Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 50 of 141
Found at i:15060665 original size:24 final size:24
Alignment explanation
Indices: 15060636--15060682 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
15060626 AATTCGCACA
15060636 TAGTATAACAAGGTTCGCATGTAT
1 TAGTATAACAAGGTTCGCATGTAT
*
15060660 TAGTATAACAGGGTTCGCATGTA
1 TAGTATAACAAGGTTCGCATGTA
15060683 GCAAAACAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (24 bp):
TAGTATAACAAGGTTCGCATGTAT
Found at i:15064523 original size:43 final size:43
Alignment explanation
Indices: 15064476--15064564 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
15064466 CAAATCTCCC
15064476 ATTAGAGTCTAACAATTTACTAGTCCTTTCAATTTAATCCTGG
1 ATTAGAGTCTAACAATTTACTAGTCCTTTCAATTTAATCCTGG
* *
15064519 ATTAGAGTCTGACAATTTACTAGTCTTTTCAATTTAATCCTGG
1 ATTAGAGTCTAACAATTTACTAGTCCTTTCAATTTAATCCTGG
15064562 ATT
1 ATT
15064565 TTCCAAATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (43 bp):
ATTAGAGTCTAACAATTTACTAGTCCTTTCAATTTAATCCTGG
Found at i:15068716 original size:12 final size:12
Alignment explanation
Indices: 15068694--15068730 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
15068684 TTTTCCTTTT
15068694 TCCCTATTCCTCC
1 TCCC-ATTCCTCC
15068707 TCCCATTCCTCC
1 TCCCATTCCTCC
*
15068719 GCCCATTCCTCC
1 TCCCATTCCTCC
15068731 ATTCACTGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.08, C:0.57, G:0.03, T:0.32
Consensus pattern (12 bp):
TCCCATTCCTCC
Found at i:15069288 original size:19 final size:20
Alignment explanation
Indices: 15069264--15069311 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
15069254 AAAGCCTTTT
15069264 TATCGATACTCTG-AAAAAG-
1 TATCGATACT-TGTAAAAAGA
* *
15069283 TATCGATCCTTGTAAATAGA
1 TATCGATACTTGTAAAAAGA
15069303 TATCGATAC
1 TATCGATAC
15069312 CTATTATAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 14 0.58
20 8 0.33
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (20 bp):
TATCGATACTTGTAAAAAGA
Found at i:15073151 original size:6 final size:6
Alignment explanation
Indices: 15073140--15073211 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
15073130 TGGCTCTACA
* * * * *
15073140 TCATCT TCATCT TCATCT TCATCT TCACCT CCAAT-T CCACCT CCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TC-ATCT TCATCT TCATCT
* * *
15073188 TGATCT TGATCT TGATCT TCATCT
1 TCATCT TCATCT TCATCT TCATCT
15073212 CGTTCTTCTG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
5 1 0.02
6 54 0.96
7 1 0.02
ACGTcount: A:0.18, C:0.35, G:0.04, T:0.43
Consensus pattern (6 bp):
TCATCT
Found at i:15075125 original size:17 final size:16
Alignment explanation
Indices: 15075101--15075139 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
15075091 AAAATTTTAA
15075101 AATTAATAATGT-TATC
1 AATTAATAAT-TATATC
15075117 AACTTAATAATTATATC
1 AA-TTAATAATTATATC
15075134 AATTAA
1 AATTAA
15075140 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (16 bp):
AATTAATAATTATATC
Found at i:15075944 original size:31 final size:31
Alignment explanation
Indices: 15075867--15075944 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
15075857 AAAATAAAAA
15075867 TTTTTAAT-AAAAAAGATTAATTTACTCTTT
1 TTTTTAATGAAAAAAGATTAATTTACTCTTT
** * *
15075897 AATTTAATGTACAAAGATTAATTTA-T-TTAT
1 TTTTTAATGAAAAAAGATTAATTTACTCTT-T
15075927 TTTTTAAATGAAAAAAGA
1 TTTTT-AATGAAAAAAGA
15075945 AAAAGAAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
29 2 0.05
30 11 0.30
31 24 0.65
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (31 bp):
TTTTTAATGAAAAAAGATTAATTTACTCTTT
Found at i:15078767 original size:18 final size:18
Alignment explanation
Indices: 15078744--15078778 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15078734 GTGTCTTCCT
*
15078744 AAAAGAAGGAAAGAGAGA
1 AAAAGAAGGAAAAAGAGA
*
15078762 AAAAGAATGAAAAAGAG
1 AAAAGAAGGAAAAAGAG
15078779 CTGAATTCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.03
Consensus pattern (18 bp):
AAAAGAAGGAAAAAGAGA
Found at i:15082527 original size:35 final size:35
Alignment explanation
Indices: 15082481--15082551 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
15082471 AGAAACTATG
15082481 TTAAAATTTTGTTCTTGAAATCTAATTTAAACATC
1 TTAAAATTTTGTTCTTGAAATCTAATTTAAACATC
*
15082516 TTAAATTTTTGTTCTTGAAATCTAATTTAAACATC
1 TTAAAATTTTGTTCTTGAAATCTAATTTAAACATC
15082551 T
1 T
15082552 GTTGCAGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (35 bp):
TTAAAATTTTGTTCTTGAAATCTAATTTAAACATC
Found at i:15084098 original size:17 final size:17
Alignment explanation
Indices: 15084076--15084111 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
15084066 CGGAGCGTAA
15084076 TAGAGACCTAAGAGAGC
1 TAGAGACCTAAGAGAGC
15084093 TAGAGACCTAAGAGAGC
1 TAGAGACCTAAGAGAGC
15084110 TA
1 TA
15084112 TGGCTTCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.14
Consensus pattern (17 bp):
TAGAGACCTAAGAGAGC
Found at i:15089130 original size:17 final size:17
Alignment explanation
Indices: 15089108--15089141 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15089098 TGAATTCTTT
15089108 GCAGTCGATTCCCTCCA
1 GCAGTCGATTCCCTCCA
15089125 GCAGTCGATTCCCTCCA
1 GCAGTCGATTCCCTCCA
15089142 AGAATTGCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.18, T:0.24
Consensus pattern (17 bp):
GCAGTCGATTCCCTCCA
Found at i:15096796 original size:59 final size:59
Alignment explanation
Indices: 15096704--15096815 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
15096694 TCTATTTTTT
*
15096704 TTTTTTGTCCTAATTATACTCTCACAACTATCAAGTGCCATGGATCTAATTTTATCAAA
1 TTTTTTCTCCTAATTATACTCTCACAACTATCAAGTGCCATGGATCTAATTTTATCAAA
* **
15096763 TTTTTTCTCCTAATTTTACTCTCATGACTATCAAGTGCCATGGATCTAATTTT
1 TTTTTTCTCCTAATTATACTCTCACAACTATCAAGTGCCATGGATCTAATTTT
15096816 TATTATAGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.44
Consensus pattern (59 bp):
TTTTTTCTCCTAATTATACTCTCACAACTATCAAGTGCCATGGATCTAATTTTATCAAA
Found at i:15100312 original size:6 final size:6
Alignment explanation
Indices: 15100279--15100308 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
15100269 AGAATTAAAA
*
15100279 ATTTTC ATTTTC ATTTTC ATTTTC CTTTTC
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
15100309 CTTTATGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTTC
Found at i:15110547 original size:74 final size:75
Alignment explanation
Indices: 15110396--15110548 Score: 193
Period size: 74 Copynumber: 2.1 Consensus size: 75
15110386 GGATCTATAA
* * ** * *
15110396 TATGCAAATATACATGTATATGTTCTTGTATTGAATTTAGGTATGCCATTTATACAAGTTTATAT
1 TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATAG
15110461 GAGGTTCGAT
66 GAGGTTCGAT
* * * *
15110471 TATGCAAATATGCATGTATATGTTC-TGTAATGAGTTTAAGTATGAAATTTATATATGTATA-AG
1 TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATA-
15110534 GGAGGTTCGAT
65 GGAGGTTCGAT
15110545 TATG
1 TATG
15110549 TATGTATATT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
73 1 0.01
74 42 0.63
75 24 0.36
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (75 bp):
TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATAG
GAGGTTCGAT
Found at i:15110667 original size:41 final size:41
Alignment explanation
Indices: 15110622--15110772 Score: 257
Period size: 41 Copynumber: 3.7 Consensus size: 41
15110612 TTATTGCCAA
*
15110622 TGAAACATTTTAGACTTTAAGTCTAGCAGGCTTGATGCCGG
1 TGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGATGCCGG
* *
15110663 TGAAACATTTCAGACTTTACGTCTAGCAGGCTTGATGCCAG
1 TGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGATGCCGG
*
15110704 TGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGACGCCGG
1 TGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGATGCCGG
*
15110745 TGAAACATTTCAGACTTTATGTCTAGCA
1 TGAAACATTTCAGACTTTAAGTCTAGCA
15110773 AGCTAAGTGC
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
TGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGATGCCGG
Found at i:15110826 original size:82 final size:81
Alignment explanation
Indices: 15110616--15110830 Score: 263
Period size: 82 Copynumber: 2.6 Consensus size: 81
15110606 TCAGGTTTAT
* *
15110616 TGCCAATGAAACATTTTAGACTTTAAGTCTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTT
1 TGCCAGTGAAACA-ATTAGACTTTAAGTCTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTT
* *
15110681 ACGTCTAGCAGGCTTGA
65 ACGTCTAGCAAGCTAGA
* *
15110698 TGCCAGTGAAACATTTCAGACTTTAAGTCTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTT
1 TGCCAGTGAAACAATT-AGACTTTAAGTCTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTT
*
15110763 ATGTCTAGCAAGCTA-A
65 ACGTCTAGCAAGCTAGA
*** * *
15110779 GTGCCAGTGTATTGAATTAGGCTTTAAGTCTAGCAGGTTTTG-TGCCGGTGAA
1 -TGCCAGTG-AAACAATTAGACTTTAAGTCTAGCAGG-CTTGATGCCGGTGAA
15110831 TTTGTTCAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
81 4 0.03
82 106 0.91
83 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (81 bp):
TGCCAGTGAAACAATTAGACTTTAAGTCTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTA
CGTCTAGCAAGCTAGA
Found at i:15111767 original size:23 final size:23
Alignment explanation
Indices: 15111739--15111788 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
15111729 TCTTTGTTTA
*
15111739 TTAAAAATGGTTAGAAGAGAAGT
1 TTAAAAATAGTTAGAAGAGAAGT
15111762 TTAAAAATAGTTAGAAGAGAAGT
1 TTAAAAATAGTTAGAAGAGAAGT
15111785 TTAA
1 TTAA
15111789 CATTTTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (23 bp):
TTAAAAATAGTTAGAAGAGAAGT
Found at i:15121941 original size:3 final size:3
Alignment explanation
Indices: 15121935--15121977 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
15121925 AATAATAACG
*
15121935 ACA ACA ACA ACG ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
15121978 TAAAGACGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.65, C:0.33, G:0.02, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:15132246 original size:17 final size:17
Alignment explanation
Indices: 15132224--15132259 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
15132214 CGATTGCATG
15132224 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
15132241 TTTCTATTGCTGTTTAT
1 TTTCTATTGCTGTTTAT
15132258 TT
1 TT
15132260 CCCTTTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTCTATTGCTGTTTAT
Found at i:15132650 original size:32 final size:34
Alignment explanation
Indices: 15132587--15132650 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
15132577 TCTAATAATT
* *
15132587 TCACTATTATAAAACTATTTTCCTTAAAAGAATG
1 TCACTATTATAAAACCATTCTCCTTAAAAGAATG
15132621 TCAC-ATTATAAAACCATTCT-CTTAAAAGAA
1 TCACTATTATAAAACCATTCTCCTTAAAAGAA
15132651 AATCGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 10 0.36
33 14 0.50
34 4 0.14
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (34 bp):
TCACTATTATAAAACCATTCTCCTTAAAAGAATG
Found at i:15133543 original size:22 final size:21
Alignment explanation
Indices: 15133518--15133563 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
15133508 AAATTGTTGC
* *
15133518 ATTTGTTTTGATATTGGTCTTG
1 ATTTGTTCTGAAATT-GTCTTG
*
15133540 ATTTGTTCTGAAATTGTTTTG
1 ATTTGTTCTGAAATTGTCTTG
15133561 ATT
1 ATT
15133564 GTCTGCTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.17, C:0.04, G:0.20, T:0.59
Consensus pattern (21 bp):
ATTTGTTCTGAAATTGTCTTG
Found at i:15133577 original size:23 final size:23
Alignment explanation
