTTTTTAACAAT
1 TTTTATAATTTTT-ACAAT
14782603 TTTT
1 TTTT
14782607 TTCTAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 6 0.16
19 28 0.76
20 3 0.08
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTTACAAT
Found at i:14782596 original size:28 final size:30
Alignment explanation
Indices: 14782535--14782606 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 30
14782525 GTTAAAGGGC
* *
14782535 TTTTTTATACA-TTTTATAATCTTTTATGA
1 TTTTTTATAAATTTTTACAATCTTTTATGA
14782564 -TTTTTATAAATTTTTACAAT-TTTTAT-A
1 TTTTTTATAAATTTTTACAATCTTTTATGA
14782591 TTTTTTA-ACAATTTTT
1 TTTTTTATA-AATTTTT
14782607 TTCTAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 2 0.05
28 28 0.74
29 8 0.21
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (30 bp):
TTTTTTATAAATTTTTACAATCTTTTATGA
Found at i:14788298 original size:22 final size:24
Alignment explanation
Indices: 14788269--14788321 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
14788259 TTTAATTAGC
14788269 AAATATA-TATTTTAA-AATTTATAA
1 AAATATATTA-TTTAATAATTT-TAA
14788293 AAATATATTATTTAATAATTTTAA
1 AAATATATTATTTAATAATTTTAA
14788317 AAATA
1 AAATA
14788322 ACACAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 20 0.74
25 7 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATATATTATTTAATAATTTTAA
Found at i:14792260 original size:16 final size:16
Alignment explanation
Indices: 14792235--14792283 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
14792225 TTGATTTGCT
*
14792235 ATTACGCCTCTATTCC
1 ATTACTCCTCTATTCC
14792251 ATTACTCCTCTATTCC
1 ATTACTCCTCTATTCC
14792267 ATTA-TGCCTCTATTCC
1 ATTACT-CCTCTATTCC
14792283 A
1 A
14792284 ATACAGCGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.20, C:0.35, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACTCCTCTATTCC
Found at i:14794354 original size:12 final size:12
Alignment explanation
Indices: 14794308--14794354 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
14794298 CCCTTGTTAT
14794308 TTGTTC-TTT-C
1 TTGTTCTTTTGC
14794318 TT-TTCTTTTGC
1 TTGTTCTTTTGC
*
14794329 TCGTTCTTTTGC
1 TTGTTCTTTTGC
14794341 TTGTTCTTTTGC
1 TTGTTCTTTTGC
14794353 TT
1 TT
14794355 AAAATGCGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 3 0.09
10 5 0.16
11 2 0.06
12 22 0.69
ACGTcount: A:0.00, C:0.19, G:0.13, T:0.68
Consensus pattern (12 bp):
TTGTTCTTTTGC
Found at i:14794849 original size:32 final size:32
Alignment explanation
Indices: 14794806--14794887 Score: 146
Period size: 32 Copynumber: 2.6 Consensus size: 32
14794796 ACGAGACGTG
*
14794806 TACAACGCATTAATTAAATGTGTATATTCATA
1 TACAACTCATTAATTAAATGTGTATATTCATA
14794838 TACAACTCATTAATTAAATGTGTATATTCATA
1 TACAACTCATTAATTAAATGTGTATATTCATA
*
14794870 TACTACTCATTAATTAAA
1 TACAACTCATTAATTAAA
14794888 AATATTTCTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.39
Consensus pattern (32 bp):
TACAACTCATTAATTAAATGTGTATATTCATA
Found at i:14796350 original size:26 final size:28
Alignment explanation
Indices: 14796296--14796358 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
14796286 TAAGAATAAG
* *
14796296 AATTTTATTAAATTATATATTATTATTA
1 AATTATATTAAATAATATATTATTATTA
*
14796324 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTAAATAATATATTATTATTA
14796350 AATTATATT
1 AATTATATT
14796359 GTAGTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 12 0.38
27 6 0.19
28 14 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AATTATATTAAATAATATATTATTATTA
Found at i:14796429 original size:108 final size:105
Alignment explanation
Indices: 14796209--14796468 Score: 301
Period size: 117 Copynumber: 2.3 Consensus size: 105
14796199 AATAAAGTAG
14796209 ATTA-TAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTATTTAAATTATA-TTTATAGTATTATATATTATGATTT
14796273 TAGTAAATTCATATAAGAATAAGAATTTTATTAAATTATATATT
65 TAGTAAATTCATATAAGAAT---AATTTTATTAAATTATATATT
*
14796317 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATA-TTGTAGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTATAGTATTATATATTATGA--T
14796381 TATTAGTAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATT
63 T-TTAGTAAATTCATATAAG---A---A-T---AATTTTATTAAATTATATATT
* *
14796435 -TTATTAAATTATATTTTATAACAATTATGTTAAA
1 ATTATTAAATTATATTTAATAATAATTAT-TTAAA
14796469 ATATGATTAA
Statistics
Matches: 135, Mismatches: 4, Indels: 17
0.87 0.03 0.11
Matches are distributed among these distances:
108 24 0.18
109 23 0.17
110 13 0.10
111 18 0.13
114 1 0.01
116 1 0.01
117 31 0.23
118 24 0.18
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (105 bp):
ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTATAGTATTATATATTATGATTTT
AGTAAATTCATATAAGAATAATTTTATTAAATTATATATT
Found at i:14796453 original size:15 final size:17
Alignment explanation
Indices: 14796415--14796448 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14796405 TTTATTAACA
14796415 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
14796432 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
14796449 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:14796462 original size:16 final size:15
Alignment explanation
Indices: 14796415--14796462 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
14796405 TTTATTAACA
*
14796415 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
14796432 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
14796447 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
14796463 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:14801021 original size:4 final size:4
Alignment explanation
Indices: 14801012--14801038 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
14801002 AATAAACATC
14801012 ATTA ATTA ATTA ATTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATT
14801039 TCCCAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:14805463 original size:28 final size:27
Alignment explanation
Indices: 14805406--14805463 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
14805396 CTTCTAAAAG
* * *
14805406 AAAACTCAAGAGAAATTTTTTAAGATA
1 AAAACTCAAAAGAAATTTTTTAACACA
14805433 AAAACTCGAAAAG-AATTTTATTAACACA
1 AAAACTC-AAAAGAAATTTT-TTAACACA
14805461 AAA
1 AAA
14805464 GAGAAAGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.55, C:0.10, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAACTCAAAAGAAATTTTTTAACACA
Found at i:14812502 original size:33 final size:34
Alignment explanation
Indices: 14812449--14812524 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 34
14812439 CAAATTTAAA
14812449 AAAATTAATTACTAACACTTATTTAAGCTAAACT
1 AAAATTAATTACTAACACTTATTTAAGCTAAACT
* * *
14812483 AAAATTAATT-CTAACACTTATTTGAGTTGAACT
1 AAAATTAATTACTAACACTTATTTAAGCTAAACT
*
14812516 AAATTTAAT
1 AAAATTAAT
14812525 AAACTAACTC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
33 28 0.74
34 10 0.26
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (34 bp):
AAAATTAATTACTAACACTTATTTAAGCTAAACT
Found at i:14814317 original size:18 final size:18
Alignment explanation
Indices: 14814294--14814332 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14814284 CTCTTTTTGC
14814294 TCTTTTTC-ATTCTCTTTT
1 TCTTTTTCGATT-TCTTTT
14814312 TCTTTTTCGATTTCTTTT
1 TCTTTTTCGATTTCTTTT
14814330 TCT
1 TCT
14814333 GTCTTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.72
Consensus pattern (18 bp):
TCTTTTTCGATTTCTTTT
Found at i:14816480 original size:19 final size:19
Alignment explanation
Indices: 14816453--14816489 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14816443 AGTCTAGTTT
*
14816453 GAACTTCTTATTGGGCCTG
1 GAACATCTTATTGGGCCTG
14816472 GAACATCTTATTGGGCCT
1 GAACATCTTATTGGGCCT
14816490 TGTCTTCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (19 bp):
GAACATCTTATTGGGCCTG
Found at i:14821361 original size:15 final size:14
Alignment explanation
Indices: 14821327--14821379 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
14821317 TATTGAGCGA
14821327 GAAAGAGAAAAAGAG
1 GAAA-AGAAAAAGAG
*
14821342 AAAAAGAAAAAGAG
1 GAAAAGAAAAAGAG
*
14821356 TGAAAAGAAAAAGAAA
1 -GAAAAGAAAAAG-AG
14821372 GAAAAGAA
1 GAAAAGAA
14821380 TGATGAGAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 10 0.30
15 22 0.67
16 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (14 bp):
GAAAAGAAAAAGAG
Found at i:14821448 original size:20 final size:21
Alignment explanation
Indices: 14821395--14821449 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
14821385 AGAGTGATAA
* *
14821395 AAAAAACAAGAGCGACAAAAG
1 AAAAAACAAGTGTGACAAAAG
* *
14821416 AAAAAAAAGAGTGTGA-AAATG
1 AAAAAACA-AGTGTGACAAAAG
14821437 AAAAAACAAGTGT
1 AAAAAACAAGTGT
14821450 TTTTGCCAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 5 0.18
ACGTcount: A:0.64, C:0.07, G:0.20, T:0.09
Consensus pattern (21 bp):
AAAAAACAAGTGTGACAAAAG
Found at i:14833471 original size:255 final size:255
Alignment explanation
Indices: 14833016--14833529 Score: 1010
Period size: 255 Copynumber: 2.0 Consensus size: 255
14833006 TATAGAAGTC
14833016 CTAAGGAGTCTTGGAAACAAGAAGAATCCACAACCCTCTTAAGCGACTCTAATTTCCCCTCCAAG
1 CTAAGGAGTCTTGGAAACAAGAAGAATCCACAACCCTCTTAAGCGACTCTAATTTCCCCTCCAAG
14833081 AAAGAAAACTTGCCAAGAAAATTTTGAAGATGATCTCCATAATCTGAAAAGATTGTTAAAACTCT
66 AAAGAAAACTTGCCAAGAAAATTTTGAAGATGATCTCCATAATCTGAAAAGATTGTTAAAACTCT
*
14833146 TTTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAATCAAAGAGAATTTATTGACTCAAAATA
131 TTTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAATCAAAGAGAATTTATTGACTCAAAAGA
14833211 GAAGTTGAATAATAATGAATTGATTGATTTGTGTACAATACAAAGGCCTATATAGGCTAG
196 GAAGTTGAATAATAATGAATTGATTGATTTGTGTACAATACAAAGGCCTATATAGGCTAG
14833271 CTAAGGAGTCTTGGAAACAAGAAGAATCCACAACCCTCTTAAGCGACTCTAATTTCCCCTCCAAG
