Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 69 of 141
Found at i:20127861 original size:35 final size:33
Alignment explanation
Indices: 20127821--20127905 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 33
20127811 ATATCAATAA
* *
20127821 TAAATAATTTAATCATATTTAAACATATTTATTAT
1 TAAATAATTTAATCA-ATTTAAA-ATAATAATTAT
*
20127856 TAAATATATTATAATTAATTTAAAATAATAATTAT
1 TAAATA-ATT-TAATCAATTTAAAATAATAATTAT
20127891 TAAATATAATTTAAT
1 T-AA-ATAATTTAAT
20127906 AATAATATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
35 20 0.47
36 15 0.35
37 8 0.19
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (33 bp):
TAAATAATTTAATCAATTTAAAATAATAATTAT
Found at i:20127864 original size:16 final size:16
Alignment explanation
Indices: 20127839--20127903 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 16
20127829 TTAATCATAT
*
20127839 TTAAACATATTTATTA
1 TTAAATATATTTATTA
20127855 TTAAATATATTATAATTAA
1 TTAAATATATT-T-ATT-A
* *
20127874 TTTAAA-ATAATAATTA
1 -TTAAATATATTTATTA
20127890 TTAAATATAATTTA
1 TTAAATAT-ATTTA
20127904 ATAATAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
15 5 0.13
16 13 0.34
17 7 0.18
18 3 0.08
19 5 0.13
20 5 0.13
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAATATATTTATTA
Found at i:20127882 original size:21 final size:21
Alignment explanation
Indices: 20127857--20127919 Score: 56
Period size: 26 Copynumber: 2.7 Consensus size: 21
20127847 ATTTATTATT
20127857 AAATATATTATAATTAATTTA
1 AAATATATTATAATTAATTTA
20127878 AAATAATAATTATTAAATATAATTTA
1 AAAT-AT-ATTA-T-AAT-TAATTTA
20127904 ATAATA-ATATATAATT
1 A-AATATAT-TATAATT
20127920 TCATAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
21 4 0.11
22 3 0.09
23 7 0.20
24 4 0.11
25 5 0.14
26 9 0.26
27 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATATATTATAATTAATTTA
Found at i:20127891 original size:26 final size:27
Alignment explanation
Indices: 20127862--20127912 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
20127852 TTATTAAATA
20127862 TATTATAAT-TAATTTAA-AATAATAAT
1 TATTA-AATATAATTTAATAATAATAAT
20127888 TATTAAATATAATTTAATAATAATA
1 TATTAAATATAATTTAATAATAATA
20127913 TATAATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 3 0.13
26 13 0.57
27 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
TATTAAATATAATTTAATAATAATAAT
Found at i:20127961 original size:10 final size:9
Alignment explanation
Indices: 20127946--20128011 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 9
20127936 AATAAATTTT
20127946 TTTATATGAA
1 TTTATAT-AA
20127956 TTTATATAA
1 TTTATATAA
*
20127965 TTTAAAATAA
1 TTT-ATATAA
20127975 -TTA-AT-A
1 TTTATATAA
20127981 TGTTATATAA
1 T-TTATATAA
20127991 TTTA-ATAA
1 TTTATATAA
*
20127999 TGATATATAA
1 T-TTATATAA
20128009 TTT
1 TTT
20128012 CATAAAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 9 0.20
9 15 0.33
10 19 0.41
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (9 bp):
TTTATATAA
Found at i:20127962 original size:47 final size:47
Alignment explanation
Indices: 20127911--20128142 Score: 175
Period size: 44 Copynumber: 5.0 Consensus size: 47
20127901 TTAATAATAA
* *
20127911 TATATAATTTCATAAAATTCTTGATAATAAATTTTTTTATATGAATT
1 TATATAATTTCATAAAATTATTGATAATAAATTTTCTTATATGAATT
* * **
20127958 TATATAATTT-AAAATAATTAATATG-TTATATAA-TTTAATA-ATG-A--
1 TATATAATTTCATAA-AATT-AT-TGATAATA-AATTTTCTTATATGAATT
20128002 TATATAATTTCATAAAATTATTGATAATAAATTTTCTTATATGAATT
1 TATATAATTTCATAAAATTATTGATAATAAATTTTCTTATATGAATT
* * * * *
20128049 TATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGA
1 TATATAATTTCATAAAATTATTGATAATAAAT-T-TTCTTATATGAAT-T
* * *
20128093 TATATAATTTCATAAAATTCTTAATAATAAAATGTTCTTATATGAATT
1 TATATAATTTCATAAAATTATTGATAAT-AAATTTTCTTATATGAATT
20128141 TA
1 TA
20128143 CTAAAATCAT
Statistics
Matches: 144, Mismatches: 20, Indels: 41
0.70 0.10 0.20
Matches are distributed among these distances:
42 4 0.03
43 14 0.10
44 43 0.30
45 10 0.07
46 8 0.06
47 40 0.28
48 18 0.12
49 7 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (47 bp):
TATATAATTTCATAAAATTATTGATAATAAATTTTCTTATATGAATT
Found at i:20127975 original size:91 final size:91
Alignment explanation
Indices: 20127871--20128142 Score: 449
Period size: 91 Copynumber: 3.0 Consensus size: 91
20127861 ATATTATAAT
*
20127871 TAATTTAAAATAA-TAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 TAATTTAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGA
*
20127935 TAATAAATTTTTTTATATGAATTTATA
65 TAATAAATTTTCTTATATGAATTTATA
* *
20127962 TAATTTAAAATAATTAATATGT-TATATAATTTAATAATGATATATAATTTCATAAAATTATTGA
1 TAATTTAAAATAATTAATAT-TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGA
20128026 TAATAAATTTTCTTATATGAATTTATA
65 TAATAAATTTTCTTATATGAATTTATA
*
20128053 TAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAAT
1 TAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGAT
*
20128118 AATAAAATGTTCTTATATGAATTTA
66 AAT-AAATTTTCTTATATGAATTTA
20128143 CTAAAATCAT
Statistics
Matches: 169, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
90 1 0.01
91 144 0.85
92 24 0.14
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGAT
AATAAATTTTCTTATATGAATTTATA
Found at i:20128007 original size:18 final size:18
Alignment explanation
Indices: 20127971--20128016 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
20127961 ATAATTTAAA
*
20127971 ATAA-TTAAT-ATGTTAT
1 ATAATTTAATAATGATAT
20127987 ATAATTTAATAATGATAT
1 ATAATTTAATAATGATAT
*
20128005 ATAATTTCATAA
1 ATAATTTAATAA
20128017 AATTATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 17 0.65
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
ATAATTTAATAATGATAT
Found at i:20132390 original size:35 final size:35
Alignment explanation
Indices: 20132350--20132465 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 35
20132340 CGTTAGTCAA
* *
20132350 ATAAACCGACGATAGGTGTGCCCTGCACTAGTTGG
1 ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
* * ** * * * *
20132385 ATAAACTGACAATATTTTGCGCCCAACGCTAGTCGA
1 ATAAACCGACGATA-GGTGTGCCCTACACTAGTCGG
*
20132421 ATAAACCGATGATAGGTGTGCCCTACACTAGTCGG
1 ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
*
20132456 ATAAATCGAC
1 ATAAACCGAC
20132466 AATGTTTTGC
Statistics
Matches: 59, Mismatches: 21, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
35 35 0.59
36 24 0.41
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (35 bp):
ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
Found at i:20132444 original size:71 final size:71
Alignment explanation
Indices: 20132328--20132573 Score: 239
Period size: 71 Copynumber: 3.4 Consensus size: 71
20132318 CGTAACAAAG
* * * * *
20132328 TTTTGCGCCTAGCGTTAGTCAAATAAACCGACGATAGGTGTGCCCTGCACTAGTTGGATAAACTG
1 TTTTGCGCCCAGCGCTAGTCGAATAAACCGATGATAGGTGTGCCCTGCACTAGTCGGATAAACTG
20132393 ACAATA
66 ACAATA
* *
20132399 TTTTGCGCCCAACGCTAGTCGAATAAACCGATGATAGGTGTGCCCTACACTAGTCGGATAAA-TC
1 TTTTGCGCCCAGCGCTAGTCGAATAAACCGATGATAGGTGTGCCCTGCACTAGTCGGATAAACT-
*
20132463 GACAATG
65 GACAATA
* * * * *
20132470 TTTTGCGGCCAGCACTAGTC-AGATAAATCGACAATGTCAAATGTGTG-CCTAGCACTAGTCGGA
1 TTTTGCGCCCAGCGCTAGTCGA-ATAAA-C--CGATG--ATAGGTGTGCCCT-GCACTAGTCGGA
*
20132533 TAAACCGACAATGA
59 TAAACTGACAAT-A
* *
20132547 -ATTGCGCCCAGCGCTAGTCGGATAAAC
1 TTTTGCGCCCAGCGCTAGTCGAATAAAC
20132574 TGAAAATGTC
Statistics
Matches: 143, Mismatches: 21, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
70 2 0.01
71 83 0.58
72 1 0.01
74 4 0.03
75 4 0.03
76 49 0.34
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (71 bp):
TTTTGCGCCCAGCGCTAGTCGAATAAACCGATGATAGGTGTGCCCTGCACTAGTCGGATAAACTG
ACAATA
Found at i:20132535 original size:40 final size:39
Alignment explanation
Indices: 20132478--20132591 Score: 128
Period size: 36 Copynumber: 2.9 Consensus size: 39
20132468 TGTTTTGCGG
*
20132478 CCAGCACTAGTCAGATAAATCGACAATGTCAAATGTGTGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
* *
20132518 CTAGCACTAGTCGGATAAACCGACAATG---AAT-TGCGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
* *
20132554 CCAGCGCTAGTCGGATAAACTGAAAATGTCAAATGTGT
1 CCAGCACTAGTCGGATAAAC-GACAATGTCAAATGTGT
20132592 TTACGTAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
35 1 0.02
36 27 0.44
37 3 0.05
39 3 0.05
40 27 0.44
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (39 bp):
CCAGCACTAGTCGGATAAACGACAATGTCAAATGTGTGC
Found at i:20132542 original size:76 final size:76
Alignment explanation
Indices: 20132436--20132591 Score: 217
Period size: 76 Copynumber: 2.1 Consensus size: 76
20132426 CCGATGATAG
* ** *
20132436 GTGTGCCCTACACTAGTCGGATAAATCGACAATGTTTTGCGGCCAGCACTAGTCAGATAAA-TCG
1 GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACT-G
*
20132500 ACAATGTCAAAT
65 AAAATGTCAAAT
* *
20132512 GTGTG-CCTAGCACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCGCTAGTCGGATAAACTG
1 GTGTGCCCTA-CACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTG
20132576 AAAATGTCAAAT
65 AAAATGTCAAAT
20132588 GTGT
1 GTGT
20132592 TTACGTAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
75 4 0.06
76 66 0.93
77 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (76 bp):
GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTGA
AAATGTCAAAT
Found at i:20132573 original size:36 final size:36
Alignment explanation
Indices: 20132369--20132573 Score: 146
Period size: 36 Copynumber: 5.6 Consensus size: 36
20132359 CGATAGGTGT
* * * *
20132369 GCCCTGCACTAGTTGGATAAACTGACAAT-ATTTTGC
1 GCCCAGCACTAGTCGGATAAACCGACAATGA-ATTGC
* * * ** ** *
20132405 GCCCAACGCTAGTCGAATAAACCGATGAT-AGGTGT
1 GCCCAGCACTAGTCGGATAAACCGACAATGAATTGC
* **
20132440 GCCCTA-CACTAGTCGGATAAATCGACAATGTTTTGC
1 GCCC-AGCACTAGTCGGATAAACCGACAATGAATTGC
* * * *
20132476 GGCCAGCACTAGTCAGATAAATCGACAATGTCAAATGTGT
1 GCCCAGCACTAGTCGGATAAACCGACAATG---AAT-TGC
*
20132516 GCCTAGCACTAGTCGGATAAACCGACAATGAATTGC
1 GCCCAGCACTAGTCGGATAAACCGACAATGAATTGC
*
20132552 GCCCAGCGCTAGTCGGATAAAC
1 GCCCAGCACTAGTCGGATAAAC
20132574 TGAAAATGTC
Statistics
Matches: 130, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