Indices: 15133549--15133632 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
15133539 GATTTGTTCT
15133549 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
* * *
15133572 GAAATTGGTATGATTGGCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
15133595 GAAATTGTTTTGATTGTCTGCTG
1 GAAATTGTTTTGATTGTCTGCTG
*
15133618 GAAATTGTGTTGATT
1 GAAATTGTTTTGATT
15133633 TGTTTATGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.20, C:0.07, G:0.29, T:0.44
Consensus pattern (23 bp):
GAAATTGTTTTGATTGTCTGCTG
Found at i:15138122 original size:92 final size:91
Alignment explanation
Indices: 15137965--15138173 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
15137955 TTGATTTTAG
* * *
15137965 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
15138030 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
15138057 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
15138121 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
15138149 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
15138174 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:15138136 original size:24 final size:25
Alignment explanation
Indices: 15138101--15138148 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
15138091 TTATGAAATT
15138101 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
15138125 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
15138149 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:15138338 original size:18 final size:17
Alignment explanation
Indices: 15138310--15138344 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15138300 ATTATTAAGA
*
15138310 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15138327 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15138345 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15138594 original size:45 final size:44
Alignment explanation
Indices: 15138510--15138597 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
15138500 ACCTCTATTC
*
15138510 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCCATTCCATTA
*** *
15138554 CATTCAACCAAACAGTTGATTTGCTATTACACCTCCATTCCATT
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCCATTCCATT
15138598 CTATTTTGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCCATTCCATTA
Found at i:15139307 original size:64 final size:64
Alignment explanation
Indices: 15139206--15139339 Score: 223
Period size: 64 Copynumber: 2.1 Consensus size: 64
15139196 AATTTTCAAA
* * * *
15139206 TTTCTTAAAAATTAAAAATAAGTCCAGAATGAACCTAGATTGTTGATTTAAATTTGAACACTTG
1 TTTCTCAAAAATTAAAAATAAATCCAGAATGAACCTAGATTATTCATTTAAATTTGAACACTTG
*
15139270 TTTCTCAAAAATTAAAAATAAATCCAGAATGAACCTAGATTATTCATTTAAATTTGGACACTTG
1 TTTCTCAAAAATTAAAAATAAATCCAGAATGAACCTAGATTATTCATTTAAATTTGAACACTTG
15139334 TTTCTC
1 TTTCTC
15139340 TAGTTTCATT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (64 bp):
TTTCTCAAAAATTAAAAATAAATCCAGAATGAACCTAGATTATTCATTTAAATTTGAACACTTG
Found at i:15139451 original size:20 final size:20
Alignment explanation
Indices: 15139428--15139465 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15139418 GGACGATAAT
15139428 ATTTAAAAAAATTTATTTCA
1 ATTTAAAAAAATTTATTTCA
**
15139448 ATTTAAAAGCATTTATTT
1 ATTTAAAAAAATTTATTT
15139466 TTTAGGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTTAAAAAAATTTATTTCA
Found at i:15144176 original size:14 final size:14
Alignment explanation
Indices: 15144157--15144189 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
15144147 CTACCTCCGT
15144157 CCTCCACTGATCCA
1 CCTCCACTGATCCA
*
15144171 CCTCCACTGGTCCA
1 CCTCCACTGATCCA
15144185 CCTCC
1 CCTCC
15144190 GGTCTACCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.55, G:0.09, T:0.21
Consensus pattern (14 bp):
CCTCCACTGATCCA
Found at i:15146550 original size:32 final size:32
Alignment explanation
Indices: 15146509--15146569 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
15146499 GACATTGGTC
*
15146509 CTAAGTAGTTTCAAATTCATTTATTGCAAGTT
1 CTAAATAGTTTCAAATTCATTTATTGCAAGTT
15146541 CTAAATAGTTTCAAATTCATTTATTGCAA
1 CTAAATAGTTTCAAATTCATTTATTGCAA
15146570 ATCTTAGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (32 bp):
CTAAATAGTTTCAAATTCATTTATTGCAAGTT
Found at i:15147189 original size:22 final size:20
Alignment explanation
Indices: 15147146--15147184 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15147136 TAATTTAAAA
15147146 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
15147166 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
15147185 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:15147473 original size:24 final size:24
Alignment explanation
Indices: 15147446--15147492 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
15147436 ATTGAAATGG
15147446 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
15147470 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
15147493 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:15147778 original size:40 final size:41
Alignment explanation
Indices: 15147650--15147826 Score: 247
Period size: 40 Copynumber: 4.4 Consensus size: 41
15147640 CGACTTTGAG
*
15147650 TCGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
1 TCGATAAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
* * *
15147691 TCGATAAGGCACTGGGTGCCAA--T-TTACTTCGGTTTAA-
1 TCGATAAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
* *
15147728 CCGATAAGACACTGGGTGTCAATTTATTACTTCGAATT-AT
1 TCGATAAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
* *
15147768 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATAAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
15147809 TCGATAAGACACTGGGTG
1 TCGATAAGACACTGGGTG
15147827 CCAAACTGGT
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
37 19 0.16
38 13 0.11
39 3 0.03
40 44 0.38
41 38 0.32
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
TCGATAAGACACTGGGTGTCAATTTATTACTTCGGATTAAT
Found at i:15149629 original size:27 final size:28
Alignment explanation
Indices: 15149586--15149655 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
15149576 GCATAACTGT
*
15149586 ATTTATATATTTTTTAATT-T-TAAATA
1 ATTTATATATATTTTAATTATATAAATA
15149612 ATTTACTATATATTTTAATTATATAAAT-
1 ATTTA-TATATATTTTAATTATATAAATA
* *
15149640 ATTTTTATATTTTTTA
1 ATTTATATATATTTTA
15149656 TTAAAGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
26 5 0.13
27 23 0.61
28 5 0.13
29 5 0.13
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTTATATATATTTTAATTATATAAATA
Found at i:15156428 original size:14 final size:15
Alignment explanation
Indices: 15156409--15156441 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15156399 AATTTATTTT
*
15156409 AAATAT-AAATATAA
1 AAATATAAAAAATAA
15156423 AAATATAAAAAATAA
1 AAATATAAAAAATAA
15156438 AAAT
1 AAAT
15156442 TTTGTATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATATAAAAAATAA
Found at i:15158961 original size:10 final size:10
Alignment explanation
Indices: 15158946--15159043 Score: 61
Period size: 10 Copynumber: 10.0 Consensus size: 10
15158936 AATATATTTA
15158946 TTTTTAAAAT
1 TTTTTAAAAT
15158956 TTTTT-AAA-
1 TTTTTAAAAT
15158964 -TTTTAAAAT
1 TTTTTAAAAT
15158973 ATTTTTAAAATACT
1 -TTTTT-AAA-A-T
*
15158987 TTTTTTAAA-
1 TTTTTAAAAT
15158996 TTTTT-AAAT
1 TTTTTAAAAT
15159005 ATTTTT-AAAT
1 -TTTTTAAAAT
15159015 ATTTTT-AAA-
1 -TTTTTAAAAT
15159024 -TTTTAAAAT
1 TTTTTAAAAT
15159033 ATTTTTAAAAT
1 -TTTTTAAAAT
15159044 ACTTTTTTTA
Statistics
Matches: 74, Mismatches: 1, Indels: 25
0.74 0.01 0.25
Matches are distributed among these distances:
7 8 0.11
8 9 0.12
9 8 0.11
10 23 0.31
11 14 0.19
12 5 0.07
13 6 0.08
14 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:15158991 original size:32 final size:32
Alignment explanation
Indices: 15158955--15159065 Score: 176
Period size: 32 Copynumber: 3.6 Consensus size: 32
15158945 ATTTTTAAAA
15158955 TTTTTTAAATTTTAAAATATTTTTAAAATACT
1 TTTTTTAAATTTTAAAATATTTTTAAAATACT
*
15158987 TTTTTTAAATTTTTAAATATTTTT-AAATA--
1 TTTTTTAAATTTTAAAATATTTTTAAAATACT
15159016 -TTTTTAAATTTTAAAATATTTTTAAAATACT
1 TTTTTTAAATTTTAAAATATTTTTAAAATACT
*
15159047 TTTTTTAATTTTTAAAATA
1 TTTTTTAAATTTTAAAATA
15159066 AATTTTTGGT
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
28 22 0.31
29 5 0.07
31 5 0.07
32 40 0.56
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (32 bp):
TTTTTTAAATTTTAAAATATTTTTAAAATACT
Found at i:15159065 original size:60 final size:60
Alignment explanation
Indices: 15158944--15159062 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
15158934 TAAATATATT
15158944 TATTTTTAAAATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAAATTTTTAAA
1 TATTTTTAAAATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAAATTTTTAAA
15159004 TATTTTT-AAATATTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTT-AATTTTTAAA
1 TATTTTTAAAAT-TTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAAATTTTTAAA
15159063 ATAAATTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
59 14 0.24
60 44 0.76
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (60 bp):
TATTTTTAAAATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTAAATTTTTAAA
Found at i:15159071 original size:21 final size:21
Alignment explanation
Indices: 15159033--15159072 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15159023 ATTTTAAAAT
**
15159033 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
15159054 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
15159073 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:15159079 original size:22 final size:20
Alignment explanation
Indices: 15159032--15159079 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
15159022 AATTTTAAAA
* *
15159032 TATTTTTAAAATACTTTTTT
1 TATTTTTAAAATAATTTTTG
15159052 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAAT-AATTTTT-G
15159075 TATTT
1 TATTT
15159080 ATTACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 11 0.48
22 10 0.43
23 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTG
Found at i:15164930 original size:17 final size:16
Alignment explanation
Indices: 15164881--15164930 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
15164871 GCAATAATTG
*
15164881 TTGTTTAGAATAGTTA
1 TTGTTTAGAATAGCTA
* * *
15164897 TTATTTAGAACAACTA
1 TTGTTTAGAATAGCTA
15164913 TTGTTTAAGAATAGCTA
1 TTGTTT-AGAATAGCTA
15164930 T
1 T
15164931 GTTCAGACTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 17 0.65
17 9 0.35
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (16 bp):
TTGTTTAGAATAGCTA
Found at i:15167104 original size:29 final size:29
Alignment explanation
Indices: 15167062--15167119 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
15167052 TGAGTACACG
15167062 GGTATGCAAACGGGCGTATGGGGTTGCCA
1 GGTATGCAAACGGGCGTATGGGGTTGCCA
*
15167091 GGTATGCAAACGGGCGTGTGGGGTTGCCA
1 GGTATGCAAACGGGCGTATGGGGTTGCCA
15167120 TACGGGCGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.43, T:0.21
Consensus pattern (29 bp):
GGTATGCAAACGGGCGTATGGGGTTGCCA
Found at i:15176657 original size:17 final size:17
Alignment explanation
Indices: 15176635--15176690 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
15176625 AACTGACAAA
15176635 ACTATTAGGATTGAAAC
1 ACTATTAGGATTGAAAC
15176652 ACTATT---A---AAA-
1 ACTATTAGGATTGAAAC