1 CTAAGGAGTCTTGGAAACAAGAAGAATCCACAACCCTCTTAAGCGACTCTAATTTCCCCTCCAAG
*
14833336 AAAGAAAACTTGGCAAGAAAATTTTGAAGATGATCTCCATAATCTGAAAAGATTGTTAAAACTCT
66 AAAGAAAACTTGCCAAGAAAATTTTGAAGATGATCTCCATAATCTGAAAAGATTGTTAAAACTCT
14833401 TTTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAATCAAAGAGAATTTATTGACTCAAAAGA
131 TTTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAATCAAAGAGAATTTATTGACTCAAAAGA
14833466 GAAGTTGAATAATAATGAATTGATTGATTTGTGTACAATACAAAGGCCTATATAGGCTAG
196 GAAGTTGAATAATAATGAATTGATTGATTTGTGTACAATACAAAGGCCTATATAGGCTAG
14833526 CTAA
1 CTAA
14833530 ATAAATCTAA
Statistics
Matches: 257, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 257 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (255 bp):
CTAAGGAGTCTTGGAAACAAGAAGAATCCACAACCCTCTTAAGCGACTCTAATTTCCCCTCCAAG
AAAGAAAACTTGCCAAGAAAATTTTGAAGATGATCTCCATAATCTGAAAAGATTGTTAAAACTCT
TTTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAATCAAAGAGAATTTATTGACTCAAAAGA
GAAGTTGAATAATAATGAATTGATTGATTTGTGTACAATACAAAGGCCTATATAGGCTAG
Found at i:14835197 original size:23 final size:24
Alignment explanation
Indices: 14835137--14835197 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
14835127 ATTTTCTTAT
* * *
14835137 TTATTGTTCTATTATTCTATTTTAC
1 TTATTTTTCT-TTATTCTATTTCAA
**
14835162 TTATTTTAGTTTATT-TATTTCAA
1 TTATTTTTCTTTATTCTATTTCAA
14835185 TTATTTTTCTTTA
1 TTATTTTTCTTTA
14835198 AATTTTTTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
23 17 0.59
24 5 0.17
25 7 0.24
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.67
Consensus pattern (24 bp):
TTATTTTTCTTTATTCTATTTCAA
Found at i:14838193 original size:28 final size:26
Alignment explanation
Indices: 14838160--14838238 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 26
14838150 CTTTCACATT
14838160 AGATCGTCATGACGGACTTCCACATTTA
1 AGATCGTC-TGA-GGACTTCCACATTTA
* * **
14838188 AGATCGTTCTGATGAATTTCCATGTTTA
1 AGATCG-TCTGA-GGACTTCCACATTTA
14838216 AGATCGTCCTGGAGGACTTCCAC
1 AGATCGT-CT-GAGGACTTCCAC
14838239 GCTTAGGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
27 1 0.03
28 35 0.88
29 4 0.10
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (26 bp):
AGATCGTCTGAGGACTTCCACATTTA
Found at i:14838265 original size:56 final size:56
Alignment explanation
Indices: 14838205--14838349 Score: 175
Period size: 56 Copynumber: 2.6 Consensus size: 56
14838195 TCTGATGAAT
* * * * * *
14838205 TTCCATGTTTAAGATCGTCCT-GGAGGACTTCCACGCTTAGGATTATTCTGGCAGAC
1 TTCCACGTTTAAGATCGTCCTAGCA-AACTTCCACGCTTAAGATCATTCTGACAGAC
* * *
14838261 TTCCACGTTTAAGATTGTCCTAGCAAACTTCCACGTTTAAGATCATTCTGACGGAC
1 TTCCACGTTTAAGATCGTCCTAGCAAACTTCCACGCTTAAGATCATTCTGACAGAC
* *
14838317 TTCCACGTTTAAAATCATCCTAGCAAACTTCCA
1 TTCCACGTTTAAGATCGTCCTAGCAAACTTCCA
14838350 TGTGTATGGT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
56 74 0.97
57 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (56 bp):
TTCCACGTTTAAGATCGTCCTAGCAAACTTCCACGCTTAAGATCATTCTGACAGAC
Found at i:14838290 original size:28 final size:27
Alignment explanation
Indices: 14838174--14838349 Score: 120
Period size: 28 Copynumber: 6.3 Consensus size: 27
14838164 CGTCATGACG
* * *
14838174 GACTTCCACATTTAAGATCGTTCTG-A
1 GACTTCCACGTTTAAGATCATCCTGCA
* * * *
14838200 TGAATTTCCATGTTTAAGATCGTCCTGGA
1 -G-ACTTCCACGTTTAAGATCATCCTGCA
* * * *
14838229 GGACTTCCACGCTTAGGATTATTCTGGCA
1 -GACTTCCACGTTTAAGATCATCCT-GCA
**
14838258 GACTTCCACGTTTAAGATTGTCCTAGCA
1 GACTTCCACGTTTAAGATCATCCT-GCA
* * *
14838286 AACTTCCACGTTTAAGATCATTCTGACG
1 GACTTCCACGTTTAAGATCATCCTG-CA
*
14838314 GACTTCCACGTTTAAAATCATCCTAGCA
1 GACTTCCACGTTTAAGATCATCCT-GCA
*
14838342 AACTTCCA
1 GACTTCCA
14838350 TGTGTATGGT
Statistics
Matches: 116, Mismatches: 28, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
27 2 0.02
28 109 0.94
29 5 0.04
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (27 bp):
GACTTCCACGTTTAAGATCATCCTGCA
Found at i:14838437 original size:22 final size:23
Alignment explanation
Indices: 14838385--14838457 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 23
14838375 GACTTCCATT
* * *
14838385 CATCCCATAAGGGGCTCTCATATG
1 CATCCCAAAAAGGGCTCT-ATATA
14838409 CATCCCAAAAAGGGCTCT-TATA
1 CATCCCAAAAAGGGCTCTATATA
*
14838431 CATCCCACACAAGGGACTCTCATATA
1 CATCCCA-AAAAGGG-CTCT-ATATA
14838457 C
1 C
14838458 GAATGCGCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 10 0.24
23 6 0.15
24 20 0.49
26 5 0.12
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.22
Consensus pattern (23 bp):
CATCCCAAAAAGGGCTCTATATA
Found at i:14844300 original size:14 final size:14
Alignment explanation
Indices: 14844276--14844314 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14844266 TTAGCAAAAC
*
14844276 AAAATAGATAAATA
1 AAAATAAATAAATA
*
14844290 TAAATAAATAAATA
1 AAAATAAATAAATA
14844304 AAATATAAATA
1 AAA-ATAAATA
14844315 GAACAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (14 bp):
AAAATAAATAAATA
Found at i:14850983 original size:81 final size:81
Alignment explanation
Indices: 14850540--14850957 Score: 737
Period size: 81 Copynumber: 5.2 Consensus size: 81
14850530 GCCTGAAGAT
* *
14850540 AAGTTTCCTTGGAGCTGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
1 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
* *
14850605 CTCTTCGGCAGGACTC
66 TTCTTTGGCAGGACTC
* *
14850621 AAGTTTTGTTGGAGCAGTGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
1 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
14850686 TTCTTTGGCAGGACTC
66 TTCTTTGGCAGGACTC
14850702 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
1 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
14850767 TTCTTTGGCAGGACTC
66 TTCTTTGGCAGGACTC
**
14850783 AAGTGCCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
1 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
14850848 TTCTTTGGCAGGACTC
66 TTCTTTGGCAGGACTC
* *
14850864 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCGAGAT
1 AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
14850929 TTCTTTGGCAGGACTC
66 TTCTTTGGCAGGACTC
*
14850945 AAGTTTCCTTGGA
1 AAGTTTCGTTGGA
14850958 CTAAACTCCT
Statistics
Matches: 322, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 322 1.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (81 bp):
AAGTTTCGTTGGAGCAGAGTCCTCACCTCTACTATTTTGATCATCAGAATTTCTGTTGTCAAGAG
TTCTTTGGCAGGACTC
Found at i:14851158 original size:84 final size:84
Alignment explanation
Indices: 14851056--14851248 Score: 255
Period size: 84 Copynumber: 2.3 Consensus size: 84
14851046 GTTCCTCGAT
* * *
14851056 TCTACTGTTTTTGTTATCACCATTTTGGTTGTCAACAATTACTCTTCG-CCGAAATTTCAGTCTC
1 TCTACCGTTTTGGTTATCACCATTTTGGTTGTCAACAATTACTCTTCGTCCG-AACTTCAGTCTC
*
14851120 ATT-GGAGTACACTCCTTGAC
65 -TTCGGAGTAAACTCCTTGAC
* * * *
14851140 TTTACCGTTTTGGTTATCACCATTTTGGTTGTCAACAATTTCTCTTCGTCTGAACTTGAGTCTCT
1 TCTACCGTTTTGGTTATCACCATTTTGGTTGTCAACAATTACTCTTCGTCCGAACTTCAGTCTCT
*
14851205 TCGGGGTAAACTCCTTGAC
66 TCGGAGTAAACTCCTTGAC
* *
14851224 TCTACTGTTTTGGTTATCATCATTT
1 TCTACCGTTTTGGTTATCACCATTT
14851249 ATGTTATTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
83 2 0.02
84 91 0.96
85 2 0.02
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (84 bp):
TCTACCGTTTTGGTTATCACCATTTTGGTTGTCAACAATTACTCTTCGTCCGAACTTCAGTCTCT
TCGGAGTAAACTCCTTGAC
Found at i:14851278 original size:84 final size:84
Alignment explanation
Indices: 14851056--14851287 Score: 231
Period size: 84 Copynumber: 2.8 Consensus size: 84
14851046 GTTCCTCGAT
* * * * * * *
14851056 TCTACTGTTTTTGTTATCACCATTTTGGTTGTCAACAATTACTCTTCG-CCGAAATTTCAGTCTC
1 TCTACCGTTTTGGTTATCACCATTTTGGTTATCAACAATTACCCTTCGTCTG-AACTTGAGTCTC
* *
14851120 ATT-GGAGTACACTCCTTGAC
65 -TTCGGGGTAAACTCCTTGAC
* * * *
14851140 TTTACCGTTTTGGTTATCACCATTTTGGTTGTCAACAATTTCTCTTCGTCTGAACTTGAGTCTCT
1 TCTACCGTTTTGGTTATCACCATTTTGGTTATCAACAATTACCCTTCGTCTGAACTTGAGTCTCT
14851205 TCGGGGTAAACTCCTTGAC
66 TCGGGGTAAACTCCTTGAC
* * * *
14851224 TCTACTGTTTTGGTTATCATCATTTAT-GTTATTAAC-ATATACCCTTTG-CTTGAACTTGAGTC
1 TCTACCGTTTTGGTTATCACCATTT-TGGTTATCAACAAT-TACCCTTCGTC-TGAACTTGAGTC
14851286 TC
63 TC
14851288 CTTGGAGTAC
Statistics
Matches: 126, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
83 5 0.04
84 118 0.94
85 3 0.02
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (84 bp):
TCTACCGTTTTGGTTATCACCATTTTGGTTATCAACAATTACCCTTCGTCTGAACTTGAGTCTCT
TCGGGGTAAACTCCTTGAC
Found at i:14854815 original size:20 final size:21
Alignment explanation
Indices: 14854776--14854817 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14854766 AAGACTTCTA
**
14854776 AACATCTTAGAAAATGTTTTG
1 AACATCTTAGAAAAAATTTTG
14854797 AACA-CTTAGAAAAAATTTTG
1 AACATCTTAGAAAAAATTTTG
14854817 A
1 A
14854818 CAAAGTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (21 bp):
AACATCTTAGAAAAAATTTTG
Found at i:14872651 original size:94 final size:94
Alignment explanation
Indices: 14872446--14872665 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
14872436 CCTTCACACC
* * *
14872446 ACATTGTGGAT-AACCACTGATCGTTGCAGATGAACTGCTAACAATAAGAATATTGGTGGATGAA
1 ACATTGTGGATGAACCACTGGTCG-TGCAGATAAACTGCCAACAATAAG-ATATTGGTGGATGAA
* ** * *
14872510 CCATCCTTTTGTGTATATCAAATATGCTAAT
64 CCATCCATAGGTGCAAATCAAATATGCTAAT
*
14872541 ACATTGTGGATGAACCACTGGTCGTGCAGATAAACTGCCAACTAA-AAG-TATTGGTGGATTAAC
1 ACATTGTGGATGAACCACTGGTCGTGCAGATAAACTGCCAAC-AATAAGATATTGGTGGATGAAC
* *
14872604 CATCCATAGGTGCAAAT-AAATGTTGTTTAAT
65 CATCCATAGGTGCAAATCAAAT-ATG-CTAAT
** *
14872635 ATGTTGTGGATGAACCACTGGTCGAGCAGAT
1 ACATTGTGGATGAACCACTGGTCGTGCAGAT
14872666 GGCTCCCGAC
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 4 0.04
93 28 0.26
94 32 0.30
95 30 0.28
96 13 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (94 bp):