35 25 0.19
36 73 0.56
37 3 0.02
39 1 0.01
40 28 0.22
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (36 bp):
GCCCAGCACTAGTCGGATAAACCGACAATGAATTGC
Found at i:20134020 original size:31 final size:31
Alignment explanation
Indices: 20133983--20134044 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
20133973 AGATAATTTT
20133983 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
20134014 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
20134045 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:20139902 original size:159 final size:158
Alignment explanation
Indices: 20139613--20139934 Score: 626
Period size: 159 Copynumber: 2.0 Consensus size: 158
20139603 ATGTTTAACT
20139613 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
20139678 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
20139743 TAGAGTCCTAAAACAGTCCCTATACTACC
131 TAGAGTCCTAAAACAGTCCCTATACTA-C
*
20139772 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTTAATT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
20139837 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
20139902 TAGAGTCCTAAAACAGTCCCTATACTAC
131 TAGAGTCCTAAAACAGTCCCTATACTAC
20139930 CAACA
1 CAACA
20139935 TTCTATAGTT
Statistics
Matches: 162, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
158 6 0.04
159 156 0.96
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (158 bp):
CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAATT
TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
TAGAGTCCTAAAACAGTCCCTATACTAC
Found at i:20141465 original size:66 final size:66
Alignment explanation
Indices: 20141340--20141465 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 66
20141330 TGTTGTATGT
* * * *
20141340 TAAATAGCTTATTAATGACTGTTTCTTGTATGCAAAAGGTTTTTTTTAATTAAGTATAAATATCG
1 TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAATCAAATATAAATATCG
20141405 A
66 A
* **
20141406 TAAATAGCTTATTAATGACAGTTTGTTGTATGTTAAA-GTTTTTTCT-ATACAAATAATAAA
1 TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAAT-CAAAT-ATAAA
20141466 GTTAAATACG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
64 2 0.04
65 11 0.22
66 38 0.75
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.44
Consensus pattern (66 bp):
TAAATAGCTTATTAATGACAGTTTCTTGTATGCAAAAGGTTTTTTCTAATCAAATATAAATATCG
A
Found at i:20142691 original size:90 final size:90
Alignment explanation
Indices: 20142591--20142851 Score: 310
Period size: 90 Copynumber: 2.9 Consensus size: 90
20142581 AATTATCTTA
* * *
20142591 CAGCTATTATCTGA-AATTATGTTGTGTACTCACAACCATCCGACACCGTATTCACCTGCAATTT
1 CAGCTATTATCT-ACAATTATGTTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTT
20142655 TGGTGGTTCATCCACATATTATCCGG
65 TGGTGGTTCATCCACATATTATCCGG
* * ** *
20142681 CAGCTATTATCTACAATTATATTGTGTACTCACAATCATCCGGTAGCGTATTAACTTGCAATTTT
1 CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTTT
* * * *
20142746 AGTGGTTCATTCACATATTATTCTG
66 GGTGGTTCATCCACATATTATCCGG
* * * * * *
20142771 AAGTTATTATCTACAATTATGTTGTGTATTCACAAGCAT-CTAGCAACGTATTAACTTGCAACAT
1 CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGA-CAACGTATTAACTTGCAA-TT
*
20142835 TTGGTGATTCATCCACA
64 TTGGTGGTTCATCCACA
20142852 ACTCGGTGTG
Statistics
Matches: 144, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
89 2 0.01
90 127 0.88
91 15 0.10
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (90 bp):
CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGACAACGTATTAACTTGCAATTTT
GGTGGTTCATCCACATATTATCCGG
Found at i:20145193 original size:22 final size:21
Alignment explanation
Indices: 20145161--20145221 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
20145151 GCAACCCGAA
20145161 TATATTATGTTATAA-AAATTAAT
1 TATA-TATGTTATAATAAA--AAT
20145184 TATATATGTTA-AATAAAAAT
1 TATATATGTTATAATAAAAAT
* *
20145204 TATATATATTATATTAAA
1 TATATATGTTATAATAAA
20145222 TCACTCACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.38
21 7 0.21
22 10 0.29
23 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
TATATATGTTATAATAAAAAT
Found at i:20145220 original size:25 final size:24
Alignment explanation
Indices: 20145159--20145222 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
20145149 GTGCAACCCG
20145159 AATATATTATGTT--ATAAAAATT
1 AATATATTATGTTAAATAAAAATT
20145181 AAT-TATATATGTTAAATAAAAATT
1 AATATAT-TATGTTAAATAAAAATT
*
20145205 ATATATATTATATTAAAT
1 A-ATATATTATGTTAAAT
20145223 CACTCACCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 3 0.08
22 9 0.25
24 10 0.28
25 11 0.31
26 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (24 bp):
AATATATTATGTTAAATAAAAATT
Found at i:20147472 original size:196 final size:193
Alignment explanation
Indices: 20147086--20147640 Score: 480
Period size: 196 Copynumber: 2.9 Consensus size: 193
20147076 CGCAATAGGT
* * ** * *
20147086 AAGCAATAGCAGCGCTTTCCCTAAAACGTCGCAAAAGATCAAGCATTAGCGGCGCTTTTGAGAAA
1 AAGCAATAGCGGCACTTTCTATAAAACGTCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
* * * * *
20147151 GCGCCGCAAAAAAGTTAAGCAAAACGACGTTTTTCTGTTGAGCTTTACGAACATTAATGGCACTT
66 ACGCCACAAAAAAGTTAAGCAAAACGACCTTTTCCTGTTGAGCTTTACGAACATTAACGGCACTT
* * * *
20147216 TTTAACAAACGCCGTAATATATCGAGCATTAGCGATGCTTATTGAGAAATGGCACTAAAGATC
131 TTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAAGATC
* * *
20147279 AAGTAATAGCGGCACTTTCTATAAAACGCCGCTAAAGGTC-AGACATTAGCGGCGCTTTTTAGAA
1 AAGCAATAGCGGCACTTTCTATAAAACGTCGCTAAAGGTCAAG-CATTAGCGGCGCTTTTGAGAA
* * * * *
20147343 AACGCCATAAAAAAGTTGAGCAAAACGACCTCGTTTCCTTTTTGCGCTTTACTGGA-ATTAACGG
65 AACGCCACAAAAAAGTTAAGCAAAACGACCT--TTTCC-TGTTGAGCTTTAC-GAACATTAACGG
* * * * * *
20147407 CGA-TTTTTAACAAATGCCGCAAAAGATTGAGCATTAGCGGCGCTTGTTGAGAAATGTCGCTAAA
126 C-ACTTTTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAA
*
20147471 GATT
190 GATC
* * * * * *
20147475 GAGCATTAGCGGCGCTTTTTGTAAAACGTCGCTATAGGTCAAGCATTA-----GC-----AG---
1 AAGCAATAGCGGCACTTTCTATAAAACGTCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
* * * ** * * * *
20147527 -CGCCGCAAAAAAGTTAAGCAAAACAACGTTTCTTTTGTTGAGCTTTAGGGACATTAGCGGCGCT
66 ACGCCACAAAAAAGTTAAGCAAAACGACCTTT-TCCTGTTGAGCTTTACGAACATTAACGGCACT
* * * *
20147591 TTTTAACAAACCCCGCAATAGATTGAGCATTAGCGGCGCTTATTG-GAAAT
130 TTTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAAT
20147641 CGCTGCAAAG
Statistics
Matches: 298, Mismatches: 54, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
179 8 0.03
180 62 0.21
181 1 0.00
182 24 0.08
186 2 0.01
191 2 0.01
192 2 0.01
193 78 0.26
195 4 0.01
196 110 0.37
197 5 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (193 bp):
AAGCAATAGCGGCACTTTCTATAAAACGTCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAA
ACGCCACAAAAAAGTTAAGCAAAACGACCTTTTCCTGTTGAGCTTTACGAACATTAACGGCACTT
TTTAACAAACGCCGCAAAAGATCGAGCATTAGCGACGCTTATTGAGAAATGGCACTAAAGATC
Found at i:20147506 original size:40 final size:40
Alignment explanation
Indices: 20147428--20147508 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
20147418 AAATGCCGCA
*
20147428 AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAATGTCGCT
1 AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAACGTCGCT
*
20147468 AAAGATTGAGCATTAGCGGCGCTTTTTGTA-AAACGTCGCT
1 AAAGATTGAGCATTAGCGGCGCTTGTTG-AGAAACGTCGCT
20147508 A
1 A
20147509 TAGGTCAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (40 bp):
AAAGATTGAGCATTAGCGGCGCTTGTTGAGAAACGTCGCT
Found at i:20147520 original size:40 final size:40
Alignment explanation
Indices: 20147436--20147529 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
20147426 CAAAAGATTG
* **
20147436 AGCATTAGCGGCGCTTGTTGAGAAATGTCGCTAAAGATTG
1 AGCATTAGCGGCGCTTGTTGAGAAACGTCGCTAAAGATCA
* * *
20147476 AGCATTAGCGGCGCTTTTTGTA-AAACGTCGCTATAGGTCA
1 AGCATTAGCGGCGCTTGTTG-AGAAACGTCGCTAAAGATCA
*
20147516 AGCATTAGCAGCGC
1 AGCATTAGCGGCGC
20147530 CGCAAAAAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 45 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
AGCATTAGCGGCGCTTGTTGAGAAACGTCGCTAAAGATCA
Found at i:20147738 original size:7 final size:7
Alignment explanation
Indices: 20147723--20147760 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
20147713 GGTTTAGGGA
*
20147723 TTATGGT
1 TTATTGT
20147730 TTATTGT
1 TTATTGT
20147737 TTATTGT
1 TTATTGT
20147744 TTATTGT
1 TTATTGT
20147751 TTATTGT
1 TTATTGT
20147758 TTA
1 TTA
20147761 AGGGTTGGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (7 bp):
TTATTGT
Found at i:20147738 original size:21 final size:21
Alignment explanation
Indices: 20147714--20147760 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
20147704 AGGGATTTGG
20147714 GTTTAGGGATTATGGTTTATT
1 GTTTAGGGATTATGGTTTATT
** * *
20147735 GTTTATTGTTTATTGTTTATT
1 GTTTAGGGATTATGGTTTATT
20147756 GTTTA
1 GTTTA
20147761 AGGGTTGGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (21 bp):
GTTTAGGGATTATGGTTTATT
Found at i:20147873 original size:14 final size:14
Alignment explanation
Indices: 20147819--20147877 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
20147809 AGATGATAGA
20147819 GGTTAGGGGTTTAAG
1 GGTT-GGGGTTTAAG
* *
20147834 GATTATGGGGTTTATG
1 G-GT-TGGGGTTTAAG
**
20147850 GGTTATGGTTTAAG
1 GGTTGGGGTTTAAG
20147864 GGTTGGGGTTTAAG
1 GGTTGGGGTTTAAG
20147878 ATTTGAGGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
14 20 0.59
15 2 0.06
16 11 0.32
17 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.39
Consensus pattern (14 bp):
GGTTGGGGTTTAAG
Found at i:20147968 original size:14 final size:14
Alignment explanation
Indices: 20147937--20147994 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
20147927 GGTTTATGGT
*
20147937 TTAAAGGTT-GGGG
1 TTAAGGGTTAGGGG
* *
20147950 TTTAAGGTTTAGGTG
1 -TTAAGGGTTAGGGG
20147965 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
20147979 TTAAGGGATAGGGG
1 TTAAGGGTTAGGGG
20147993 TT
1 TT
20147995 TATGGTTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
14 34 0.92
15 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:20147976 original size:78 final size:73