15176662 ACTATTAGGATTGAAAC
1 ACTATTAGGATTGAAAC
*
15176679 ACTATTATGATT
1 ACTATTAGGATT
15176691 TATTATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
10 6 0.19
11 3 0.10
13 1 0.03
14 1 0.03
16 3 0.10
17 17 0.55
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (17 bp):
ACTATTAGGATTGAAAC
Found at i:15176695 original size:27 final size:27
Alignment explanation
Indices: 15176632--15176685 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
15176622 TATAACTGAC
15176632 AAAACTATTAGGATTGAAACACTATTA
1 AAAACTATTAGGATTGAAACACTATTA
15176659 AAAACTATTAGGATTGAAACACTATTA
1 AAAACTATTAGGATTGAAACACTATTA
15176686 TGATTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAACTATTAGGATTGAAACACTATTA
Found at i:15184829 original size:2 final size:2
Alignment explanation
Indices: 15184824--15184848 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15184814 CAAGCAAAAA
15184824 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
15184849 AAAAGCTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15192541 original size:45 final size:45
Alignment explanation
Indices: 15192421--15192792 Score: 215
Period size: 45 Copynumber: 8.9 Consensus size: 45
15192411 TAACTTCAAC
* *
15192421 CTGCTCCACTGCAACTTCAGGGAGATAATG-TTTGCTATGATCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCTATCATCAGT
* * * * *
15192466 CTGCCCCACTGCAACTTCAGGGGGACAAGACTTGCTTTCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * *
15192511 CTGCTCTACTACAACTTCAGAGAGATAAGAC-T--T-T-A--A-T
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * *
15192548 CTGCTCCACTGCAACTTTAGGGAGATAGGA--T--TAT--T--GA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * * * *
15192585 CT-TTCCACCGCAACTTCAGGGAG-TAAGATTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * * *
15192628 CTGCTCTACTACAACTTCAGAGATATAAGACTT--TA--ATC---
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * * *
15192666 C-GCTCCACTGTAACTTCAGGGAG-TAAGATTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
** * * * * *
15192709 CCACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTGAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
* * *
15192754 CTGTTCCATTGCAACTTCAAGGAGATAAGACTTGCTATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATC
15192793 TTCATTCCAC
Statistics
Matches: 245, Mismatches: 59, Indels: 46
0.70 0.17 0.13
Matches are distributed among these distances:
35 4 0.02
36 27 0.11
37 47 0.19
38 3 0.01
39 2 0.01
40 2 0.01
41 4 0.02
42 1 0.00
43 5 0.02
44 35 0.14
45 115 0.47
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCATCAGT
Found at i:15192563 original size:37 final size:38
Alignment explanation
Indices: 15192510--15192693 Score: 110
Period size: 37 Copynumber: 4.8 Consensus size: 38
15192500 CTTTCTTCAG
* * *
15192510 TCTGCTCTACTACAACTTCAGAGAGATAAGACT-TTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATTAA
* * * *
15192547 TCTGCTCCACTGCAACTTTAGGGAGATAGGATTATTGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATTAA
* * * *
15192585 -CT-TTCCACCGCAACTTCAGGGAG-TAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-----C-TATT-AA
* * * *
15192627 TCTGCTCTACTACAACTTCAGAGATATAAGACT-TTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATTAA
* *
15192664 TCCGCTCCACTGTAACTTCAGGGAG-TAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
15192694 TTTGCCATCT
Statistics
Matches: 108, Mismatches: 28, Indels: 23
0.68 0.18 0.14
Matches are distributed among these distances:
35 4 0.04
36 23 0.21
37 49 0.45
38 5 0.05
39 1 0.01
40 1 0.01
41 3 0.03
43 2 0.02
44 15 0.14
45 5 0.05
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (38 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATTAA
Found at i:15202715 original size:144 final size:144
Alignment explanation
Indices: 15202455--15202740 Score: 457
Period size: 144 Copynumber: 2.0 Consensus size: 144
15202445 ATATATGACC
*
15202455 TCATCCGGAAGTAACCATGGAGCTCTCCATTCGATGTCCTCTTCTAGAAGATTCTGAAGAATTGC
1 TCATCCGGAAGTAACCAAGGAGCTCTCCATTCGATGTCCTCTTCTAGAAGATTCTGAAGAATTGC
15202520 CATCCACTTCTCTTCCAAAATGCCATCTCTCCTCAGTAAAACTACTATCTCTTTAAGTGGCGAGT
66 CATCCACTTCTCTTCCAAAATGCCATCTCTCCTCAGTAAAACTACTATCTCTTTAAGTGGCGAGT
15202585 AATTCTCGGAGATG
131 AATTCTCGGAGATG
* * *
15202599 TCATCCGGAAGTAACCAAGGAGCTCTCCATTCGATGTTCTCTTCTCGAAGATTCTGAAGAATTTC
1 TCATCCGGAAGTAACCAAGGAGCTCTCCATTCGATGTCCTCTTCTAGAAGATTCTGAAGAATTGC
* * * * * *
15202664 CATTCACTTCTCCTT-TAAGATGTCATCTCTCCTCAGTGAAACTACTATCTCTTTTAGTGGCGAG
66 CATCCACTTCT-CTTCCAAAATGCCATCTCTCCTCAGTAAAACTACTATCTCTTTAAGTGGCGAG
*
15202728 TAATTTTCGGAGA
130 TAATTCTCGGAGA
15202741 AGACCCGATA
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 127 0.98
145 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (144 bp):
TCATCCGGAAGTAACCAAGGAGCTCTCCATTCGATGTCCTCTTCTAGAAGATTCTGAAGAATTGC
CATCCACTTCTCTTCCAAAATGCCATCTCTCCTCAGTAAAACTACTATCTCTTTAAGTGGCGAGT
AATTCTCGGAGATG
Found at i:15204256 original size:25 final size:25
Alignment explanation
Indices: 15204218--15204264 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
15204208 CGAAACCACT
*
15204218 TTTTGAAAACAAAAATAGTGTCGAC
1 TTTTGAAAACAAAAATAGAGTCGAC
15204243 TTTT-AAAACAAAAATAGAGTCG
1 TTTTGAAAACAAAAATAGAGTCG
15204265 CCACTAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.28
Consensus pattern (25 bp):
TTTTGAAAACAAAAATAGAGTCGAC
Found at i:15205979 original size:17 final size:17
Alignment explanation
Indices: 15205957--15206008 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
15205947 AAACAAATGC
15205957 GAGCTCATCAAGCTTGA
1 GAGCTCATCAAGCTTGA
15205974 GAGCTCA-C---CTTG-
1 GAGCTCATCAAGCTTGA
15205986 GAGCTCATCAAGCTTGA
1 GAGCTCATCAAGCTTGA
15206003 GAGCTC
1 GAGCTC
15206009 GCAAGTTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 7 0.23
13 5 0.17
16 5 0.17
17 13 0.43
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (17 bp):
GAGCTCATCAAGCTTGA
Found at i:15206923 original size:21 final size:21
Alignment explanation
Indices: 15206897--15206939 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15206887 CATCTCACTC
15206897 TTTGAACTAATCAATGCTTTG
1 TTTGAACTAATCAATGCTTTG
15206918 TTTGAACTAATCAATGCTTTG
1 TTTGAACTAATCAATGCTTTG
15206939 T
1 T
15206940 ACGCTTAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (21 bp):
TTTGAACTAATCAATGCTTTG
Found at i:15214679 original size:34 final size:34
Alignment explanation
Indices: 15214641--15214707 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
15214631 TGCTCAAAAA
15214641 AAAGAAAAAGA-AAAAGAAAGAGCATATGTACTCG
1 AAAGAAAAAGACAAAA-AAAGAGCATATGTACTCG
* * *
15214675 AAAGAAATAGACATAAAAAGAGCATGTGTACTC
1 AAAGAAAAAGACAAAAAAAGAGCATATGTACTC
15214708 AAAATGCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.90
35 3 0.10
ACGTcount: A:0.55, C:0.10, G:0.19, T:0.15
Consensus pattern (34 bp):
AAAGAAAAAGACAAAAAAAGAGCATATGTACTCG
Found at i:15215363 original size:22 final size:22
Alignment explanation
Indices: 15215329--15215372 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15215319 TTTTCACTTA
* *
15215329 AATTATTAATATATTGAATTTT
1 AATTATTAATATAATAAATTTT
**
15215351 AATTATTTTTATAATAAATTTT
1 AATTATTAATATAATAAATTTT
15215373 CACAAATCTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
AATTATTAATATAATAAATTTT
Found at i:15218954 original size:20 final size:20
Alignment explanation
Indices: 15218929--15218969 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15218919 TGTTGTTCTT
15218929 GATTTAATTAAAATGGCTTA
1 GATTTAATTAAAATGGCTTA
* *
15218949 GATTTAATTCAAATGGTTTA
1 GATTTAATTAAAATGGCTTA
15218969 G
1 G
15218970 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (20 bp):
GATTTAATTAAAATGGCTTA
Found at i:15219394 original size:17 final size:17
Alignment explanation
Indices: 15219356--15219414 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
15219346 TACATGACTA
*
15219356 CGAGCTCACCA-AGACTG
1 CGAGCTCACCATATA-TG
* *
15219373 TGAGCTCACCATATTTG
1 CGAGCTCACCATATATG
*
15219390 CGAGCCCACCATATATG
1 CGAGCTCACCATATATG
*
15219407 CAAGCTCA
1 CGAGCTCA
15219415 TCAACAGTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 32 0.97
18 1 0.03
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (17 bp):
CGAGCTCACCATATATG
Found at i:15228193 original size:14 final size:14
Alignment explanation
Indices: 15228174--15228213 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15228164 TTGATTGCCA
15228174 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
15228188 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
15228202 GGAAAATGTTTT
1 GTAAAATGTTTT
15228214 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:15228222 original size:20 final size:20
Alignment explanation
Indices: 15228197--15228236 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15228187 CGTAAAATGA
*
15228197 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
15228217 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
15228237 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:15228226 original size:34 final size:35
Alignment explanation
Indices: 15228182--15228248 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
15228172 CAGTAAAATG
*
15228182 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
15228216 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
15228249 CTGGTATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:15228252 original size:14 final size:15
Alignment explanation
Indices: 15228176--15228252 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
15228166 GATTGCCAGT
* *
15228176 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
15228190 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
15228204 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
15228224 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
15228239 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
15228253 TATTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:15229245 original size:21 final size:19
Alignment explanation
Indices: 15229200--15229247 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
15229190 ACGTATAGAT
*
15229200 TATAAAAAATAATTCCATA
1 TATAAAAAATAATTACATA
15229219 TA-AAAAAATAATTACATTA
1 TATAAAAAATAATTACA-TA
15229238 TATTAAAAAA
1 TA-TAAAAAA
15229248 ATAAATATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 13 0.52
19 6 0.24
21 6 0.24
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (19 bp):
TATAAAAAATAATTACATA
Found at i:15229341 original size:16 final size:16
Alignment explanation
Indices: 15229312--15229356 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
15229302 CATAGATTTA
* *
15229312 AAAAATAATTAAATATG
1 AAAAATAA-AAAATAAG
15229329 AAAAATAAAAAATAAG
1 AAAAATAAAAAATAAG
*
15229345 AAATATAAAAAA
1 AAAAATAAAAAA
15229357 ATTACTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (16 bp):
AAAAATAAAAAATAAG
Found at i:15229358 original size:24 final size:24
Alignment explanation
Indices: 15229310--15229356 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
15229300 TACATAGATT
* *
15229310 TAAAAAATAATTAAATATGAAAAA
1 TAAAAAATAATGAAATATAAAAAA
15229334 TAAAAAATAA-GAAATATAAAAAA
1 TAAAAAATAATGAAATATAAAAAA
15229357 ATTACTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (24 bp):
TAAAAAATAATGAAATATAAAAAA
Found at i:15234782 original size:47 final size:48
