Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 52 of 141
Found at i:15661104 original size:13 final size:13
Alignment explanation
Indices: 15661086--15661110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15661076 TATTTTAATA
15661086 TTATTTTGTGTGT
1 TTATTTTGTGTGT
15661099 TTATTTTGTGTG
1 TTATTTTGTGTG
15661111 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:15662889 original size:41 final size:41
Alignment explanation
Indices: 15662641--15662878 Score: 449
Period size: 41 Copynumber: 5.8 Consensus size: 41
15662631 TTTATCGTTA
* *
15662641 GTGACATAATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15662682 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15662723 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15662764 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15662805 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
15662846 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
15662879 AAGAGCCGGT
Statistics
Matches: 194, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 194 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:15663151 original size:33 final size:32
Alignment explanation
Indices: 15663095--15663158 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
15663085 AGATATGTAT
15663095 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
15663127 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
15663159 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:15663175 original size:33 final size:33
Alignment explanation
Indices: 15663102--15663175 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
15663092 TATATATATA
* * **
15663102 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
15663134 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
15663167 TGTATGTAT
1 TATATGTAT
15663176 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:15664012 original size:14 final size:14
Alignment explanation
Indices: 15663993--15664022 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15663983 TTTTCTTTCT
15663993 TTTAATTTTATTTA
1 TTTAATTTTATTTA
15664007 TTTAATTTTATTTA
1 TTTAATTTTATTTA
15664021 TT
1 TT
15664023 ATTTTAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTAATTTTATTTA
Found at i:15665827 original size:50 final size:49
Alignment explanation
Indices: 15665703--15665923 Score: 188
Period size: 50 Copynumber: 4.6 Consensus size: 49
15665693 GGGTATAATG
* * * **
15665703 CTGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCACGT-TAAGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGT
* * *
15665751 C-GATGCCATGACCCAAACATAGTCTTACACTGACTCTCACGTATCCGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGT
* * * * **
15665799 ACTGATGCCATGTCCCCGACATGGTCTTACACCGAGTCCCACAAATCCGT
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGT
* * * * *
15665849 GCCGATGCCATGTCCTAGACATGGTCTTACATTGACACATCATGTA---G-
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACGTATCCGT
15665896 CTGATG-CATGTCCCAGACAT-GTCTTACA
1 CTGATGCCATGTCCCAGACATGGTCTTACA
15665924 TTAGCTCTCG
Statistics
Matches: 138, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 8 0.06
45 13 0.09
46 5 0.04
47 35 0.25
48 5 0.04
49 1 0.01
50 68 0.49
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGT
Found at i:15665967 original size:92 final size:94
Alignment explanation
Indices: 15665848--15666022 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 94
15665838 CACAAATCCG
* * * * * * *
15665848 TGCCGATGCCATGTCCTAGACATGGTCTTACA-TTG-ACACATCATGTAGCTGATGCATGTCCCA
1 TGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAGCCGATGCATGTCCCA
*
15665911 GACATGTCTTACATTAGCTCTCGTCTCAA
66 GACATGTCTTACACTAGCTCTCGTCTCAA
* * * *
15665940 TGCCGATGCCATATCCCAAACACGGTCTTATACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
1 TGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAGCCGATGCATGTCCCA
15666005 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
15666023 ATATAAATAT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
92 27 0.39
93 2 0.03
94 40 0.58
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
TGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAGCCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTCGTCTCAA
Found at i:15666394 original size:30 final size:30
Alignment explanation
Indices: 15666353--15666410 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15666343 CAATTTAAAA
* *
15666353 TTTTACAAAATGGCCATTTTGCCCCTAGAC
1 TTTTACAAAATGACCATTTTACCCCTAGAC
*
15666383 TTTTGCAAAATGACCATTTTACCCCTAG
1 TTTTACAAAATGACCATTTTACCCCTAG
15666411 GTCCGAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (30 bp):
TTTTACAAAATGACCATTTTACCCCTAGAC
Found at i:15670164 original size:46 final size:50
Alignment explanation
Indices: 15670104--15670266 Score: 140
Period size: 52 Copynumber: 3.2 Consensus size: 50
15670094 TAGCCTCGCC
* *
15670104 ATGGTCTTACACGGATCACA-TATC-AT-ACA-GATGCCATATCCCAGAT
1 ATGGTCTTATACGGATCACATTATCAATCACACGATGCCATAGCCCAGAT
* *
15670150 ATGGTCTTATACGGAATCATATTATCATATCACACCGATGCCATAGCCCAGCT
1 ATGGTCTTATACGG-ATCACATTATCA-ATCACA-CGATGCCATAGCCCAGAT
* * * * *
15670203 ATGGTCTTATACGGA-AACACGTATCACATTGCAC-CAATGCCATAGCCAAGCT
1 ATGGTCTTATACGGATCACA-TTATCA-A-T-CACACGATGCCATAGCCCAGAT
15670255 ATGGTCTTATAC
1 ATGGTCTTATAC
15670267 AGAAGCACAT
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
46 13 0.13
47 5 0.05
48 4 0.04
50 2 0.02
51 5 0.05
52 35 0.36
53 30 0.31
54 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
ATGGTCTTATACGGATCACATTATCAATCACACGATGCCATAGCCCAGAT
Found at i:15670200 original size:53 final size:52
Alignment explanation
Indices: 15670122--15670266 Score: 173
Period size: 53 Copynumber: 2.8 Consensus size: 52
15670112 ACACGGATCA
* * * * * *
15670122 CATATCATACAGATGCCATATCCCAGATATGGTCTTATACGGAATCATATTAT
1 CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACA-AGTAT
*
15670175 CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACACGTAT
1 CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACAAGTAT
* ** * *
15670227 CACATTGCACCAATGCCATAGCCAAGCTATGGTCTTATAC
1 CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATAC
15670267 AGAAGCACAT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
52 38 0.47
53 42 0.52
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (52 bp):
CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAACAAGTAT
Found at i:15670255 original size:52 final size:53
Alignment explanation
Indices: 15670134--15670266 Score: 169
Period size: 52 Copynumber: 2.5 Consensus size: 53
15670124 TATCATACAG
* * * * * *
15670134 ATGCCATATCCCAGATATGGTCTTATACGGAATCATATTATCATATCACACCG
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAAACATAGTATCACATCACACCA
* **
15670187 ATGCCATAGCCCAGCTATGGTCTTATACGGAAACA-CGTATCACATTGCACCA
1 ATGCCATAGCCCAGCTATGGTCTTATACGGAAACATAGTATCACATCACACCA
*
15670239 ATGCCATAGCCAAGCTATGGTCTTATAC
1 ATGCCATAGCCCAGCTATGGTCTTATAC
15670267 AGAAGCACAT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
52 38 0.54
53 32 0.46
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (53 bp):
ATGCCATAGCCCAGCTATGGTCTTATACGGAAACATAGTATCACATCACACCA
Found at i:15673615 original size:41 final size:41
Alignment explanation
Indices: 15673080--15673604 Score: 973
Period size: 41 Copynumber: 12.8 Consensus size: 41
15673070 TTTATCGTTA
* * * *
15673080 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673121 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673162 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673203 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673244 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673285 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673326 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673367 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673408 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673449 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673490 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
15673531 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
15673572 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
15673605 AAGAGCCGGT
Statistics
Matches: 476, Mismatches: 4, Indels: 8
0.98 0.01 0.02
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 471 0.99
42 2 0.00
43 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:15673875 original size:33 final size:32
Alignment explanation
Indices: 15673819--15673882 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
15673809 ATAGATATGT
15673819 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
15673851 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
15673883 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:15673899 original size:33 final size:33
Alignment explanation
Indices: 15673826--15673899 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
15673816 TGTATATATA
* * **
15673826 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
15673858 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
15673891 TGTATGTAT
1 TATATGTAT
15673900 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:15675648 original size:16 final size:15
Alignment explanation
Indices: 15675607--15675676 Score: 52
Period size: 16 Copynumber: 4.5 Consensus size: 15
15675597 ATTTTTTATT
15675607 TTTTTTATTTTAAAAAA
1 TTTTTTATTTT--AAAA
* * *
15675624 ATTATT-TTTCAAAA
1 TTTTTTATTTTAAAA
15675638 TTTTTTATTTTAAAA
1 TTTTTTATTTTAAAA
* *
15675653 TATTATAATTTTAAAA
1 T-TTTTTATTTTAAAA
*
15675669 CTTTTTAT
1 TTTTTTAT
15675677 GTTTTTATTT
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
14 8 0.20
15 13 0.32
16 15 0.38
17 4 0.10
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTTATTTTAAAA
Found at i:15675674 original size:31 final size:31
Alignment explanation
Indices: 15675608--15675676 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 31
15675598 TTTTTTATTT
*
15675608 TTTTTATTTTAAAAAAATTATTTTTCAAAAT
1 TTTTTATTTTAAAAAAATTATTTTTCAAAAC
*
15675639 TTTTTATTTT-AAAATATTATAATTTT-AAAAC
1 TTTTTATTTTAAAAAAATTAT--TTTTCAAAAC
15675670 TTTTTAT
1 TTTTTAT
15675677 GTTTTTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 9 0.26
31 21 0.62
32 4 0.12
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (31 bp):
TTTTTATTTTAAAAAAATTATTTTTCAAAAC
Found at i:15698720 original size:28 final size:29
Alignment explanation
Indices: 15698680--15698737 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