Alignment explanation
Indices: 20147813--20148004 Score: 187
Period size: 78 Copynumber: 2.6 Consensus size: 73
20147803 GGGTTTAGAT
* * *
20147813 GATAGAGGTTAGGGGTTTAAGGATTATGGGGTTTATGGGTTATGGTTTAAGGGTTGGGGTTTAAG
1 GATATAGGTTAGGGGTTTAAGCATTATGGGGTTTATGGGTTATGGTTTAAAGGTTGGGGTTTAAG
20147878 ATTTGAGG
66 ATTTGAGG
* * *
20147886 GATATAGATTAGGGGTTTAAGCATTATGGTTTGTGGTTTGTGGTTTATGGTTTAAAGGTTGGGGT
1 GATATAGGTTAGGGGTTTAAGCATTAT-G---G-GGTTTATGGGTTATGGTTTAAAGGTTGGGGT
*
20147951 TTAAGGTTT-AGG
61 TTAAGATTTGAGG
* * *
20147963 TGTTA-AGGGTTAGGGG-TTAAGGGA-TA-GGGGTTTATGGTTTAT
1 -GATATA-GGTTAGGGGTTTAA-GCATTATGGGGTTTATGGGTTAT
20148005 AGCTCATGTT
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
71 13 0.13
72 1 0.01
73 24 0.24
74 1 0.01
75 1 0.01
77 11 0.11
78 49 0.49
ACGTcount: A:0.21, C:0.01, G:0.39, T:0.40
Consensus pattern (73 bp):
GATATAGGTTAGGGGTTTAAGCATTATGGGGTTTATGGGTTATGGTTTAAAGGTTGGGGTTTAAG
ATTTGAGG
Found at i:20147982 original size:28 final size:28
Alignment explanation
Indices: 20147927--20147984 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
20147917 TGTGGTTTGT
20147927 GGTTTATGGTTTAAAGGTTGGGGTTTAA
1 GGTTTATGGTTTAAAGGTTGGGGTTTAA
*
20147955 GGTTTA-GGTGTTAAGGGTTAGGGG-TTAA
1 GGTTTATGGT-TTAAAGGTT-GGGGTTTAA
20147983 GG
1 GG
20147985 GATAGGGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 20 0.74
29 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (28 bp):
GGTTTATGGTTTAAAGGTTGGGGTTTAA
Found at i:20148058 original size:7 final size:7
Alignment explanation
Indices: 20148048--20148166 Score: 55
Period size: 7 Copynumber: 16.9 Consensus size: 7
20148038 AGGGGTTAAA
20148048 GGTTTAG
1 GGTTTAG
*
20148055 GGTTTAT
1 GGTTTAG
*
20148062 GGTTCAAG
1 GGTT-TAG
20148070 GG-TTAG
1 GGTTTAG
*
20148076 GGTTTAA
1 GGTTTAG
20148083 GGTTTAAG
1 GGTTT-AG
* *
20148091 TGTTAAG
1 GGTTTAG
* *
20148098 GGTTAAT
1 GGTTTAG
*
20148105 GG-ATATG
1 GGTTTA-G
*
20148112 AGTTTAG
1 GGTTTAG
*
20148119 GGTTTAA
1 GGTTTAG
*
20148126 GATTTAAG
1 GGTTT-AG
*
20148134 GG-TTAA
1 GGTTTAG
*
20148140 GGTCTAG
1 GGTTTAG
20148147 GGTTTAG
1 GGTTTAG
*
20148154 GGTCTAG
1 GGTTTAG
20148161 GGTTTA
1 GGTTTA
20148167 AAATTAATAT
Statistics
Matches: 79, Mismatches: 26, Indels: 14
0.66 0.22 0.12
Matches are distributed among these distances:
6 8 0.10
7 60 0.76
8 11 0.14
ACGTcount: A:0.24, C:0.03, G:0.35, T:0.39
Consensus pattern (7 bp):
GGTTTAG
Found at i:20148065 original size:21 final size:21
Alignment explanation
Indices: 20148041--20148124 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
20148031 AGAGGTTAGG
20148041 GGTTAA-AGGTTTAGGGTTTAT
1 GGTTAAGA-GTTTAGGGTTTAT
* *
20148062 GGTTCAAG-GGTTAGGGTTTAA
1 GGTT-AAGAGTTTAGGGTTTAT
* * *
20148083 GGTTTAAGTGTTAAGGGTTAAT
1 GG-TTAAGAGTTTAGGGTTTAT
* *
20148105 GGATATGAGTTTAGGGTTTA
1 GGTTAAGAGTTTAGGGTTTA
20148125 AGATTTAAGG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
21 33 0.69
22 15 0.31
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.39
Consensus pattern (21 bp):
GGTTAAGAGTTTAGGGTTTAT
Found at i:20148602 original size:20 final size:20
Alignment explanation
Indices: 20148579--20148617 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
20148569 CACCCAGCCC
20148579 CTAATTCCCTTTCCAAATCA
1 CTAATTCCCTTTCCAAATCA
20148599 CTAATTCCCTTTCCAAATC
1 CTAATTCCCTTTCCAAATC
20148618 CCTTCCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (20 bp):
CTAATTCCCTTTCCAAATCA
Found at i:20151114 original size:3 final size:3
Alignment explanation
Indices: 20151108--20151152 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
20151098 GATAAGTAGC
* * *
20151108 AAT AAT ATT AGT AAT AAT AAT AAT AAT AGT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
20151153 AAGATGATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:20151145 original size:15 final size:15
Alignment explanation
Indices: 20151089--20151151 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
20151079 AGCTATTATA
20151089 TAATAATATGATAAGTAG
1 TAATAATA--ATAA-TAG
* * * *
20151107 CAATAATATTAGTAA
1 TAATAATAATAATAG
20151122 TAATAATAATAATAG
1 TAATAATAATAATAG
20151137 TAATAATAAATAATA
1 TAATAAT-AATAATA
20151152 AAAGATGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
15 20 0.56
16 9 0.25
18 7 0.19
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:20153005 original size:123 final size:121
Alignment explanation
Indices: 20152800--20153026 Score: 400
Period size: 123 Copynumber: 1.9 Consensus size: 121
20152790 CTTTGAAGAA
* *
20152800 TTAATATGTAACCTATATTAGTATGATATATAACCTACATTTCAAATTCAATACTAATAAGTTTT
1 TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
*
20152865 TAAATTTTAAAAGTAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 TAAATTTTAAAAATAATTATAATTATTATA-TTTTAAATAACTTAAAACCTATATTT
*
20152922 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAAGTCATTACTAATAAGTTT
1 TTAATATATAACCTATATTAGTAT-GATATATAACCTACATTTCAAAGTCAATACTAATAAGTTT
20152987 TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATA
65 TTAAATTTTAAAAATAATTATAATTATTATATTTTAAATA
20153027 TTATATCACT
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
122 32 0.32
123 68 0.68
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.44
Consensus pattern (121 bp):
TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
TAAATTTTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACCTATATTT
Found at i:20153104 original size:9 final size:9
Alignment explanation
Indices: 20153090--20153455 Score: 116
Period size: 9 Copynumber: 42.1 Consensus size: 9
20153080 ACTAATTTCC
*
20153090 ACATAACAT
1 ACATAACTT
20153099 ACATAACTT
1 ACATAACTT
*
20153108 ACATAATTT
1 ACATAACTT
*
20153117 ACATAA-AT
1 ACATAACTT
* * *
20153125 ATATATCAT
1 ACATAACTT
*
20153134 ATCAAAACTT
1 A-CATAACTT
20153144 ACATAACTT
1 ACATAACTT
*
20153153 ACATAATTT
1 ACATAACTT
20153162 ACATAACTTT
1 ACATAAC-TT
* *
20153172 AAAGAA-TT
1 ACATAACTT
* *
20153180 GAAAAAAAAACTT
1 ----ACATAACTT
20153193 ACATAACTT
1 ACATAACTT
**
20153202 ACATATTTT
1 ACATAACTT
*
20153211 ACATAA-AT
1 ACATAACTT
* * *
20153219 ATATATCATAA
1 ACATAAC-T-T
*
20153230 ATATAACTT
1 ACATAACTT
*
20153239 ACATAACAT
1 ACATAACTT
20153248 ACATAA---
1 ACATAACTT
* *
20153254 ATATAATTT
1 ACATAACTT
20153263 ACATAA---
1 ACATAACTT
*
20153269 ATATAACTT
1 ACATAACTT
20153278 ACATAACTT
1 ACATAACTT
20153287 ACATAA--T
1 ACATAACTT
*
20153294 ACATAA-AT
1 ACATAACTT
* * *
20153302 ATATATCAT
1 ACATAACTT
20153311 ATCATAACTT
1 A-CATAACTT
20153321 ACATAACTT
1 ACATAACTT
**
20153330 ATTTATACTT
1 ACATA-ACTT
20153340 ACATAA--T
1 ACATAACTT
20153347 ACATAA---
1 ACATAACTT
*
20153353 ATATAACTT
1 ACATAACTT
20153362 ACATAACTT
1 ACATAACTT
20153371 ACATAA--T
1 ACATAACTT
*
20153378 ACATAA-AT
1 ACATAACTT
* * *
20153386 ATATATCAT
1 ACATAACTT
20153395 ATCATAACTT
1 A-CATAACTT
20153405 ACATAACTT
1 ACATAACTT
**
20153414 ATTTATACTT
1 ACATA-ACTT
20153424 ACATAA--T
1 ACATAACTT
20153431 ACATAA---
1 ACATAACTT
*
20153437 ATATAACTT
1 ACATAACTT
20153446 ACATAACTT
1 ACATAACTT
20153455 A
1 A
20153456 TTTATACTTA
Statistics
Matches: 271, Mismatches: 55, Indels: 62
0.70 0.14 0.16
Matches are distributed among these distances:
6 20 0.07
7 28 0.10
8 22 0.08
9 150 0.55
10 38 0.14
11 6 0.02
12 5 0.02
13 2 0.01
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (9 bp):
ACATAACTT
Found at i:20153259 original size:15 final size:15
Alignment explanation
Indices: 20153241--20153283 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
20153231 TATAACTTAC
*
20153241 ATAACATACATAAAT
1 ATAACTTACATAAAT
*
20153256 ATAATTTACATAAAT
1 ATAACTTACATAAAT
20153271 ATAACTTACATAA
1 ATAACTTACATAA
20153284 CTTACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAACTTACATAAAT
Found at i:20153300 original size:31 final size:31
Alignment explanation
Indices: 20153241--20153410 Score: 107
Period size: 31 Copynumber: 5.7 Consensus size: 31
20153231 TATAACTTAC
* *
20153241 ATAACATACATAAATATA-AT-TTACATAAAT
1 ATAACATACATAACT-TACATAATACATAAAT
*
20153271 ATAACTTACATAACTTACATAATACATAAAT
1 ATAACATACATAACTTACATAATACATAAAT
20153302 ATATATCATATCATAACTTACAT-A-AC-T---T
1 ATA-A-CATA-CATAACTTACATAATACATAAAT
** * *
20153330 AT-TTATAC-TTAC--AT--AATACATAAAT
1 ATAACATACATAACTTACATAATACATAAAT
*
20153355 ATAACTTACATAACTTACATAATACATAAAT
1 ATAACATACATAACTTACATAATACATAAAT
20153386 ATATATCATATCATAACTTACATAA
1 ATA-A-CATA-CATAACTTACATAA
20153411 CTTATTTATA
Statistics
Matches: 106, Mismatches: 14, Indels: 36
0.68 0.09 0.23
Matches are distributed among these distances:
20 1 0.01
21 3 0.03
22 1 0.01
23 3 0.03
24 1 0.01
25 6 0.06
26 3 0.03
27 3 0.03
28 3 0.03
29 3 0.03
30 15 0.14
31 27 0.25
32 4 0.04
33 7 0.07
34 26 0.25
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (31 bp):
ATAACATACATAACTTACATAATACATAAAT
Found at i:20153370 original size:84 final size:84
Alignment explanation
Indices: 20153188--20153455 Score: 409
Period size: 84 Copynumber: 3.2 Consensus size: 84
20153178 TTGAAAAAAA
* * **
20153188 AACTTACATAACTTACATATTTTACATAAATATATATCATAAAT-ATAACTTACATAACATACAT
1 AACTTACATAACTTACATA--ATACATAAATATATATCAT--ATCATAACTTACATAACTTATTT
* *
20153252 A-AATATA-AT-TTACATAAATAT
62 ATACT-TACATAATACATAAATAT
20153273 AACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTATTTATAC
1 AACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTATTTATAC
20153338 TTACATAATACATAAATAT
66 TTACATAATACATAAATAT
20153357 AACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTATTTATAC
1 AACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTATTTATAC
20153422 TTACATAATACATAAATAT
66 TTACATAATACATAAATAT
20153441 AACTTACATAACTTA
1 AACTTACATAACTTA
20153456 TTTATACTTA
Statistics
Matches: 173, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
81 2 0.01
82 20 0.12
83 22 0.13
84 110 0.64
85 19 0.11
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (84 bp):
AACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTATTTATAC
TTACATAATACATAAATAT