Alignment explanation
Indices: 15234700--15234793 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 48
15234690 AATATCAAAT
*
15234700 AAATGGTCAAAATAAAAAACATTCTTTTTAACATATAAACGAAAACAG
1 AAATGGTCAAAATAAAAAACAATCTTTTTAACATATAAACGAAAACAG
15234748 AAATGGTCAAAATAAAAAA-AATCTTTTTAACATATAAACGAAAACA
1 AAATGGTCAAAATAAAAAACAATCTTTTTAACATATAAACGAAAACA
15234794 TGAATTAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 26 0.58
48 19 0.42
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.24
Consensus pattern (48 bp):
AAATGGTCAAAATAAAAAACAATCTTTTTAACATATAAACGAAAACAG
Found at i:15235246 original size:16 final size:16
Alignment explanation
Indices: 15235221--15235255 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15235211 AAAACTAATT
*
15235221 AAATATGAAAAATAAA
1 AAATAAGAAAAATAAA
*
15235237 AAATAAGAAATATAAA
1 AAATAAGAAAAATAAA
15235253 AAA
1 AAA
15235256 AATTACTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AAATAAGAAAAATAAA
Found at i:15242441 original size:3 final size:3
Alignment explanation
Indices: 15242435--15242487 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
15242425 ATTATTGAAT
* *
15242435 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15242483 TTA TT
1 TTA TT
15242488 GCATTTTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:15242444 original size:18 final size:19
Alignment explanation
Indices: 15242423--15242487 Score: 89
Period size: 18 Copynumber: 3.4 Consensus size: 19
15242413 GTCATTTTAT
*
15242423 TTATTATTGAATTTATTATTA
1 TTATTATT-AA-TTATCATTA
15242444 TTATTATT-ATTATCATTA
1 TTATTATTAATTATCATTA
15242462 TTATTATT-ATTATCATTA
1 TTATTATTAATTATCATTA
15242480 TTATTATT
1 TTATTATT
15242488 GCATTTTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
18 34 0.79
19 1 0.02
21 8 0.19
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (19 bp):
TTATTATTAATTATCATTA
Found at i:15254850 original size:50 final size:50
Alignment explanation
Indices: 15254728--15254865 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 50
15254718 GTAACCATAG
* *
15254728 ATTGCAATTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTGGA
1 ATTGCAGTTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTCGA
* ** * * *
15254778 AATGCAGTGGAACAGATTGAAGCTACAACAGCGGATCAT-ACTTCCC-CGA
1 ATTGCAGTTTAAAAGATTGAAGCTACAACAGCGAATC-TCACCTCCCTCGA
* * *
15254827 CATTGCAGTTTAAAAGATCGAAGCCACAACGGCGAATCT
1 -ATTGCAGTTTAAAAGATTGAAGCTACAACAGCGAATCT
15254866 TATTTCCAGG
Statistics
Matches: 70, Mismatches: 16, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
49 3 0.04
50 66 0.94
51 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (50 bp):
ATTGCAGTTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTCGA
Found at i:15255052 original size:187 final size:187
Alignment explanation
Indices: 15254728--15255206 Score: 545
Period size: 187 Copynumber: 2.5 Consensus size: 187
15254718 GTAACCATAG
* * * ** ** *
15254728 ATTGCAATTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTGGAAATGCAGTGGAACAG
1 ATTGCAA-TTAAAAGATCGAAGCCACAACAGTGAATCTCA--TTTCTGGCGATGCAGCGGAACAG
* *
15254793 ATTGAAGCTACAACAGCG-GATCAT-ACTTCCCCGACATTGCAGTTTAAAAGATCGAAGCCACAA
63 ATTGAAGCTACAACAGCGAG-TC-TCACTT--CC-TCATTGC-G----ATAGATCGAAGCCACAA
* * *
15254856 CGGCGAATCTTATTTCCAGGTGATGCAGCAGAACAGATTGAAGCTACAACGGCGAGTCTCACTT-
118 CGGCGAATCTTACTTCCAGGCGATGCAGCAGAACAGATTGAAGCTACAACAGCGAGTCTCACTTC
15254920 CCC-C
183 CCCAC
* *
15254924 ATTGCAATTTAAAAGATCGAAGCCACAATAGTGAATCTTACTTT-TAGGCGATGCAGCGGAACAG
1 ATTGCAA-TTAAAAGATCGAAGCCACAACAGTGAATCTCA-TTTCT-GGCGATGCAGCGGAACAG
*
15254988 ATTGAAGCTACAACGGCGAGTCTCACTTCCTCATTGCGATAGATCGAAGCCACAACGGCGAATCT
63 ATTGAAGCTACAACAGCGAGTCTCACTTCCTCATTGCGATAGATCGAAGCCACAACGGCGAATCT
*
15255053 TACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAAC
128 TACTTCCAGGCGATGCAGCAGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCC-AC
* * * * * * *
15255114 ATTGCAATTAAAAGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAACAGAT
1 ATTGCAATTAAAAGATCGAAGCCACAACAGTGAATCTCATTT-CTGGCGATGCAGCGGAACAGAT
15255179 TGAAGCTACAACAGCGAGTCTCACTTCC
65 TGAAGCTACAACAGCGAGTCTCACTTCC
15255207 CCAACATTGC
Statistics
Matches: 248, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
187 76 0.31
188 6 0.02
189 70 0.28
190 9 0.04
191 1 0.00
192 6 0.02
193 2 0.01
194 2 0.01
195 40 0.16
196 36 0.15
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (187 bp):
ATTGCAATTAAAAGATCGAAGCCACAACAGTGAATCTCATTTCTGGCGATGCAGCGGAACAGATT
GAAGCTACAACAGCGAGTCTCACTTCCTCATTGCGATAGATCGAAGCCACAACGGCGAATCTTAC
TTCCAGGCGATGCAGCAGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAC
Found at i:15255107 original size:49 final size:48
Alignment explanation
Indices: 15254741--15255206 Score: 163
Period size: 49 Copynumber: 9.7 Consensus size: 48
15254731 GCAATTTAAA
* * * *
15254741 AGATTGAAGCTACAACAGCGAATCTCACCTCCCTG-GAAATGCAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTCA-CTTCCAGCG--ATGCAGAGGAAC
* * * *** *
15254791 AGATTGAAGCTACAACAGCGGATCAT-ACTTCC-CCGACATTGCAGTTTAAA
1 AGATTGAAGCCACAACAGCGAATC-TCACTTCCAGCG--A-TGCAGAGGAAC
* * * * *
15254841 AGATCGAAGCCACAACGGCGAATCTTATTTCCAGGTGATGCAGCA-GAAC
1 AGATTGAAGCCACAACAGCGAATCTCACTTCCA-GCGATGCAG-AGGAAC
* * * * ** *
15254890 AGATTGAAGCTACAACGGCGAGTCTCACTTCC--CCATTGCA-ATTTAAA
1 AGATTGAAGCCACAACAGCGAATCTCACTTCCAGCGA-TGCAGA-GGAAC
* * * * ** *
15254937 AGATCGAAGCCACAATAGTGAATCTTACTTTTAGGCGATGCAGCGGAAC
1 AGATTGAAGCCACAACAGCGAATCTCACTTCCA-GCGATGCAGAGGAAC
* * * * *
15254986 AGATTGAAGCTACAACGGCGAGTCTCACTTCC-TC-ATTGC----G-AT
1 AGATTGAAGCCACAACAGCGAATCTCACTTCCAGCGA-TGCAGAGGAAC
* * * *
15255028 AGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAAC
1 AGATTGAAGCCACAACAGCGAATCTCACTTCCA-GCGATGCAGAGGAAC
* * * ** *
15255077 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAAC-ATTGCA-ATTAAA
1 AGATTGAAGCCACAACAGCGAATCTCACTT--CCAGCGA-TGCAGAGGAAC
* * * * * * * *
15255126 AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
1 AGATTGAAGCCACAACAGCGAATCTCACTTCC-AGCGATGCAGAGGAAC
* *
15255175 AGATTGAAGCTACAACAGCGAGTCTCACTTCC
1 AGATTGAAGCCACAACAGCGAATCTCACTTCC
15255207 CCAACATTGC
Statistics
Matches: 300, Mismatches: 87, Indels: 59
0.67 0.20 0.13
Matches are distributed among these distances:
42 29 0.10
43 1 0.00
44 4 0.01
45 2 0.01
46 2 0.01
47 35 0.12
48 5 0.02
49 152 0.51
50 65 0.22
51 4 0.01
52 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (48 bp):
AGATTGAAGCCACAACAGCGAATCTCACTTCCAGCGATGCAGAGGAAC
Found at i:15255183 original size:98 final size:97
Alignment explanation
Indices: 15254728--15255287 Score: 595
Period size: 98 Copynumber: 5.8 Consensus size: 97
15254718 GTAACCATAG
* * * * * * * ** *
15254728 ATTGCAATTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCTGGAAATGCAGTGGAACAG
1 ATTGCAA-TTAAAAGATCGAAGCCACAACGGTGAATCTTA-TTTCCTGGCGATGCAGCGGAACAG
15254793 ATTGAAGCTACAACAGCG-GATCAT-ACTTCCCCGAC
64 ATTGAAGCTACAACAGCGAG-TC-TCACTTCCCC-AC
* * * * *
15254828 ATTGCAGTTTAAAAGATCGAAGCCACAACGGCGAATCTTATTTCCAGGTGATGCAGCAGAACAGA
1 ATTGCA-ATTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCTGGCGATGCAGCGGAACAGA
*
15254893 TTGAAGCTACAACGGCGAGTCTCACTT-CCC-C
65 TTGAAGCTACAACAGCGAGTCTCACTTCCCCAC
**
15254924 ATTGCAATTTAAAAGATCGAAGCCACAATAGTGAATCTTACTTT--TAGGCGATGCAGCGGAACA
1 ATTGCAA-TTAAAAGATCGAAGCCACAACGGTGAATCTTA-TTTCCT-GGCGATGCAGCGGAACA
* *
15254987 GATTGAAGCTACAACGGCGAGTCTCACTT--CCTC
63 GATTGAAGCTACAACAGCGAGTCTCACTTCCCCAC
* * * *
15255020 ATTGCGA-T---AGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
1 ATTGCAATTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCTGGCGATGCAGCGGAACAGAT
15255081 TGAAGCTACAACAGCGAGTCTCACTTCCCCAAC
66 TGAAGCTACAACAGCGAGTCTCACTTCCCC-AC
* * * * * * *
15255114 ATTGCAATTAAAAGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAACAGAT
1 ATTGCAATTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCTGGCGATGCAGCGGAACAGAT
15255179 TGAAGCTACAACAGCGAGTCTCACTTCCCCAAC
66 TGAAGCTACAACAGCGAGTCTCACTTCCCC-AC
* * * * * * *
15255212 ATTGCAATTAAAAGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAACAGAT
1 ATTGCAATTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCTGGCGATGCAGCGGAACAGAT
15255277 TGAAGCTACAA
66 TGAAGCTACAA
15255288 TGGCGAACCT
Statistics
Matches: 405, Mismatches: 39, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
90 2 0.00
91 69 0.17
93 2 0.00
94 8 0.02
95 3 0.01
96 87 0.21
97 3 0.01
98 156 0.39
99 40 0.10
100 35 0.09
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (97 bp):
ATTGCAATTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCTGGCGATGCAGCGGAACAGAT
TGAAGCTACAACAGCGAGTCTCACTTCCCCAC
Found at i:15255228 original size:49 final size:49
Alignment explanation
Indices: 15255077--15255233 Score: 163
Period size: 49 Copynumber: 3.2 Consensus size: 49
15255067 GCAGCGGAAC
15255077 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAA
1 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAA
* * * * * * *** ** * * * *
15255126 AGATTGAAGCCATAACGGTGAATCTCA-TTTCCTTGCGGTGTAGTGGAAC
1 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAAT-TAAA
15255175 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAA
1 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAA
15255224 AGATTGAAGC
1 AGATTGAAGC
15255234 CATAACGGTG
Statistics
Matches: 76, Mismatches: 30, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
48 9 0.12
49 58 0.76
50 9 0.12
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (49 bp):
AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAA
Found at i:15255250 original size:49 final size:49
Alignment explanation
Indices: 15255099--15255255 Score: 154
Period size: 49 Copynumber: 3.2 Consensus size: 49
15255089 CAACAGCGAG
15255099 TCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGTGAA
1 TCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGTGAA
* *** ** * * * * * * * * *
15255148 TCTCA-TTTCCTTGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAG
1 TCTCACTTCCCCAACATTGCAAT-TAAAAGATTGAAGCCATAACGGTGAA
15255197 TCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGTGAA
1 TCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGTGAA
*
15255246 TCTCATTTCC
1 TCTCACTTCC
15255256 TTGCGGTGTA
Statistics
Matches: 75, Mismatches: 31, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
48 9 0.12
49 57 0.76
50 9 0.12
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (49 bp):
TCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGTGAA
Found at i:15255277 original size:49 final size:49
Alignment explanation
Indices: 15255126--15255282 Score: 163
Period size: 49 Copynumber: 3.2 Consensus size: 49
15255116 TGCAATTAAA
15255126 AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
1 AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
* * * * * * *** ** * * * *
15255175 AGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAAT-TAAA
1 AGATTGAAGCCATAACGGTGAATCTCA-TTTCCTTGCGGTGTAGTGGAAC
15255224 AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
1 AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
15255273 AGATTGAAGC
1 AGATTGAAGC
15255283 TACAATGGCG
Statistics
Matches: 76, Mismatches: 30, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
48 9 0.12
49 58 0.76
50 9 0.12