15698670 TTTATAATTC
15698680 ATAACTATATATA-TACACATATATTTTT
1 ATAACTATATATAGTACACATATATTTTT
*
15698708 ATAACTATGTATATGTACACATATATTTTT
1 ATAACTATATATA-GTACACATATATTTTT
15698738 TATTTTCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 12 0.44
30 15 0.56
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (29 bp):
ATAACTATATATAGTACACATATATTTTT
Found at i:15698791 original size:20 final size:20
Alignment explanation
Indices: 15698768--15698806 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15698758 TTATATATAC
15698768 ATATA-TTTTCATATATTTTT
1 ATATAGTTTT-ATATATTTTT
*
15698788 ATATAGTTTTATTTATTTT
1 ATATAGTTTTATATATTTT
15698807 ATTTATCGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
ATATAGTTTTATATATTTTT
Found at i:15701426 original size:360 final size:360
Alignment explanation
Indices: 15700765--15701484 Score: 1341
Period size: 360 Copynumber: 2.0 Consensus size: 360
15700755 GAGCATTTGT
* *
15700765 TTCGAGCTCTGGCCTAGTTTTGGAATTCTGCTTATAGCTGCTTCACTTTTGGGGAGGTAGACTTG
1 TTCGAGCTCTAGCCCAGTTTTGGAATTCTGCTTATAGCTGCTTCACTTTTGGGGAGGTAGACTTG
15700830 GTACCTACTATAGAGGAATATACGGCTCTGCTACATTGCCCGAGGATTCAAGTAGATAAGGTCTA
66 GTACCTACTATAGAGGAATATACGGCTCTGCTACATTGCCCGAGGATTCAAGTAGATAAGGTCTA
* *
15700895 TTCTAAAGCCGTCAACATCCCGACTTTTGTAAAAAAGTTAATGAATATCTTAGTAATGAGTGAAC
131 TTCTAAAGCCGTCAACATCCCGACTTTTATAAAAAAGTTAATGAATATCTTAGCAATGAGTGAAC
15700960 AATGGGTCTCAGCGCGGGTCAAACAAAATGGAGATAACAAATGTATCCCTTGGAAGAGTCTGATT
196 AATGGGTCTCAGCGCGGGTCAAACAAAATGGAGATAACAAATGTATCCCTTGGAAGAGTCTGATT
*
15701025 TGATTTTAGTACATCCTGATACTAAGAAAAGGGTCGATGTTTTTTCTTTGAGCATTTATGGGCTA
261 TGATTTTAGTACATCCTGATACTAAGAAAAGGGTCGATGTTTTTGCTTTGAGCATTTATGGGCTA
15701090 ATGATTTTTCCTAGAGCGCTGGGGTACATTGATGA
326 ATGATTTTTCCTAGAGCGCTGGGGTACATTGATGA
*
15701125 TTCGAGCTCTAGCCCAGTTTTGGAATTCTGCTTATAGCTGCTTCACTTTTGGGGAGGTTGACTTG
1 TTCGAGCTCTAGCCCAGTTTTGGAATTCTGCTTATAGCTGCTTCACTTTTGGGGAGGTAGACTTG
* *
15701190 GTACCTACTATAGAGGAATATACGGCTCTGCTACGTTGCCTGAGGATTCAAGTAGATAAGGTCTA
66 GTACCTACTATAGAGGAATATACGGCTCTGCTACATTGCCCGAGGATTCAAGTAGATAAGGTCTA
*
15701255 TTCTAAAGCCGTCAACATCCCGACTTTTATAAAAAAGTTAATGAATATCTTAGCAATGAGTGAGC
131 TTCTAAAGCCGTCAACATCCCGACTTTTATAAAAAAGTTAATGAATATCTTAGCAATGAGTGAAC
*
15701320 AATGGGTCTCAGCGTGGGTCAAACAAAATGGAGATAACAAATGTATCCCTTGGAAGAGTCTGATT
196 AATGGGTCTCAGCGCGGGTCAAACAAAATGGAGATAACAAATGTATCCCTTGGAAGAGTCTGATT
*
15701385 TGATTTTAGTACATCCTGATACTAAGAAGAGGGTCGATGTTTTTGCTTTGAGCATTTATGGGCTA
261 TGATTTTAGTACATCCTGATACTAAGAAAAGGGTCGATGTTTTTGCTTTGAGCATTTATGGGCTA
15701450 ATGATTTTTCCTAGAGCGCTGGGGTACATTGATGA
326 ATGATTTTTCCTAGAGCGCTGGGGTACATTGATGA
15701485 AACAGTCACT
Statistics
Matches: 349, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
360 349 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (360 bp):
TTCGAGCTCTAGCCCAGTTTTGGAATTCTGCTTATAGCTGCTTCACTTTTGGGGAGGTAGACTTG
GTACCTACTATAGAGGAATATACGGCTCTGCTACATTGCCCGAGGATTCAAGTAGATAAGGTCTA
TTCTAAAGCCGTCAACATCCCGACTTTTATAAAAAAGTTAATGAATATCTTAGCAATGAGTGAAC
AATGGGTCTCAGCGCGGGTCAAACAAAATGGAGATAACAAATGTATCCCTTGGAAGAGTCTGATT
TGATTTTAGTACATCCTGATACTAAGAAAAGGGTCGATGTTTTTGCTTTGAGCATTTATGGGCTA
ATGATTTTTCCTAGAGCGCTGGGGTACATTGATGA
Found at i:15710657 original size:102 final size:107
Alignment explanation
Indices: 15710449--15710667 Score: 245
Period size: 102 Copynumber: 2.1 Consensus size: 107
15710439 CTGGGGCACC
* * * *
15710449 TATTTTT-ATCTTATTCATTTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTTTTCATTT
1 TATTTTTCATCTTATTCATTTTCGTATCTCAGCAAAATTTGCTA-CTTGAGT-ATTATTTCATTT
*
15710513 AGAGCTTCGCTCTCAATAAATTTCCATCTTATCCATTGTGATAA
64 AGAGCTTCGCTCTCAAAAAATTTCCATCTTATCCATTGTGATAA
*
15710557 TATTTTTCATCTTATTCA-TTTCGTATCTCAGCAAAATTTGCTA-TTG-GT-TTATTT-GTTTAG
1 TATTTTTCATCTTATTCATTTTCGTATCTCAGCAAAATTTGCTACTTGAGTATTATTTCATTTAG
** * * * *
15710617 AGCTTTTCTCTCAACAAAATTT-TATTTTGTCCATTTTGATAA
66 AGCTTCGCTCTCAA-AAAATTTCCATCTTATCCATTGTGATAA
*
15710659 TCTTTTTCA
1 TATTTTTCA
15710668 AGCATTTTTC
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
102 41 0.43
103 11 0.11
105 1 0.01
106 3 0.03
108 30 0.31
109 10 0.10
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.51
Consensus pattern (107 bp):
TATTTTTCATCTTATTCATTTTCGTATCTCAGCAAAATTTGCTACTTGAGTATTATTTCATTTAG
AGCTTCGCTCTCAAAAAATTTCCATCTTATCCATTGTGATAA
Found at i:15711177 original size:42 final size:42
Alignment explanation
Indices: 15711121--15711352 Score: 122
Period size: 42 Copynumber: 5.5 Consensus size: 42
15711111 AACCTTACCT
15711121 CCCTGAAGTTGCAGTGGAGCAGATCGGC-TACGAATCCTATTA
1 CCCTGAAGTTGCAGTGGAGCAGATCGGCATAC-AATCCTATTA
* * * *
15711163 CCCTGAAGTTGCAGTAGAACAGATTAAAGTCATA-AA--CT-TTA
1 CCCTGAAGTTGCAGTGGAGCAGA-T--CGGCATACAATCCTATTA
* * * * * * *
15711204 TCTCTTTGAAGTTGAAGTAGAACAAATC-GCATTCAATCGTATCT-
1 -C-C-CTGAAGTTGCAGTGGAGCAGATCGGCATACAATCCTAT-TA
* * *
15711248 TCCTGAAGATGCAGTGGAGCAGATCGGC-TACGAATCCTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATCGGCATAC-AATCCTATTA
* * * *
15711290 CCCTGAAGTTGCAGTGGAGCAGGTTGAAG-ATACAAGTCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATCG--GCATACAA-TCCTATTA
*
15711334 CCCTGAAGATGCAGTGGAG
1 CCCTGAAGTTGCAGTGGAG
15711353 TAGACTGAAA
Statistics
Matches: 145, Mismatches: 26, Indels: 36
0.70 0.13 0.17
Matches are distributed among these distances:
40 3 0.02
41 25 0.17
42 56 0.39
43 6 0.04
44 50 0.34
45 3 0.02
46 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (42 bp):
CCCTGAAGTTGCAGTGGAGCAGATCGGCATACAATCCTATTA
Found at i:15711348 original size:44 final size:42
Alignment explanation
Indices: 15711249--15711352 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 42
15711239 ATCGTATCTT
*
15711249 CCTGAAGATGCAGTGGAGCAGATCGGCTACGAATCCTATTTC
1 CCTGAAGATGCAGTGGAGCAGATCGGATACGAATCCTATTTC
* * * *
15711291 CCTGAAGTTGCAGTGGAGCAGGTTGAAGATAC-AAGTCTTATTTC
1 CCTGAAGATGCAGTGGAGCAGATCG--GATACGAA-TCCTATTTC
15711335 CCTGAAGATGCAGTGGAG
1 CCTGAAGATGCAGTGGAG
15711353 TAGACTGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 22 0.42
43 2 0.04
44 29 0.55
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (42 bp):
CCTGAAGATGCAGTGGAGCAGATCGGATACGAATCCTATTTC
Found at i:15711708 original size:252 final size:252
Alignment explanation
Indices: 15711253--15711770 Score: 788
Period size: 252 Copynumber: 2.1 Consensus size: 252
15711243 TATCTTCCTG
* * * *
15711253 AAGATGCAGTGGAGCAGATCGGCTACGAATCCTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAA
1 AAGATTCAGTGGAGCAGATCGACTACGAATCCTATTTCCCTAAAGCTGCAGTGGAGCAGGTTGAA
* * * * *
15711318 GATACAAGTCTTATTTCCCTGAAGATGCAGTGGAGTAGACTGAAAACAACAATTTGTGTCTCCCT
66 GATACAAGTCTTATTTCCCTAAAGATACAATGGAGTAGACTGAAAACAACAAGTCGTGTCTCCCT
*
15711383 AAAGTTGTAGTGGAGCAGACAGTAGATAGCGGTTCTTATCATGTCGAATCTTATTTCCCTGAAGT
131 AAAGTTGTAGTGGAGCAGACAGTAGATAGCGATTCTTATCATGTCGAATCTTATTTCCCTGAAGT
** *
15711448 TACAGCGGAGTAGGTTGAAGTAT-GAGGCAGATTAAAACCACAAACCTTACCTCCCTA
196 TACAGCGGAGTAGGTTGAACCATAGA-GCAGAGTAAAACCACAAACCTTACCTCCCTA
* * *
15711505 AAGATTCAGTGGAGCAGATCGACTGCGAATCTTATTTCCCTAAAGCTGTAGTGGAGCAGGTTGAA
1 AAGATTCAGTGGAGCAGATCGACTACGAATCCTATTTCCCTAAAGCTGCAGTGGAGCAGGTTGAA
*
15711570 GATATAAGTCTTATTTCCCTAAAGATACAATGGAGTAGACTGAAAACAACAAGTCGTGTCTCCCT
66 GATACAAGTCTTATTTCCCTAAAGATACAATGGAGTAGACTGAAAACAACAAGTCGTGTCTCCCT
* **
15711635 AAAGTTGTAGTGGAGCGGGTAGTAGATAGCGATTCTTATCATGTCGAATCTTATTTCCCTGAAGT
131 AAAGTTGTAGTGGAGCAGACAGTAGATAGCGATTCTTATCATGTCGAATCTTATTTCCCTGAAGT
* ** *
15711700 TGCAGCGGAGTAGGTTGAACCATAGAGCAGAGTAAAACCACAAACCTTATTTCCCTG
196 TACAGCGGAGTAGGTTGAACCATAGAGCAGAGTAAAACCACAAACCTTACCTCCCTA
15711757 AAG-TTGCAGTGGAG
1 AAGATT-CAGTGGAG
15711771 TAGTTGCAGT
Statistics
Matches: 240, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
251 2 0.01
252 236 0.98
253 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (252 bp):
AAGATTCAGTGGAGCAGATCGACTACGAATCCTATTTCCCTAAAGCTGCAGTGGAGCAGGTTGAA
GATACAAGTCTTATTTCCCTAAAGATACAATGGAGTAGACTGAAAACAACAAGTCGTGTCTCCCT
AAAGTTGTAGTGGAGCAGACAGTAGATAGCGATTCTTATCATGTCGAATCTTATTTCCCTGAAGT
TACAGCGGAGTAGGTTGAACCATAGAGCAGAGTAAAACCACAAACCTTACCTCCCTA
Found at i:15713441 original size:25 final size:23
Alignment explanation
Indices: 15713402--15713461 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
15713392 TAATTCCTAT
* *
15713402 ATATATACATATTTTTTATGCATAC
1 ATATATATATATTTTATATG--TAC
*
15713427 ATATATATATTTTTTATATGTAC
1 ATATATATATATTTTATATGTAC
15713450 ATATATTATATA
1 ATATA-TATATA
15713462 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 8 0.27
24 5 0.17
25 17 0.57
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (23 bp):
ATATATATATATTTTATATGTAC
Found at i:15713450 original size:23 final size:23
Alignment explanation
Indices: 15713404--15713460 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
15713394 ATTCCTATAT
* *
15713404 ATATACATATTTTTTATGCATAC
1 ATATATATATTTTTTATACATAC
**
15713427 ATATATATATTTTTTATATGTAC
1 ATATATATATTTTTTATACATAC
15713450 ATATATTATAT
1 ATATA-TATAT
15713461 AATATATATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATATTTTTTATACATAC
Found at i:15713579 original size:28 final size:27
Alignment explanation
Indices: 15713532--15713586 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
15713522 TTTATAATTC
15713532 ATAACTATATATATACACATAT-TTTT
1 ATAACTATATATATACACATATATTTT
*
15713558 ATAACTATGTATATGTACACATATATTTT
1 ATAACTA--TATATATACACATATATTTT
15713587 TTATTTCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
28 14 0.56
29 4 0.16
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (27 bp):
ATAACTATATATATACACATATATTTT
Found at i:15713642 original size:20 final size:20
Alignment explanation
Indices: 15713619--15713656 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15713609 TATACATACA
15713619 TATA-TTTTCATATATTTTTG
1 TATAGTTTT-ATATATTTTTG
*
15713639 TATAGTTTTATTTATTTT
1 TATAGTTTTATATATTTT
15713657 ATTATCGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (20 bp):
TATAGTTTTATATATTTTTG
Found at i:15715787 original size:29 final size:28
Alignment explanation
Indices: 15715733--15715788 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
15715723 TTCAATTTTA
*
15715733 TTTTTTTCACAAGTGGTACCTAAATTAC
1 TTTTTTTCACAAGTAGTACCTAAATTAC
* * *
15715761 TTTTTTTCCCAAGCTAGTAGCTCAATTA
1 TTTTTTTCACAAG-TAGTACCTAAATTA
15715789 GTCCGATAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.43
Consensus pattern (28 bp):
TTTTTTTCACAAGTAGTACCTAAATTAC
Found at i:15723433 original size:5 final size:5
Alignment explanation