Found at i:20161578 original size:41 final size:43
Alignment explanation
Indices: 20161448--20161588 Score: 155
Period size: 44 Copynumber: 3.3 Consensus size: 43
20161438 GAACGGTACT
* * *
20161448 TTTAGCGGCGTTTGAGA-ATGAAGCGTCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTTGTGATA-AAAGCGCCGCTAAAGGTCATGTTA
*
20161491 TTTAACGGCGTTTGGTGATAAAAGCGCCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTT-GTGATAAAAGCGCCGCTAAAGGTCATGTTA
* * * *
20161535 TTTAGCGGCGCTTT-T-TTTAAA-CGCTGCTAAAGGTCATGATA
1 TTTAGCGGCG-TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTA
20161576 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
20161589 ATGTGGACAA
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
40 3 0.03
41 28 0.33
42 4 0.05
43 13 0.15
44 34 0.40
45 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTA
Found at i:20163414 original size:33 final size:33
Alignment explanation
Indices: 20163342--20163416 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
20163332 TCAAATCATG
*
20163342 TTTT-ATTTTTATGTAGTCAATTTGTTTTATTC
1 TTTTAATTTTTATGTAGTCAATTTCTTTTATTC
* *
20163374 TTCTAATTTTTATGTAGGT-AATATTCTTTTCTT-
1 TTTTAATTTTTATGTA-GTCAAT-TTCTTTTATTC
20163407 TTTTAATTTT
1 TTTTAATTTT
20163417 AATTTTCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.08
33 23 0.64
34 10 0.28
ACGTcount: A:0.20, C:0.07, G:0.08, T:0.65
Consensus pattern (33 bp):
TTTTAATTTTTATGTAGTCAATTTCTTTTATTC
Found at i:20164655 original size:21 final size:22
Alignment explanation
Indices: 20164608--20164655 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
20164598 CTAAAATATA
**
20164608 GACCCTAAAACCCTAGACTTTG
1 GACCCTAAAACCCTAGACCATG
* *
20164630 TACCCT-AAACCTTAGACCATG
1 GACCCTAAAACCCTAGACCATG
20164651 GACCC
1 GACCC
20164656 ATGGTTCAAG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.31, C:0.35, G:0.12, T:0.21
Consensus pattern (22 bp):
GACCCTAAAACCCTAGACCATG
Found at i:20171331 original size:16 final size:17
Alignment explanation
Indices: 20171312--20171345 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
20171302 TATTTGTTTT
*
20171312 ATTTTAAATAA-ATAAA
1 ATTTTAAAAAAGATAAA
20171328 ATTTTAAAAAAGATAAA
1 ATTTTAAAAAAGATAAA
20171345 A
1 A
20171346 GACTCTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTTTAAAAAAGATAAA
Found at i:20171460 original size:76 final size:76
Alignment explanation
Indices: 20171380--20171527 Score: 278
Period size: 76 Copynumber: 1.9 Consensus size: 76
20171370 AAATGCTTTT
* *
20171380 AAAAATATAAATATAAATTTTAAAATTCAATATTATCTAAATTGGATTGGTTAGCGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
20171445 TTTTTTTAATC
66 TTTTTTTAATC
20171456 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
20171521 TTTTTTT
66 TTTTTTT
20171528 TATCTCTCAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (76 bp):
AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
TTTTTTTAATC
Found at i:20171631 original size:28 final size:26
Alignment explanation
Indices: 20171599--20171653 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
20171589 ATAACATTGA
*
20171599 ATTTTGAAATTTTTTATATTTTTAAAAC
1 ATTTTGAAA-TATTT-TATTTTTAAAAC
**
20171627 ATTTTTTAATATTTTATTTTTAAAAC
1 ATTTTGAAATATTTTATTTTTAAAAC
20171653 A
1 A
20171654 AATCATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.54
27 4 0.17
28 7 0.29
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (26 bp):
ATTTTGAAATATTTTATTTTTAAAAC
Found at i:20171662 original size:26 final size:25
Alignment explanation
Indices: 20171610--20171667 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
20171600 TTTTGAAATT
** **
20171610 TTTTATATTTTTAAAACATTTTTTAA
1 TTTT-TATTTTTAAAACAAATCATAA
20171636 TATTTTATTTTTAAAACAAATCATAA
1 T-TTTTATTTTTAAAACAAATCATAA
20171662 TTTTTA
1 TTTTTA
20171668 AAATTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATTTTTAAAACAAATCATAA
Found at i:20171888 original size:8 final size:9
Alignment explanation
Indices: 20171866--20171898 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
20171856 AGTTGAATCA
*
20171866 ATTTTTATA
1 ATTTTTATG
20171875 ATTTTTATG
1 ATTTTTATG
20171884 ATTTTTATG
1 ATTTTTATG
20171893 ATTTTT
1 ATTTTT
20171899 TTATTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (9 bp):
ATTTTTATG
Found at i:20173064 original size:31 final size:32
Alignment explanation
Indices: 20173029--20173090 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
20173019 CTATGTTATA
**
20173029 ATATTA-ATAATTTTAATAATTAAGTA-AATAT
1 ATATTATATAATAATAA-AATTAAGTATAATAT
20173060 ATATTATATAATAATAAAATTAAGTATAATA
1 ATATTATATAATAATAAAATTAAGTATAATA
20173091 AAAAAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (32 bp):
ATATTATATAATAATAAAATTAAGTATAATAT
Found at i:20173100 original size:16 final size:18
Alignment explanation
Indices: 20173066--20173102 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
20173056 ATATATATTA
*
20173066 TATAATAATAAAATTAAG
1 TATAATAATAAAATAAAG
20173084 TATAATAA-AAAA-AAAG
1 TATAATAATAAAATAAAG
20173100 TAT
1 TAT
20173103 TAAAAGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TATAATAATAAAATAAAG
Found at i:20175835 original size:41 final size:40
Alignment explanation
Indices: 20175790--20175916 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 40
20175780 TGTTAGAGTT
* *
20175790 TGAATTGAGTTAAACAGAAAAGAATCGATTTAAAACAATAA
1 TGAATTGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
*
20175831 TGAATTGATTCAAACA-ACAAAGAATTGAGTCAAAACAAT-A
1 TGAATTGATT-AAACAGA-AAAGAATTGATTCAAAACAATAA
* * * *
20175871 TACAATCGATTTAAAAAGTAAAGAATTGATTCAAAACAATAA
1 T-GAATTGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
20175913 TGAA
1 TGAA
20175917 ACTAAGATTG
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
40 5 0.07
41 62 0.87
42 4 0.06
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.24
Consensus pattern (40 bp):
TGAATTGATTAAACAGAAAAGAATTGATTCAAAACAATAA
Found at i:20175847 original size:20 final size:21
Alignment explanation
Indices: 20175811--20175916 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
20175801 AAACAGAAAA
* *
20175811 GAATCGATTTAAAACAATAAT
1 GAATTGATTCAAAACAATAAT
* *
20175832 GAATTGATTC-AAACAACAAA
1 GAATTGATTCAAAACAATAAT
*
20175852 GAATTGAGTCAAAACAAT-AT
1 GAATTGATTCAAAACAATAAT
* * * * *
20175872 ACAATCGATTTAAAA-AGTAAA
1 -GAATTGATTCAAAACAATAAT
20175893 GAATTGATTCAAAACAATAAT
1 GAATTGATTCAAAACAATAAT
20175914 GAA
1 GAA
20175917 ACTAAGATTG
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
20 31 0.49
21 32 0.51
ACGTcount: A:0.54, C:0.10, G:0.11, T:0.25
Consensus pattern (21 bp):
GAATTGATTCAAAACAATAAT
Found at i:20175859 original size:61 final size:61
Alignment explanation
Indices: 20175791--20175905 Score: 153
Period size: 61 Copynumber: 1.9 Consensus size: 61
20175781 GTTAGAGTTT
* * *
20175791 GAATTGAGT-TAAACAGA-AAAGAATCGATTTAAAACAATAATGAATTGATTCAAACAACAAA
1 GAATTGAGTCAAAACA-ATAAACAATCGATTTAAAA-AATAAAGAATTGATTCAAACAACAAA
* *
20175852 GAATTGAGTCAAAACAATATACAATCGATTTAAAAAGTAAAGAATTGATTCAAA
1 GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATTGATTCAAA
20175906 ACAATAATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 27 0.57
62 20 0.43
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.24
Consensus pattern (61 bp):
GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATTGATTCAAACAACAAA
Found at i:20183147 original size:17 final size:18
Alignment explanation
Indices: 20183127--20183169 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
20183117 TGTTTAGTAA
20183127 TGTTTTTA-TCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
20183144 TGTTTTTAGTCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
*
20183162 TGCTTTTA
1 TGTTTTTA
20183170 AGAAATAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.49
Consensus pattern (18 bp):
TGTTTTTAGTCTCAAAAG
Found at i:20195077 original size:32 final size:32
Alignment explanation
Indices: 20195036--20195103 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
20195026 TTTTTGAACT
20195036 TAATTGGTACTCAAACATGGAAATCATAAGCC
1 TAATTGGTACTCAAACATGGAAATCATAAGCC
20195068 TAATTGGTACTCAAACATGGAAATCATAAGCC
1 TAATTGGTACTCAAACATGGAAATCATAAGCC
20195100 -AATT
1 TAATT
20195104 TGTTGCTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 32 0.89
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (32 bp):
TAATTGGTACTCAAACATGGAAATCATAAGCC
Found at i:20201920 original size:104 final size:104
Alignment explanation
Indices: 20201740--20202110 Score: 636
Period size: 104 Copynumber: 3.6 Consensus size: 104
20201730 TGTATATAAA
** * * *
20201740 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
20201804 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
20201844 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
20201909 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
20201948 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
20202013 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
20202052 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
20202111 ATAACGGTTA
Statistics
Matches: 256, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
104 255 1.00
105 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:20203683 original size:38 final size:38
Alignment explanation
Indices: 20203632--20203739 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
20203622 GATCTACCAT
* *
20203632 TTGTTATAGATTCTCGGGTAATATAATGAGATCTAGCC
1 TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
*
20203670 TTGTTGTAAATTCTCGGGTAATATAATAAGATCTAGCC
1 TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
* *
20203708 TAGTTGTAAATTGTCGGGTAATATAATGAGAT
1 TTGTTGTAAATTCTCGGGTAATATAATGAGAT
20203740 TCAAACTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (38 bp):
TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
Found at i:20204200 original size:19 final size:20
Alignment explanation
Indices: 20204172--20204211 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
20204162 GTGACCCCTG
*