ACATTGTGGATGAACCACTGGTCGTGCAGATAAACTGCCAACAATAAGATATTGGTGGATGAACC
ATCCATAGGTGCAAATCAAATATGCTAAT
Found at i:14872691 original size:47 final size:46
Alignment explanation
Indices: 14872632--14872761 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
14872622 AATGTTGTTT
* * ** *
14872632 AATATGTTGTGGATGAACCACTGGTCGAGCAGAT-GGCTCCCGACTAA
1 AATACGTTGTGGATAAACCACTGGTCGAGCAGATAAACTACCG--TAA
* * * *
14872679 AATACGTTGTGGATAAATCGCTGGTTGAGCAGATAAACTACTGTAA
1 AATACGTTGTGGATAAACCACTGGTCGAGCAGATAAACTACCGTAA
* *
14872725 AATACGTTGTGCATAAACCACTGGTCGAGCAGGTAAA
1 AATACGTTGTGGATAAACCACTGGTCGAGCAGATAAA
14872762 TTGCCAACTA
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
46 35 0.51
47 29 0.43
48 4 0.06
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (46 bp):
AATACGTTGTGGATAAACCACTGGTCGAGCAGATAAACTACCGTAA
Found at i:14877650 original size:26 final size:29
Alignment explanation
Indices: 14877621--14877683 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 29
14877611 TTTAGTCATA
14877621 TAATAAATTA-TTAATA-TAA-TTTATTT
1 TAATAAATTATTTAATATTAATTTTATTT
*
14877647 TAATAATTTATTTAATATTTTAATTTTATTT
1 TAATAAATTATTTAATA--TTAATTTTATTT
14877678 TAATAA
1 TAATAA
14877684 TAAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 9 0.29
27 6 0.19
30 3 0.10
31 13 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
TAATAAATTATTTAATATTAATTTTATTT
Found at i:14877660 original size:12 final size:12
Alignment explanation
Indices: 14877621--14877668 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
14877611 TTTAGTCATA
*
14877621 TAATAAATTATT
1 TAATAATTTATT
*
14877633 AATATAATTTATTT
1 TA-ATAATTTA-TT
14877647 TAATAATTTATT
1 TAATAATTTATT
*
14877659 TAATATTTTA
1 TAATAATTTA
14877669 ATTTTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
12 12 0.40
13 15 0.50
14 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TAATAATTTATT
Found at i:14880553 original size:37 final size:37
Alignment explanation
Indices: 14880510--14880582 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
14880500 AGCCAAATTT
14880510 TACTGTTATATTGAAT-GAAGCTCAATTGAGCAAATCA
1 TACTGTTATATTGAATGGAA-CTCAATTGAGCAAATCA
*
14880547 TACTGTTATATTGAATGGAACTTAATTGAGCAAATC
1 TACTGTTATATTGAATGGAACTCAATTGAGCAAATC
14880583 TTACCATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 31 0.91
38 3 0.09
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (37 bp):
TACTGTTATATTGAATGGAACTCAATTGAGCAAATCA
Found at i:14880593 original size:37 final size:37
Alignment explanation
Indices: 14880515--14880593 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
14880505 AATTTTACTG
**
14880515 TTATATTGAATGAAGCTCAATTGAGCAAATCATACTG
1 TTATATTGAATGAAGCTCAATTGAGCAAATCATACCA
* *
14880552 TTATATTGAATGGAA-CTTAATTGAGCAAATCTTACCA
1 TTATATTGAAT-GAAGCTCAATTGAGCAAATCATACCA
14880589 TTATA
1 TTATA
14880594 CCAGCTGATC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 34 0.92
38 3 0.08
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (37 bp):
TTATATTGAATGAAGCTCAATTGAGCAAATCATACCA
Found at i:14882232 original size:26 final size:25
Alignment explanation
Indices: 14882178--14882233 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
14882168 CCATAATTAT
* *
14882178 ATATATTATATAATAAGACCCAAGC
1 ATATATTACATAATAAGACCCAAGA
* *
14882203 ATATATGTACATAGTAAGACCCACGA
1 ATATAT-TACATAATAAGACCCAAGA
14882229 ATATA
1 ATATA
14882234 ATATAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (25 bp):
ATATATTACATAATAAGACCCAAGA
Found at i:14886999 original size:19 final size:19
Alignment explanation
Indices: 14886965--14887019 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
14886955 AATAATAAAA
*
14886965 AATAAAAATCAATAAAACTT
1 AATAAAAAT-ATTAAAACTT
**
14886985 -ATAAAAACTATTAAATTTT
1 AATAAAAA-TATTAAAACTT
14887004 AATAAAAATATTAAAA
1 AATAAAAATATTAAAA
14887020 ATTAGAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 21 0.72
20 8 0.28
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
AATAAAAATATTAAAACTT
Found at i:14887060 original size:10 final size:10
Alignment explanation
Indices: 14887047--14887108 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
14887037 AAAAATCGCA
14887047 AAAAAATTAT
1 AAAAAATTAT
14887057 -AAAAA-TAGT
1 AAAAAATTA-T
14887066 AAAAAATTAT
1 AAAAAATTAT
*
14887076 AAAATA-TAT
1 AAAAAATTAT
* *
14887085 -AGAAATATAG
1 AAAAAAT-TAT
14887095 AAAAAATTAT
1 AAAAAATTAT
14887105 AAAA
1 AAAA
14887109 TTTTATGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
8 5 0.12
9 9 0.22
10 19 0.47
11 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:14887069 original size:19 final size:20
Alignment explanation
Indices: 14887033--14887079 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
14887023 AGAATTTTTT
*
14887033 TTATAAAAATCGCAAAAAAA
1 TTATAAAAATAGCAAAAAAA
*
14887053 TTATAAAAATAG-TAAAAAA
1 TTATAAAAATAGCAAAAAAA
14887072 TTATAAAA
1 TTATAAAA
14887080 TATATAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (20 bp):
TTATAAAAATAGCAAAAAAA
Found at i:14887079 original size:29 final size:29
Alignment explanation
Indices: 14887047--14887108 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
14887037 AAAAATCGCA
14887047 AAAAAATTATA-AAA-ATAGTAAAAAATTAT
1 AAAAAA-TATAGAAATATAG-AAAAAATTAT
*
14887076 AAAATATATAGAAATATAGAAAAAATTAT
1 AAAAAATATAGAAATATAGAAAAAATTAT
14887105 AAAA
1 AAAA
14887109 TTTTATGAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 4 0.13
29 22 0.73
30 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (29 bp):
AAAAAATATAGAAATATAGAAAAAATTAT
Found at i:14887362 original size:28 final size:27
Alignment explanation
Indices: 14887331--14887417 Score: 72
Period size: 27 Copynumber: 3.2 Consensus size: 27
14887321 TTTTTGATGC
14887331 ATTTTATATATTTTATCATTTTTATAAA
1 ATTTTATATATTTTAT-ATTTTTATAAA
* * * *
14887359 ATTTGACAATTTTTTATATTTTTA-ATA
1 ATTTTA-TATATTTTATATTTTTATAAA
14887386 ATTTT-TATTGATTTT-TATTTTTATAAA
1 ATTTTATA-T-ATTTTATATTTTTATAAA
*
14887413 TTTTT
1 ATTTT
14887418 TTCCACATAC
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
25 1 0.02
26 9 0.20
27 16 0.35
28 12 0.26
29 8 0.17
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (27 bp):
ATTTTATATATTTTATATTTTTATAAA
Found at i:14888257 original size:11 final size:11
Alignment explanation
Indices: 14888241--14888266 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14888231 ATTTTTTTAA
14888241 TTTTAAAATAT
1 TTTTAAAATAT
14888252 TTTTAAAATAT
1 TTTTAAAATAT
14888263 TTTT
1 TTTT
14888267 TTATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14889943 original size:21 final size:21
Alignment explanation
Indices: 14889904--14889943 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14889894 TGTATAAAAA
*
14889904 ATATATAAACATACTTATACT
1 ATATATAAACATAATTATACT
14889925 ATATATAAA-ATAATATATA
1 ATATATAAACATAAT-TATA
14889944 TTACATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATAAACATAATTATACT
Found at i:14889991 original size:7 final size:7
Alignment explanation
Indices: 14889970--14890002 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
14889960 CATGCACATG
14889970 AATATAAA
1 AATA-AAA
14889978 AAT-AAA
1 AATAAAA
14889984 AATAAAA
1 AATAAAA
14889991 AATAAAA
1 AATAAAA
14889998 AATAA
1 AATAA
14890003 TAATAATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 15 0.62
8 3 0.12
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
AATAAAA
Found at i:14889993 original size:13 final size:14
Alignment explanation
Indices: 14889970--14890008 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
14889960 CATGCACATG
14889970 AATATAAAAATAAA
1 AATATAAAAATAAA
14889984 AATA-AAAAATAAA
1 AATATAAAAATAAA
*
14889997 AA-ATAATAATAA
1 AATATAAAAATAA
14890009 TGATACAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 18 0.78
14 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AATATAAAAATAAA
Found at i:14890514 original size:21 final size:21
Alignment explanation
Indices: 14890488--14890563 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
14890478 AATTATGTCT
14890488 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
14890509 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
14890530 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
*
14890549 TCTAAGATTACATAT
1 TCTAAGATTGCATAT
14890564 CCTTGAAGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 18 0.35
21 34 0.65
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:14890562 original size:19 final size:19
Alignment explanation
Indices: 14890501--14890564 Score: 92
Period size: 19 Copynumber: 3.3 Consensus size: 19
14890491 AAGATTGCAT
*
14890501 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATT--AC
*
14890522 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTAC
14890541 ATATCATATCTAAGATTAC
1 ATATCATATCTAAGATTAC
14890560 ATATC
1 ATATC
14890565 CTTGAAGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 23 0.57
21 17 0.43
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
ATATCATATCTAAGATTAC
Found at i:14891060 original size:44 final size:44
Alignment explanation
Indices: 14890998--14891335 Score: 189
Period size: 44 Copynumber: 7.8 Consensus size: 44
14890988 ACCCGATGTG
*
14890998 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
* *
14891042 ATCTGCTCTACTGCAACTTCA-AGGAGATAGGAT-TATTGGATTTA
1 ATCTGCTCTACTGCAACTTCAGA-GAGATAAGATCTA-TGGTTTTA
* * *** *
14891086 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-ATGGT-TTTA
* * * * *
14891131 GTCTGC-CTCACGGTAACTTTAG-GAGGATAAGA-CT-TGATTACTTA
1 ATCTGCTCT-ACTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTA
* * * * * * * ***
14891175 GTTTGCTCCACTGGAACTTTAGGGAGATAAGA-CTA--GATGCG