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (49 bp):
AGATTGAAGCCATAACGGTGAATCTCATTTCCTTGCGGTGTAGTGGAAC
Found at i:15255313 original size:98 final size:98
Alignment explanation
Indices: 15254783--15255354 Score: 468
Period size: 98 Copynumber: 5.9 Consensus size: 98
15254773 CTGGAAATGC
* * * * *
15254783 AGTGGAACAGATTGAAGCTACAACAGCGGATCAT-ACTTCCCCGACATTGCAGTTTAAAAGATCG
1 AGTGGAACAGATTGAAGCTACAACAGC-GAACCTCACTTCCCCAACATTGCA-ATTAAAAGATTG
* * * ** * * *
15254847 AAGCCACAACGGCGAATCTTATTTCCAGGTGATGC
64 AAGCCATAACGGTGAATCTCATTTCCTTGCGGTGT
** * ** *
15254882 AGCAGAACAGATTGAAGCTACAACGGCGAGTCTCACTT-CCC--CATTGCAATTTAAAAGATCGA
1 AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAA-TTAAAAGATTGA
* ** * * * *
15254944 AGCCACAATAGTGAATCTTACTTT--TAGGCGATGC
65 AGCCATAACGGTGAATCTCA-TTTCCT-TGCGGTGT
* * ** * * *
15254978 AGCGGAACAGATTGAAGCTACAACGGCGAGTCTCACTT--CC-TCATTGCGA-T---AGATCGAA
1 AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
* * * * ** * *
15255036 GCCACAACGGCGAATCTTACTTCCAGGCGATGC
66 GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
* **
15255069 AGCGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
1 AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
15255134 GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
66 GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
**
15255167 AGTGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
1 AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
15255232 GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
66 GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
** *** * ** ** *
15255265 AGTGGAACAGATTGAAGCTACAATGGCGAACCTTGTTTTCCCGGCATTGCAGCTAGAAGATTGAA
1 AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
** *
15255330 GCCGCAACGGTGAATCTTATTTCCT
66 GCCATAACGGTGAATCTCATTTCCT
15255355 CAACGGGACC
Statistics
Matches: 411, Mismatches: 48, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
90 2 0.00
91 69 0.17
93 2 0.00
94 8 0.02
95 3 0.01
96 87 0.21
97 3 0.01
98 209 0.51
99 28 0.07
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (98 bp):
AGTGGAACAGATTGAAGCTACAACAGCGAACCTCACTTCCCCAACATTGCAATTAAAAGATTGAA
GCCATAACGGTGAATCTCATTTCCTTGCGGTGT
Found at i:15255330 original size:196 final size:194
Alignment explanation
Indices: 15254728--15255354 Score: 614
Period size: 196 Copynumber: 3.2 Consensus size: 194
15254718 GTAACCATAG
* * * * * * **
15254728 ATTGCAATTTAAAAGATTGAAGCTACAACAGCGAATCTCACCTCCCT-GGAAATGCAGTGGAACA
1 ATTGCAA-TTAAAAGATTGAAGCCACAACGGTGAATCTTA-TTTCCTAGGCGATGCAGTGGAACA
*
15254792 GATTGAAGCTACAACAGCG-GATCAT-ACTTCCCCGACATTGCAGTTTAAAAGATCGAAGCCACA
64 GATTGAAGCTACAACAGCGAG-TC-TCACTTCCCC-ACATTGCA-ATTAAAAGATCGAAGCCACA
* * * *
15254855 ACGGCGAATCTTATTTCCAGGTGATGCAGCAGAACAGATTGAAGCTACAACGGCGAGTC-TCACT
125 ACGGCGAATCTTATTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACGGCGAGTCTTAATT
15254919 TCCCC
190 TCCCC
* ** *
15254924 ATTGCAATTTAAAAGATCGAAGCCACAATAGTGAATCTTACTTT--TAGGCGATGCAGCGGAACA
1 ATTGCAA-TTAAAAGATTGAAGCCACAACGGTGAATCTTA-TTTCCTAGGCGATGCAGTGGAACA
* * *
15254987 GATTGAAGCTACAACGGCGAGTCTCACTT--CCTCATTGCGA-T---AGATCGAAGCCACAACGG
64 GATTGAAGCTACAACAGCGAGTCTCACTTCCCCACATTGCAATTAAAAGATCGAAGCCACAACGG
* * * * *
15255046 CGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCC
129 CGAATCTTATTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACGGCGAGTCTTAATTTCCC
15255111 AAC
194 --C
* * * * *
15255114 ATTGCAATTAAAAGATTGAAGCCATAACGGTGAATCTCATTTCCT-TGCGGTGTAGTGGAACAGA
1 ATTGCAATTAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCTAGGCGATGCAGTGGAACAGA
* * *
15255178 TTGAAGCTACAACAGCGAGTCTCACTTCCCCAACATTGCAATTAAAAGATTGAAGCCATAACGGT
66 TTGAAGCTACAACAGCGAGTCTCACTTCCCC-ACATTGCAATTAAAAGATCGAAGCCACAACGGC
* ** * * * * ** **
15255243 GAATCTCATTTCCTTGCGGTGTAGTGGAACAGATTGAAGCTACAATGGCGAACCTTGTTTTCCCG
130 GAATCTTATTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACGGCGAGTCTTAATTTCCC-
15255308 GC
194 -C
** * *
15255310 ATTGCAGCTAGAAGATTGAAGCCGCAACGGTGAATCTTATTTCCT
1 ATTGCAATTAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCT
15255355 CAACGGGACC
Statistics
Matches: 355, Mismatches: 61, Indels: 30
0.80 0.14 0.07
Matches are distributed among these distances:
187 69 0.19
188 7 0.02
189 68 0.19
190 10 0.03
191 2 0.01
192 13 0.04
193 3 0.01
194 2 0.01
195 38 0.11
196 143 0.40
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (194 bp):
ATTGCAATTAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCTAGGCGATGCAGTGGAACAGA
TTGAAGCTACAACAGCGAGTCTCACTTCCCCACATTGCAATTAAAAGATCGAAGCCACAACGGCG
AATCTTATTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACAACGGCGAGTCTTAATTTCCCC
Found at i:15265590 original size:51 final size:51
Alignment explanation
Indices: 15265527--15265707 Score: 206
Period size: 51 Copynumber: 3.6 Consensus size: 51
15265517 CCGGTTCACA
*
15265527 TAGTAGCCTGCACATAGTACTACACATGTGA-CTATTACCATCCGATAAACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA-TACCATCCGATACACG
* * * * * * * * * * *
15265578 TAGTATCTTGCACATAGTACTACACACGTGATCGAAACTATTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATACCATCCGATACACG
*
15265629 TAGTAGCCTGCACATAGTACTACACATGCGACCTAT--CATTCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATACCA-TCCGATACACG
15265679 TAGTAGCCTGCACATAGTACTACACATGT
1 TAGTAGCCTGCACATAGTACTACACATGT
15265708 TACCATCACT
Statistics
Matches: 104, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
49 1 0.01
50 35 0.34
51 66 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATACCATCCGATACACG
Found at i:15270871 original size:23 final size:22
Alignment explanation
Indices: 15270828--15270871 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
15270818 TTCTAAGTTG
15270828 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
15270851 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
15270872 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:15270973 original size:45 final size:45
Alignment explanation
Indices: 15270917--15271009 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
15270907 ACAGATCCTT
*
15270917 GGTGGATTCAGCACATAGCAACCACCTTATTAATCAATAATGTCC
1 GGTGGAATCAGCACATAGCAACCACCTTATTAATCAATAATGTCC
*
15270962 GGTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTCC
1 GGTGGAATCAGCACATAGCAACCACCTTATTAATCAATAATGTCC
15271007 GGT
1 GGT
15271010 TCACATAGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTATTAATCAATAATGTCC
Found at i:15272703 original size:39 final size:39
Alignment explanation
Indices: 15272643--15272721 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
15272633 CTCAGGAATG
* ** *
15272643 CTCACATATAGTGTGTTTTTCCATATAACCGCAACTTTT
1 CTCACACATAGTGTGCCTTTCCATATAACCGCAACCTTT
*
15272682 CTCACACATAGTGTGCCTTTCCATATAATCGCAACCTTT
1 CTCACACATAGTGTGCCTTTCCATATAACCGCAACCTTT
15272721 C
1 C
15272722 CTTTTCAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.37
Consensus pattern (39 bp):
CTCACACATAGTGTGCCTTTCCATATAACCGCAACCTTT
Found at i:15278343 original size:50 final size:52
Alignment explanation
Indices: 15278284--15278415 Score: 135
Period size: 50 Copynumber: 2.6 Consensus size: 52
15278274 GTGGGTTTTG
* * *
15278284 CATTTAATAAAGTTATGCATTATGTAACTTCAATGCTAG-TTAAGTATGCAT
1 CATTAAATAAAGTCATGCATTATGTAACTCCAATGCTAGTTTAAGTATGCAT
* * * * *
15278335 CA-TAAATAATGACATGCATTATGTAACTCCGATGTTAGTTTAAGTCTGCAT
1 CATTAAATAAAGTCATGCATTATGTAACTCCAATGCTAGTTTAAGTATGCAT
* * *
15278386 CATTAAATTAAGT-ATTACATTAAGTAACTC
1 CATTAAATAAAGTCA-TGCATTATGTAACTC
15278416 ATTTGTCATT
Statistics
Matches: 65, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
50 29 0.45
51 16 0.25
52 20 0.31
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (52 bp):
CATTAAATAAAGTCATGCATTATGTAACTCCAATGCTAGTTTAAGTATGCAT
Found at i:15287191 original size:14 final size:15
Alignment explanation
Indices: 15287172--15287227 Score: 75
Period size: 14 Copynumber: 4.0 Consensus size: 15
15287162 GTTTGCTAGT
15287172 AAAATG-TTTTCTGG
1 AAAATGATTTTCTGG
15287186 AAAATGATTTT-TGG
1 AAAATGATTTTCTGG
*
15287200 AAAATGATTTACT-G
1 AAAATGATTTTCTGG
15287214 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
15287228 TGTTTGGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
13 6 0.16
14 26 0.70
15 5 0.14
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:15288631 original size:32 final size:32
Alignment explanation
Indices: 15288585--15288645 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
15288575 TGTCAATCAT
15288585 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
*
15288617 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
15288646 CAATATCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:15288652 original size:27 final size:30
Alignment explanation
Indices: 15288585--15288658 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
15288575 TGTCAATCAT
*
15288585 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
15288617 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
*
15288645 -TCAATATCTCACAA
1 TTCAATATCTAACAA
15288659 ATTGAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 13 0.32
28 2 0.05
29 2 0.05
32 23 0.57
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:15293953 original size:26 final size:26
Alignment explanation
Indices: 15293924--15293974 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293914 TTGGTATTTA
15293924 GTTGATTTTCTTTATGACTAATCTTG
1 GTTGATTTTCTTTATGACTAATCTTG
15293950 GTTGATTTTCTTTATGACTAATCTT
1 GTTGATTTTCTTTATGACTAATCTT
15293975 TTAATGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55
Consensus pattern (26 bp):
GTTGATTTTCTTTATGACTAATCTTG
Found at i:15297915 original size:31 final size:31
Alignment explanation
Indices: 15297877--15297986 Score: 100
Period size: 31 Copynumber: 3.6 Consensus size: 31
15297867 ATATATATTC
15297877 ATATACAAATCAAATTCGGCAAGTTATCTTA
1 ATATACAAATCAAATTCGGCAAGTTATCTTA
* ** * *
15297908 ATATACAAATCAATTTCGATAATGTATAAC--C
1 ATATACAAATCAAATTCGGCAA-GT-TATCTTA
* * *
15297939 ATATACGAATC-AATTCGGCAACTTATCTTT
1 ATATACAAATCAAATTCGGCAAGTTATCTTA
*
15297969 ATATACAAATCAATTTCG
1 ATATACAAATCAAATTCG
15297987 ATAATGTATA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
28 3 0.05
29 1 0.02
30 17 0.28
31 34 0.57
32 2 0.03
33 3 0.05
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (31 bp):
ATATACAAATCAAATTCGGCAAGTTATCTTA
Found at i:15297965 original size:61 final size:60
Alignment explanation
Indices: 15297876--15298198 Score: 251
Period size: 61 Copynumber: 5.3 Consensus size: 60
15297866 TATATATATT
15297876 CATATACAAATCAAATTCGGCAAGTTATCTTAATATACAAATCAATTTCGATAATGTATAAC
1 CATATACAAATC-AATTCGGCAA-TTATCTTAATATACAAATCAATTTCGATAATGTATAAC
* *
15297938 CATATACGAATCAATTCGGCAACTTATCTTTATATACAAATCAATTTCGATAATGTATAAC
1 CATATACAAATCAATTCGGCAA-TTATCTTAATATACAAATCAATTTCGATAATGTATAAC
* ** * * * * ***
15297999 CATATACAAATAAATTTTAGCAATGTATAATT-ATATACGAATCAATTT-GGTGACT-TATCTT
1 CATATACAAATCAA-TTCGGCAAT-TAT-CTTAATATACAAATCAATTTCGAT-AATGTATAAC
** * * * * *
15298060 CATATACAAATCAATTTCGATAA-TATATAACCATATACAAATAAATTTC-AGCAATGTATAAT
1 CATATACAAATCAA-TTCGGCAATTATCTTA--ATATACAAATCAATTTCGA-TAATGTATAAC
* ** * * * *
15298122 TATATACGGATCAATGCGGCAACTAATCTTCATATACAAATCAATTTCGATAATATATAAC
1 CATATACAAATCAATTCGGCAA-TTATCTTAATATACAAATCAATTTCGATAATGTATAAC