Indices: 15723423--15723447 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15723413 GTTTAAAATG
15723423 ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT
15723448 CACAACCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATGAT
Found at i:15726619 original size:19 final size:19
Alignment explanation
Indices: 15726589--15726633 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
15726579 TTCGTATCTT
*
15726589 TCTTTC-AACTCTCTCAGC
1 TCTTTCAAACTCTCTCAAC
15726607 TCTTTCAAACTCTCTCAAC
1 TCTTTCAAACTCTCTCAAC
*
15726626 TCTCTCAA
1 TCTTTCAA
15726634 TATTTTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.22, C:0.38, G:0.02, T:0.38
Consensus pattern (19 bp):
TCTTTCAAACTCTCTCAAC
Found at i:15726626 original size:9 final size:9
Alignment explanation
Indices: 15726593--15726633 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
15726583 TATCTTTCTT
15726593 TCAACTCTC
1 TCAACTCTC
* *
15726602 TCAGCTCTT
1 TCAACTCTC
15726611 TCAAACTCTC
1 TC-AACTCTC
15726621 TCAACTCTC
1 TCAACTCTC
15726630 TCAA
1 TCAA
15726634 TATTTTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.34
Consensus pattern (9 bp):
TCAACTCTC
Found at i:15728763 original size:70 final size:70
Alignment explanation
Indices: 15728616--15728814 Score: 184
Period size: 70 Copynumber: 2.8 Consensus size: 70
15728606 GAATAAAGTT
* ** * *
15728616 TTGCGCCCAACGCTAGTCATTTAACTCGACAAGATCATTTGTGTGCCCAGCACTAGTCGAACGAG
1 TTGCGCCAAACGCTAGTCAAATAACT-GAC--GAT-AGTTGTGT-CCGA-CACTAGTCGAACGAG
* *
15728681 TCGACAAGTTA
60 TCAACAAATTA
* *
15728692 TTGCGCCAAACGTTAGTCAAATAACTGACGATAGTTGTGTCCGACACTAGTTGAACGAGTCAACA
1 TTGCGCCAAACGCTAGTCAAATAACTGACGATAGTTGTGTCCGACACTAGTCGAACGAGTCAACA
15728757 AATTA
66 AATTA
* * *** * *
15728762 TTGCGCCTAGCGCTAGTTGGATATCTGACGATAGTTGTG-CCCAGCACTAGTCG
1 TTGCGCCAAACGCTAGTCAAATAACTGACGATAGTTGTGTCCGA-CACTAGTCG
15728815 GATAACCGAC
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
69 3 0.03
70 63 0.61
71 3 0.03
72 7 0.07
73 3 0.03
75 3 0.03
76 22 0.21
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (70 bp):
TTGCGCCAAACGCTAGTCAAATAACTGACGATAGTTGTGTCCGACACTAGTCGAACGAGTCAACA
AATTA
Found at i:15729865 original size:3 final size:3
Alignment explanation
Indices: 15729857--15729904 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
15729847 CTTCTTATCC
15729857 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15729905 TCTTTTCTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15732053 original size:43 final size:43
Alignment explanation
Indices: 15731996--15732130 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 43
15731986 CACAAATATT
*
15731996 GCTAAAGAACATGACCTTTAACGACGCTTTTATCACAAACACC
1 GCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACACC
* * ** * *
15732039 GCTATAGAGA-ATGACTTTTAGCGACTTTTTTTTCACAAACGCC
1 GCTAAAGA-ACATGACCTTTAGCGACGCTTTTATCACAAACACC
* * * * **
15732082 GCTAAAGAACATGATCTTTAGTGGCGCTTTTATGACAAACGTC
1 GCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACACC
15732125 GCTAAA
1 GCTAAA
15732131 AGTACCGTTC
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 71 0.97
44 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (43 bp):
GCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACACC
Found at i:15735595 original size:28 final size:27
Alignment explanation
Indices: 15735537--15735595 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
15735527 CAAACATAAG
**
15735537 TAAACCCAAAGCATAAACACTAAACTT
1 TAAACCCAAAGCATAAACACTAAACCA
* *
15735564 TAAACCCTAAAGCATAAATATTAAACCA
1 TAAACCC-AAAGCATAAACACTAAACCA
15735592 TAAA
1 TAAA
15735596 TCTCCTCCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.54, C:0.22, G:0.03, T:0.20
Consensus pattern (27 bp):
TAAACCCAAAGCATAAACACTAAACCA
Found at i:15735942 original size:15 final size:15
Alignment explanation
Indices: 15735922--15735952 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15735912 CTTTGGTTTA
15735922 GCATGCCAGTGCGGT
1 GCATGCCAGTGCGGT
15735937 GCATGCCAGTGCGGT
1 GCATGCCAGTGCGGT
15735952 G
1 G
15735953 AGAAGCAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (15 bp):
GCATGCCAGTGCGGT
Found at i:15736134 original size:6 final size:6
Alignment explanation
Indices: 15736117--15736154 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
15736107 ACCCTTCTTC
*
15736117 TCCCCTT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
15736155 GGTTTGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:15736154 original size:18 final size:18
Alignment explanation
Indices: 15736119--15736154 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15736109 CCTTCTTCTC
15736119 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
15736137 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
15736155 GGTTTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCCTT
Found at i:15739259 original size:61 final size:60
Alignment explanation
Indices: 15739189--15739366 Score: 166
Period size: 61 Copynumber: 3.0 Consensus size: 60
15739179 TTGTTAAATT
15739189 ATATTTAATAATAATAATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAATAATTTTATA-TATTATATATTATGATTTTAGTAAATTCATATAAGA
* * * * ** * * * *
15739250 ATATTTAATACTAAGAATTTTATTAAATTATATATTTTTG-TTAAATTATATTTA-ATAATA
1 ATATTTAATAATAATAATTTTA-TATATTATATA-TTATGATTTTAGTAAATTCATATAAGA
* * *
15739310 ATTATTTTA-AATTAT-ATTTTATAATATTATATATTATAATTTTAGTAAATTCATATA
1 A-TATTTAATAATAATAATTTTAT-ATATTATATATTATGATTTTAGTAAATTCATATA
15739367 TTTTATTAAA
Statistics
Matches: 89, Mismatches: 22, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
58 4 0.04
59 24 0.27
60 12 0.13
61 43 0.48
62 6 0.07
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (60 bp):
ATATTTAATAATAATAATTTTATATATTATATATTATGATTTTAGTAAATTCATATAAGA
Found at i:15739338 original size:15 final size:15
Alignment explanation
Indices: 15739294--15739349 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
15739284 TTTTTGTTAA
*
15739294 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
15739309 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
15739320 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
15739335 ATTATATATTATAAT
1 ATTATATTTTATAAT
15739350 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:15739371 original size:18 final size:17
Alignment explanation
Indices: 15739342--15739382 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
15739332 AATATTATAT
15739342 ATTATA-ATTTTAGTAA
1 ATTATATATTTTAGTAA
*
15739358 ATTCATATATTTTATTAA
1 ATT-ATATATTTTAGTAA
15739376 ATTATAT
1 ATTATAT
15739383 TTAATAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 7 0.32
18 12 0.55
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTATATATTTTAGTAA
Found at i:15739572 original size:21 final size:21
Alignment explanation
Indices: 15739546--15739600 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
15739536 ACCGCTGTTT
*
15739546 CTAATCTCACTGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
15739568 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
15739588 CTAATCTCACCGC
1 CTAATCTCACCGC
15739601 CACTGCTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.38, G:0.09, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:15739710 original size:21 final size:21
Alignment explanation
Indices: 15739686--15739725 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15739676 AATAAACCCC
*
15739686 AAACCACAAACTCTAAACTAT
1 AAACCACAAACTCAAAACTAT
**
15739707 AAACCTTAAACTCAAAACT
1 AAACCACAAACTCAAAACT
15739726 CTAATCCCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCACAAACTCAAAACTAT
Found at i:15739774 original size:7 final size:7
Alignment explanation
Indices: 15739755--15739815 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
15739745 CATTATATCA
15739755 TAAACCT
1 TAAACCT
15739762 TAAAACCT
1 T-AAACCT
*
15739770 TAAACCA
1 TAAACCT
* *
15739777 TAGACAT
1 TAAACCT
15739784 TAAACCT
1 TAAACCT
**
15739791 TAAATAT
1 TAAACCT
*
15739798 TAAACCC
1 TAAACCT
15739805 TAAACCT
1 TAAACCT
15739812 TAAA
1 TAAA
15739816 ATAAAATGAA
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
7 34 0.83
8 7 0.17
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (7 bp):
TAAACCT
Found at i:15739951 original size:40 final size:40
Alignment explanation
Indices: 15739901--15739997 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 40
15739891 GCATTTTGCG
15739901 AAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTT-C
1 AAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTAC
* * * * *
15739940 AACAAGTGCCGCTAATTCTCGATCTATTGTGGCGTTTTTAC
1 AA-AAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTAC
15739981 AAAAGCGCCGCTAATGC
1 AAAAGCGCCGCTAATGC
15739998 AACTAAAGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.04
40 44 0.90
41 3 0.06
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTAC
Found at i:15740152 original size:156 final size:154
Alignment explanation
Indices: 15739832--15740153 Score: 382
Period size: 154 Copynumber: 2.1 Consensus size: 154
15739822 TGAATTTTTA
* * *
15739832 CGCCGCTAATGCCACTAAAGCTCAACAACAAACGACGTCGTTTTCTCAACTTTTTTGCAGCATTT
1 CGCCGCTAATGCAACTAAAGCTCAAAAACAAACGACATCGTTTTCTCAACTTTTTTGCAGCATTT
* * *
15739897 TGCGAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAACAAGTGCCGCTAATTCTCGA
66 TGCGAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAACAAGAGCCGCAAATTCTCAA
* *
15739962 TCTATTGTGGCGTTTTTACAAAAG
131 TCTATTGCGGCATTTTTACAAAAG
* * **
15739986 CGCCGCTAATGCAACTAAAGCTCAAAAACAAACGACATTGTTTTGCTCAATTTTTTTGTGGCATT
1 CGCCGCTAATGCAACTAAAGCTCAAAAACAAACGACATCGTTTT-CTCAACTTTTTTGCAGCATT
* * * * **
15740051 TTTCTGAAAAGTGTCGCTAATGCTCAATCTATAGACGTG-TTTTTTTGACAA-AGCACAGCAAAT
65 TTGC-GAAAAGCGCCGCTAATGCTCAATCTATAG-CG-GCGTTTTTCAACAAGAGC-C-GCAAAT
*
15740114 TCTCAATCTATTGCGGCATTTTT-TAAAAG
125 TCTCAATCTATTGCGGCATTTTTACAAAAG
*
15740143 CGTCG-TAATGC
1 CGCCGCTAATGC
15740154 TCGATCTATT
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
154 40 0.28
155 20 0.14
156 35 0.25
157 21 0.15
158 26 0.18
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (154 bp):
CGCCGCTAATGCAACTAAAGCTCAAAAACAAACGACATCGTTTTCTCAACTTTTTTGCAGCATTT
TGCGAAAAGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTCAACAAGAGCCGCAAATTCTCAA
TCTATTGCGGCATTTTTACAAAAG
Found at i:15740192 original size:40 final size:38
Alignment explanation
Indices: 15740119--15740193 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 38
15740109 CAAATTCTCA
*
15740119 ATCTATTGCGGCATTTTTTAAAAGCGTCGTAATGCTCG