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
* * *
14891216 ATCTGCTCT-CTGTAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
* * * *
14891259 ATCTACT-TCACTACAACTTCAGAGAGATAGGAT-TATTGGCTTTA
1 ATCTGCTCT-ACTGCAACTTCAGAGAGATAAGATCTA-TGGTTTTA
* * *
14891303 ATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
14891336 TCGTCATCTT
Statistics
Matches: 221, Mismatches: 53, Indels: 40
0.70 0.17 0.13
Matches are distributed among these distances:
40 19 0.09
41 8 0.04
42 2 0.01
43 14 0.06
44 148 0.67
45 30 0.14
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA
Found at i:14891237 original size:217 final size:219
Alignment explanation
Indices: 14890911--14891351 Score: 622
Period size: 217 Copynumber: 2.0 Consensus size: 219
14890901 TTGTTTATTT
* * * *
14890911 AGTCTGCCCCACTGTAATTTCAGGGGGATAAGACTTGCTTTCTTGAGTCTACTCCACTGCAACTT
1 AGTCTGCCCCACGGTAATTTCAGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACTT
* * *
14890976 CAGGGAGATAAGACCCGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTT
66 CAGGGAGATAAGACCAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTT
* *
14891041 AATCTGC-TCTACTGCAACTTCA-AGGAGATAGGATTATTGGATTTAATCTGCTCCACTGCAACT
131 AATCTACTTC-ACTACAACTTCAGA-GAGATAGGATTATTGGATTTAATCTGCTCCACTGCAACT
14891104 TCAGGGAGATAAGATTCACCATCTTC
194 TCAGGGAGATAAGATTCACCATCTTC
* * * *
14891130 AGTCTGCCTCACGGTAACTTT-AGGAGGATAAGACTTGATTACTT-AGTTTGCTCCACTGGAACT
1 AGTCTGCCCCACGGTAA-TTTCAGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACT
* * * * *
14891193 TTAGGGAGATAAGACTAGATGCGATCTGCTCT-CTGTAACTTCAGAGAGATAAGATCTGTGATTT
65 TCAGGGAGATAAGACCAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGATTT
*
14891257 TAATCTACTTCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTT
130 TAATCTACTTCACTACAACTTCAGAGAGATAGGATTATTGGATTTAATCTGCTCCACTGCAACTT
* **
14891322 TAGGGAGATAAGATTCGTCATCTTC
195 CAGGGAGATAAGATTCACCATCTTC
14891347 AGTCT
1 AGTCT
14891352 TTTAAATTGC
Statistics
Matches: 197, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
217 113 0.57
218 46 0.23
219 35 0.18
220 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (219 bp):
AGTCTGCCCCACGGTAATTTCAGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACTT
CAGGGAGATAAGACCAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTT
AATCTACTTCACTACAACTTCAGAGAGATAGGATTATTGGATTTAATCTGCTCCACTGCAACTTC
AGGGAGATAAGATTCACCATCTTC
Found at i:14891750 original size:44 final size:44
Alignment explanation
Indices: 14891700--14891820 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
14891690 ATCAGCTATT
* *
14891700 TTCAACCTACTCCACTGTTGCTCAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTT-ACAATC
14891744 TTCAACCTATTCCACTGCTGACT-AGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTG-CTCAGGGAGATAGGACTTACAATC
*
14891788 TTCAACCTATTCCACTACTG-TCCAGGGAGATAG
1 TTCAACCTATTCCACTGCTGCT-CAGGGAGATAG
14891821 AGCCAGGGTC
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
42 1 0.01
44 65 0.93
45 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTTACAATC
Found at i:14892329 original size:44 final size:44
Alignment explanation
Indices: 14892279--14892399 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 44
14892269 ATCAGCTATT
* *
14892279 TTCAACCTACTCCACTGTTGCTCAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTT-ACAATC
14892323 TTCAACCTATTCCACTGCTGACT-AGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTG-CTCAGGGAGATAGGACTTACAATC
*
14892367 TTCAACCTATTCCACTACTG-TCCAGGGAGATAG
1 TTCAACCTATTCCACTGCTGCT-CAGGGAGATAG
14892400 AGCCAGGGTC
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
42 1 0.01
44 65 0.93
45 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGCTCAGGGAGATAGGACTTACAATC
Found at i:14892462 original size:88 final size:88
Alignment explanation
Indices: 14892411--14892632 Score: 399
Period size: 88 Copynumber: 2.5 Consensus size: 88
14892401 GCCAGGGTCA
*
14892411 TCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
14892476 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * *
14892499 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTACAATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
14892564 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
*
14892587 TCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTT
14892633 CACTGATCTG
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 126 1.00
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.27
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:14892464 original size:579 final size:579
Alignment explanation
Indices: 14891366--14892465 Score: 2182
Period size: 579 Copynumber: 1.9 Consensus size: 579
14891356 AATTGCAATG
14891366 TTAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGAT
1 TTAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGAT
14891431 TTACCATCATGGTTTTAATCTGCTCCACTGTAATGCCAGAGAGATAGGATTCGCTGCCCACAGCT
66 TTACCATCATGGTTTTAATCTGCTCCACTGTAATGCCAGAGAGATAGGATTCGCTGCCCACAGCT
14891496 TAAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCGTCGTGGC
131 TAAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCGTCGTGGC
14891561 TTCAATCTGCTCCACTACAACGCCAGAGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAT
196 TTCAATCTGCTCCACTACAACGCCAGAGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAT
14891626 TGCAACGTTAAGGCGATAAAACTAATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCGAGA
261 TGCAACGTTAAGGCGATAAAACTAATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCGAGA
14891691 TCAGCTATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTC
326 TCAGCTATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTC
14891756 CACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGATAG
391 CACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGATAG
14891821 AGCCAGGGTCATCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
456 AGCCAGGGTCATCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
14891886 TACTTCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACT
521 TACTTCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACT
* *
14891945 TTAGGGAGATAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGAT
1 TTAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGAT
14892010 TTACCATCATGGTTTTAATCTGCTCCACTGTAATGCCAGAGAGATAGGATTCGCTGCCCACAGCT
66 TTACCATCATGGTTTTAATCTGCTCCACTGTAATGCCAGAGAGATAGGATTCGCTGCCCACAGCT
14892075 TAAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCGTCGTGGC
131 TAAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCGTCGTGGC
14892140 TTCAATCTGCTCCACTACAACGCCAGAGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAT
196 TTCAATCTGCTCCACTACAACGCCAGAGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAT
14892205 TGCAACGTTAAGGCGATAAAACTAATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCGAGA
261 TGCAACGTTAAGGCGATAAAACTAATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCGAGA
14892270 TCAGCTATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTC
326 TCAGCTATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTC
14892335 CACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGATAG
391 CACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGATAG
14892400 AGCCAGGGTCATCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
456 AGCCAGGGTCATCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
14892465 T
521 T
14892466 CCGCTGCAAC
Statistics
Matches: 519, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
579 519 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (579 bp):
TTAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGAT
TTACCATCATGGTTTTAATCTGCTCCACTGTAATGCCAGAGAGATAGGATTCGCTGCCCACAGCT
TAAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTCGCCGTCGTGGC
TTCAATCTGCTCCACTACAACGCCAGAGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAT
TGCAACGTTAAGGCGATAAAACTAATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCGAGA
TCAGCTATTTTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTC
CACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGATAG
AGCCAGGGTCATCGATCTGCTTCGCTATCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TACTTCACTACAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACT
Found at i:14892488 original size:44 final size:44
Alignment explanation
Indices: 14892433--14892576 Score: 119
Period size: 44 Copynumber: 3.3 Consensus size: 44
14892423 GCTATCGGTG
14892433 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
* * * * * ** * * ****
14892477 CAGGGAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTG-CAACC
* * *
14892521 CAAGAAGGCAAGATCTACAATTTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
*
14892565 CAGGGAGGCAAG
1 CAGGAAGGCAAG
14892577 GCTGGTGTCT
Statistics
Matches: 67, Mismatches: 31, Indels: 4
0.66 0.30 0.04
Matches are distributed among these distances:
43 18 0.27
44 33 0.49
45 16 0.24
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
Found at i:14892514 original size:43 final size:43
Alignment explanation
Indices: 14892461--14892602 Score: 104
Period size: 43 Copynumber: 3.3 Consensus size: 43
14892451 TATTTTTAAC
14892461 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
* **** * * * **** * ** *
14892504 CTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTACAATTTTTAAC
1 CTGCTCCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCTTCGAT
14892549 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
* *
14892592 CTACTTCGCTG
1 CTGCTCCGCTG
14892603 TCGGTGCAGG
Statistics
Matches: 63, Mismatches: 34, Indels: 4
0.62 0.34 0.04
Matches are distributed among these distances:
43 25 0.40
44 22 0.35
45 16 0.25
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (43 bp):
CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
Found at i:14893972 original size:14 final size:15
Alignment explanation
Indices: 14893949--14893981 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14893939 ATCGACACTT
14893949 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
14893963 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
14893978 TTCC
1 TTCC
14893982 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:14899126 original size:3 final size:3
Alignment explanation
Indices: 14899113--14899156 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
14899103 GCGCATGAAT
*
14899113 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14899157 GATACAAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14899411 original size:23 final size:23
Alignment explanation
Indices: 14899385--14899429 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14899375 AAGAGATTTG
* *
14899385 AAATCAACAATATACAAATCAAT
1 AAATAAACAATACACAAATCAAT
**
14899408 AAATAAATTATACACAAATCAA
1 AAATAAACAATACACAAATCAA
14899430 CAAAATAAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATAAACAATACACAAATCAAT
Found at i:14907879 original size:21 final size:21
Alignment explanation
Indices: 14907847--14907887 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14907837 AGGCTCGAGG
14907847 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
14907868 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
14907888 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:14912458 original size:11 final size:11
Alignment explanation
Indices: 14912418--14912469 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 11
14912408 AGCCCATTTT
14912418 TATTTT-AAAA
1 TATTTTAAAAA
14912428 -ATTTTAAAAA
1 TATTTTAAAAA
**
14912438 -ATTAAAAAAA
1 TATTTTAAAAA
14912448 GTATTTTAAAAA
1 -TATTTTAAAAA
14912460 TATTTTAAAA
1 TATTTTAAAA
14912470 TTAAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 5 0.14
10 12 0.34
11 10 0.29
12 8 0.23
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:14912488 original size:31 final size:31
Alignment explanation
Indices: 14912418--14912484 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
14912408 AGCCCATTTT
14912418 TATTTTAAAAATTTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATTTTAAAAAATTAAAAAAAG
*
14912449 TATTTTAAAAATATTT-TAAAATTAAAAAAA-
1 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
14912479 TATTTT
1 TATTTT
14912485 TAAACCCTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 6 0.18
31 25 0.74
32 3 0.09
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (31 bp):
TATTTTAAAAATTTTAAAAAATTAAAAAAAG
Found at i:14915792 original size:35 final size:35
Alignment explanation
Indices: 14915745--14915855 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
14915735 TATGTTTGAC
* * *
14915745 GTGTTTCAGTTGGATTAGCTTTTATGAGCATTGAT
1 GTGTTACAGTTGGATTAGCTCTTATGAGCATTGGT
* * *
14915780 GTGTTACGGTTGGATTAACTCTTATGAGCATTGGC
1 GTGTTACAGTTGGATTAGCTCTTATGAGCATTGGT
* *
14915815 ATGTTACAGTTGGATTGGCTCTTATGAGCATCTGGT
1 GTGTTACAGTTGGATTAGCTCTTATGAGCAT-TGGT
14915851 GTGTT
1 GTGTT
14915856 TGGGTGGTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 56 0.89
36 7 0.11
ACGTcount: A:0.19, C:0.12, G:0.28, T:0.41
Consensus pattern (35 bp):
GTGTTACAGTTGGATTAGCTCTTATGAGCATTGGT
Found at i:14919865 original size:235 final size:235
Alignment explanation
Indices: 14919454--14919922 Score: 823
Period size: 235 Copynumber: 2.0 Consensus size: 235
14919444 TAACAATGAT
*
14919454 GAATTAAATGTTATGTTTATATATATATGGATGACTTATGGTCAAATATGTTTAAGTTTAGGTAT
1 GAATTAAATGTTATGTTTATATATATATGGATGACTTATGGTCAAATATGTATAAGTTTAGGTAT
* * *
14919519 ATATGTGTTTTAGATGCACTCTTATATATTAACCCTATGGCATTGGTATAGGTTTATAATTACCC
66 ATATGTGTTTTAGATGCACTCCTATATATTAACCCTATGGCATTAGTATAAGTTTATAATTACCC
14919584 CATAAAGTTTCATTATTAAAATGAAATGTTATGTTTAAAGTTTATACGAGCTCACTAAGCATTCA
131 CATAAAGTTTCATTATTAAAATGAAATGTTATGTTTAAAGTTTATACGAGCTCACTAAGCATTCA
* *
14919649 TTGCTTACGTAGTTATTTTCCTTTACTTAACAGATTATCA
196 TTGCTTACGTAGTTATTTTCCTTGACTTAACAAATTATCA
14919689 GAATTAAATGTTATGTTTATATATATATGGATGACTTATGGTCAAATATGTATAAGTTTAGGTAT
1 GAATTAAATGTTATGTTTATATATATATGGATGACTTATGGTCAAATATGTATAAGTTTAGGTAT
* * *
14919754 ATGTGTGTTTTAGATGCATTCCTATATATTAATCCC-ATGGCATTAGTATAAGTTTATAATTACG
66 ATATGTGTTTTAGATGCACTCCTATATATTAA-CCCTATGGCATTAGTATAAGTTTATAATTACC
*
14919818 CCATAAAGTTTCATTATTAAAATGAAATGTTATGTTTATAGTTTATACGAGCTCACTAAGCATTC
130 CCATAAAGTTTCATTATTAAAATGAAATGTTATGTTTAAAGTTTATACGAGCTCACTAAGCATTC
*
14919883 ATTGCTTACGTAGTTATTTTCCTTGACTTTACAAATTATC
195 ATTGCTTACGTAGTTATTTTCCTTGACTTAACAAATTATC
14919923 GGATGTTTGA
Statistics
Matches: 222, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
235 219 0.99
236 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.42
Consensus pattern (235 bp):
GAATTAAATGTTATGTTTATATATATATGGATGACTTATGGTCAAATATGTATAAGTTTAGGTAT
ATATGTGTTTTAGATGCACTCCTATATATTAACCCTATGGCATTAGTATAAGTTTATAATTACCC
CATAAAGTTTCATTATTAAAATGAAATGTTATGTTTAAAGTTTATACGAGCTCACTAAGCATTCA
TTGCTTACGTAGTTATTTTCCTTGACTTAACAAATTATCA
Found at i:14926337 original size:14 final size:15
Alignment explanation
Indices: 14926317--14926355 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14926307 ATTATTTTGA
14926317 AATTTTA-AA-TTAT
1 AATTTTATAATTTAT
14926330 ATATTTTATAATTTAT
1 A-ATTTTATAATTTAT
14926346 AATTTTATAA
1 AATTTTATAA
14926356 AACAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.04
14 6 0.26
15 11 0.48
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTTTATAATTTAT
Found at i:14938942 original size:30 final size:30
Alignment explanation
Indices: 14938908--14938976 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
14938898 GAATAAGTTT
** *
14938908 CTCACACAAGATGACAATATATTAGGATTG
1 CTCACACAAGATGACAATATAACAGAATTG
* * *
14938938 CTCACACAAGTTGACATTATAACATAATTG
1 CTCACACAAGATGACAATATAACAGAATTG
14938968 CTCACACAA
1 CTCACACAA
14938977 TCTAACATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.26
Consensus pattern (30 bp):
CTCACACAAGATGACAATATAACAGAATTG
Found at i:14942625 original size:44 final size:43
Alignment explanation
Indices: 14942515--14942641 Score: 116
Period size: 44 Copynumber: 2.9 Consensus size: 43
14942505 ATTTTGTACA
* * * **
14942515 ATGCCAACGTCCCAGACGTGGTCTTATATTTAATCACATATCG
1 ATGCCAATGTCCCAGAAGTGGTCTTACACGTAATCACATATCG
* * *
14942558 ATGCCACTATCCCAAACAG-GGTCTTACACGTAAGTCACA-AGTCG
1 ATGCCAATGTCCCAGA-AGTGGTCTTACACGTAA-TCACATA-TCG
*
14942602 ATGCCAATGTCCCAGATGTGGTCTTACACGATAA-CACATA
1 ATGCCAATGTCCCAGAAGTGGTCTTACACG-TAATCACATA
14942642 ACATAATCCT
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
43 29 0.44
44 34 0.52
45 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAGTGGTCTTACACGTAATCACATATCG
Found at i:14943538 original size:20 final size:20
Alignment explanation
Indices: 14943495--14943538 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14943485 AATGACAATT
* *
14943495 AATTTATCTTTATTTTTACT
1 AATTTATCTTTATTTTGACA
14943515 AATTTATCTTT-TATTTGACA
1 AATTTATCTTTAT-TTTGACA
14943535 AATT
1 AATT
14943539 ACCACATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (20 bp):
AATTTATCTTTATTTTGACA
Found at i:14954781 original size:15 final size:15
Alignment explanation
Indices: 14954761--14954791 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14954751 GTTAATTGTA
14954761 TTAATTCAATGAGAT
1 TTAATTCAATGAGAT
14954776 TTAATTCAATGAGAT
1 TTAATTCAATGAGAT
14954791 T
1 T
14954792 CGTTTGATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (15 bp):
TTAATTCAATGAGAT
Found at i:14961153 original size:30 final size:30
Alignment explanation
Indices: 14961117--14961178 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
14961107 GCTAGATAAC
14961117 GAACCTCTATAAAACACGAAGAAACAAACT
1 GAACCTCTATAAAACACGAAGAAACAAACT
*
14961147 GAACCTCTATAAAACACGAAGAAATAAACT
1 GAACCTCTATAAAACACGAAGAAACAAACT
14961177 GA
1 GA
14961179 GTAAGAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.53, C:0.21, G:0.11, T:0.15
Consensus pattern (30 bp):
GAACCTCTATAAAACACGAAGAAACAAACT
Found at i:14961714 original size:26 final size:23
Alignment explanation
Indices: 14961645--14961714 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 23
14961635 CCAGCTGAAG
*
14961645 AACGGTAAGCTC-TATCTAGTTGA
1 AACGGTAAGCTCATA-CTAGCTGA
* **
14961668 AACGGTCAGCTCATAAGAGCTGA
1 AACGGTAAGCTCATACTAGCTGA
14961691 TATATCGGTAAGCTCATACTAGCT
1 -A-A-CGGTAAGCTCATACTAGCT
14961715 ATGGTGAGTC
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 16 0.44
24 3 0.08
25 1 0.03
26 16 0.44
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (23 bp):
AACGGTAAGCTCATACTAGCTGA
Found at i:14966141 original size:22 final size:24
Alignment explanation
Indices: 14966098--14966143 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
14966088 TTGGGGTGTA
*
14966098 AAGGAGAGAAAATTTGTGGAAATT
1 AAGGAGAGAAAATGTGTGGAAATT
*
14966122 AAGGA-AG-AAATGTGTTGAAATT
1 AAGGAGAGAAAATGTGTGGAAATT
14966144 TGATTGGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 2 0.10
24 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (24 bp):
AAGGAGAGAAAATGTGTGGAAATT
Found at i:14971801 original size:76 final size:76
Alignment explanation
Indices: 14971708--14971861 Score: 290
Period size: 76 Copynumber: 2.0 Consensus size: 76
14971698 GAAGCTTTTT
*
14971708 TTTCGTTAAATCTTAGTATTGATTATGAAAAGATATAATATTCTTTTGTGATAGATGCAATAAAC
1 TTTCGTTAAATCCTAGTATTGATTATGAAAAGATATAATATTCTTTTGTGATAGATGCAATAAAC
14971773 CTTTAGATATC
66 CTTTAGATATC
*
14971784 TTTCGTTAAGTCCTAGTATTGATTATGAAAAGATATAATATTCTTTTGTGATAGATGCAATAAAC
1 TTTCGTTAAATCCTAGTATTGATTATGAAAAGATATAATATTCTTTTGTGATAGATGCAATAAAC