* *
15298183 CATGTACAAATAAATT
1 CATATACAAATCAATT
15298199 TTAGCAATGT
Statistics
Matches: 201, Mismatches: 47, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
58 2 0.01
59 3 0.01
61 138 0.69
62 53 0.26
63 5 0.02
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (60 bp):
CATATACAAATCAATTCGGCAATTATCTTAATATACAAATCAATTTCGATAATGTATAAC
Found at i:15298015 original size:92 final size:92
Alignment explanation
Indices: 15297928--15298322 Score: 664
Period size: 92 Copynumber: 4.3 Consensus size: 92
15297918 CAATTTCGAT
** * *
15297928 AATGTATAACCATATACGAATCAATTCGGCAACTTATCTTTATATACAAATCAATTTCGATAATG
1 AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
15297993 TATAACCATATACAAATAAATTTTAGC
66 TATAACCATATACAAATAAATTTTAGC
* **
15298020 AATGTATAATTATATACGAATCAATTTGGTGACTTATCTTCATATACAAATCAATTTCGATAATA
1 AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
*
15298085 TATAACCATATACAAATAAATTTCAGC
66 TATAACCATATACAAATAAATTTTAGC
* * *
15298112 AATGTATAATTATATACGGATCAATGCGGCAACTAATCTTCATATACAAATCAATTTCGATAATA
1 AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
*
15298177 TATAACCATGTACAAATAAATTTTAGC
66 TATAACCATATACAAATAAATTTTAGC
15298204 AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
1 AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
*
15298269 TATAACCATGTACAAATAAATTTTAGC
66 TATAACCATATACAAATAAATTTTAGC
*
15298296 AATGTATAATTATATACGAATTAATTC
1 AATGTATAATTATATACGAATCAATTC
15298323 AGAAAAGTAT
Statistics
Matches: 283, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 283 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.35
Consensus pattern (92 bp):
AATGTATAATTATATACGAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATA
TATAACCATATACAAATAAATTTTAGC
Found at i:15298273 original size:61 final size:62
Alignment explanation
Indices: 15297867--15298291 Score: 212
Period size: 61 Copynumber: 6.9 Consensus size: 62
15297857 ATTCAACAAT
* * * **
15297867 ATATATATTCATATACAAATCAAATTCGGCAAGT-TAT-CTTAATATACAAATCAATTTCGATA
1 ATATATATTCATATACAAATCAATTTCGACAA-TATATAATT-ATATACAAATCAATTTCGGCA
* ** * * ** **
15297929 ATGTATAACCATATACGAATCAA-TTCGGCAACT-TATCTTTATATACAAATCAATTTCGATA
1 ATATATATTCATATACAAATCAATTTCGACAA-TATATAATTATATACAAATCAATTTCGGCA
* ** * * * * *
15297990 ATGTATAACCATATACAAATAAATTT-TAGCAATGTATAATTATATACGAATCAATTT-GGTGA
1 ATATATATTCATATACAAATCAATTTCGA-CAATATATAATTATATACAAATCAATTTCGG-CA
* * * ** * *
15298052 CT-TATCTTCATATACAAATCAATTTCGATAATATATAACCATATACAAATAAATTTCAGCA
1 ATATATATTCATATACAAATCAATTTCGACAATATATAATTATATACAAATCAATTTCGGCA
* ** * * * **
15298113 ATGTATAATT-ATATACGGATCAA-TGCGGCAACTA-AT-CTTCATATACAAATCAATTTCGATA
1 ATATAT-ATTCATATACAAATCAATTTCGACAA-TATATAATT-ATATACAAATCAATTTCGGCA
** * * * * *
15298174 ATATATAACCATGTACAAATAAATTT-TAGCAATGTATAATTATATACGAATCAA-TTCGGCA
1 ATATATATTCATATACAAATCAATTTCGA-CAATATATAATTATATACAAATCAATTTCGGCA
* * ** * *
15298235 ACT-TATCTTCATATACAAATCAATTTCGATAATATATAACCATGTACAAATAAATTT
1 A-TATATATTCATATACAAATCAATTTCGACAATATATAATTATATACAAATCAATTT
15298292 TAGCAATGTA
Statistics
Matches: 273, Mismatches: 71, Indels: 38
0.71 0.19 0.10
Matches are distributed among these distances:
60 1 0.00
61 180 0.66
62 88 0.32
63 4 0.01
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.35
Consensus pattern (62 bp):
ATATATATTCATATACAAATCAATTTCGACAATATATAATTATATACAAATCAATTTCGGCA
Found at i:15298304 original size:31 final size:30
Alignment explanation
Indices: 15297969--15298304 Score: 122
Period size: 31 Copynumber: 10.9 Consensus size: 30
15297959 ACTTATCTTT
* * *
15297969 ATATACAAATCAATTTCGATAATGTATAACC
1 ATATACAAATAAATTTAG-CAATGTATAACC
**
15298000 ATATACAAATAAATTTTAGCAATGTATAATT
1 ATATACAAATAAA-TTTAGCAATGTATAACC
* * * * * ***
15298031 ATATACGAATCAATTTGGTGACT-TATCTTC
1 ATATACAAATAAATTTAG-CAATGTATAACC
* * * *
15298061 ATATACAAATCAATTTCGATAATATATAACC
1 ATATACAAATAAATTTAG-CAATGTATAACC
**
15298092 ATATACAAATAAATTTCAGCAATGTATAATT
1 ATATACAAATAAATTT-AGCAATGTATAACC
** * *** * *
15298123 ATATACGGATCAATGCGGCAA-CTA-ATCTTC
1 ATATACAAATAAATTTAGCAATGTATAAC--C
* * * *
15298153 ATATACAAATCAATTTCGATAATATATAACC
1 ATATACAAATAAATTTAG-CAATGTATAACC
* **
15298184 ATGTACAAATAAATTTTAGCAATGTATAATT
1 ATATACAAATAAA-TTTAGCAATGTATAACC
* * ** ***
15298215 ATATACGAATCAATTCGGCAACT-TATCTTC
1 ATATACAAATAAATTTAGCAA-TGTATAACC
* * * *
15298245 ATATACAAATCAATTTCGATAATATATAACC
1 ATATACAAATAAATTTAG-CAATGTATAACC
*
15298276 ATGTACAAATAAATTTTAGCAATGTATAA
1 ATATACAAATAAA-TTTAGCAATGTATAA
15298305 TTATATACGA
Statistics
Matches: 219, Mismatches: 72, Indels: 28
0.69 0.23 0.09
Matches are distributed among these distances:
28 1 0.00
29 2 0.01
30 69 0.32
31 130 0.59
32 15 0.07
33 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.34
Consensus pattern (30 bp):
ATATACAAATAAATTTAGCAATGTATAACC
Found at i:15303748 original size:127 final size:127
Alignment explanation
Indices: 15303522--15303774 Score: 452
Period size: 127 Copynumber: 2.0 Consensus size: 127
15303512 CCTGAATAAT
*
15303522 CAACCAATCAATCATAAAACATATTAATCCTTTGCCATCATTTAATCATCGAAACATCACCTATC
1 CAACCAATCAATCATAAAACATATTAATCCTTTGCCATCACTTAATCATCGAAACATCACCTATC
**
15303587 ATAATAAGCATGCTAAACACATGGCTAATATACATACACTTCAATTACCATGATTCATCTCC
66 ATAATAAGCATGCTAAACACATAACTAATATACATACACTTCAATTACCATGATTCATCTCC
* * *
15303649 CAACCAATCAATCATAAAACATATTCATTCTTTGCCATCACTTAATCATCGAAGCATCACCTATC
1 CAACCAATCAATCATAAAACATATTAATCCTTTGCCATCACTTAATCATCGAAACATCACCTATC
15303714 ATAATAAGCATGCTAAACACATAACTAATATACATACACTTCAATTACCATGATTCATCTC
66 ATAATAAGCATGCTAAACACATAACTAATATACATACACTTCAATTACCATGATTCATCTC
15303775 ATAACATAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 120 1.00
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (127 bp):
CAACCAATCAATCATAAAACATATTAATCCTTTGCCATCACTTAATCATCGAAACATCACCTATC
ATAATAAGCATGCTAAACACATAACTAATATACATACACTTCAATTACCATGATTCATCTCC
Found at i:15304611 original size:31 final size:31
Alignment explanation
Indices: 15304572--15305182 Score: 178
Period size: 31 Copynumber: 19.7 Consensus size: 31
15304562 AATATATATA
*
15304572 TTCATATACGAATCAAATTCGGCAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
* * * ** *
15304603 TTTATATACAAATCAATTTCAGCAAAGTATA
1 TTCATATACAAATCAAATTCGGCAACTTATC
* *
15304634 ATCATATACAAATC-AATTCGACAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
* ** *
15304664 TTCATATACAAATCAATTTCGATAA-TGTATA
1 TTCATATACAAATCAAATTCGGCAACT-TATC
** * * *
15304695 ACCATATACAAGT-AAATTTCAGCAA-TGTATAA
1 TTCATATACAAATCAAA-TTCGGCAACT-TAT-C
* * *
15304727 TT-ATATACGAAT-TAATTTGGCAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
** * *
15304756 TTCATATACAAAT-AAATTTTG-ATAATATATA
1 TTCATATACAAATCAAATTCGGCA-ACT-TATC
** * * *
15304787 ACCATATACAAAT-AAATTTCAGTAA-TGTATA
1 TTCATATACAAATCAAA-TTCGGCAACT-TATC
* * *
15304818 ATCATATACGAATC-AATTCGACAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
* ** *
15304848 TTCATATACAAATCAATTTCGATAA-TGTATA
1 TTCATATACAAATCAAATTCGGCAACT-TATC
** * *
15304879 ACCATATACAAAT-AAATTTCAGCAA-TGTATAA
1 TTCATATACAAATCAAA-TTCGGCAACT-TAT-C
* *
15304911 TT-ATATACGAATC-AATTTGGCAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
** *
15304940 TTCATATACAAAT-AAATTTCGATAA-TATATA
1 TTCATATACAAATCAAA-TTCGGCAACT-TATC
** ** * *
15304971 ACCATATACAAAT-AAATTTTAGTAA-TGTATA
1 TTCATATACAAATCAAA-TTCGGCAACT-TATC
* * *
15305002 ATCATATACGAATC-AATTCGACAACTTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
* ** *
15305032 TTCATATACAAATCAATTTCGATAA-TGTATA
1 TTCATATACAAATCAAATTCGGCAACT-TATC
** * *
15305063 ACCATATACAAAT-AAATTTCAGCAA-TGTATAA
1 TTCATATACAAATCAAA-TTCGGCAACT-TAT-C
* *
15305095 TT-ATATACGAATC-AATTCGGCAACCTATC
1 TTCATATACAAATCAAATTCGGCAACTTATC
*
15305124 TTCATATA-ATTATATACGAATCAATTCAGCAACTTATC
1 TTCATATACA--A-AT-C--A--AATTCGGCAACTTATC
*
15305162 TTCATATACAAATCAATTTCG
1 TTCATATACAAATCAAATTCG
15305183 ATAATATATA
Statistics
Matches: 432, Mismatches: 107, Indels: 82
0.70 0.17 0.13
Matches are distributed among these distances:
29 7 0.02
30 133 0.31
31 253 0.59
32 9 0.02
33 3 0.01
35 1 0.00
36 2 0.00
37 1 0.00
38 22 0.05
39 1 0.00
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.35
Consensus pattern (31 bp):
TTCATATACAAATCAAATTCGGCAACTTATC
Found at i:15304713 original size:92 final size:92
Alignment explanation
Indices: 15304606--15305131 Score: 854
Period size: 92 Copynumber: 5.7 Consensus size: 92
15304596 ACTTATCTTT
* * *
15304606 ATATACAAATCAATTTCAGCAAAGTATAATCATATACAAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15304671 ACAAATCAATTTCGATAATGTATAACC
66 ACAAATCAATTTCGATAATGTATAACC
* * * * *
15304698 ATATACAAGTAAATTTCAGCAATGTATAATTATATACGAATTAATTTGGCAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
* * *
15304763 ACAAATAAATTTTGATAATATATAACC
66 ACAAATCAATTTCGATAATGTATAACC
*
15304790 ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15304855 ACAAATCAATTTCGATAATGTATAACC
66 ACAAATCAATTTCGATAATGTATAACC
* * *
15304882 ATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTTGGCAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
* *
15304947 ACAAATAAATTTCGATAATATATAACC
66 ACAAATCAATTTCGATAATGTATAACC
* *
15304974 ATATACAAATAAATTTTAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15305039 ACAAATCAATTTCGATAATGTATAACC
66 ACAAATCAATTTCGATAATGTATAACC
* * *
15305066 ATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGGCAACCTATCTTCATAT
1 ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15305131 A
66 A
15305132 ATTATATACG
Statistics
Matches: 396, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 396 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (92 bp):
ATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
ACAAATCAATTTCGATAATGTATAACC
Found at i:15304881 original size:184 final size:184
Alignment explanation
Indices: 15304606--15305131 Score: 962
Period size: 184 Copynumber: 2.9 Consensus size: 184
15304596 ACTTATCTTT
* * * *
15304606 ATATACAAATCAATTTCAGCAAAGTATAATCATATACAAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
*
15304671 ACAAATCAATTTCGATAATGTATAACCATATACAAGTAAATTTCAGCAATGTATAATTATATACG
66 ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
* *
15304736 AATTAATTTGGCAACTTATCTTCATATACAAATAAATTTTGATAATATATAACC
131 AATCAATTTGGCAACTTATCTTCATATACAAATAAATTTCGATAATATATAACC
15304790 ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15304855 ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
66 ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
15304920 AATCAATTTGGCAACTTATCTTCATATACAAATAAATTTCGATAATATATAACC
131 AATCAATTTGGCAACTTATCTTCATATACAAATAAATTTCGATAATATATAACC
*
15304974 ATATACAAATAAATTTTAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
1 ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
15305039 ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
66 ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
* *
15305104 AATCAATTCGGCAACCTATCTTCATATA
131 AATCAATTTGGCAACTTATCTTCATATA
15305132 ATTATATACG
Statistics
Matches: 332, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
184 332 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (184 bp):
ATATACAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATAT
ACAAATCAATTTCGATAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACG
AATCAATTTGGCAACTTATCTTCATATACAAATAAATTTCGATAATATATAACC
Found at i:15305132 original size:38 final size:38
Alignment explanation
Indices: 15305090--15305169 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
15305080 TTCAGCAATG
*
15305090 TATAATTATATACGAATCAATTCGGCAACCTATCTTCA
1 TATAATTATATACGAATCAATTCAGCAACCTATCTTCA
*
15305128 TATAATTATATACGAATCAATTCAGCAACTTATCTTCA
1 TATAATTATATACGAATCAATTCAGCAACCTATCTTCA
15305166 TATA
1 TATA
15305170 CAAATCAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (38 bp):
TATAATTATATACGAATCAATTCAGCAACCTATCTTCA
Found at i:15305157 original size:130 final size:122
Alignment explanation
Indices: 15304998--15305236 Score: 363
Period size: 130 Copynumber: 1.9 Consensus size: 122
15304988 TTTAGTAATG
15304998 TATAATCATATACGAATCAATTCGACAACTTATCTTCATATACAAATCAATTTCGATAATGTATA
1 TATAATCATATACGAATCAATTCGACAACTTATCTTCATATACAAATCAATTTCGATAA--TAT-
15305063 ACCATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGGCAACCTATCTTCA
63 ---ATA-AC-AATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGGCAACCTATCTTCA
*
15305128 TATAATTATATACGAATCAATTC-AGCAACTTATCTTCATATACAAATCAATTTCGATAATATAT
1 TATAATCATATACGAATCAATTCGA-CAACTTATCTTCATATACAAATCAATTTCGATAATATAT
* *
15305192 AACCATAAATTTCAGCAATGTATAATTATATACGAATTAATTCGG
65 AACAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGG
15305237 GAATGTATAA
Statistics
Matches: 105, Mismatches: 3, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
122 40 0.38
123 2 0.02
124 3 0.03
128 3 0.03
129 1 0.01
130 56 0.53
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (122 bp):
TATAATCATATACGAATCAATTCGACAACTTATCTTCATATACAAATCAATTTCGATAATATATA
ACAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGGCAACCTATCTTCA
Found at i:15312949 original size:43 final size:42
Alignment explanation
Indices: 15312854--15313038 Score: 199
Period size: 43 Copynumber: 4.3 Consensus size: 42
15312844 TTACAGAAAT
** * * **
15312854 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTAAAAAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTATCAC
* * *
15312896 AAAACACCGCTAAAGAACATGTTCTTTAGCGGCACTTTACTCAC
1 -AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTA-TCAC
* * * * *
15312940 AAATGCCGCTAAAGAACATAATCTTTAGCAGCTCTTTTTTCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGC-TTTATCAC
*
15312983 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGC-TTTATCAC
15313026 AAACGCCGCTAAA
1 AAACGCCGCTAAA
15313039 AGTACGATTC
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
43 114 0.96
44 5 0.04
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTATCAC
Found at i:15315425 original size:15 final size:14
Alignment explanation
Indices: 15315389--15315417 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15315379 AGAAACTAAA
15315389 ATAAAACTAAAAAT
1 ATAAAACTAAAAAT
15315403 ATAAAACTAAAAAT
1 ATAAAACTAAAAAT
15315417 A
1 A
15315418 ATCAAACTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAACTAAAAAT
Found at i:15317768 original size:146 final size:145
Alignment explanation
Indices: 15317489--15318127 Score: 1151
Period size: 145 Copynumber: 4.4 Consensus size: 145
15317479 AATTTTGGGA
15317489 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTT-TAGAAAACGCCGCTATTGCTTACCTTT
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTACCTTT
*
15317553 AGCGGCGCTTCTTATAAAGCGCCACAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
66 AGCGGCGCTTCTTATAAAGCGCCGC-AAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
15317618 ATTCTAAAATTTTTTT
130 ATTCTAAAATTTTTTT
* *
15317634 ATTTTTTTATAAATTTATTTATTTTTTGCGGCATTTTTATAGAAAACGCCGCTATTGCTTACCTT
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGC-GTTTTATAGAAAACGCCGCTATTGCTTACCTT
*
15317699 TAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGTCGTTTTGCT
65 TAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
15317764 ATTCTAAAATTTTTTT
130 ATTCTAAAATTTTTTT
* *
15317780 ATTTTTTTATAAATTGATTTATTTTTTACGGCG-TTTATA-AAAACACCGCTATTGCTTACCTTT
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTACCTTT
*
15317843 AGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTACTA
66 AGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
15317908 TTCTAAAA-TTTTTT
131 TTCTAAAATTTTTTT
15317922 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTT
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCG-TTTTATAGAAAACGCCGCTATTGCTTACCTT
15317987 TAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
65 TAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCT
15318052 ATTCTAAAATTTTTTT
130 ATTCTAAAATTTTTTT
*
15318068 ATTTTTTTATAAATTGACTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTA
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTA
15318128 ATTTTTTTCA
Statistics
Matches: 474, Mismatches: 14, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
142 38 0.08
143 94 0.20
144 12 0.03
145 153 0.32
146 126 0.27
147 51 0.11
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (145 bp):
ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTACCTTT
AGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
TTCTAAAATTTTTTT
Found at i:15318008 original size:288 final size:291
Alignment explanation
Indices: 15317489--15318127 Score: 1167
Period size: 288 Copynumber: 2.2 Consensus size: 291
15317479 AATTTTGGGA
*
15317489 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTAGAAAACGCCGCTATTGCTTACCTTTA
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTATAGAAAACGCCGCTATTGCTTACCTTTA
*
15317554 GCGGCGCTTCTTATAAAGCGCCACAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
66 GCGGCGCTTCTTATAAAGCGCCACAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTACTA
*
15317619 TTCTAAAATTTTTTTATTTTTTTATAAATTTATTTATTTTTTGCGGCATTTTTATAGAAAACGCC
131 TTCTAAAATTTTTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCATTTTTATAGAAAACGCC
15317684 GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAA
196 GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAA
*
15317749 CGACGTCGTTTTGCTATTCTAAAATTTTTTT
261 CGACGCCGTTTTGCTATTCTAAAATTTTTTT
* *
15317780 ATTTTTTTATAAATTGATTTATTTTTTACGGCGTTTATA-AAAACACCGCTATTGCTTACCTTTA
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTATAGAAAACGCCGCTATTGCTTACCTTTA
*
15317844 GCGGCGCTTCTTATAAAGCGCCGC-AAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTACTA
66 GCGGCGCTTCTTATAAAGCGCCACAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTACTA
*
15317908 TTCTAAAA-TTTTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAGAAAACGCC
131 TTCTAAAATTTTTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCATTTTTATAGAAAACGCC
15317972 GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAA
196 GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAA
15318037 CGACGCCGTTTTGCTATTCTAAAATTTTTTT
261 CGACGCCGTTTTGCTATTCTAAAATTTTTTT
*
15318068 ATTTTTTTATAAATTGACTTATTTTTTGCGGCGTTTTATAGAAAACGCCGCTATTGCTTA
1 ATTTTTTTATAAATTGATTTATTTTTTGCGGCG-TTTATAGAAAACGCCGCTATTGCTTA
15318128 ATTTTTTTCA
Statistics
Matches: 335, Mismatches: 11, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
288 180 0.54
289 53 0.16
290 65 0.19
291 37 0.11
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (291 bp):
ATTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTATAGAAAACGCCGCTATTGCTTACCTTTA
GCGGCGCTTCTTATAAAGCGCCACAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTACTA
TTCTAAAATTTTTTTATTTTTTTATAAATTGATTTATTTTTTGCGGCATTTTTATAGAAAACGCC
GCTATTGCTTACCTTTAGCGGCGCTTCTTATAAAGCGCCGCAAATTTTTTTCATTTTGAACAAAA
CGACGCCGTTTTGCTATTCTAAAATTTTTTT
Found at i:15318145 original size:113 final size:114
Alignment explanation
Indices: 15318014--15318241 Score: 395
Period size: 113 Copynumber: 2.0 Consensus size: 114
15318004 AAGCGCCGCA
* *
15318014 AATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTATA
1 AATTTTTTTCATTTTGAACAAAACAACGCCGTTTTACTATTCTAAAATTTTTTTATTTTTTTATA
*
15318079 AATTGACTTATTTTTTGCGGCG-TTTTATAGAAAACGCCGCTATTGCTT
66 AATTGACTTATTTTTTGCAGCGTTTTTATAGAAAACGCCGCTATTGCTT
*
15318127 AATTTTTTTCATTTTGAACAAAACAACGCCGTTTTACTATTCTAAATTTTTTTTATTTTTTTATA
1 AATTTTTTTCATTTTGAACAAAACAACGCCGTTTTACTATTCTAAAATTTTTTTATTTTTTTATA
* *
15318192 AATTGATTTATTTTTTGTAGCGTTTTTATAGAAAACGCCGCTATTGCTT
66 AATTGACTTATTTTTTGCAGCGTTTTTATAGAAAACGCCGCTATTGCTT
15318241 A
1 A
15318242 CCTTTAGCGG
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
113 81 0.75
114 27 0.25
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (114 bp):
AATTTTTTTCATTTTGAACAAAACAACGCCGTTTTACTATTCTAAAATTTTTTTATTTTTTTATA
AATTGACTTATTTTTTGCAGCGTTTTTATAGAAAACGCCGCTATTGCTT
Found at i:15319012 original size:15 final size:14
Alignment explanation
Indices: 15318995--15319065 Score: 74
Period size: 15 Copynumber: 4.9 Consensus size: 14
15318985 ACCCCTGAAT
*
15318995 CCCTAAACCTTAAAT
1 CCCTAAACCTT-AAC
15319010 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
15319024 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
15319038 CCCTAAACCTCTAAC
1 CCCTAAACCT-TAAC
15319053 CCCTAAACCTTAA
1 CCCTAAACCTTAA
15319066 ATCCCAACCC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
13 1 0.02
14 23 0.46
15 26 0.52
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:15319029 original size:14 final size:14
Alignment explanation
Indices: 15319010--15319058 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
15319000 AACCTTAAAT
15319010 CCCTAACTCTTAAC
1 CCCTAACTCTTAAC
15319024 CCCTAACATC-TAAC
1 CCCTAAC-TCTTAAC
15319038 CCCTAAAC-CTCTAAC
1 CCCT-AACTCT-TAAC
15319053 CCCTAA
1 CCCTAA
15319059 ACCTTAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.03
14 17 0.55
15 13 0.42
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAACTCTTAAC
Found at i:15319080 original size:21 final size:20
Alignment explanation
Indices: 15319050--15319090 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
15319040 CTAAACCTCT
*
15319050 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
15319071 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
15319091 TAATTCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:15319099 original size:14 final size:14
Alignment explanation
Indices: 15319081--15319122 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
15319071 AACCCTTAAA
15319081 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
15319095 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
15319110 CCATACTCCCTAA
1 CCATAATCCCTAA
15319123 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:15319119 original size:15 final size:15
Alignment explanation
Indices: 15319077--15319123 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
15319067 TCCCAACCCT
15319077 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
15319091 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
15319105 TAAATCCATACTCCC
1 TAAATCCATAATCCC
15319120 TAAA
1 TAAA
15319124 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:15319903 original size:113 final size:114
Alignment explanation
Indices: 15319423--15319995 Score: 864
Period size: 114 Copynumber: 5.0 Consensus size: 114
15319413 CAAATACTCT
* * * *
15319423 GCTAAAGCCCTGAACATTAGCGGTGTTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAA
1 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