1 ATCTATTGCGGCATTTTTTAAAAGCGCCGTAATGCTCG
*
15740157 ATCTATTGCGGCATTTTTTTAAAAGTGCCGCTAATGC
1 ATCTATTGCGGCA-TTTTTTAAAAGCGCCG-TAATGC
15740194 CACTAAAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 13 0.39
39 14 0.42
40 6 0.18
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (38 bp):
ATCTATTGCGGCATTTTTTAAAAGCGCCGTAATGCTCG
Found at i:15740342 original size:40 final size:39
Alignment explanation
Indices: 15740251--15740386 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 39
15740241 GTGTTTTCTG
*
15740251 AAAAGCGCCGCTAATGCTCGATTATTGCGGCGTTTTTCGA
1 AAAAGCGCCGCTAATGCTCGATTATAGCGGCGTTTTTC-A
* * *
15740291 GAAA-CGTCGCTAATACAT-GATCTATAGCGGCGTTTTTCA
1 AAAAGCGCCGCTAATGC-TCGAT-TATAGCGGCGTTTTTCA
* *
15740330 AAAAGGGCCGCTAATGCTCGATTTATAGCGGC-ATTTTCA
1 AAAAGCGCCGCTAATGCTCGA-TTATAGCGGCGTTTTTCA
*
15740369 AAAAGCGCTGCTAATGCT
1 AAAAGCGCCGCTAATGCT
15740387 TGACCTATAG
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
39 40 0.50
40 39 0.49
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (39 bp):
AAAAGCGCCGCTAATGCTCGATTATAGCGGCGTTTTTCA
Found at i:15740395 original size:79 final size:79
Alignment explanation
Indices: 15740251--15740396 Score: 181
Period size: 79 Copynumber: 1.8 Consensus size: 79
15740241 GTGTTTTCTG
* * * *
15740251 AAAAGCGCCGCTAATGCTCGATTATTGCGGCGTTTTTCGAGAAACGTCGCTAATACATGATCTAT
1 AAAAGCGCCGCTAATGCTCGATTATAGCGGCGATTTTCGAAAAACGTCGCTAATACATGACCTAT
15740316 AGCGGCGTTTTTCA
66 AGCGGCGTTTTTCA
* * *
15740330 AAAAGGGCCGCTAATGCTCGATTTATAGCGGC-ATTTTC-AAAAAGCG-CTGCTAATGCTTGACC
1 AAAAGCGCCGCTAATGCTCGA-TTATAGCGGCGATTTTCGAAAAA-CGTC-GCTAATACATGACC
15740392 TATAG
63 TATAG
15740397 TGACTTTTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
78 5 0.09
79 43 0.75
80 9 0.16
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (79 bp):
AAAAGCGCCGCTAATGCTCGATTATAGCGGCGATTTTCGAAAAACGTCGCTAATACATGACCTAT
AGCGGCGTTTTTCA
Found at i:15748355 original size:20 final size:20
Alignment explanation
Indices: 15748330--15748373 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
15748320 CCAGTTTAGA
15748330 AAATATAAAAAATATTCTCT
1 AAATATAAAAAATATTCTCT
15748350 AAATATAAAAAATATTCTCT
1 AAATATAAAAAATATTCTCT
15748370 AAAT
1 AAAT
15748374 GCTTTGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATATAAAAAATATTCTCT
Found at i:15749598 original size:20 final size:20
Alignment explanation
Indices: 15749573--15749616 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
15749563 CCAGTTTAGA
15749573 AAATATAAAAAATATTCTCT
1 AAATATAAAAAATATTCTCT
15749593 AAATATAAAAAATATTCTCT
1 AAATATAAAAAATATTCTCT
15749613 AAAT
1 AAAT
15749617 GCTTTGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATATAAAAAATATTCTCT
Found at i:15758104 original size:42 final size:41
Alignment explanation
Indices: 15758058--15758196 Score: 163
Period size: 42 Copynumber: 3.3 Consensus size: 41
15758048 ATAACTAGCT
*
15758058 ATGGTCTTACACGATTCTCATATCGATACCAATTTCCCAGAC
1 ATGGTCTTACACGA-TCTCATATCGATACCAATGTCCCAGAC
* **
15758100 ATGGTCTTACGCGGATCTCATATCGATGTCAATGTCCCAGAC
1 ATGGTCTTACAC-GATCTCATATCGATACCAATGTCCCAGAC
* * * *
15758142 ATGGTCTTACATGAATCACATAAC-AAAGCCAATGTCCCAGAC
1 ATGGTCTTACACG-ATCTCATATCGATA-CCAATGTCCCAGAC
15758184 ATGGTCTTACACG
1 ATGGTCTTACACG
15758197 TAATCATATC
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 78 0.95
43 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (41 bp):
ATGGTCTTACACGATCTCATATCGATACCAATGTCCCAGAC
Found at i:15760060 original size:42 final size:43
Alignment explanation
Indices: 15759950--15760065 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 43
15759940 CTCGTACAAT
* * * * *
15759950 GCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATAACGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCAAATAACGAC
* * *
15759993 GCCACTGTCCCAGACAGGGTCTTACACGTAATCATAT-ACGAC
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCAAATAACGAC
*
15760035 GCCAATGTTCCAGACATGGTCTTACACGTAA
1 GCCAATGTCCCAGACATGGTCTTACACGTAA
15760066 ATCTCAAATC
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCAAATAACGAC
Found at i:15763013 original size:70 final size:70
Alignment explanation
Indices: 15762890--15763142 Score: 301
Period size: 70 Copynumber: 3.6 Consensus size: 70
15762880 ACCGTGAATT
* * * * ** * * * *
15762890 AATTTTTGTGCCCAACGCTAGTCGGGTAACCGGCGATAGTTTTTCCCAACACTAGTCAAACGAGT
1 AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAGCACTAGTCAAATGAGT
15762955 CAACA
66 CAACA
* *
15762960 AATTATTGCGCCCAGCGTTAGTCGGATAACCGATGATAGTTGTGCCTAGCACTAGTCAAATGAGT
1 AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAGCACTAGTCAAATGAG-
*
15763025 TGAA-A
65 TCAACA
* * ** * * *
15763030 AATTATTACGCCTAGTACTAGTCGGATAACTGACGATAGTTGTGCCCAGCACTAGTCGAATGAGT
1 AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAGCACTAGTCAAATGAGT
*
15763095 CGACA
66 CAACA
15763100 AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGT
1 AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGT
15763143 TCATCCGCGA
Statistics
Matches: 151, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
69 2 0.01
70 146 0.97
71 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (70 bp):
AATTATTGCGCCCAGCGCTAGTCGGATAACCGATGATAGTTGTGCCCAGCACTAGTCAAATGAGT
CAACA
Found at i:15763086 original size:34 final size:34
Alignment explanation
Indices: 15763046--15763142 Score: 88
Period size: 36 Copynumber: 2.8 Consensus size: 34
15763036 TACGCCTAGT
15763046 ACTAGTCGGATAACTGACGATAGTTGTGCCCAGC
1 ACTAGTCGGATAACTGACGATAGTTGTGCCCAGC
* * * * *
15763080 ACTAGTCGAATGAGTCGACAAATTA-TTGCGCCCAGC
1 ACTAGTCGGATAACT-GAC-GA-TAGTTGTGCCCAGC
* * *
15763116 GCTAGTCGGATAACCGATGATAGTTGT
1 ACTAGTCGGATAACTGACGATAGTTGT
15763143 TCATCCGCGA
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
33 2 0.04
34 16 0.35
35 5 0.11
36 21 0.46
37 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (34 bp):
ACTAGTCGGATAACTGACGATAGTTGTGCCCAGC
Found at i:15763400 original size:18 final size:18
Alignment explanation
Indices: 15763373--15763410 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
15763363 TTTTAGATTT
*
15763373 TCCACGATTCATGTCCGG
1 TCCACAATTCATGTCCGG
15763391 TCCACAATTCATGTCCGG
1 TCCACAATTCATGTCCGG
15763409 TC
1 TC
15763411 TATTCGGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.29
Consensus pattern (18 bp):
TCCACAATTCATGTCCGG
Found at i:15764357 original size:18 final size:18
Alignment explanation
Indices: 15764334--15764368 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15764324 CTACCTTTAT
*
15764334 CATTTAATTTAATCTTTG
1 CATTTAATTTAAGCTTTG
15764352 CATTTAATTTAAGCTTT
1 CATTTAATTTAAGCTTT
15764369 AATTTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54
Consensus pattern (18 bp):
CATTTAATTTAAGCTTTG
Found at i:15764375 original size:18 final size:18
Alignment explanation
Indices: 15764335--15764373 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15764325 TACCTTTATC
* *
15764335 ATTTAATTTAATCTTTGC
1 ATTTAATTTAAGCTTTGA
15764353 ATTTAATTTAAGCTTT-A
1 ATTTAATTTAAGCTTTGA
15764370 ATTT
1 ATTT
15764374 TACAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (18 bp):
ATTTAATTTAAGCTTTGA
Found at i:15777252 original size:70 final size:70
Alignment explanation
Indices: 15777106--15777558 Score: 453
Period size: 70 Copynumber: 6.5 Consensus size: 70
15777096 TTTATTGAAA
* * * *
15777106 CTCCAAACAGTTAGCGAGAGTTAGAAGCTCCCAACTGTCATTTTAAGGC-T-CAGAAGTTCATTA
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAG--GTTTAATA
**
15777169 CCGTAGC
64 CCACAGC
* * * * * *
15777176 CCCCAAATAATTAGCGAGAGTTAAAAGCTCCCAGTTGTCATTTTAAGGTTTGCAGGTTTAACACC
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATACC
15777241 ACAGC
66 ACAGC
* * * * *
15777246 CTCCAAATAGTTAGCAAGAGTTAAAAGCTCCAAGCTATCATTTTAAGGTTTGCAGGTTTAATACC
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATACC
*
15777311 ACATC
66 ACAGC
* * * * *
15777316 TTCCAAACAATTAGCGAGAGTTCAAAGCTCCCAGCTGTCATTTTAAGGCTTGTAGGTTTAATACT
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATACC
* *
15777381 GCAGA
66 ACAGC
* ** * ** * *
15777386 CTCCAAACAGTTAGCGAGAGTTCAAAGCTCGTAGCCGTCATTTTAACACTCGCATGTTTAATACC
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATACC
* *
15777451 ATAAC
66 ACAGC
* * * ** * * *
15777456 C-CCAAAACAATTAGCGAGAGCTCAAAGCTCCCAGCTGTCATTTTAAGGCTCACAGGTCTAACAT
1 CTCC-AAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATAC
*
15777520 CATAGC
65 CACAGC
*
15777526 CTCCAAACAGTTAACGAGAGTTAAAAGCTCCCA
1 CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCA
15777559 ATTGATTATT
Statistics
Matches: 314, Mismatches: 65, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
69 2 0.01
70 306 0.97
71 3 0.01
72 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (70 bp):
CTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTTGCAGGTTTAATACC
ACAGC
Found at i:15786572 original size:27 final size:27
Alignment explanation
Indices: 15786534--15786613 Score: 160
Period size: 27 Copynumber: 3.0 Consensus size: 27
15786524 TGAATATAAA
15786534 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
15786561 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
15786588 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
15786614 GACTCATTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:15786628 original size:131 final size:129
Alignment explanation
Indices: 15786432--15786685 Score: 427
Period size: 131 Copynumber: 2.0 Consensus size: 129
15786422 GAATATGAAG
* *
15786432 GGGGTTGCTAAGTGCTGATTCCCCCAATGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGATGGT
* *
15786497 TGCTAAGTGCTGATTCCACCGTATCCTTGAATATAAAAAGGGGTTGCTAAGTGCTGATTCCCCCA
66 TGCTAAGTGCTGATCCCACCGTAT-CTTAAATAT-AAAAGGGGTTGCTAAGTGCTGATTCCCCCA
15786562 A
129 A
15786563 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGATGGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGATGGT
* * *
15786628 TGCTAAGTGCTGATCCCATCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTC
66 TGCTAAGTGCTGATCCCACCGTATCTTAAATATAAAAGGGGTTGCTAAGTGCTGATTC
15786686 TGCGAATTAC
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
129 24 0.21
130 7 0.06
131 85 0.73
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (129 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGATGGT
TGCTAAGTGCTGATCCCACCGTATCTTAAATATAAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:15786771 original size:79 final size:81
Alignment explanation
Indices: 15786639--15786794 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 81