14971849 CTTTAGATATC
66 CTTTAGATATC
14971860 TT
1 TT
14971862 ATTAGTTTGG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (76 bp):
TTTCGTTAAATCCTAGTATTGATTATGAAAAGATATAATATTCTTTTGTGATAGATGCAATAAAC
CTTTAGATATC
Found at i:14978188 original size:9 final size:10
Alignment explanation
Indices: 14978153--14978208 Score: 73
Period size: 10 Copynumber: 5.7 Consensus size: 10
14978143 AATAATTTCT
14978153 CAAACAATGGA
1 CAAA-AATGGA
14978164 CAAAAATGGA
1 CAAAAATGGA
14978174 CAAAAATGGA
1 CAAAAATGGA
14978184 CAAAAAT---
1 CAAAAATGGA
14978191 CAAATAATGGA
1 CAAA-AATGGA
14978202 CAAAAAT
1 CAAAAAT
14978209 CCAAAAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
7 4 0.10
8 3 0.07
10 26 0.63
11 8 0.20
ACGTcount: A:0.61, C:0.12, G:0.14, T:0.12
Consensus pattern (10 bp):
CAAAAATGGA
Found at i:14978201 original size:18 final size:17
Alignment explanation
Indices: 14978152--14978216 Score: 76
Period size: 18 Copynumber: 3.5 Consensus size: 17
14978142 CAATAATTTC
14978152 TCAAACAATGGACAAAAA
1 TCAAA-AATGGACAAAAA
14978170 TGGACAAAAATGGACAAAAA
1 T---CAAAAATGGACAAAAA
14978190 TCAAATAATGGACAAAAA
1 TCAAA-AATGGACAAAAA
14978208 TCCAAAAAT
1 T-CAAAAAT
14978217 TATTCCCAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.10
18 17 0.40
19 4 0.10
20 13 0.31
21 4 0.10
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (17 bp):
TCAAAAATGGACAAAAA
Found at i:14979245 original size:15 final size:16
Alignment explanation
Indices: 14979227--14979262 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
14979217 TTTTTTTCTT
14979227 TTTTTAAAAAAAAT-A
1 TTTTTAAAAAAAATCA
14979242 TTTTTAAAAAAAATCA
1 TTTTTAAAAAAAATCA
14979258 TTTTT
1 TTTTT
14979263 TTCAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTTTAAAAAAAATCA
Found at i:14993528 original size:25 final size:25
Alignment explanation
Indices: 14993500--14993547 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14993490 ATATCATATT
14993500 GTCTACTTCTAATAGCACGTTTTGA
1 GTCTACTTCTAATAGCACGTTTTGA
*
14993525 GTCTGCTTCTAATAGCACGTTTT
1 GTCTACTTCTAATAGCACGTTTT
14993548 CGAATTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (25 bp):
GTCTACTTCTAATAGCACGTTTTGA
Found at i:14996831 original size:56 final size:50
Alignment explanation
Indices: 14996655--14996852 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 50
14996645 TTTCTTGTAC
* * * ** * *
14996655 TGCCAATGCCATATCCCAGATATGGTCTTACATGGTAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* **
14996705 TGCCTATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* *
14996755 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC-A-G
* * *
14996810 ATGCCAATGTCATGTCTCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14996853 TTACCCAAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 78 0.64
53 5 0.04
54 1 0.01
55 1 0.01
56 37 0.30
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:15005892 original size:37 final size:35
Alignment explanation
Indices: 15005813--15005893 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
15005803 ATCTAACATT
* * *
15005813 TTGTTAGTAAAATTATTAATTGTTAATTGTATTAA
1 TTGTTAGTAAAATTATCAATTATTAAATGTATTAA
15005848 TTGTTAGTAAAATTATCATATTATATCAAAT-TATTAA
1 TTGTTAGTAAAATTATCA-ATTAT-T-AAATGTATTAA
15005885 TTGTTAGTA
1 TTGTTAGTA
15005894 CCAGTCAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
35 17 0.43
36 4 0.10
37 16 0.40
38 3 0.08
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.49
Consensus pattern (35 bp):
TTGTTAGTAAAATTATCAATTATTAAATGTATTAA
Found at i:15005983 original size:112 final size:112
Alignment explanation
Indices: 15005786--15005992 Score: 360
Period size: 112 Copynumber: 1.8 Consensus size: 112
15005776 TTTGTATCAA
* *
15005786 TCAAAAGATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG
1 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
*
15005851 TTAGTAAAATTATCATATTATATCAAATTATTAATTGTTAGTACCAG
66 TTAGTAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAG
*
15005898 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTCAAATCATTAATTGTTAATTGTATTAATTG
1 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
* *
15005963 TTAGTAAATTTATCAAATTATATCATATTA
66 TTAGTAAAATTATCAAATTATATCAAATTA
15005993 GAGTTAGGTT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (112 bp):
TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
TTAGTAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAG
Found at i:15006069 original size:27 final size:27
Alignment explanation
Indices: 15006039--15006110 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 27
15006029 GGGTTTTGGT
15006039 GTTTTTAAGTTAAGGGTTACGATTAGG
1 GTTTTTAAGTTAAGGGTTACGATTAGG
*
15006066 GTTTTTAAGTTAA-----A-GGTTAGG
1 GTTTTTAAGTTAAGGGTTACGATTAGG
15006087 GTTTTTAAGTTAAGGGTTACGATT
1 GTTTTTAAGTTAAGGGTTACGATT
15006111 TTTAAGTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
21 19 0.51
22 1 0.03
26 1 0.03
27 16 0.43
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.43
Consensus pattern (27 bp):
GTTTTTAAGTTAAGGGTTACGATTAGG
Found at i:15006086 original size:21 final size:21
Alignment explanation
Indices: 15006061--15006622 Score: 637
Period size: 21 Copynumber: 26.4 Consensus size: 21
15006051 AGGGTTACGA
*
15006061 TTAGGGTTTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGG
15006082 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15006103 TTACGATTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15006124 TTTAGAGTTTTTAAGCTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
*
15006146 TTAGGGTTTTTAAGTTAATGG
1 TTAGGGTTTTTAAGTTAAGGG
15006167 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15006188 TTAGGGTTTTTTAAATTAAAGG
1 TTAGGG-TTTTTAAGTTAAGGG
*
15006210 TTAGGGTTTTTAAGTTAAGTG
1 TTAGGGTTTTTAAGTTAAGGG
*
15006231 TTAGGATTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
**
15006252 TTAGATTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15006273 TTTATGGTTTTTAAGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* *
15006295 TTAAGGTTTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTT-AAGGG
*
15006317 TTAAGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15006338 TTAGAG-TTTTAAGTTAAGGAT
1 TTAGGGTTTTTAAGTTAAGG-G
15006359 TTAGGG-TTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15006379 TTTAGGG-TTTTAAGTTAAAGGT
1 -TTAGGGTTTTTAAGTT-AAGGG
** *
15006401 TTAGAATTTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTT-AAGGG
15006423 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15006444 TTTAGGG-GTTTAAGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* **
15006465 TTAGGGTTTTTAAATTAAGTT
1 TTAGGGTTTTTAAGTTAAGGG
15006486 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* * *
15006507 TTTATGATTTTTAGGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* * *
15006529 TTAAGTTTTTTAGGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15006550 TTTAGGGTTTTTAAATTAAGGA
1 -TTAGGGTTTTTAAGTTAAGGG
* *
15006572 TTAGGTTTTTTAAGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAG-GG
** *
15006594 TTAGGAATTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGG
15006615 TTAGGGTT
1 TTAGGGTT
15006623 AGAGTTAGGG
Statistics
Matches: 464, Mismatches: 64, Indels: 26
0.84 0.12 0.05
Matches are distributed among these distances:
20 19 0.04
21 281 0.61
22 164 0.35
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:15006135 original size:43 final size:43
Alignment explanation
Indices: 15006061--15006622 Score: 642
Period size: 43 Copynumber: 13.2 Consensus size: 43
15006051 AGGGTTACGA
*
15006061 TTAGGGTTTTTAAGTTAAAGG-TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * * *
15006103 TTACGATTTTTAAGTTAAGGGTTTAGAGTTTTTAAGCTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
*
15006146 TTAGGGTTTTTAAGTTAATGG-TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * *
15006188 TTAGGGTTTTTTAAATTAAAGG-TTAGGGTTTTTAAGTTAAGTG
1 TTAGGG-TTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* **
15006231 TTAGGATTTTTAAGTTAAGGG-TTAGATTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * *
15006273 TTTATGGTTTTTAAGTTAAGGG-TTAAGGTTTTTAAGTTAAAGGT
1 -TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTT-AAGGG
* * *
15006317 TTAAGGTTTTTAAGTTAAGGG-TTAGAG-TTTTAAGTTAAGGAT
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGG-G
*
15006359 TTAGGG-TTTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTT-AAGGG
** *
15006401 TTAGAATTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * **
15006444 TTTAGGG-GTTTAAGTTAAGGG-TTAGGGTTTTTAAATTAAGTT
1 -TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * *
15006486 TTAGGGTTTTTAAGTTAAGGGTTTATGATTTTTAGGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * * * *
15006529 TTAAGTTTTTTAGGTTAAGGGTTTAGGGTTTTTAAATTAAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
* * ** *
15006572 TTAGGTTTTTTAAGTTAAGAGTTTAGGAATTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
15006615 TTAGGGTT
1 TTAGGGTT
15006623 AGAGTTAGGG
Statistics
Matches: 443, Mismatches: 65, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
41 24 0.05
42 139 0.31
43 263 0.59
44 17 0.04
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (43 bp):
TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG
Found at i:15006148 original size:64 final size:64
Alignment explanation
Indices: 15006061--15006622 Score: 631
Period size: 64 Copynumber: 8.8 Consensus size: 64
15006051 AGGGTTACGA
* * * *
15006061 TTAGGGTTTTTAAGTTAAAGGTTAGGGTTTTTAAGTTAAGGGTTACGATTTTTAAGTTAAGGGT
1 TTAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* *
15006125 TTAGAGTTTTTAAGCTAAGGGTTAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAAGTTAAGGG-