* **
15319488 ACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAACGCC
66 ACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
* * * * * *
15319537 GCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTAAATCCCTGAAAGCTTAAAAA
1 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
* *
15319602 ACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAATGCC
66 ACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
* *
15319651 GCTAAAACCCCGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
1 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
* *
15319716 GCGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAATGCC
66 ACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
* *
15319765 GCTAAAACCCCGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
1 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
*
15319830 GCGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGC-TTCCCAAAAACGCC
66 ACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
* * *
15319878 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTATAAATGCCTCTAAATCCCCGAAAGCTC-GAGA
1 GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGA-A
* * *
15319942 AACGACGTCGTTGGGCTTAGG-TTTTTTGCGGTGCTTTCTCAAAAACGCC
65 AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
15319991 GCTAA
1 GCTAA
15319996 TGCTTATTTT
Statistics
Matches: 426, Mismatches: 31, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
112 14 0.03
113 106 0.25
114 306 0.72
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (114 bp):
GCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCGAAAGCTCAGAAA
ACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCC
Found at i:15321452 original size:6 final size:6
Alignment explanation
Indices: 15321441--15321465 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15321431 ATCGAAAAAT
15321441 TTTAAA TTTAAA TTTAAA TTTAAA T
1 TTTAAA TTTAAA TTTAAA TTTAAA T
15321466 AATAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:15324419 original size:19 final size:19
Alignment explanation
Indices: 15324388--15324427 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
15324378 TTGGTGTGCA
15324388 TTTTGCTTTCTTGTGGCTT
1 TTTTGCTTTCTTGTGGCTT
*
15324407 TTTTG-TTTGCTTGTTGCTT
1 TTTTGCTTT-CTTGTGGCTT
15324426 TT
1 TT
15324428 CGCTTTTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.00, C:0.12, G:0.20, T:0.68
Consensus pattern (19 bp):
TTTTGCTTTCTTGTGGCTT
Found at i:15326365 original size:16 final size:16
Alignment explanation
Indices: 15326344--15326381 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
15326334 ATCAAATTAA
*
15326344 TTTTAATTAATTAATT
1 TTTTAATTAAATAATT
15326360 TTTTAATTAAATAATT
1 TTTTAATTAAATAATT
15326376 TTTTAA
1 TTTTAA
15326382 CTCAGTTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTAATTAAATAATT
Found at i:15328972 original size:161 final size:161
Alignment explanation
Indices: 15328705--15329042 Score: 460
Period size: 161 Copynumber: 2.1 Consensus size: 161
15328695 GCTTTAAAAG
* * * * *
15328705 TGTAAGACTATATCTCGACTATGACAACCAATAGAGTCCATTGGGAAATTAAACATGGGGTTACA
1 TGTAAGACTATAGCTCGACTATGACAACCAATAAAGTCCATTGAGAAATCAAACATAGGGTTACA
* * *
15328770 TATGTAAGATCATAGCTCGGTTATGGCAGCATAAGGAGTCCATCAAGACAGTAAACCCGAGGTAA
66 TATGTAAGACCATAGCTCGGTTATGGCAGCATAAAGAGTCCATCAAGACAGTAAACACGAGGTAA
15328835 TCCACCAAGACATTAAACATGGGGTTACATA
131 TCCACCAAGACATTAAACATGGGGTTACATA
* * * * *
15328866 TGTAAGACCATAGCTCGCCTATGACAACCAATAAAGTTCGTTGAGACATCAAACATAGGGTTACA
1 TGTAAGACTATAGCTCGACTATGACAACCAATAAAGTCCATTGAGAAATCAAACATAGGGTTACA
* * * * * * *
15328931 TGTGTAAGACCATAGCTTGGTTGTGGCAGCATAAAGAGTCCATCAGGATAGTGAATACGAGGTAA
66 TATGTAAGACCATAGCTCGGTTATGGCAGCATAAAGAGTCCATCAAGACAGTAAACACGAGGTAA
* * *
15328996 TCTACCAGGACATTAAACATGGGGTTACATG
131 TCCACCAAGACATTAAACATGGGGTTACATA
*
15329027 TGTAAGATTATAGCTC
1 TGTAAGACTATAGCTC
15329043 AGCTATTGCA
Statistics
Matches: 152, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
161 152 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (161 bp):
TGTAAGACTATAGCTCGACTATGACAACCAATAAAGTCCATTGAGAAATCAAACATAGGGTTACA
TATGTAAGACCATAGCTCGGTTATGGCAGCATAAAGAGTCCATCAAGACAGTAAACACGAGGTAA
TCCACCAAGACATTAAACATGGGGTTACATA
Found at i:15329085 original size:94 final size:94
Alignment explanation
Indices: 15328910--15329088 Score: 207
Period size: 94 Copynumber: 1.9 Consensus size: 94
15328900 AGTTCGTTGA
** * *
15328910 GACATCAAACATAGGGTTACATGTGTAAGACCATAGCTTGGTTGTGGCAGCATAAAGAGTCCATC
1 GACATCAAACATAGGGTTACATGTGTAAGACCATAGCTCAGCTATGGCAGCATAAAGAGTCCATC
* * *
15328975 AGGATAGTGAATACGAGGTAATCTACCAG
66 AGGACAGTAAACACGAGGTAATCTACCAG
* * ** * * *
15329004 GACATTAAACATGGGGTTACATGTGTAAGATTATAGCTCAGCTATTGCAGCATAAGGAGTCC-GC
1 GACATCAAACATAGGGTTACATGTGTAAGACCATAGCTCAGCTATGGCAGCATAAAGAGTCCATC
*
15329068 TATGACAGTAAACACGAGGTA
66 -AGGACAGTAAACACGAGGTA
15329089 GTCCTCTAGG
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (94 bp):
GACATCAAACATAGGGTTACATGTGTAAGACCATAGCTCAGCTATGGCAGCATAAAGAGTCCATC
AGGACAGTAAACACGAGGTAATCTACCAG
Found at i:15329125 original size:27 final size:27
Alignment explanation
Indices: 15329061--15329135 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
15329051 CAGCATAAGG
* *
15329061 AGTCCGCTATGACAGTAAACACGAGGT
1 AGTCCTCTAGGACAGTAAACACGAGGT
*
15329088 AGTCCTCTAGGATAGTAAACACGAGGT
1 AGTCCTCTAGGACAGTAAACACGAGGT
* *
15329115 AGTTCGT-TAGGACATTAAACA
1 AG-TCCTCTAGGACAGTAAACA
15329136 TAGGGTTGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 38 0.93
28 3 0.07
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (27 bp):
AGTCCTCTAGGACAGTAAACACGAGGT
Found at i:15336845 original size:22 final size:23
Alignment explanation
Indices: 15336807--15336849 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
15336797 TAAAATTATT
*
15336807 TTTTAATTATTTTTATTTTTTAG
1 TTTTAAATATTTTTATTTTTTAG
15336830 TTTTAAATA-TTTTATTTTTT
1 TTTTAAATATTTTTATTTTTT
15336850 CACATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTAAATATTTTTATTTTTTAG
Found at i:15338603 original size:40 final size:40
Alignment explanation
Indices: 15338533--15338775 Score: 387
Period size: 40 Copynumber: 6.1 Consensus size: 40
15338523 TGTTATACTC
* ** * * *
15338533 TCTGTTCGGCGTGTTTTGGTTAGATAAGCTCTTATGTGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
* *
15338573 TCTATTTGGCGTGTTTCGGTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
15338613 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
15338653 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
* *
15338693 TCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
*
15338733 TCTGTTTGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
15338773 TCT
1 TCT
15338776 ATCTGGAATG
Statistics
Matches: 190, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 190 1.00
ACGTcount: A:0.12, C:0.16, G:0.28, T:0.44
Consensus pattern (40 bp):
TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATGAGCT
Found at i:15351303 original size:40 final size:38
Alignment explanation
Indices: 15351249--15351359 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 38
15351239 CGTTTGGACA
* * *
15351249 AAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTTAT
1 AAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGC-TTAAC
* * *
15351289 AAAAACGCCGCTAAAGATAGAGAATTAGCGGTGCTTAAC
1 AAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGCTTAAC
* * *
15351328 AGAAAATGCCGCTAAAAATTAACATTAGCGGC
1 A-AAAACGCCGCTAAAAATGAGCATTAGCGGC
15351360 ATTTTCCAAA
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 13 0.23
40 44 0.77
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (38 bp):
AAAAACGCCGCTAAAAATGAGCATTAGCGGCGCTTAAC
Found at i:15351488 original size:41 final size:40
Alignment explanation
Indices: 15351425--15351659 Score: 190
Period size: 41 Copynumber: 5.8 Consensus size: 40
15351415 TTTGGGGCCC
*
15351425 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGCCT
1 TTAGCGGCG-TTTTTGAGAAGCGCCGCTAATGCTCTAGCCT
* * *
15351466 TTAGCGGCGTTTTTGAGTAAGCGCCGCTAAAAGC-C-AGAGCA
1 TTAGCGGCGTTTTTGAG-AAGCGCCGCT-AATGCTCTAG-CCT
* * * * *
15351507 TTAGCGGCGCTTCTTAAAAAACGCCGCTAATGCTCTATCCT
1 TTAGCGGCG-TTTTTGAGAAGCGCCGCTAATGCTCTAGCCT
* * * *
15351548 TTAGCGACGTTTTTGAAGAAGTGCCGGTAATGCTCTGGCCT
1 TTAGCGGCGTTTTTG-AGAAGCGCCGCTAATGCTCTAGCCT
* * * *
15351589 TTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCT-AAGATCT
1 TTAGCGGC-GTTTTTGAGAAGCGCCGCTAATGCTCTAG-CCT
* *
15351630 TT-GCGGCGTTTTTGAAAAAGTGCCGCTAAT
1 TTAGCGGCGTTTTTG-AGAAGCGCCGCTAAT
15351660 ATATTTTTTA
Statistics
Matches: 151, Mismatches: 33, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
39 5 0.03
40 36 0.24
41 95 0.63
42 15 0.10
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (40 bp):
TTAGCGGCGTTTTTGAGAAGCGCCGCTAATGCTCTAGCCT
Found at i:15351593 original size:82 final size:81
Alignment explanation
Indices: 15351420--15351659 Score: 263
Period size: 82 Copynumber: 3.0 Consensus size: 81
15351410 GAGTTTTTGG
* *
15351420 GGCCCTTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGCCTTTAGCGGCGTTTTTG-AGT
1 GGCCATTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTATCCTTTAGCGGCGTTTTTGAAG-
* *
15351484 AAGCGCCGCTAAAAGCCA
65 AAGTGCCGCT-AATGCCA
* * * * *
15351502 GAG-CATTAGCGGCGCTTCTTAAAAAACGCCGCTAATGCTCTATCCTTTAGCGACGTTTTTGAAG
1 G-GCCATTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTATCCTTTAGCGGCGTTTTTGAAG
* *
15351566 AAGTGCCGGTAATGCTCT
65 AAGTGCCGCTAATGC-CA
* * ** *
15351584 GGCCTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTAAGAT-CTTT-GCGGCGTTTTTGAAA
1 GGCCATTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCT-CTATCCTTTAGCGGCGTTTTTGAAG
15351647 AAGTGCCGCTAAT
65 AAGTGCCGCTAAT
15351660 ATATTTTTTA
Statistics
Matches: 131, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
81 30 0.23
82 96 0.73
83 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (81 bp):
GGCCATTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTATCCTTTAGCGGCGTTTTTGAAGA
AGTGCCGCTAATGCCA
Found at i:15351967 original size:15 final size:15
Alignment explanation
Indices: 15351947--15351977 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15351937 CAAATATGGT
*
15351947 GTTTATGGATTTAAG
1 GTTTATGGAGTTAAG
15351962 GTTTATGGAGTTAAG
1 GTTTATGGAGTTAAG
15351977 G
1 G
15351978 GTTAGAGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
GTTTATGGAGTTAAG
Found at i:15352445 original size:23 final size:22
Alignment explanation
Indices: 15352415--15352468 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
15352405 TATGGTTTAA
* *
15352415 GGTTTAGGGATTAGGAGTTAGGG
1 GGTTTAGGGATTAAGAGCTA-GG
*
15352438 GGTTTAGGGGTTAAGAGCTAGG
1 GGTTTAGGGATTAAGAGCTAGG
*
15352460 GATTTAGGG
1 GGTTTAGGG
15352469 TTTCAAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.22, C:0.02, G:0.46, T:0.30
Consensus pattern (22 bp):
GGTTTAGGGATTAAGAGCTAGG
Found at i:15352829 original size:19 final size:18
Alignment explanation
Indices: 15352805--15352843 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
15352795 AATTATAAGA
15352805 AAAAATAAAATACAAAAAT
1 AAAAATAAAATA-AAAAAT
**
15352824 AAAAATGGAATAAAAAAT
1 AAAAATAAAATAAAAAAT
15352842 AA
1 AA
15352844 TTCTTTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAAATAAAATAAAAAAT
Done.