15786629 GCTAAGTGCT
* * ** *
15786639 GATCCCATCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCTGCGAATTAC-TGGTTGC
1 GATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACGTGGTTGC
15786703 TAAGTGCTGATTCTCC
66 TAAGTGCTGATTCTCC
15786719 GATCCCACCATATCTTAAATGTG-AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTT
1 GATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGAATCAC--GTGGTT
15786783 GCTAAGTGCTGA
64 GCTAAGTGCTGA
15786795 ATCCACCGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
79 30 0.44
80 21 0.31
82 17 0.25
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (81 bp):
GATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACGTGGTTGC
TAAGTGCTGATTCTCC
Found at i:15791603 original size:641 final size:641
Alignment explanation
Indices: 15790382--15791661 Score: 2533
Period size: 641 Copynumber: 2.0 Consensus size: 641
15790372 TGCTTCGAGA
15790382 CAACTGAAACCGCACGAGAAGAATTATCCAATGCATGATTTAGAATTGGCTACCATTATTTTTGC
1 CAACTGAAACCGCACGAGAAGAATTATCCAATGCATGATTTAGAATTGGCTACCATTATTTTTGC
*
15790447 TTTAAAAATTTGGCATCATTATCTGTATGGTGAGAAATGTTGAATCTTCACTGATCATAAGAGTT
66 TTTAAAAATTTGGCATCATTATCTGTATGGTGAGAAATGCTGAATCTTCACTGATCATAAGAGTT
15790512 TGAAGTATTTAATGAATAAAAAAGACTTGAATTTGAGACAATGAAGATGGCTCGAGCTAATAAAA
131 TGAAGTATTTAATGAATAAAAAAGACTTGAATTTGAGACAATGAAGATGGCTCGAGCTAATAAAA
15790577 GATTATGAGCTAGTGATTGATTATCATCCTGGAAAAGCTAATGTTGTTGCTGATGCCTTGAGCAG
196 GATTATGAGCTAGTGATTGATTATCATCCTGGAAAAGCTAATGTTGTTGCTGATGCCTTGAGCAG
*
15790642 AAAATCTTTATTTGCTTTGAGAGCTATGAGTACGAGATTAATTTTATCTGATGATGGTTCAATTT
261 AAAATCTTTATTTCCTTTGAGAGCTATGAGTACGAGATTAATTTTATCTGATGATGGTTCAATTT
15790707 TGGCTGAATTGAGGGCTAGACCGTTATTCCTTCAGCAAATTCGGGAAGCACAAAAGAATGACAGT
326 TGGCTGAATTGAGGGCTAGACCGTTATTCCTTCAGCAAATTCGGGAAGCACAAAAGAATGACAGT
15790772 GAATTGCAAGCCAGGAGAGCTCAGTGTGAAGCAGGTGTTGATTCAGATTTTCGAATTAGATCAGA
391 GAATTGCAAGCCAGGAGAGCTCAGTGTGAAGCAGGTGTTGATTCAGATTTTCGAATTAGATCAGA
15790837 TGATTGTCTAATGTTCTAAGATAGGGTATGTGTACCGAGAAATGATGAGTTGATTCGGACCATTT
456 TGATTGTCTAATGTTCTAAGATAGGGTATGTGTACCGAGAAATGATGAGTTGATTCGGACCATTT
15790902 TATGTGAGGCACATAGTGGTGATTTGTTAGTTCATCCAGGTAGTGTGAAAATGTATAATGATTTC
521 TATGTGAGGCACATAGTGGTGATTTGTTAGTTCATCCAGGTAGTGTGAAAATGTATAATGATTTC
15790967 AAGAAATTGTATTGGTGGCCGGGCATGAAAAAGGATATCTCAGAATTTGTATCAGG
586 AAGAAATTGTATTGGTGGCCGGGCATGAAAAAGGATATCTCAGAATTTGTATCAGG
*
15791023 CAACTGAAACCGCACGAGAAGAATTATCCAATGCATGATTTAGAATTGGCTGCCATTATTTTTGC
1 CAACTGAAACCGCACGAGAAGAATTATCCAATGCATGATTTAGAATTGGCTACCATTATTTTTGC
15791088 TTTAAAAATTTGGCATCATTATCTGTATGGTGAGAAATGCTGAATCTTCACTGATCATAAGAGTT
66 TTTAAAAATTTGGCATCATTATCTGTATGGTGAGAAATGCTGAATCTTCACTGATCATAAGAGTT
15791153 TGAAGTATTTAATGAATAAAAAAGACTTGAATTTGAGACAATGAAGATGGCTCGAGCTAATAAAA
131 TGAAGTATTTAATGAATAAAAAAGACTTGAATTTGAGACAATGAAGATGGCTCGAGCTAATAAAA
15791218 GATTATGAGCTAGTGATTGATTATCATCCTGGAAAAGCTAATGTTGTTGCTGATGCCTTGAGCAG
196 GATTATGAGCTAGTGATTGATTATCATCCTGGAAAAGCTAATGTTGTTGCTGATGCCTTGAGCAG
15791283 AAAATCTTTATTTCCTTTGAGAGCTATGAGTACGAGATTAATTTTATCTGATGATGGTTCAATTT
261 AAAATCTTTATTTCCTTTGAGAGCTATGAGTACGAGATTAATTTTATCTGATGATGGTTCAATTT
15791348 TGGCTGAATTGAGGGCTAGACCGTTATTCCTTCAGCAAATTCGGGAAGCACAAAAGAATGACAGT
326 TGGCTGAATTGAGGGCTAGACCGTTATTCCTTCAGCAAATTCGGGAAGCACAAAAGAATGACAGT
15791413 GAATTGCAAGCCAGGAGAGCTCAGTGTGAAGCAGGTGTTGATTCAGATTTTCGAATTAGATCAGA
391 GAATTGCAAGCCAGGAGAGCTCAGTGTGAAGCAGGTGTTGATTCAGATTTTCGAATTAGATCAGA
15791478 TGATTGTCTAATGTTCTAAGATAGGGTATGTGTACCGAGAAATGATGAGTTGATTCGGACCATTT
456 TGATTGTCTAATGTTCTAAGATAGGGTATGTGTACCGAGAAATGATGAGTTGATTCGGACCATTT
15791543 TATGTGAGGCACATAGTGGTGATTTGTTAGTTCATCCAGGTAGTGTGAAAATGTATAATGATTTC
521 TATGTGAGGCACATAGTGGTGATTTGTTAGTTCATCCAGGTAGTGTGAAAATGTATAATGATTTC
15791608 AAGAAATTGTATTGGTGGCCGGGCATGAAAAAGGATATCTCAGAATTTGTATCA
586 AAGAAATTGTATTGGTGGCCGGGCATGAAAAAGGATATCTCAGAATTTGTATCA
15791662 AAGTGTTTAA
Statistics
Matches: 636, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
641 636 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (641 bp):
CAACTGAAACCGCACGAGAAGAATTATCCAATGCATGATTTAGAATTGGCTACCATTATTTTTGC
TTTAAAAATTTGGCATCATTATCTGTATGGTGAGAAATGCTGAATCTTCACTGATCATAAGAGTT
TGAAGTATTTAATGAATAAAAAAGACTTGAATTTGAGACAATGAAGATGGCTCGAGCTAATAAAA
GATTATGAGCTAGTGATTGATTATCATCCTGGAAAAGCTAATGTTGTTGCTGATGCCTTGAGCAG
AAAATCTTTATTTCCTTTGAGAGCTATGAGTACGAGATTAATTTTATCTGATGATGGTTCAATTT
TGGCTGAATTGAGGGCTAGACCGTTATTCCTTCAGCAAATTCGGGAAGCACAAAAGAATGACAGT
GAATTGCAAGCCAGGAGAGCTCAGTGTGAAGCAGGTGTTGATTCAGATTTTCGAATTAGATCAGA
TGATTGTCTAATGTTCTAAGATAGGGTATGTGTACCGAGAAATGATGAGTTGATTCGGACCATTT
TATGTGAGGCACATAGTGGTGATTTGTTAGTTCATCCAGGTAGTGTGAAAATGTATAATGATTTC
AAGAAATTGTATTGGTGGCCGGGCATGAAAAAGGATATCTCAGAATTTGTATCAGG
Found at i:15796548 original size:22 final size:21
Alignment explanation
Indices: 15796518--15796561 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
15796508 TGATAAAATT
15796518 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
15796540 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
15796561 T
1 T
15796562 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:15798114 original size:10 final size:10
Alignment explanation
Indices: 15798099--15798139 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
15798089 TATGAACATG
15798099 ATTAATTTTA
1 ATTAATTTTA
15798109 ATTAATTTTATA
1 ATTAA-TTT-TA
*
15798121 ATTAATTTTG
1 ATTAATTTTA
15798131 ATTAATTTT
1 ATTAATTTT
15798140 GACTATTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 15 0.54
11 6 0.21
12 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
ATTAATTTTA
Found at i:15799259 original size:39 final size:39
Alignment explanation
Indices: 15799215--15799292 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
15799205 ATACTTAATC
15799215 AATGCTGTTTATTCTTGTAAGGTAGCTGAGGTTAATTTA
1 AATGCTGTTTATTCTTGTAAGGTAGCTGAGGTTAATTTA
15799254 AATGCTGTTTATTCTTGTAAGGTAGCTGAGGTTAATTTA
1 AATGCTGTTTATTCTTGTAAGGTAGCTGAGGTTAATTTA
15799293 GCATTGTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.44
Consensus pattern (39 bp):
AATGCTGTTTATTCTTGTAAGGTAGCTGAGGTTAATTTA
Found at i:15811746 original size:21 final size:22
Alignment explanation
Indices: 15811706--15811746 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15811696 AACGAAGTAA
* *
15811706 AATATTATTTAACTATATAAAC
1 AATATAATTTAACTAAATAAAC
15811728 AATATAATTT-ACTAAATAA
1 AATATAATTTAACTAAATAA
15811747 TTGCATGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
AATATAATTTAACTAAATAAAC
Found at i:15814645 original size:21 final size:21
Alignment explanation
Indices: 15814606--15814645 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15814596 AGGATGCACT
*
15814606 GAAACACGTAAGTGCTAAACA
1 GAAACACGTAAGAGCTAAACA
* *
15814627 GAAACCCGTAAGAGTTAAA
1 GAAACACGTAAGAGCTAAA
15814646 AGGGACCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (21 bp):
GAAACACGTAAGAGCTAAACA
Found at i:15814729 original size:21 final size:21
Alignment explanation
Indices: 15814669--15814731 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
15814659 GAGCTGAACA
* *
15814669 GAAACCCATAAGGGTTAATCT
1 GAAACCCAAAAGGGTTAAACT
* * * * *
15814690 GAAGCTCAGAAGAGCTAAACT
1 GAAACCCAAAAGGGTTAAACT
15814711 GAAACCCAAAAGGGTTAAACT
1 GAAACCCAAAAGGGTTAAACT
15814732 AAAAATCATA
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (21 bp):
GAAACCCAAAAGGGTTAAACT
Found at i:15820886 original size:28 final size:28
Alignment explanation
Indices: 15820846--15820925 Score: 160
Period size: 28 Copynumber: 2.9 Consensus size: 28
15820836 GAAAAACAAG
15820846 GGTTAGATCGGATCATACACATCACACT
1 GGTTAGATCGGATCATACACATCACACT
15820874 GGTTAGATCGGATCATACACATCACACT
1 GGTTAGATCGGATCATACACATCACACT
15820902 GGTTAGATCGGATCATACACATCA
1 GGTTAGATCGGATCATACACATCA
15820926 AACTATGACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (28 bp):
GGTTAGATCGGATCATACACATCACACT
Found at i:15826054 original size:45 final size:45
Alignment explanation
Indices: 15825997--15826087 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
15825987 GATTTTATAA
* *
15825997 TATATATATGCATGACTTAAACGAAGCTAAACCTGCTAATAATGG
1 TATACATATGCATGACTTAAACGAAGCTAAACCTACTAATAATGG
*
15826042 TATACATATGCATGACTTAAATGAAGCTAAACCTACTAATAATGG
1 TATACATATGCATGACTTAAACGAAGCTAAACCTACTAATAATGG
15826087 T
1 T
15826088 TAATTAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (45 bp):
TATACATATGCATGACTTAAACGAAGCTAAACCTACTAATAATGG
Found at i:15834518 original size:5 final size:5
Alignment explanation
Indices: 15834508--15834554 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
15834498 TGAAGTTTTC
* *
15834508 TCGAA TCGAA TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGA-A TCGAA -TCGAA TCGAA TCGAA TCGAA T
15834555 ATATTTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 2 0.06
5 28 0.78
6 6 0.17
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:15834948 original size:30 final size:31
Alignment explanation
Indices: 15834909--15834968 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
15834899 GGAGGTGGGA
*
15834909 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
*
15834940 TGGG-AGGGAGTAAAAATTTTAGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
15834969 TAAAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:15835275 original size:9 final size:9
Alignment explanation
Indices: 15835258--15835288 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15835248 TCGACTTGAT
15835258 TCGAATAAC
1 TCGAATAAC
*
15835267 TCGATTAAC
1 TCGAATAAC
15835276 TCGAATAAC
1 TCGAATAAC
15835285 TCGA
1 TCGA
15835289 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:15850561 original size:17 final size:18
Alignment explanation
Indices: 15850539--15850574 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15850529 CATTTTGGGC
15850539 CGTGTGGG-CCACACGGG
1 CGTGTGGGACCACACGGG
*
15850556 CGTGTGGGACCACATGGG
1 CGTGTGGGACCACACGGG
15850574 C
1 C
15850575 ATACAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.14, C:0.28, G:0.44, T:0.14
Consensus pattern (18 bp):
CGTGTGGGACCACACGGG
Found at i:15853342 original size:14 final size:16
Alignment explanation
Indices: 15853313--15853346 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
15853303 AGTACTAATG
15853313 ATTAATATACATTTTT
1 ATTAATATACATTTTT
15853329 ATTAA-ATA-ATTTTT
1 ATTAATATACATTTTT
15853343 ATTA
1 ATTA
15853347 TTGTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.56
15 3 0.17
16 5 0.28
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTAATATACATTTTT
Found at i:15856695 original size:11 final size:11
Alignment explanation
Indices: 15856679--15856707 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
15856669 CTCTAATATT
15856679 CTCTCAAATTC
1 CTCTCAAATTC
15856690 CTCTCAAATTC
1 CTCTCAAATTC
15856701 CTCTCAA
1 CTCTCAA
15856708 TTTTCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.34
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:15856749 original size:30 final size:26
Alignment explanation
Indices: 15856715--15856775 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
15856705 CAATTTTCTA
*
15856715 TTTAAAAGAGCTTTAATTTTTTAATTATTT
1 TTTAAAA-AGCTTTAA-ATTTT-ATT-TTT
*
15856745 TTTAAAAAGTTTTAAATTTTATTTTT
1 TTTAAAAAGCTTTAAATTTTATTTTT
15856771 TTTAA
1 TTTAA
15856776 TTTTTTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.28
27 3 0.10
28 4 0.14
29 7 0.24
30 7 0.24
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (26 bp):
TTTAAAAAGCTTTAAATTTTATTTTT
Found at i:15859935 original size:126 final size:125
Alignment explanation
Indices: 15859706--15859995 Score: 463
Period size: 126 Copynumber: 2.3 Consensus size: 125
15859696 CCAAACATGC
* *
15859706 GCTACTGTAGCAAAAGCGCGTCTAGTGGGAGCTTCTTTCAGTACTTCTGGTGACAAAGCATCCTG
1 GCTACTGTAGCAAAAGCGCGTCCAGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTG
* * * *
15859771 CTTAAAGCATTTTTGACACTATTTGGTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
66 CTTAAAACATTTTTGACACTATTTGCTCAGAAAAGTCTACTCGAAATTATTTTTTCAAGA
* *
15859831 GCTACTGTAGCAAAAGCGCGTCCAGGTGGGAGCTTTTTTCAGTACTTCTGCTGACAAAGCATCTT
1 GCTACTGTAGCAAAAGCGCGTCCA-GTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
*
15859896 GCTTAAAACGTTTTTGACACTATTTGCTCAGAAAAGTCTACTCGAAATTATTTTTTCAAGA
65 GCTTAAAACATTTTTGACACTATTTGCTCAGAAAAGTCTACTCGAAATTATTTTTTCAAGA
* *
15859957 GCTACTGTAGCAAAAGTGCATCCACGTGGGAGCTTCTTT
1 GCTACTGTAGCAAAAGCGCGTCCA-GTGGGAGCTTCTTT
15859996 AAATTAACAA
Statistics
Matches: 151, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
125 23 0.15
126 128 0.85
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (125 bp):
GCTACTGTAGCAAAAGCGCGTCCAGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCTG
CTTAAAACATTTTTGACACTATTTGCTCAGAAAAGTCTACTCGAAATTATTTTTTCAAGA
Found at i:15860176 original size:96 final size:94
Alignment explanation
Indices: 15860028--15860303 Score: 333
Period size: 95 Copynumber: 2.9 Consensus size: 94
15860018 AGTAACCCTA
*
15860028 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACACTAAACCTTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACC-TAATCTAAT
*
15860093 TTTATAAAAATTTATAATTAATTTACTCAAGT
64 TTTATAAAAA-TTATAATTAAATTACTCAAGT
* * * * *
15860125 AACCTTGAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACTCTAAACCCTAATCTAATT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAA-CCTAATCTAATT
* *
15860190 TTTTAAAAA-AATCAATTAAATTACTCAAGT
65 TTATAAAAATTAT-AATTAAATTACTCAAGT
* * ** * *
15860220 ATCCCTAAACCCTAATTTAATTT-ATTTTTTCTTAAAAACAATAAACACGAAACCTAATCCAATT
1 AACCCTAAACCCTAATTT-ATTTGATTTTTACTTAAAAACCCTAAACACTAAACCTAATCTAATT
15860284 TTGA-AAAAATTATAATTAAA
65 TT-ATAAAAATTATAATTAAA
15860304 AACCCTATAT
Statistics
Matches: 153, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
94 27 0.18
95 56 0.37
96 47 0.31
97 23 0.15
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (94 bp):
AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCTAATCTAATTT
TATAAAAATTATAATTAAATTACTCAAGT
Found at i:15862602 original size:19 final size:22
Alignment explanation
Indices: 15862571--15862618 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 22
15862561 TAAATTGTTG
15862571 AATTTTT-ATAAA-TATTTT-A
1 AATTTTTGATAAATTATTTTGA
*
15862590 AATTTTTGA-AAATTATTTTGT
1 AATTTTTGATAAATTATTTTGA
15862611 AATTTTTG
1 AATTTTTG
15862619 TTAAGAGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (22 bp):
AATTTTTGATAAATTATTTTGA
Found at i:15863220 original size:10 final size:10
Alignment explanation
Indices: 15863192--15863221 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
15863182 AGACTTGAAA
15863192 TAAATATTAT
1 TAAATATTAT
15863202 TAAAT-TTAT
1 TAAATATTAT
15863211 TAAATATTAT
1 TAAATATTAT
15863221 T
1 T
15863222 TACAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TAAATATTAT
Found at i:15863291 original size:21 final size:21
Alignment explanation
Indices: 15863248--15863294 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
15863238 CTCTTTCTAG
* * **
15863248 TTTTAGGTTTTAGGTTTTGGA
1 TTTTAGATTTTAGGGTTAAGA
15863269 TTTTAGATTTTAGGGTTAAGA
1 TTTTAGATTTTAGGGTTAAGA
15863290 TTTTA
1 TTTTA
15863295 AGTTTCAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.55
Consensus pattern (21 bp):
TTTTAGATTTTAGGGTTAAGA
Found at i:15864634 original size:22 final size:21
Alignment explanation
Indices: 15864602--15864651 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
15864592 ATCTAAACAT
15864602 AAAAAA-TATCTATTTTTAAA
1 AAAAAATTATCTATTTTTAAA
*
15864622 AAAAAATTAATCTATTTTTCAA
1 AAAAAATT-ATCTATTTTTAAA
*
15864644 AAATAATT
1 AAAAAATT
15864652 TTTCAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 6 0.23
21 1 0.04
22 19 0.73
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAAATTATCTATTTTTAAA
Found at i:15866135 original size:43 final size:43
Alignment explanation
Indices: 15866083--15866281 Score: 260
Period size: 43 Copynumber: 4.7 Consensus size: 43
15866073 TTTTAGAAAT
*
15866083 AAACGCCGCTATAGA-CTATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATC-AAGACCTTTAGCGGCGCTTTTCCCAC
* ** *
15866126 AAATGCCGCTATAGATCGGGACCTTTAGCGGCGCTTTT-GCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
**
15866168 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
** * *
15866211 AAACGCCGCTATATCTCAAAACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
*
15866254 AAACGCCGCTATAGAACAA-ACCTTTAGC
1 AAACGCCGCTATAGATCAAGACCTTTAGC
15866282 AACGCTTCTC
Statistics
Matches: 137, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 47 0.34
43 89 0.65
44 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:15866212 original size:85 final size:85
Alignment explanation
Indices: 15866083--15866281 Score: 258
Period size: 85 Copynumber: 2.3 Consensus size: 85
15866073 TTTTAGAAAT
* * ***
15866083 AAACGCCGCTATAGACTATGACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTATAGATCGGGAC
1 AAACGCCGCTATAGAC-AAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAAAC
* *
15866148 CTTTAGCGGCGCTTTT-GCAC
65 CTTTAGCGGCACTTTTCCCAC
** **
15866168 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTATATCTCAAAAC
1 AAACGCCGCTATAGA-CAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAAAC
15866233 CTTTAGCGGCACTTTTCCCAC
65 CTTTAGCGGCACTTTTCCCAC
15866254 AAACGCCGCTATAGAACAA-ACCTTTAGC
1 AAACGCCGCTATAG-ACAAGACCTTTAGC
15866282 AACGCTTCTC
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
85 78 0.78
86 21 0.21
87 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (85 bp):
AAACGCCGCTATAGACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAAACC
TTTAGCGGCACTTTTCCCAC
Found at i:15870490 original size:41 final size:41
Alignment explanation
Indices: 15870445--15870667 Score: 313
Period size: 41 Copynumber: 5.4 Consensus size: 41
15870435 GCACTTTTTC
15870445 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
** *
15870486 AAAAACGTTGCTAAAACCCCGAGCATTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
* * * * *
15870527 GAAAACGCCGCTAAAGCCCCAAGCATTAGCGGCACTTTTTC
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
* *
15870568 AAAAACGCCGCTAAAACCCCGAGCATTAGCTGCGCTTCTTG
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
* * *
15870609 AAAAACACCGCTAAAGCCCCGAGCATTAGCGACGCTT-TCTC
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCT-TG
15870650 AAAAACGCCGCTAAAGCC
1 AAAAACGCCGCTAAAGCC
15870668 TCGAAAGGTC
Statistics
Matches: 157, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 1 0.01
41 156 0.99
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.18
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTG
Found at i:15870655 original size:123 final size:123
Alignment explanation
Indices: 15870432--15870667 Score: 375
Period size: 123 Copynumber: 1.9 Consensus size: 123
15870422 AAATGTTTTT
* ***
15870432 GCGGCACTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTGAAAAACGTTGC
1 GCGGCACTTTTTCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTCTTGAAAAACACCGC
* **
15870497 TAAAACCCCGAGCATTAGCGGCGCTTCTTGGAAAACGCCGCTAAAGCCCCAAGCATTA
66 TAAAACCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCCAAGCATTA
*
15870555 GCGGCACTTTTTCAAAAACGCCGCTAAAACCCCGAGCATTAGCTGCGCTTCTTGAAAAACACCGC
1 GCGGCACTTTTTCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTCTTGAAAAACACCGC
*
15870620 TAAAGCCCCGAGCATTAGCGACGCTT-TCTCAAAAACGCCGCTAAAGCC
66 TAAAACCCCGAGCATTAGCGACGCTTCT-TCAAAAACGCCGCTAAAGCC
15870668 TCGAAAGGTC
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 1 0.01
123 102 0.99
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (123 bp):
GCGGCACTTTTTCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTCTTGAAAAACACCGC
TAAAACCCCGAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCCAAGCATTA
Found at i:15873099 original size:16 final size:16
Alignment explanation
Indices: 15873080--15873110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15873070 ATGAATGAAT
*
15873080 GTGTAAATGTGATAAC
1 GTGTAAATATGATAAC
15873096 GTGTAAATATGATAA
1 GTGTAAATATGATAA
15873111 TTGGATATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (16 bp):
GTGTAAATATGATAAC
Found at i:15877371 original size:63 final size:63
Alignment explanation
Indices: 15877191--15877393 Score: 198
Period size: 63 Copynumber: 3.2 Consensus size: 63
15877181 GGCTCCACAC
* * * * * *
15877191 GGCCT-GACACATGCCCGTGTGCCTTGTCC-GTGTGTCTCAAATCTGAAGTCAGTGAGTTACAT
1 GGCCTAGACACACGCCCGTGTGTCTTG-CCTGTATGACTCAAATCTGAAGTCAGAGAGTTACAA
* * * * *
15877253 GGCCTGGACACACGCCCTTGTGTCTTACTCGTGTA--ACTCCAATCTGAAGTTAGAGAGTTACAA
1 GGCCTAGACACACGCCCGTGTGTCTTGC-C-TGTATGACTCAAATCTGAAGTCAGAGAGTTACAA
* * * *
15877316 GGCTTAGACACACGCCCGTGTGTCTTGCCTGTATGACTCAAATTTGAAATCAGAGAGTTACAC
1 GGCCTAGACACACGCCCGTGTGTCTTGCCTGTATGACTCAAATCTGAAGTCAGAGAGTTACAA
* *
15877379 GGGCTAGGCACACGC
1 GGCCTAGACACACGC
15877394 ATGTTTTTCG
Statistics
Matches: 113, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
61 4 0.04
62 7 0.06
63 100 0.88
65 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (63 bp):