20204172 TTTTGCAAAA-TTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
20204191 TTTTGAAAAAGTTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
20204211 T
1 T
20204212 AGTCCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTTGAAAAAGTTTCCAGTT
Found at i:20206850 original size:16 final size:17
Alignment explanation
Indices: 20206829--20206861 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
20206819 CCAAAATATA
20206829 TATATTT-AATAAAAAT
1 TATATTTGAATAAAAAT
*
20206845 TATATTTGATTAAAAAT
1 TATATTTGAATAAAAAT
20206862 AAAAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TATATTTGAATAAAAAT
Found at i:20224314 original size:88 final size:88
Alignment explanation
Indices: 20224203--20224413 Score: 232
Period size: 88 Copynumber: 2.4 Consensus size: 88
20224193 AGTCCTTGTC
* * *
20224203 TTTTCACTCAATTTGGTATTTAAATTTTCAAAATGCATAAAAAATGC-CTTCAAACTTTTTCAAA
1 TTTTCACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTT-AAACTTTTTCAAA
* *
20224267 GAAAAGCAATTTAGCTCCTA-TCTT
65 -AAAAGCAATTAAGCCCCTACTCTT
* * *
20224291 TTTTGCACTCAA-CTGGTATTTAAACTTTCAAAATGTATATAAAGGGCTCTTAAACTTTTTCAAA
1 TTTT-CACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTTAAACTTTTTCAAA
* *
20224355 ATAAGCAATTAAGCCCCTACTTTT
65 AAAAGCAATTAAGCCCCTACTCTT
* * *
20224379 TTTTACACTCAAT-TGGATACTTGAACTGTCAAAAT
1 TTTT-CACTCAATCTGG-TATTTAAACTTTCAAAAT
20224414 ACATCAGAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
87 16 0.15
88 63 0.61
89 25 0.24
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (88 bp):
TTTTCACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGGCTCTTAAACTTTTTCAAAA
AAAGCAATTAAGCCCCTACTCTT
Found at i:20224885 original size:13 final size:13
Alignment explanation
Indices: 20224869--20224894 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20224859 ACTTTAACAA
20224869 TTAATGGTTAAAG
1 TTAATGGTTAAAG
20224882 TTAATGGTTAAAG
1 TTAATGGTTAAAG
20224895 GACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TTAATGGTTAAAG
Found at i:20224961 original size:19 final size:19
Alignment explanation
Indices: 20224929--20224993 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
20224919 TTTTTTTATG
* *
20224929 ATTTTTATACAATTTTACA
1 ATTTTTTTATAATTTTACA
* *
20224948 ATTTTTTTATAA-TTTCCT
1 ATTTTTTTATAATTTTACA
*
20224966 ATTGTTTTTATAATATTTTCAA
1 ATT-TTTTTATAAT-TTTAC-A
20224988 ATTTTT
1 ATTTTT
20224994 ATATTCTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 7 0.19
19 19 0.53
21 7 0.19
22 3 0.08
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTTTATAATTTTACA
Found at i:20225016 original size:22 final size:22
Alignment explanation
Indices: 20224988--20225058 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 22
20224978 ATATTTTCAA
20224988 ATTTTTATATTCTTTATATAAT
1 ATTTTTATATTCTTTATATAAT
*
20225010 ATTTTTATATTCTTTATAAAGAAT
1 ATTTTTATATTCTTTAT--ATAAT
*
20225034 ATTTTTATATTCTTTAT-TAAA
1 ATTTTTATATTCTTTATATAAT
20225055 ATTT
1 ATTT
20225059 AATAATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
21 6 0.14
22 17 0.39
24 21 0.48
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (22 bp):
ATTTTTATATTCTTTATATAAT
Found at i:20225477 original size:13 final size:13
Alignment explanation
Indices: 20225459--20225524 Score: 64
Period size: 13 Copynumber: 5.1 Consensus size: 13
20225449 AGTTCTTCAT
20225459 TACTTTTGAAAAG
1 TACTTTTGAAAAG
20225472 TACTTTTGAAAAG
1 TACTTTTGAAAAG
* *
20225485 TGC-TGTGAAAAAG
1 TACTTTTG-AAAAG
20225498 TACTTTT-AAGAAG
1 TACTTTTGAA-AAG
**
20225511 TGTTTTTGAAAAG
1 TACTTTTGAAAAG
20225524 T
1 T
20225525 TTGGTTTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 5 0.12
13 34 0.79
14 4 0.09
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:20225522 original size:26 final size:25
Alignment explanation
Indices: 20225462--20225524 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
20225452 TCTTCATTAC
20225462 TTTTGAAAAGTACTTTTGAAAAGTG
1 TTTTGAAAAGTACTTTTGAAAAGTG
* *
20225487 CTGTGAAAAAGTACTTTT-AAGAAGTG
1 TTTTG-AAAAGTACTTTTGAA-AAGTG
20225513 TTTTTGAAAAGT
1 -TTTTGAAAAGT
20225525 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 5 0.16
26 23 0.74
27 3 0.10
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.38
Consensus pattern (25 bp):
TTTTGAAAAGTACTTTTGAAAAGTG
Found at i:20231773 original size:20 final size:21
Alignment explanation
Indices: 20231732--20231780 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 21
20231722 AAAACTTCAT
20231732 AAAAATTATAAAGATATTTTAA
1 AAAAATTATAAAGATA-TTTAA
20231754 AAAAATATATAAA-ATA-TTAA
1 AAAAAT-TATAAAGATATTTAA
20231774 AAAAATT
1 AAAAATT
20231781 TAATAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 1 0.04
20 10 0.38
22 9 0.35
23 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAATTATAAAGATATTTAA
Found at i:20235585 original size:828 final size:830
Alignment explanation
Indices: 20232143--20247890 Score: 17039
Period size: 830 Copynumber: 18.9 Consensus size: 830
20232133 AGAGAGGAAT
* *
20232143 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
20232208 GACAATTG-T--TG----C-TC-CC-TTCTTCACCTACGCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
20232263 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
20232328 ATTATGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
20232391 ATAACAAATAACAAAGAAAACAGAAATGATACTTGAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
20232456 ATGCAAAGGCGTTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* ** *
20232521 CACTACATATATAGAGGACTATGATACAATTTGGAAATCAAAAGAAATATTTACTTGAAAAGGCA
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * *
20232586 AGTATCTCTAAGGACTCTGTTGAGCAGACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* * *
20232651 CTACGTGCTTTCTTTCCTTTTTGTCCATAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * *
20232716 ATTA-ATGTTTTTGACCCCTAGTGATAATTATGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAA
585 ATTAGA-GTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * *
20232780 GAAGTCTAAGCGCAGTGTTGAAGTTTATAACAAATATTA-AAAAAAAATAGAAATGATACTTAAG
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATA--ACAAAGAAAACATAAATGATACTTAAG
* * *
20232844 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCACTATACATATTATATAGAAGTGTTGA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* * *
20232909 CTAACAGACTAACTCAACCATAACGACTAACTACTTATATAGAGGACTATGATA
777 CTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
20232963 CAATTTGGAAA-CTGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGC
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
20233027 AGACAATTGCTGCTCCCTTCTTC-CCATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
65 AGACAATTGCTGCTGCCTTCTTCACC-TTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* *
20233091 CCTTAATGCTCATTTTCATTCTTTTTCCTTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * *
20233156 TAATTGTGTGTTTGGCGTTTTTTGTTAGTAAGGGGAGGAAGAAGTCTAAGCCTAATGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
20233221 TATAACAAATAACAAAAAAAAAAAACAAAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
259 TATAACAAATAAC----AAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
* * * * * *
20233286 CATTAATGCGAAGGCGCTGTAGATATTATATAGGAGTGTTGACGAACAGATTAACTAAACCTTAA
320 CTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAA
* * * *
20233351 CGGCT-ACCTACTTATACAGAGGACCATGATACAATATGAAAATCGCATGAAATATTTACTTGAA
385 CGGCTCA-CTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAA
* * * * *
20233415 AAGGCAACTATCTCTAAGGACCGTATTGAGCAGAGAATTGATG-------C-TC-CC-TTCTTCA
449 AAGGCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCA
* *
20233470 CCTATGCTACGTGCCTTCTTTCTTTTTTGTCCTTTATGCTCCTTTTCATTCTTTTTCATTTCATA
514 CCTATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATA
* * *
20233535 TCAGATATTAGAGTTTTTGAAACCTAGTGATAATTTTCTGTTTGGC-TTTTTTGTTTGTAAGGGG
579 TCAGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGG
* * *
20233599 AGGAAGAAGTCTAAGCGTAGTGTTGATGCTTATAACAAATAACAATGAAAACATAAATGATACTT
644 AGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTT
* * * * *
20233664 AAGAATACTTTATTCATTAAGCCATTCTTTAATTCACAGGCACTGTACATATTATATAAGAGTGT
709 AAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGT
* * * *
20233729 TGACTAATAGACTAACTTAACCTTAAAGCCTAACTACTTATATAGAGGACTATGATA
774 TGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
20233786 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGAATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
*
20233851 GACAATTGCTGCTG---------CC-TTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTTTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20233906 TTAATTCTCCTTTTCATTCTTTTTCATTTCATATCAGATATCAGAGTTTTTGACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * *
20233971 ATTGTGTGTTTTGCGTGTTTTCTTTGTAAAGGGAGGAAGAATTCTAAGCGCAATGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
20234036 TAACAAATAAAAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * * *
20234101 TGCAAAGGCACTGTATATATTATATCGGAGTGTTGACTAACAGAATAAATAAACCTTAACAGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTC
* *
20234166 ACTACTTATATAGAGGACTATGATACAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* ** *
20234231 GTATCTCTAAGGACCTTGTTGAGCAGACAATTGTTGCTCCCTTCTTTGCATTTCTTCACCTATGC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* * * *
20234296 TACGTACCTTCTTTCCTTTTTGTCGTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
* *
20234361 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * *
20234426 AGTCTAAGTGCAGTGTTGATGTTTATAACAAATAACAAAAAAAAACATAAATGATACTTAAGAAT
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAAC-AAAGAAAACATAAATGATACTTAAGAAG
*
20234491 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* * *
20234556 ATAGACTAACTTAACCTTAACGGCTAACTACTTAAATAGAGGACTATGATA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* *
20234607 CAATGTGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
20234671 AGATC-ATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGT
65 AGA-CAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
*
20234735 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
** * *
20234800 TAATTGTGTGTTTTACGTTTTTTATTAGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * *
20234865 TATAAAAAATAACAAAGAAAAGAGAAATGAAACATATGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
20234930 AATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* *
20234995 TCATTACTTATAAAGAGGACTATGATACAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGC
389 TCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGC
* * *
20235059 AAGTATCTCTAAGGACCCTGTTGAG-AGGACAATTGTTGATCCCTTCTTCACCCTTCTTTACCTA
454 AAGTATCTCTAAGGACCCTGTTGAGCA-GACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTA
* * *
20235123 TGCTATGTGCCTTCTTTCCTTTTTGTCCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCA
518 TGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCA
* * * * *
20235187 GATATTAGAGTTTTTGAA-CCTAGTAATAATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* * * *
20235251 AAGAAGTCTAAGCTTAGTGTTGTAGTTTATAACAAATAACAAAGAAAACAGAAATGAAACTTAAG
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
*
20235316 AAGACTTTATTCA-TAAGGCAATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
712 AAGACTTTATTCATTAA-GCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
* * ** *
20235380 ACTAACAGACTAACTGAACCTTAACGGCTAACCACTTATATATAAAACTATGACA
776 ACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
20235435 TAATTTGGAAATCACATTAAATATTTACATGAAAAGGCAAGTATATCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20235500 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * * *
20235565 TTAATGCTCTTTTTCATTCTTTTTCATTCCATAACAAATATTAGAGTTTTTGAACCATAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
20235630 ATTGTGTGTTTGGCATCTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
20235695 TAGCAAAGAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
*
20235760 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTC
20235825 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* * * * **
20235890 GTATCTCAAAGGGCCCTGTTGAGCAGACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATGC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* *
20235955 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
* * *
20236020 TTAGAGTTTTTGAACCCTAGTAATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * * *
20236085 AGTCTAGGCTTAGTGTTGAAGTTTATCACAAATAACAAAGAAAACAGAGATGAAACTTAAGAAGA
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
* *
20236150 CTTTATTCATAAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAA
716 CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
* * * * *
20236215 CAGACTAATTGAACCTTAACGACTAACTACTTATATAAATGACTATGGTA
781 CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
20236265 TAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-AATGTATCTCTGATGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA-GTATCTCTAAGGACCCTGTTGAGC
* * * * *
20236329 AAACAATTACTGCTTG-CTTCTTCACCTTTCTTCACCTATACTATGTTCCTTCTCTT-CTTTTTG
65 AGACAATTGCTGC-TGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCT-TTCCTTTTTG
* * *
20236392 TCCTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAAATATTAGAGTTTTTGAACCCTAGTG
128 TCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * *
20236457 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
20236522 TTTTAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCT
258 TTATAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * * *
20236586 TTAATGCAAAGGCACTATACATATTATATAGGAGTGTTAAGTAACAAACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
*
20236651 GCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGTATGAAATATTTACTTGAAAAG
387 GCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
* * * * * *
20236716 GCAAGTATCTCTAAAGACCCTGTTGGGCAGACAATTTTTGCTCTCTTTTTTACCTTTCTTCACCT
452 GCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCT
* * * *
20236781 ATGCTACGTCCCTACTTTCCTTTTTGTCCTTAATGCTCCTATTCATTCTTTTTTATTTCATATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* * *
20236846 GATATTAGAGTTTTTGAACCCTAGTAATAATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
*
20236911 AGGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* * * *
20236976 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTGTATAGGAATGTTAA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* * **
20237041 CTAACAGACTAACTTAACCTTAACGGCTCACTACTTATATAGAAAACTATGATA
777 CTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
*
20237095 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20237158 GGACAATTGCTGAT-CACTTCTTCACCTTTCTTCACCTATGCTACGTGCATTCTTTCCTTTTTGT
66 -GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* * * * *
20237222 CCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCACATATTAGAGTTTTTGAACTCTAGTA
129 CCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * * * *
20237286 ATAATTGTGTATTTAGCATTTTTTATTTGT-AAGGAGAGGAAGAAGTCTAAGCATAGTGTTGAAG
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGG-GAGGAAGAAGTCTAAGCGTAGTGTTGAAG
* * *
20237350 TTTATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCT
257 TTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * *
20237415 TTAATGCAAAGGCGTTGCACATATTGTATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* * *
20237480 GCTCACTACTTATATAGAGGACTATGATAAAATATGGAACTCGCAT-AAATATTTACTTGAAAAG
387 GCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
* ** *
20237544 GCAAGTATCTCTAAGGACCCTATTGAG-AGGACAATTACTGCTACCTTCTTCACCTTTCTTCACC
452 GCAAGTATCTCTAAGGACCCTGTTGAGCA-GACAATTGTTGCTCCCTTCTTCACCTTTCTTCACC
* *
20237608 TATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCATTTCATTCTTTTTCATTCCATATC
516 TATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATC
*
20237673 AAATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGC-TTTTTTGTTTGTAAGGGGAG
581 AGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAG
*
20237737 GAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGAAACTTAA
646 GAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAA
* * ** * * * *
20237802 GAAGACTTTATTCATAAAGCCATTCTTTAATGTAAAGGTACTGTACATATTTTATAGCAGTATTC
711 GAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
* * *
20237867 ACTAACAGACTAACTAAACCTTAACGGCTAAATACTTATATAGAGAACTATGATA
776 ACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * *
20237922 CAATTTGGAAATCGC-TTAAATTCTTTACTTAAAAAGGCAAGTATGTCTAAAGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAA-TATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* * *
20237986 AGAAAATTGCTACTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
20238051 ATTAATGGTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGACCCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
20238116 AATTGTGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAAAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20238181 ATAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
20238246 ATGCAAAGGCGTTGTACATATTATATAGGAGCGTTGACTAATAGACTAACAGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
20238311 CATTACTTATATAGAGGACTATGATACAAATTAGAAATCGCATGAAATATTTACTTGAAAAGGCA
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * * * **
20238376 AGTATCTCAAAGGGCCCTGTTGAGCAGACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* *
20238441 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * * *
20238506 ATTAGAGTTTTTGAACACTAGTAATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * * *
20238571 AAGTCTAAGCTTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGAAACTGAAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
* * *
20238636 ACTTTATTCATAAAGCCATTCTTTAATGCAAAGGTGTTGTACATATTATATAGGAGTGTTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* * * *
20238701 CCAGACTAATTGAACCTTAACGGCTAACTACTTATATAGATGACTATGGTA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * * *
20238752 TAATTTGGAAATTGCATGAATTACTTACTTGAAAAGGGATGTATCTCTGAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20238817 AACAATTGCTGCT-CGCTTCTTCACCTTTCTTCACCAATGCTATGTGCCTTCTTTCCTTTTTGTC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
20238881 CTTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
20238946 AATTGTGTGTTTGGAGTTGTTTGTTTGTAAGGGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
20239011 ATAAAAAATAAAAAAGAAAACATAAATGACACTTAAGAAGACTTTATCCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
20239076 ATGCAAGGGTGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAA-CTGGAA-GAA
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCT-TAACG--
* * * ** * * **** *** *
20239139 G-T--CTAAGCTTAGTGTTGAAGTTTAT-AAAAAATAAAAAAGAAAACAT-AAATGA--CACTT-
387 GCTCACT-A-CTTA-TATAGAGGACTATGATACAATTTGGAA-ATCGCATGAAAT-ATTTACTTG
* ** * ** * * ****
20239196 AAGAAGAC-TTTATC-CATTAAGCCATTCTTTAATGCAAAGGCGCTAGACATATTATATAGGAGT
447 AA-AAGGCAAGTATCTC--TAAG-GACCCTGT--TG---A---GC-AGACA-ATTGT-T-GCTCC
* * * * ** ** * ** * * ** * *
20239259 GTTGAGTAACAGACTAACTGAACCT-T--AACG-G-C-TCACTGCTTATATAAAGGAC-TGATAC
496 CTT--CT-TCA-CCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTT-T-T--TGTCCTTAATGC
** ** * * *** * * * ** * *
20239317 -AATTTGGAAATCGTATGAAATATTTACT-TGA-AAAGGCA-AGTATCTCTAAGGACCCTATTGG
553 TCCTTT-TCATTC-TTTTTCAT-TTCA-TATCAGATA-TTAGAGT-T-T-T-TGAACCCTA----
* * * * * *** * * *** * ** * ** *
20239378 GCAGACAATTGT-TG-CT-CCATTCCTTACCTTTCTTCA-CCTATG-CTACGTCCCTACTTTCCT
605 G-TGATAATTGTGTGTTTGGCGTT--TTTTGTTT-GTAAGGGGAGGAAGAAGT--CTA---AGCG
** * * * ** **** *** *
20239438 TTTTGTCCTTAATGCTCCTT-T-TC-ATTCTCTTTCATTTCATATCA-GATA-TT-AG-AG---T
661 TAGTGT--TGAA-G-T--TTATAACAAATAACAAAGAAAACATA-AATGATACTTAAGAAGACTT
* * * * **** * * * ** *
20239493 T-TT--TGAACCCTAGT-GTTAATTGTGTGTTTGGCG-TTTCTCAT-TTGTA-AGG-G-GAGGAG
719 TATTCATTAAGCC-ATTCTTTAA---TG-CAAAGGCGCTGT-ACATATTATATAGGAGTGTTGAC
* ** *** ** * * * * * **
20239549 GAAGTG-C-AAGC-GTAGTGTTGAA-GTTTATAACAAATAACAAAGAAAACATAAATGATA