1 TTAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* * * * *
15006188 TTAGGGTTTTTTAAATTAAAGGTTAGGGTTTTTAAGTTAAGTGTTAGGATTTTTAAGTTAAGGG-
1 TTAGAG-TTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* * * *
15006252 TTAGATTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAAGGT
1 TTAGAGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* *
15006317 TTA-AGGTTTTTAAGTTAAGGGTTAGAG-TTTTAAGTTAAGGATTTAGGG-TTTTAAGTTAAGGG
1 TTAGA-GTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGG
15006379 T
64 T
* * ** *
15006380 TTAG-GGTTTTAAGTTAAAGGTTTAGAATTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGG
1 TTAGAGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGG
15006444 T
64 T
** * **
15006445 TTAG-GGGTTTAAGTTAAGGGTTAGGGTTTTTAAATTAAGTTTTAGGGTTTTTAAGTTAAGGGT
1 TTAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* * * * *
15006508 TTATGA-TTTTTAGGTTAAGGGTTAAGTTTTTTAGGTTAAGGGTTTAGGGTTTTTAAATTAA-GG
1 TTA-GAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGG
*
15006571 A
64 T
* ** *
15006572 TTAG-GTTTTTTAAGTTAAGAGTTTAGGAATTTTAAGTTAAAGGTTAGGGTT
1 TTAGAG-TTTTTAAGTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
15006623 AGAGTTAGGG
Statistics
Matches: 427, Mismatches: 55, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
62 10 0.02
63 87 0.20
64 245 0.57
65 85 0.20
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (64 bp):
TTAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
Found at i:15007888 original size:37 final size:35
Alignment explanation
Indices: 15007809--15007889 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
15007799 ATCTAACATT
* * *
15007809 TTGTTAGTAAAATTATTAATTGTTAATTGTATTAA
1 TTGTTAGTAAAATTATCAATTATTAAATGTATTAA
15007844 TTGTTAGTAAAATTATCATATTATATCAAAT-TATTAA
1 TTGTTAGTAAAATTATCA-ATTAT-T-AAATGTATTAA
15007881 TTGTTAGTA
1 TTGTTAGTA
15007890 CCAGTCAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
35 17 0.43
36 4 0.10
37 16 0.40
38 3 0.08
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.49
Consensus pattern (35 bp):
TTGTTAGTAAAATTATCAATTATTAAATGTATTAA
Found at i:15007979 original size:112 final size:112
Alignment explanation
Indices: 15007782--15007988 Score: 360
Period size: 112 Copynumber: 1.8 Consensus size: 112
15007772 TTTGTATCAA
* *
15007782 TCAAAAGATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTG
1 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
*
15007847 TTAGTAAAATTATCATATTATATCAAATTATTAATTGTTAGTACCAG
66 TTAGTAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAG
*
15007894 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTCAAATCATTAATTGTTAATTGTATTAATTG
1 TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
* *
15007959 TTAGTAAATTTATCAAATTATATCATATTA
66 TTAGTAAAATTATCAAATTATATCAAATTA
15007989 GAGTTAGGTT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (112 bp):
TCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATCATTAATTGTTAATTGTATTAATTG
TTAGTAAAATTATCAAATTATATCAAATTATTAATTGTTAGTACCAG
Found at i:15008065 original size:27 final size:27
Alignment explanation
Indices: 15008035--15008106 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 27
15008025 GGGTTTTGGT
15008035 GTTTTTAAGTTAAGGGTTACGATTAGG
1 GTTTTTAAGTTAAGGGTTACGATTAGG
*
15008062 GTTTTTAAGTTAA-----A-GGTTAGG
1 GTTTTTAAGTTAAGGGTTACGATTAGG
15008083 GTTTTTAAGTTAAGGGTTACGATT
1 GTTTTTAAGTTAAGGGTTACGATT
15008107 TTTAAGTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
21 19 0.51
22 1 0.03
26 1 0.03
27 16 0.43
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.43
Consensus pattern (27 bp):
GTTTTTAAGTTAAGGGTTACGATTAGG
Found at i:15008082 original size:21 final size:21
Alignment explanation
Indices: 15008057--15008660 Score: 712
Period size: 21 Copynumber: 28.4 Consensus size: 21
15008047 AGGGTTACGA
*
15008057 TTAGGGTTTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGG
15008078 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15008099 TTACGATTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15008120 TTTAGAGTTTTTAAGCTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
*
15008142 TTAGGGTTTTTAAGTTAATGG
1 TTAGGGTTTTTAAGTTAAGGG
15008163 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15008184 TTAGGGTTTTTAAGTTAATGG
1 TTAGGGTTTTTAAGTTAAGGG
15008205 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15008226 TTAGGGTTTTTTAAATTAAAGG
1 TTAGGG-TTTTTAAGTTAAGGG
*
15008248 TTAGGGTTTTTAAGTTAAGTG
1 TTAGGGTTTTTAAGTTAAGGG
*
15008269 TTAGGATTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
**
15008290 TTAGATTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15008311 TTTATGGTTTTTAAGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* *
15008333 TTAAGGTTTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTT-AAGGG
*
15008355 TTAAGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15008376 TTAGAG-TTTTAAGTTAAGGAT
1 TTAGGGTTTTTAAGTTAAGG-G
15008397 TTAGGG-TTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15008417 TTTAGGG-TTTTAAGTTAAAGGT
1 -TTAGGGTTTTTAAGTT-AAGGG
** *
15008439 TTAGAATTTTTAAGTTAAAGGT
1 TTAGGGTTTTTAAGTT-AAGGG
15008461 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
15008482 TTTAGGG-GTTTAAGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* **
15008503 TTAGGGTTTTTAAATTAAGTT
1 TTAGGGTTTTTAAGTTAAGGG
15008524 TTAGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* * *
15008545 TTTATGATTTTTAGGTTAAGGG
1 -TTAGGGTTTTTAAGTTAAGGG
* * *
15008567 TTAAGTTTTTTAGGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
15008588 TTTAGGGTTTTTAAATTAAGGA
1 -TTAGGGTTTTTAAGTTAAGGG
* *
15008610 TTAGGTTTTTTAAGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAG-GG
** *
15008632 TTAGGAATTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGG
15008653 TTAGGGTT
1 TTAGGGTT
15008661 AGAGTTAGGG
Statistics
Matches: 504, Mismatches: 66, Indels: 26
0.85 0.11 0.04
Matches are distributed among these distances:
20 19 0.04
21 321 0.64
22 164 0.33
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.45
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:15008159 original size:85 final size:85
Alignment explanation
Indices: 15008057--15008660 Score: 733
Period size: 85 Copynumber: 7.1 Consensus size: 85
15008047 AGGGTTACGA
* *
15008057 TTAGGGTTTTTAAGTTAAAGGTTAGGGTTTTTAAGTTAAGGGTTACGATTTTTAAGTTAAGGGTT
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGTT
*
15008122 TAGAGTTTTTAAGCTAAGGG
66 TAGAGTTTTTAAGTTAAGGG
* * *
15008142 TTAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAATGG-T
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGTT
*
15008206 TAGGGTTTTTAAGTTAAGGG
66 TAGAGTTTTTAAGTTAAGGG
* * *
15008226 TTAGGGTTTTTTAAATTAAAGGTTAGGGTTTTTAAGTTAAGTGTTAGGATTTTTAAGTTAAGGG-
1 TTAGGG-TTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGT
*
15008290 TTAGATTTTTTAAGTTAAGGG
65 TTAGAGTTTTTAAGTTAAGGG
* * *
15008311 TTTATGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAAGGTTTAAGG-TTTTTAAGTTAAGG
1 -TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTT-AAGGGTT-AGGATTTTTAAGTTAAGG
*
15008375 G-TTAGAG-TTTTAAGTTAAGGAT
63 GTTTAGAGTTTTTAAGTTAAGG-G
* * *
15008397 TTAGGG-TTTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAAGGTTTAGAATTTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTT-AAGGGTTAGGATTTTTAAGTTAAGGG
*
15008460 TTTAGGGTTTTTAAGTTAAGGG
64 TTTAGAGTTTTTAAGTTAAGGG
* * ** *
15008482 TTTAGGG-GTTTAAGTTAAGGGTTAGGGTTTTTAAATTAAGTTTTAGGGTTTTTAAGTTAAGGGT
1 -TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGT
*
15008546 TTATGA-TTTTTAGGTTAAGGG
65 TTA-GAGTTTTTAAGTTAAGGG
* * * * * * *
15008567 TTAAGTTTTTTAGGTTAAGGGTTTAGGGTTTTTAAATTAAGGATTAGGTTTTTTAAGTTAAGAGT
1 TTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGT
* *
15008632 TTAG-GAATTTTAAGTTAAAGG
65 TTAGAG-TTTTTAAGTTAAGGG
15008653 TTAGGGTT
1 TTAGGGTT
15008661 AGAGTTAGGG
Statistics
Matches: 455, Mismatches: 48, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
83 2 0.00
84 74 0.16
85 245 0.54
86 131 0.29
87 3 0.01
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.45
Consensus pattern (85 bp):
TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGATTTTTAAGTTAAGGGTT
TAGAGTTTTTAAGTTAAGGG
Found at i:15008189 original size:106 final size:106
Alignment explanation
Indices: 15008057--15008654 Score: 724
Period size: 106 Copynumber: 5.6 Consensus size: 106
15008047 AGGGTTACGA
* * *
15008057 TTAGGGTTTTTAAGTTAAAGGTTAGGGTTTTTAAGTTAAGGGTTACGATTTTTAAGTTAAGGGTT
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
* *
15008122 TAGAGTTTTTAAGCTAAGGGTTAGGGTTTTTAAGTTAATGG
66 TAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
*
15008163 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAAGTTAAGGG-T
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
* * * *
15008227 TAGGGTTTTTTAAATTAAAGGTTAGGGTTTTTAAGTTAAGTG
66 TAGAG-TTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
* ** *
15008269 TTAGGATTTTTAAGTTAAGGGTTAGATTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGT
* * *
15008334 TAAG-GTTTTTAAGTTAAAGGTTTAAGGTTTTTAAGTTAAGGG
65 TTAGAGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGG
* * *
15008376 TTAGAG-TTTTAAGTTAAGGATTTAGGG-TTTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAAGG
1 TTAGGGTTTTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGG
* *
15008438 TTTAGAATTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGG
64 TTTAGAGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGG
* * **
15008482 TTTAGGG-GTTTAAGTTAAGGGTTAGGGTTTTTAAATTAAGTTTTAGGGTTTTTAAGTTAAGGGT
1 -TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGT
* * * *
15008546 TTATGA-TTTTTAGGTTAAGGGTTAAGTTTTTTAGGTTAAGGG
65 TTA-GAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
* * * * ** *
15008588 TTTAGGGTTTTTAAATTAAGGATTAGGTTTTTTAAGTTAAGAGTTTAGGAATTTTAAGTTAAAGG
1 -TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAG-GGTTAGGGTTTTTAAGTTAAGGG
15008653 TT
64 TT
15008655 AGGGTTAGAG
Statistics
Matches: 428, Mismatches: 52, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
105 22 0.05
106 247 0.58
107 133 0.31
108 26 0.06
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (106 bp):
TTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT
TAGAGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG
Found at i:15009720 original size:7 final size:7
Alignment explanation
Indices: 15009710--15009735 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15009700 TTATATACAT
15009710 AATACTA
1 AATACTA
15009717 AATACTA
1 AATACTA
15009724 AATACTA
1 AATACTA
15009731 AATAC
1 AATAC
15009736 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:15014527 original size:120 final size:120
Alignment explanation
Indices: 15014389--15014681 Score: 500
Period size: 120 Copynumber: 2.4 Consensus size: 120
15014379 AATTATTTTA
* * * *
15014389 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTATATT
*
15014452 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
15014509 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
15014574 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
15014629 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
15014682 TAAATATGAT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 4 0.02
120 159 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:15014549 original size:15 final size:15
Alignment explanation
Indices: 15014514--15014555 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15014504 TTAAGAATTT
*
15014514 TATTAAATTAT-ATA
1 TATTTAATTATAATA
15014528 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
15014542 TATTTAATAATAAT
1 TATTTAATTATAAT
15014556 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:15014664 original size:16 final size:16
Alignment explanation
Indices: 15014643--15014684 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
15014633 TTATTAAATT
*
15014643 ATATATTTTAATTATA
1 ATATATTTTAATAATA
15014659 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
15014674 AT-TATGTTTAA
1 ATATAT-TTTAA
15014685 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:15014669 original size:15 final size:15
Alignment explanation
Indices: 15014634--15014675 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15014624 TTAAGAATTT
*
15014634 TATTAAATTAT-ATA
1 TATTTAATTATAATA
15014648 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
15014662 TATTTAATAATAAT
1 TATTTAATTATAAT
15014676 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:15014825 original size:157 final size:157
Alignment explanation
Indices: 15014618--15014934 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
15014608 ATAAGAATAT
*
15014618 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
15014683 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
15014748 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
15014775 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
15014839 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* *
15014904 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
15014932 TAA
1 TAA
15014935 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:15015051 original size:44 final size:45
Alignment explanation
Indices: 15014986--15015076 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
15014976 ACCTCTATTC
* * *
15014986 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
15015030 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
15015075 CA
1 CA
15015077 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:15015091 original size:17 final size:16
Alignment explanation
Indices: 15015057--15015111 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
15015047 GATTAGCTAT
15015057 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15015073 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
15015090 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
15015106 TACACC
1 TACACC
15015112 CTTATACTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 22 0.58
17 16 0.42
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:15015418 original size:17 final size:18
Alignment explanation
Indices: 15015381--15015426 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
15015371 CGATTTCTGC
*
15015381 TTCTTTTATTCTCGTACGT
1 TTCTTTTCTTCTCG-ACGT
15015400 TTCTTTTCTTCTC-ACGT
1 TTCTTTTCTTCTCGACGT
*
15015417 TTTTTTTCTT
1 TTCTTTTCTT
15015427 TTCTCCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.52
19 12 0.48
ACGTcount: A:0.07, C:0.22, G:0.07, T:0.65
Consensus pattern (18 bp):
TTCTTTTCTTCTCGACGT
Found at i:15015884 original size:36 final size:36
Alignment explanation
Indices: 15015836--15015906 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
15015826 AGAATTTAAT
*
15015836 TTCCACCTGGATGAATAGGCGAGCATTCCAGTCCTA
1 TTCCACCAGGATGAATAGGCGAGCATTCCAGTCCTA
15015872 TTCCACCAGGATGAATAGGCGAGCATTCCAGTCCT
1 TTCCACCAGGATGAATAGGCGAGCATTCCAGTCCT
15015907 GTTGACCAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (36 bp):
TTCCACCAGGATGAATAGGCGAGCATTCCAGTCCTA
Found at i:15016013 original size:13 final size:13
Alignment explanation
Indices: 15015995--15016022 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15015985 TGAATTCGCT
15015995 GATTGTGGATTTA
1 GATTGTGGATTTA
15016008 GATTGTGGATTTA
1 GATTGTGGATTTA
15016021 GA
1 GA
15016023 ATCTCCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.32, T:0.43
Consensus pattern (13 bp):
GATTGTGGATTTA
Found at i:15019009 original size:56 final size:57
Alignment explanation
Indices: 15018898--15019030 Score: 146
Period size: 56 Copynumber: 2.3 Consensus size: 57
15018888 TATATTATTA
* * *
15018898 TATATTATGATTTTAGTAAATTAATATAAGAATAATTATATTAAGAAATTTATTAAAT
1 TATA-TATTATTTTATTAAATTAATATAAGAATAATTATATTAAGAAATTGATTAAAT
* * *
15018956 TATATATT-TTTTATTAAATTATATTTAATAATAATTATGTT-A-AAATATGATTAAAT
1 TATATATTATTTTATTAAATTA-ATATAAGAATAATTATATTAAGAAAT-TGATTAAAT
*
15019012 TATTTATTATTTATATTAA
1 TATATATTATTT-TATTAA
15019031 TAATCTTATT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
55 4 0.06
56 28 0.44
57 22 0.34
58 10 0.16
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (57 bp):
TATATATTATTTTATTAAATTAATATAAGAATAATTATATTAAGAAATTGATTAAAT
Found at i:15019053 original size:3 final size:3
Alignment explanation
Indices: 15019047--15019071 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15019037 TATTAAAATT
15019047 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
15019072 CATCATCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:15019241 original size:16 final size:16
Alignment explanation
Indices: 15019223--15019284 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
15019213 GTATTACGCC
15019223 TCTATTCCATTACAGC-
1 TCTATTCCATTACA-CT
15019239 TCTATTCCATTACACT
1 TCTATTCCATTACACT
*
15019255 TCTATTCCATTATACT
1 TCTATTCCATTACACT
15019271 TCTATTCCATTACA
1 TCTATTCCATTACA
15019285 GCGAACCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
15 1 0.02
16 42 0.98
ACGTcount: A:0.26, C:0.29, G:0.02, T:0.44
Consensus pattern (16 bp):
TCTATTCCATTACACT
Found at i:15049785 original size:6 final size:6
Alignment explanation
Indices: 15049774--15049812 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
15049764 TAACATGCTT
15049774 TCAATA TCAATA TCAATA TCAATA TCAATA TCAATA TCA
1 TCAATA TCAATA TCAATA TCAATA TCAATA TCAATA TCA
15049813 GATCGATGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (6 bp):
TCAATA
Found at i:15051271 original size:26 final size:28
Alignment explanation
Indices: 15051222--15051274 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
15051212 CAATTTATTG
15051222 TTAATATTTTAATATATGAAAAATAAAAT
1 TTAATATTTTAATATA-GAAAAATAAAAT
*
15051251 TTAA-ATTTTAATATA-ACAAATAAA
1 TTAATATTTTAATATAGAAAAATAAA
15051275 TACCATGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
28 11 0.48
29 4 0.17
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (28 bp):
TTAATATTTTAATATAGAAAAATAAAAT
Found at i:15054171 original size:20 final size:20
Alignment explanation
Indices: 15054141--15054178 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15054131 TGAAAATGTT
15054141 TAAATAATTTATATTATAAAA
1 TAAATAATTTAT-TTATAAAA
15054162 TAAA-AATTTATTTATAA
1 TAAATAATTTATTTATAA
15054179 TGTAGTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATAATTTATTTATAAAA
Found at i:15058212 original size:49 final size:49
Alignment explanation
Indices: 15058131--15058237 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 49
15058121 GTGGCATGAA
* *
15058131 ACTTGAACCCGTGACCACATAACCACTGTCAACTAAGAGCTCAAGTTAT
1 ACTTGAACCCGTGACCACATAACCACTATCAACTAAGAGCCCAAGTTAT
*** * ** *
15058180 ACTTGAACCCGTGATTGCATAATCACTATCAACTGGGAGCCCTAGTTAT
1 ACTTGAACCCGTGACCACATAACCACTATCAACTAAGAGCCCAAGTTAT
*
15058229 AGTTGAACC
1 ACTTGAACC
15058238 TATGGCTGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (49 bp):
ACTTGAACCCGTGACCACATAACCACTATCAACTAAGAGCCCAAGTTAT
Found at i:15060631 original size:17 final size:17
Alignment explanation
Indices: 15060611--15060643 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15060601 ATAACATAGG
*
15060611 TTCGCACATGGTATAAA
1 TTCGCACATAGTATAAA
15060628 TTCGCACATAGTATAA
1 TTCGCACATAGTATAA
15060644 CAAGGTTCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (17 bp):
TTCGCACATAGTATAAA
Done.