GGCCTAGACACACGCCCGTGTGTCTTGCCTGTATGACTCAAATCTGAAGTCAGAGAGTTACAA
Found at i:15883671 original size:12 final size:12
Alignment explanation
Indices: 15883654--15883678 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15883644 TATAAGTGTC
15883654 ATAAAATTTATT
1 ATAAAATTTATT
15883666 ATAAAATTTATT
1 ATAAAATTTATT
15883678 A
1 A
15883679 AATCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAAAATTTATT
Found at i:15887033 original size:17 final size:17
Alignment explanation
Indices: 15887011--15887045 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15887001 TTTTTTCACT
15887011 ATTTTATT-TTATTGTTA
1 ATTTTATTATTATT-TTA
15887028 ATTTTATTATTATTTTA
1 ATTTTATTATTATTTTA
15887045 A
1 A
15887046 AAGAATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
ATTTTATTATTATTTTA
Found at i:15895686 original size:61 final size:61
Alignment explanation
Indices: 15895586--15895748 Score: 247
Period size: 61 Copynumber: 2.7 Consensus size: 61
15895576 TTGCGCCACG
15895586 AAGGCATTCATTTACATTTAGTACTCGCCAGAAAA-GCTTTCATGTCCAGAGTTTTGCTACA
1 AAGGCATTCATTTACATTTAGTACTCGCCA-AAAAGGCTTTCATGTCCAGAGTTTTGCTACA
* * * * * *
15895647 AAGGCGTTCATTTACATTTAGTACTCTCCACAAAGGCTTTCTTGTCTAGAGTTTTGTTACA
1 AAGGCATTCATTTACATTTAGTACTCGCCAAAAAGGCTTTCATGTCCAGAGTTTTGCTACA
*
15895708 AAGGCATTCATTTACATTCAGTACTCGCCAAAAAGGCTTTC
1 AAGGCATTCATTTACATTTAGTACTCGCCAAAAAGGCTTTC
15895749 CTTTCTTGGT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
60 3 0.03
61 88 0.97
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (61 bp):
AAGGCATTCATTTACATTTAGTACTCGCCAAAAAGGCTTTCATGTCCAGAGTTTTGCTACA
Found at i:15895961 original size:53 final size:53
Alignment explanation
Indices: 15895874--15896013 Score: 199
Period size: 53 Copynumber: 2.6 Consensus size: 53
15895864 TTCCCAAAAA
** * *
15895874 CCACCAGTTACAATCTTACATGATATGATTTTCTTTCCATATGATGTCATAAC
1 CCACCAGTTACGGTCTTACACGATATGATCTTCTTTCCATATGATGTCATAAC
* *
15895927 CCACCAGTTACGGTTTTACACGATATGGTCTTCTTTCCATATGATGTCATAAC
1 CCACCAGTTACGGTCTTACACGATATGATCTTCTTTCCATATGATGTCATAAC
* *
15895980 CCACCAATTACGGTCTTACACGATAAGATTCTTC
1 CCACCAGTTACGGTCTTACACGATATGA-TCTTC
15896014 AGAGCCATGA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
53 71 0.93
54 5 0.07
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (53 bp):
CCACCAGTTACGGTCTTACACGATATGATCTTCTTTCCATATGATGTCATAAC
Found at i:15899427 original size:87 final size:87
Alignment explanation
Indices: 15899278--15899481 Score: 257
Period size: 87 Copynumber: 2.3 Consensus size: 87
15899268 CAGTTTAATA
* * * * *
15899278 ATCTGCAAACACTGATGGTTTATCCACGAATTTACTAGCATCTTTTATCTACAAATACGTTGTGT
1 ATCTGCAAACACTGATGGTTTATCCACAAACTTACTAGCAGCTCTTATCTACAAATACGTTGTGC
* *
15899343 ATTCATAACCTACTGGCAGTTT
66 ATCCATAACCTACTGGCAGTTC
* * * * * *
15899365 ATTTGCAAACACTGATGGTTTATCCATAAACTTA-TTGCCAGCTCTTATTTGCAAATATGTTGTG
1 ATCTGCAAACACTGATGGTTTATCCACAAACTTACTAG-CAGCTCTTATCTACAAATACGTTGTG
15899429 CATCCATAACCTACTGGCAGTTC
65 CATCCATAACCTACTGGCAGTTC
* *
15899452 ATCTGCAAACACTGGTGGTTCATCCACAAA
1 ATCTGCAAACACTGATGGTTTATCCACAAA
15899482 TTAGAGTGTC
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
86 2 0.02
87 97 0.98
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (87 bp):
ATCTGCAAACACTGATGGTTTATCCACAAACTTACTAGCAGCTCTTATCTACAAATACGTTGTGC
ATCCATAACCTACTGGCAGTTC
Found at i:15907090 original size:10 final size:10
Alignment explanation
Indices: 15907075--15907101 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
15907065 CATCCATTTT
15907075 CGAAACTGAA
1 CGAAACTGAA
15907085 CGAAACTGAA
1 CGAAACTGAA
15907095 CGAAACT
1 CGAAACT
15907102 TCCTCGTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (10 bp):
CGAAACTGAA
Found at i:15908519 original size:21 final size:21
Alignment explanation
Indices: 15908495--15908536 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15908485 GCAAGTTAAC
* *
15908495 GTTAATTGGCTACATCAGCTA
1 GTTAACTGGCCACATCAGCTA
*
15908516 GTTAACTGGCCACCTCAGCTA
1 GTTAACTGGCCACATCAGCTA
15908537 TCCCGTTGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (21 bp):
GTTAACTGGCCACATCAGCTA
Found at i:15911030 original size:28 final size:29
Alignment explanation
Indices: 15910991--15911055 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
15910981 TAAAAATTCA
* * *
15910991 AAAAATTTAT-AAAAAGTGT-TTAAAATTT
1 AAAAATTAATAAAAAAG-GTATAAAAATAT
15911019 AAAAATTAATAAAAAAGGTATAAAAATAT
1 AAAAATTAATAAAAAAGGTATAAAAATAT
15911048 AAAAATTA
1 AAAAATTA
15911056 TTTTTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (29 bp):
AAAAATTAATAAAAAAGGTATAAAAATAT
Found at i:15922108 original size:18 final size:18
Alignment explanation
Indices: 15922087--15922147 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
15922077 ATTTAAATTT
*
15922087 TAATTATTTATAAATGTA
1 TAATTATTTATAAATGTG
*
15922105 TAATTATTAATTAAAT-TG
1 TAATTATTTA-TAAATGTG
* *
15922123 TGATTATTTTTAAATGTG
1 TAATTATTTATAAATGTG
15922141 TAATTAT
1 TAATTAT
15922148 CATAACTTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 5 0.14
18 25 0.71
19 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.52
Consensus pattern (18 bp):
TAATTATTTATAAATGTG
Found at i:15922119 original size:36 final size:36
Alignment explanation
Indices: 15922079--15922147 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
15922069 TAATTGTAAT
*
15922079 TTAAATTTTAATTATTTATAAATGTATAATTATTAA
1 TTAAATTGTAATTATTTATAAATGTATAATTATTAA
* * *
15922115 TTAAATTGTGATTATTTTTAAATGTGTAATTAT
1 TTAAATTGTAATTATTTATAAATGTATAATTAT
15922148 CATAACTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (36 bp):
TTAAATTGTAATTATTTATAAATGTATAATTATTAA
Found at i:15927007 original size:41 final size:41
Alignment explanation
Indices: 15926955--15927176 Score: 286
Period size: 41 Copynumber: 5.4 Consensus size: 41
15926945 GTACATCCAA
* * *
15926955 GGGTACTGAAGTATAAACAGAGGCACGTATGTGCAATTCAG
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
* * *
15926996 GGGTACCGAAGTACAAACGGGGGCACGTATGTGCAATTTAA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
15927037 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAA-TCTAG
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTC-AG
* * * *
15927078 GGGTACTGAAGTACAAACAAGGGCATGTATGTGCAATTCAT
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
* * *
15927119 GGGTATCAAAGTACAAATAGGGGCACGTATGTGCAATT-ATG
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCA-G
*
15927160 GGGTACCAAAGTACAAA
1 GGGTACCGAAGTACAAA
15927177 ATAATTAAAG
Statistics
Matches: 157, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
40 2 0.01
41 153 0.97
42 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (41 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAG
Found at i:15927174 original size:123 final size:123
Alignment explanation
Indices: 15926955--15927176 Score: 331
Period size: 123 Copynumber: 1.8 Consensus size: 123
15926945 GTACATCCAA
* * *
15926955 GGGTACTGAAGTATAAACAGAGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAACGGGGGC
1 GGGTACTGAAGTACAAACAGAGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGC
*
15927020 ACGTATGTGCAATTTAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCTAG
66 ACGTATGTGCAATTTAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCTAG
* * * *
15927078 GGGTACTGAAGTACAAACA-AGGGCATGTATGTGCAATTCATGGGTATCAAAGTACAAATAGGGG
1 GGGTACTGAAGTACAAACAGA-GGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGG
*
15927142 CACGTATGTGCAA-TTATGGGGTACCAAAGTACAAA
65 CACGTATGTGCAATTTA-AGGGTACCAAAGTACAAA
15927177 ATAATTAAAG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
122 4 0.05
123 84 0.95
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (123 bp):
GGGTACTGAAGTACAAACAGAGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGC
ACGTATGTGCAATTTAAGGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCTAG
Found at i:15929119 original size:27 final size:27
Alignment explanation
Indices: 15929079--15929383 Score: 142
Period size: 27 Copynumber: 11.3 Consensus size: 27
15929069 AAGGGAGATC
* *
15929079 GCCACAAAGGCTTTCGTTTCGTGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
* * *
15929106 GCCACAAAGACTTTCTTTTCATGGTTT
1 GCCACAAAGGCTTTCATTTCATGATTT
*
15929133 TCCACAAAGGCTTTCATTTCAT-ATTTT
1 GCCACAAAGGCTTTCATTTCATGA-TTT
15929160 GCCACAAAGGCTATTC-TTTCAT-A-TT
1 GCCACAAAGGCT-TTCATTTCATGATTT
* *
15929185 ACATCACAAAGGCTATT-ATTTCAT-ATTAC
1 GC--CACAAAGGCT-TTCATTTCATGATT-T
* *
15929214 GCTACAAAGGCTTTTC-TTTCAT-ATTAC
1 GCCACAAAGGC-TTTCATTTCATGATT-T
* *
15929241 GCTACAAAGG-TTATTATTTCAT-ATTAT
1 GCCACAAAGGCTT-TCATTTCATGATT-T
* *
15929268 GTCACAAAGGCTTTTCA-TACAT-ATTAT
1 GCCACAAAGGC-TTTCATTTCATGATT-T
* *
15929295 GCCACAAAGGTTTTTC-TTTCAT-ATTAC
1 GCCACAAAGG-CTTTCATTTCATGATT-T
* *
15929322 GTCACAAAGGCTATT-ATTTCAT-ATTAC
1 GCCACAAAGGCT-TTCATTTCATGATT-T
* *
15929349 GCCACAAATGCTTTTC-TTACAT-ATTAT
1 GCCACAAAGGC-TTTCATTTCATGATT-T
15929376 GCCACAAA
1 GCCACAAA
15929384 TGATTTTCTT
Statistics
Matches: 230, Mismatches: 29, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
25 5 0.02
26 2 0.01
27 212 0.92
28 8 0.03
29 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.38
Consensus pattern (27 bp):
GCCACAAAGGCTTTCATTTCATGATTT
Found at i:15929180 original size:54 final size:52
Alignment explanation
Indices: 15929080--15929447 Score: 273
Period size: 54 Copynumber: 6.8 Consensus size: 52
15929070 AGGGAGATCG
* * * * *
15929080 CCACAAAGGCTTTCGTTTCGTGATT-TGCCACAAAGACT-TTCTTTTCATGGTTTT
1 CCACAAAGGCTTTCATTTCAT-ATTATGCCACAAAGGCTATTC-TTTCAT--ATTA
*
15929134 CCACAAAGGCTTTCATTTCATATTTTGCCACAAAGGCTATTCTTTCATATTA
1 CCACAAAGGCTTTCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
* * *
15929186 CATCACAAAGGCTATT-ATTTCATATTACGCTACAAAGGCTTTTCTTTCATATTA
1 C--CACAAAGGCT-TTCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
* * * * *
15929240 CGCTACAAAGG-TTATTATTTCATATTATGTCACAAAGGCTTTTCATACATATTA
1 C-C-ACAAAGGCTT-TCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
* * * *
15929294 TGCCACAAAGGTTTTTC-TTTCATATTACGTCACAAAGGCTATTATTTCATATTA
1 --CCACAAAGG-CTTTCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
* * * * * *
15929348 CGCCACAAATGCTTTTC-TTACATATTATGCCACAAATGATTTTCTTACATATTA
1 --CCACAAAGGC-TTTCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
* * *
15929402 CGCCACAAAGACTTTTC-TTTCATATTACGCCATAAAGGCTATTCTT
1 --CCACAAAGGC-TTTCATTTCATATTATGCCACAAAGGCTATTCTT
15929448 ATCTGTCGTG
Statistics
Matches: 261, Mismatches: 40, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