778 TAACAGACTAA-CTG-AACCTT-AACG--GCTAACTACTTATATAGAGGAC-T--ATGATA
** ** * ** * * * ** **
20239606 C--TTAAGAAGACTTTATTCATTAAGCCATTCATTAATGCAAAGGCGTTGTA-CATACTATATTA
1 CAATTTGGAA-A---T-CGCATGAA-ATATTTACT--TGAAAAGGC-AAGTATC-T-CTA-AGGA
*** * * * * * * ** * *
20239668 GAGTGTT-AACTA-AC-AGTG-TAACTGAACCTTAACGGCTAACTACTTATATAAAGGACTATGA
54 CCCTGTTGAGC-AGACAATTGCT-GCTG--CCTT--C--TTCAC--CTT-TCTTCA--CCTATGC
* * * *** *
20239729 TACAATTTGGAAATCGCATGAAATATTTACTTAAAAGGGCAAGTCTCTCTAAGGGC-CCTGTTGG
106 TAC------G---T-GCCT----TCTTTCCTT-------TTTGTC-CT-TAA-TGCTCCT-TT--
* ** ** ** * ** ** * * * ** **
20239793 GCAGACAATTGTTGCTCCCTTC-T-TCACCTTTCTTTA-CCTATGCTACGTCCCT-TTTTTCCTT
144 TCATTC--TT-TT--TCATTTCATATCAGATAT-TAGAGTTTTTG--A--ACCCTAGTGAT-AAT
* * * * * * * **** ** * *
20239854 TTTGTCCTTAATGCTCCTTTTCATTCTTTTTTATTTCATATAAGATA-T-T-AGAGT--TTTTGA
198 TGTGT-GTT--TG-GCGTTTT--TTGTTTGTAAAGGGA-GGAAGA-AGTCTAAGCGTAGTGTTGA
*** * * ***** **** **** * * * * *
20239914 ACCCTAGTGA-TAAT-TGTGTGTTTGGCATTTTTTG-T-TTGTAAGGGAGGA-GTAAGTC--TAA
255 AGTTTA-TAACAAATAACAAAG-AAAACA-GAAATGATACT-TAA--GAAGACTTTATTCATTAA
* * * ** ** * * ** * * * * * ** *
20239972 GCGCAGTGTTGAAGTTTATAA--CAAAT-AACAAAGAAAATAGAAATGAT-A-TTA-AGAAGAAT
314 GC-CATTCTTTAA-TGCA-AAGGC-GCTGTACATATTATATAGGAGTGTTGACTAACAGACTAAC
* * * * * * * *
20240031 TTATTCATT-A-GGC-CA-TTCTTTAATGCAAAGGCACTGTACATATTATATCAGAGTGTTGACA
375 TGA-ACCTTAACGGCTCACTAC-TT-AT--ATA-G-A--GGAC-TATGATA-CA-A-T-TTG-GA
* * * * ** * * **
20240092 AATAG-ACT-AACTA--AACCTT--AACGGCTAACAACTTATGTAGAGGACTATGATACAATTTG
425 AATCGCA-TGAAATATTTA-CTTGAAAAGGC-AAGTA--TCTCTA-AGGACCCTG-------TT-
* * ***** * *** * *
20240151 GAAATCGCATGAACTATTAATTTAAAAAGGGAAGTATCTCTAGGGACCCTATTGGGCAGACAATT
476 G--A--GCA-G-ACAATT--GTT-----GCTCCCT-TCT-T---CA-CCT-TTCTTCA-CCTA-T
* * * ** *
20240216 GTTGC-TCCCTTC-TTCACTTGTCTTCACCTATGCTACATGCCTTCTTTCCTTTTGGTCGTTAAT
519 GCTACGTGCCTTCTTTC-CTT-T-TTGTCC--T--TA-ATG-C-TC--C---TTT--TC----AT
* * * *
20240279 GCTCATTTTCATTCTTTTCCATTCTATATCGGATATTAGAGTTTTTGAACCCAAGTGACAATTGT
563 --TC--TTT--TTC--AT---TTC-ATATCAGATATTAGAGTTTTTGAACCCTAGTGATAATTGT
* * * * **
20240344 GTGTTTGGCGTTTTTTGTTTTTCAGGGGAGGAAGAATTTTAAGCACAGTGTTGAAGTTTATAACA
616 GTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACA
* * * * * * *
20240409 AATAACTAAGAAAATAAAAATGATACCTAAGAAGACATTCTTCATTAAGTCATTCTTTAATGCAA
681 AATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAA
* * *
20240474 AGGCACTGTACATATTATATAGGAGTGTTGACTAACAGATTAACTGAACCTTAACGGTTAACTAC
746 AGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTAC
* * ** *
20240539 TCATATATAAAACTATGACA
811 TTATATAGAGGACTATGATA
* * * * * *
20240559 CAATTTAGAAATCACATTAAATATTTACTTGAAAAAGCAAGTACCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
20240624 GACAATTGATGTTGCCTTCTTCACCGTTCTTCACCTATGCTACATGTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
20240689 TTAATGCTCCTTTTCATTCTTTTTAATTTCATATCAGATATTAGAGTTTTTGAACCTTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * ** *
20240754 ATTGTGTGTTTGGCATTTTTTTTGTTTTTAAAGGGAGGAAGGAGTTTAAACACAGTGTTGAAATT
196 ATTGTGTGTTTGGC--GTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
*
20240819 TATAACATATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
20240884 AATGCAAAGGCGTTGTACATATTCTATAGGAGTGTTGACTAACAGACTAACTGAACCTTCAGGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* * *
20240949 TCACTACTTATATAGAGGACTATGATGCAATTTAGAAATCGCATGAAATATTTACTTGAAAAGAC
389 TCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGC
* * * *
20241014 AAGTATCTCTAAGGACCCGGTTGAGCAGACAATTGCTACTCCCTTCTTCACTTTTCTTCACCTAT
454 AAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTAT
** *
20241079 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTTATTGTT-ATTCTTTTTCATTCCATATCAG
519 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTT-TTCATTCTTTTTCATTTCATATCAG
* * * * *
20241143 ATATTAGAGTTTTCGAACCCTGGT-AAATATTGTGTGTTTGGCGTTTTTAGTTTGTAAGGGGTGG
583 ATATTAGAGTTTTTGAACCCTAGTGATA-ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
*
20241207 AAGAAGTCTAAGCTTAGTGTTG--G--------AAAT------G---------A--A-ACTTAAG
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* * **
20241244 AAGACTTTATTCATAAAGCCATCCTTTAATGCAAAGGCATTGTACATATTATATAGGAGTGTTGA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* * *
20241309 CTAACAGACTTATTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGGTA
777 CTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
20241363 TAATTTAGAAATCACATGAATTATTTACTTGAAAAGGGATGTATCTCTAAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20241428 GACAATTGCTGCT-CGCTTCTTCACCTTTCTTCATCTATGTTACGTGCCTTCTTTCCTTTTTATC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
20241492 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
20241557 AATTGTGTGTTTGGCGTTTTTTGATTGTAAGAGGTG-GG-GGAAGTCTAAGCGTAGTGTTGAAGT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAA-AGG-GAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
20241620 TTATAAAAAATAAAAAAGAAAACATAAATAATACTTAAAAATACTTTA-TCGATTAAGCCATTCT
258 TTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTC-ATTAAGCCATTCT
* * * *
20241684 TTAATGCAAAAGCGCTCTACATATTATATAGGAGTGTTGAGTAACAAACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* *
20241749 GCTCACTACTTATAT-----A--ATGATACAATTTGGAAATCGTATGAAATATTTACTTGAAGAG
387 GCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAG
** * * *
20241807 GCAAGTATCTCTAAGGACGTTGTTGGGCAGCCAATTGTTGCTCCTTTCTTCACCTTTCTTCACCT
452 GCAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCT
* *
20241872 ATGCTACGTCCCTTCTTTCCTTTTTGTCCTAAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* *
20241937 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAATGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* * * * * *
20242002 AGGAAGTCTAAGCGTAGTGTTGATGTTTATAAAAAATAACAAAGAAAACAAAAATGATATTTAAT
647 AAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAG
* *
20242067 AAGACTTTATTCATTAAGCCATTCATTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGA
712 AAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGA
* *
20242132 GTAACAGACTAACT-AATCCTTAACGGCTCACTACTTATATAGAGGACTATGATA
777 CTAACAGACTAACTGAA-CCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
20242186 CTATTTAGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* ** * *
20242251 GACAATTG-TGGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGACCCTTCATTCTTTTTTGTC
66 GACAATTGCT-GCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20242315 CTTAATGCACCTTTCCATTCTTTTTCATTTCATATCAGATATTATAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
*
20242380 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG-AGAAAGTCTAAGCGTAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
* * *
20242444 TATAACAAATAACAAAAAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCATT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * *
20242509 AATGCAAAGGCACTGTACATATTATATTA-GAGTGTTGACTAACAGAGTAACTGAACCTTAACAG
324 AATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * * *
20242573 CTAACTACTTATACAAAGGACTATGATACAATTTAGAAATCGCATGAAATATTTACTTGAAAAGG
388 CTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGG
* * * * * *
20242638 CAATTATCTATAAGGGCCCTGTTGGGCAAACAATTGGTT-CTCCCTTCTTCACCTTTCTTCACAT
453 CAAGTATCTCTAAGGACCCTGTTGAGCAGACAATT-GTTGCTCCCTTCTTCACCTTTCTTCACCT
* * *
20242702 ATGCTACGTCCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTTATTTCTTATCA
517 ATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCA
* *
20242767 GATATTAGAGTTTTTGAACCCTAGTGATAATTATGTGTTTGGCGTTTCTTGTTTGTAAGGGGAGG
582 GATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG
* *
20242832 -AGTAAGTCTAAGCGTAGTGTTGAAGTTTGTAACAAATAACAAAGAAAACATAAATGATACTTGA
647 AAG-AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAA
* * * *
20242896 GAAGACTTTATTCATTAAGTCATTCATTAATGCAAAGGCGCTGTATATATTATATTA-TAGTGTT
711 GAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTT
* * * * *
20242960 GACTTACAGAGTAAATGAACCTTAAGGGCTAACTACTTATATAAAGGACTATGATA
775 GACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
20243016 CAGTTTGGAAATCACATGAGATATTTACTTGAAAAGGAAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20243081 GACAATTGATGCTGCCTTCTTCACCTTTTTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20243146 TTAATGCTCATTTTCATTCTTTTTCATTTCAGATCAGATATTAGAGTTTTTGACCCCTAATGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * * *
20243211 ATTGTGTGTTTGGAATTTTTTGTTAGT-AAGGCACGGAAGAAGTCTCAGCGAAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGA-GGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
20243275 ATAACAAATAACAAA-AAAATAGAAATGATACTTAAAAAGACTTTATTCA-TAATCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
20243338 ATGCAAAGGCACTATACATATTATATCGGAGTGTTGACTAACATACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * *
20243403 AACTACTTATATAGAGGACTATGATACAATTTGGAAACCGAATGAAATTTTTACTTGAAAAGG-A
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * * *
20243467 CAGTATCTCTAAGGACCCTGTTGAGTAGACAATTGCTGCTCCATTCTTCACATTTCTTCACCTAT
455 -AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTAT
* * * * *
20243532 GCTACGTGCCTTCTTTCCATTTTGTCCTTAATGCTCATTTTTATTCTTTTCCATTTTATATCAGA
519 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGA
*
20243597 TATTAGAGTTTTTAAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
584 TATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * * *
20243662 GAATTTTAAGCGCAGTGTTGAAGTTTATAACAAATAACAAAGAAAATAAAAACGATACTTAAGAA
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAA
* * *
20243727 GACTTTCTTCATTAAGTCATTCTTTAATGTAAAGGCGCTGTACATATTATATAGGAGTGTTGACT
714 GACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACT
* ** * *
20243792 AACAGACTAACTGAACCTTAACGGCTAACTACTTATATATAAAATTATGACA
779 AACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
20243844 CAATTTAGAGATTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20243909 AACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