52 4 0.02
53 6 0.02
54 241 0.92
55 7 0.03
56 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (52 bp):
CCACAAAGGCTTTCATTTCATATTATGCCACAAAGGCTATTCTTTCATATTA
Found at i:15929384 original size:27 final size:27
Alignment explanation
Indices: 15929134--15929447 Score: 344
Period size: 27 Copynumber: 11.6 Consensus size: 27
15929124 TCATGGTTTT
**
15929134 CCACAAAGGC-TTTCATTTCATATTTTG
1 CCACAAAGGCTTTTC-TTTCATATTACG
* *
15929161 CCACAAAGGCTATTCTTTCATATTACA
1 CCACAAAGGCTTTTCTTTCATATTACG
* * *
15929188 TCACAAAGGCTATTATTTCATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
*
15929215 CTACAAAGGCTTTTCTTTCATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
* * *
15929242 CTACAAAGG-TTATTATTTCATATTATG
1 CCACAAAGGCTT-TTCTTTCATATTACG
* * * *
15929269 TCACAAAGGCTTTTCATACATATTATG
1 CCACAAAGGCTTTTCTTTCATATTACG
*
15929296 CCACAAAGGTTTTTCTTTCATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
* * *
15929323 TCACAAAGGCTATTATTTCATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
* * *
15929350 CCACAAATGCTTTTCTTACATATTATG
1 CCACAAAGGCTTTTCTTTCATATTACG
* * *
15929377 CCACAAATGATTTTCTTACATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
*
15929404 CCACAAAGACTTTTCTTTCATATTACG
1 CCACAAAGGCTTTTCTTTCATATTACG
* *
15929431 CCATAAAGGCTATTCTT
1 CCACAAAGGCTTTTCTT
15929448 ATCTGTCGTG
Statistics
Matches: 242, Mismatches: 42, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 235 0.97
28 5 0.02
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.39
Consensus pattern (27 bp):
CCACAAAGGCTTTTCTTTCATATTACG
Found at i:15929553 original size:14 final size:14
Alignment explanation
Indices: 15929534--15929561 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15929524 GCGGAGAACC
15929534 CCATTAAGTAATCA
1 CCATTAAGTAATCA
15929548 CCATTAAGTAATCA
1 CCATTAAGTAATCA
15929562 TTGTCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (14 bp):
CCATTAAGTAATCA
Found at i:15936026 original size:5 final size:5
Alignment explanation
Indices: 15936016--15936059 Score: 70
Period size: 5 Copynumber: 8.8 Consensus size: 5
15936006 CCTAGGATGA
* *
15936016 GAATT GAATT GAATT GAATA GGATT GAATT GAATT GAATT GAAT
1 GAATT GAATT GAATT GAATT GAATT GAATT GAATT GAATT GAAT
15936060 AGGAATTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (5 bp):
GAATT
Found at i:15936046 original size:25 final size:25
Alignment explanation
Indices: 15936016--15936063 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
15936006 CCTAGGATGA
15936016 GAATTGAATTGAATTGAATAGGATT
1 GAATTGAATTGAATTGAATAGGATT
15936041 GAATTGAATTGAATTGAATAGGA
1 GAATTGAATTGAATTGAATAGGA
15936064 ATTGTACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (25 bp):
GAATTGAATTGAATTGAATAGGATT
Found at i:15936416 original size:25 final size:25
Alignment explanation
Indices: 15936358--15936408 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
15936348 TTATCCCTCT
*
15936358 CAAGCTTCCCGTTATGTGGTTCTTG
1 CAAGCTTCCCGTTATATGGTTCTTG
*
15936383 CAAGCTTCCCGTTGTATGGTTCTTG
1 CAAGCTTCCCGTTATATGGTTCTTG
15936408 C
1 C
15936409 GTGCTTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (25 bp):
CAAGCTTCCCGTTATATGGTTCTTG
Found at i:15936523 original size:26 final size:26
Alignment explanation
Indices: 15936488--15936555 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
15936478 GCAGCTCTTA
* *
15936488 TGAGCATCCCATTATATGGCTCTTCG
1 TGAGCTTCCCATTATAAGGCTCTTCG
*
15936514 TGAGCTTCCCGATTA-AAGGCTCTTTG
1 TGAGCTTCCC-ATTATAAGGCTCTTCG
*
15936540 TGAGCTTCCCAATATA
1 TGAGCTTCCCATTATA
15936556 GCTAGCTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.08
26 29 0.81
27 4 0.11
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCATTATAAGGCTCTTCG
Found at i:15936633 original size:24 final size:23
Alignment explanation
Indices: 15936578--15936667 Score: 67
Period size: 24 Copynumber: 3.8 Consensus size: 23
15936568 TTCCCAATAA
* * *
15936578 ATGGCTATCCAGAGCTTCCCGTT
1 ATGGCTCTTCAGAGCTTCCTGTT
* *
15936601 AATGACTCTTCAGAGCTACCTGTT
1 -ATGGCTCTTCAGAGCTTCCTGTT
*
15936625 ATTGGCTC-TCATGATCTTCCTGATT
1 A-TGGCTCTTCA-GAGCTTCCTG-TT
15936650 ATGGCTCTT-ATGAGCTTC
1 ATGGCTCTTCA-GAGCTTC
15936668 ACGTTATACA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
23 4 0.08
24 45 0.85
25 4 0.08
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (23 bp):
ATGGCTCTTCAGAGCTTCCTGTT
Found at i:15944336 original size:24 final size:24
Alignment explanation
Indices: 15944253--15944336 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
15944243 ATCGCTTGAA
* * *
15944253 CTTCCCGATATATGGCTATCCAGAG
1 CTTCCCGTTAT-TGGCTCTGCAGAG
* *
15944278 CTTCCCGTTAATGGCTCTTCAGAG
1 CTTCCCGTTATTGGCTCTGCAGAG
*
15944302 CTACCCGTTATTGGCTC-GCATGAG
1 CTTCCCGTTATTGGCTCTGCA-GAG
15944326 CTTCCCGTTAT
1 CTTCCCGTTAT
15944337 ACAGCCTGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 2 0.04
24 39 0.78
25 9 0.18
ACGTcount: A:0.18, C:0.30, G:0.20, T:0.32
Consensus pattern (24 bp):
CTTCCCGTTATTGGCTCTGCAGAG
Found at i:15944390 original size:25 final size:25
Alignment explanation
Indices: 15944193--15944392 Score: 94
Period size: 25 Copynumber: 8.1 Consensus size: 25
15944183 GCACACTGCA
*
15944193 GCTCTTATGAGCATCCCATTATATG
1 GCTCTTATGAGCTTCCCATTATATG
*
15944218 GCTCTTTGTGAGCTTCCCA--ATATG
1 GCTC-TTATGAGCTTCCCATTATATG
* * *
15944242 GATCGCT-TGAACTTCCCGA-TATATG
1 GCTC-TTATGAGCTTCCC-ATTATATG
* * *
15944267 GCTATCCA-GAGCTTCCCGTTA-ATG
1 GCTCT-TATGAGCTTCCCATTATATG
* *
15944291 GCTCTTCA-GAGCTACCCGTTAT-TG
1 GCTCTT-ATGAGCTTCCCATTATATG
** * **
15944315 GCTCGCATGAGCTTCCCGTTATACA
1 GCTCTTATGAGCTTCCCATTATATG
* * * * *
15944340 GC-CTGGATAAGCTTCTCGTTACATG
1 GCTCT-TATGAGCTTCCCATTATATG
*
15944365 GCTCATATGAGCTTCCCATTATATG
1 GCTCTTATGAGCTTCCCATTATATG
15944390 GCT
1 GCT
15944393 TGAGAGAGGA
Statistics
Matches: 130, Mismatches: 33, Indels: 24
0.70 0.18 0.13
Matches are distributed among these distances:
23 10 0.08
24 50 0.38
25 57 0.44
26 13 0.10
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
GCTCTTATGAGCTTCCCATTATATG
Found at i:15947874 original size:16 final size:18
Alignment explanation
Indices: 15947853--15947892 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
15947843 CATCATGACT
15947853 ACAACATC-TTG-TCATC
1 ACAACATCATTGCTCATC
15947869 ACAACATCGATTGCTCATC
1 ACAACATC-ATTGCTCATC
15947888 ACAAC
1 ACAAC
15947893 GTTAAAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 3 0.14
19 10 0.48
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25
Consensus pattern (18 bp):
ACAACATCATTGCTCATC
Found at i:15953819 original size:23 final size:23
Alignment explanation
Indices: 15953768--15953820 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
15953758 TGATTTAAAC
*
15953768 AAATACTCATATTTATATAATTA
1 AAATATTCATATTTATATAATTA
*
15953791 AAATATTCATATTT-TATACTATA
1 AAATATTCATATTTATATAAT-TA
15953814 AAATATT
1 AAATATT
15953821 TATTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 5 0.19
23 22 0.81
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATATTCATATTTATATAATTA
Found at i:15953925 original size:15 final size:16
Alignment explanation
Indices: 15953905--15953934 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15953895 AATTTAAACT
15953905 TTAAAA-TTATTATTG
1 TTAAAATTTATTATTG
15953920 TTAAAATTTATTATT
1 TTAAAATTTATTATT
15953935 AATATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTG
Found at i:15953970 original size:13 final size:13
Alignment explanation
Indices: 15953954--15954004 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
15953944 TTTTAAAATT
*
15953954 AAATAATTTATTA
1 AAATAATATATTA
15953967 AAATAATATATTA
1 AAATAATATATTA
* *
15953980 TATTAATCATATT-
1 AAATAAT-ATATTA
15953993 -AATAATATATTA
1 AAATAATATATTA
15954005 TATGATTAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 5 0.16
12 5 0.16
13 17 0.53
14 5 0.16
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (13 bp):
AAATAATATATTA
Found at i:15955893 original size:19 final size:19
Alignment explanation
Indices: 15955847--15955902 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
15955837 AATCTTCAAG
15955847 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
15955866 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
15955887 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
15955903 AGATCTGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15960708 original size:120 final size:120
Alignment explanation
Indices: 15960506--15960950 Score: 829
Period size: 120 Copynumber: 3.7 Consensus size: 120
15960496 TGATTTTATT
*
15960506 AAATTCATATAAGAATATTTAATATTAAGAATTGTATTAAATTATATATTTTTATTAAATTATAT
1 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
**
15960571 TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATTTTA-GA
66 TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA-TAAAGGA
15960626 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
1 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
15960691 TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATAAAGGA
66 TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATAAAGGA
15960746 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
1 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
*
15960811 TTAATAATAATTATGTTAAATTGTATTTTATAGTATTATATATTATGATAAAGGA
66 TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATAAAGGA
15960866 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
1 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
*
15960931 TTAATAATAAATATGTTAAA
66 TTAATAATAATTATGTTAAA
15960951 ATATGATTAA
Statistics
Matches: 319, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
119 2 0.01
120 317 0.99
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.49
Consensus pattern (120 bp):
AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATAT
TTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGATAAAGGA
Found at i:15963567 original size:50 final size:50
Alignment explanation
Indices: 15963453--15963595 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 50
15963443 GATAATAACA
* ** *
15963453 TGCCAAAGCCATGCCCCAAACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
15963504 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
15963554 TGCCAACGCCATGTCCCAGACTTGGTCTTACATGGGACCTCT
1 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
15963596 TTACCCAAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 46 0.59
51 32 0.41
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
Done.