20243974 TTAATGCT-CTCTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTAAACCCTAGTGAT
131 TTAATGCTCCT-TTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
20244038 AATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAAGAAATCTAAGCGCAGTGTTGAAATTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20244103 ATAACAAATAACAAAGAAAACAAAAATTATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * *
20244168 ATGCAAAGGTAATGTACATATTATATCGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGTT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * * * *
20244233 AACTACTTATACAGAGGACTATGATACAATTTGGAAATCGCTTGAACTATTTATTTGAAAAGGGA
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* ** *** * *
20244298 TGTATCTCTTAA-GATTCTGTTTTCCAGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTAC
455 AGTATCTC-TAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTAT
* * *
20244362 GCTACTTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGT
519 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGA
* * *
20244427 TATTAGAGTTTTTGAACCCTAGTGATAATTGTATGTTTGGC-ATTTTT-TTTGTATGGGGAGGAA
584 TATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * * *
20244490 GAATTCTAAGTGCAGTGTTGAAGTTTATAACAAATAACAAAGAAAATAGAAATGGT-CTTAAGAA
649 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAA
** * * *
20244554 GACCATATTCATT-AGTCCATTCTTTAATGCAAAGGCACTGTACATGTTATATCA-CAGTGTTGA
714 GACTTTATTCATTAAG-CCATTCTTTAATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGA
** *
20244617 -TAAACAGACTAACAAAACCTTAACGGCTAACTACTAATATAGAGGACTATGATA
777 CT-AACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
20244671 CAATTTGGAAATCGCATGAACTATTTATTTTAAAAGGGAAGTATCTCTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20244736 GACAATTGCTACTGCCTTGTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20244801 TTAATGCTCCTTTTCATTATTTTTCATTTCATATAAGATATTAGAGTTTTTTACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* ** * * * *
20244866 ATTGTGTATTTTACGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGCATAGTGCTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
20244931 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTAATCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * *
20244996 TGTAAAGGCGTTGTA-ATATTATATCGGAGTGCTGACTAATAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTC
* ** * *
20245060 ACTACTAATATAGAGGACTATGATACAATTTGGAAATCGCATGAACCATTTATTTGAAAAGGGAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
* * * * * * * *
20245125 GTATCTTTAAGGATCCTATTGTGCAGACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTCTTC
456 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
* * * *
20245190 TACGTGCCTTCTTTCCTTTTTGTCCTTAATTCTCATTTTTATTCTTTTTCATTCCATATCAGATA
521 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
*
20245255 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGTGGAAGA
586 TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
* * * * *
20245320 AGTCTACGCTTAGTGTTGAAGTTTATAACAAATAACAATGAAAACATAAATGAAACTTAGGAAGA
651 AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
* *
20245385 CTTTATTCATAAAGTCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
716 CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
* *
20245450 CAGACTAACTGAACCTTAACGGCTAACTACCTGTATAGAGGACTATGATA
781 CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
20245500 CAATTTGGAAATCGCATGAATTATTTACTT-AAAGGGGGATGTATCTCTAAGGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAA-AGGCAAGTATCTCTAAGGACCCTGTTGAGC
* *
20245564 AGACAATTTCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTT-CTTTTT-TC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
**
20245627 CTTAATGCAACTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * * *
20245692 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGGGAGCAAGAAGTTTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * **
20245757 ATAACAAATTACAAAGAAAACATAAATGATATTTAAGAATACTTTATTCATTAAGCTGTTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** *
20245822 ATGCAAAGGCACTGTACATATTATATAATAGTGTTGACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * * * * * *
20245887 AACTACTTATATATAGCACTAAGATACAAATTGTAAATCGCATGAAATATTTACTTAAAAAGGCA
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* ** *
20245952 AGTAACTCTAAGGACCCTGTTGAGTTGACAATTGCTGCTCCCTTCTTCACC--T-TT---CT-T-
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
*
20246009 C-AC-T---TTC--T--TTTTTGTCCTTAATGCTCCTTTTTATTCTTTTTCATTTCATATCAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * *
20246065 GTTAGAATTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTATTTGTAAGGGGAGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * * * * * *
20246130 AAGTCTAAGTGCAGTATTCATGTTTATAATAAATAAGAAAGAAAACATAAATGATACTTAAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
* * * *
20246195 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGTGCTGTGCATATTATATCGGAGTGCTGACTA
715 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
* *
20246260 ACAGACTAACTAAACCTTAAAGGCTAACTACTTATATAGAGGACTATGATA
780 ACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
*
20246311 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTGAGGACCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20246376 GACAATTGCTGCTCCCTTCTGCTCCCTTATTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTC
66 GACAATTGCTG-------CTG---CCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTC
* * * * * * *
20246441 CTTTTCGTCGTTAAGGCTCATTTTTATTCTTTTTCATTCCATATCAGATATTGGAGTTTTTGAAC
121 CTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAC
* * * **
20246506 CCTAGTGATAATTGTGTGTTTGGCATTTTTAT-TTTGTAATGAGAGGAAGAAGTCTAAGTTTAGT
186 CCTAGTGATAATTGTGTGTTTGGCGTTTTT-TGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGT
* * * * * *
20246570 GTTGAAGTTTATTACAAATAACAAAGAAAACATAAATGAAACTTAAAAAGTCTTTATTCATAAAG
250 GTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAG
* *
20246635 CCATTCTTTAATGCAAAGGCGCTATACATATTATATAGGAGTGTCGACTAACAGACTAACTGAAC
315 CCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAAC
* * *
20246700 CTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTGAAAATCGCATGAATTATTTACT
380 CTTAACGGCTCACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACT
*
20246765 TGAAAAGGCAAGTATCTCTAAGGACCCTATTGTA-CAGACAATTGTTGCTCCCTTCTTCA-CTTT
445 TGAAAAGGCAAGTATCTCTAAGGACCCTGTTG-AGCAGACAATTGTTGCTCCCTTCTTCACCTTT
*
20246828 CTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGACCTTAATGCTCCTTTTCATTCTTTTTCATT
509 CTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATT
* * * * *
20246893 TCATATCAAATATTAGAGTTTTTGACCCCAAGTGATAATTGTGTGTTTTGCATTTTTTGTTTGTA
574 TCATATCAGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTA
* * *
20246958 AGGAGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAAGAGAAATGA
639 AGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGA
* * *
20247023 TACTTAAGAAAACTTTATTGATTAAGCCATTCTTTAATGCAAAAGCGCTGTACATATTATATAGG
704 TACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGG
* * * *
20247088 AGTGTTGACTAACAAACTAACTGAACCTTAACGACTCACTACTTATATAGAGGACTATGACA
769 AGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * *
20247150 CAATTTCGAAATCACATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * **
20247215 GACAATTGCTGCTCCCTTCTTCATCTTTCTTTACCTATGCTACGTTTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20247280 TTAATGCTCGTTTTCATTCTTTTTCATTGCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
20247345 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * * *
20247410 TAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCATTA
261 TAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * * *
20247474 ATGCAAAGGTATTGTACATATTATATAAGAGTGTTGACTAACAGACTAACTGAACCTTAATGTCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *** * *
20247539 AACTACTTATATAGAGGACTATGATACAATTCAAAAATCGCATGAAATTTTTACTTAAAAAGGCA
390 CACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA
* * *
20247604 AGTATCTCTAAGGACCCTGTTGAGTAGACAATTGTTGTTCTCTTCTTCACCTTTCTTCACCTATG
455 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATG
* * * * * * *
20247669 CTACGTACCTTCTTTCTTTTTTATCCTTGATGCTCCTTTTTATTCCTTTTCATTTCATATTAGAT
520 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
*
20247734 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAAG
585 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * *
20247799 AAGTCTAAGCGCAGTGTTGATGTTTATAACAAATAACAAAGAAAACATAAATGATACTTTAGAAG
650 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAG
20247864 ACTTTATTCATTAAGCCATTCTTTAAT
715 ACTTTATTCATTAAGCCATTCTTTAAT
20247891 AACCAAATTA
Statistics
Matches: 12553, Mismatches: 1859, Indels: 1022
0.81 0.12 0.07
Matches are distributed among these distances:
794 2 0.00
795 225 0.02
796 2 0.00
797 2 0.00
801 2 0.00
802 156 0.01
803 6 0.00
804 297 0.02
805 5 0.00
807 1 0.00
809 196 0.02
810 1 0.00
811 331 0.03
812 3 0.00
813 166 0.01
815 5 0.00
816 2 0.00
817 1 0.00
818 4 0.00
819 111 0.01
820 127 0.01
821 245 0.02
822 23 0.00
823 989 0.08
824 64 0.01
825 114 0.01
826 260 0.02
827 819 0.07
828 2045 0.16
829 1426 0.11
830 2862 0.23
831 401 0.03
832 84 0.01
833 2 0.00
834 1 0.00
835 196 0.02
836 1 0.00
837 1 0.00
838 5 0.00
839 337 0.03
840 13 0.00
841 3 0.00
842 12 0.00
843 10 0.00
844 14 0.00
845 10 0.00
846 10 0.00
847 1 0.00
848 9 0.00
849 6 0.00
850 22 0.00
851 21 0.00
852 20 0.00
853 23 0.00
854 11 0.00
855 1 0.00
856 10 0.00
857 11 0.00
858 10 0.00
859 11 0.00
860 13 0.00
861 11 0.00
862 11 0.00
863 15 0.00
864 12 0.00
865 8 0.00
866 2 0.00
867 4 0.00
869 3 0.00
870 4 0.00
871 3 0.00
872 7 0.00
877 1 0.00
878 1 0.00
879 5 0.00
880 1 0.00
881 4 0.00
882 3 0.00
883 1 0.00
885 1 0.00
886 9 0.00
893 15 0.00
894 13 0.00
895 9 0.00
896 10 0.00
897 10 0.00
898 19 0.00
899 12 0.00
900 17 0.00
901 49 0.00
902 21 0.00
903 19 0.00
904 17 0.00
905 26 0.00
906 19 0.00
907 14 0.00
908 38 0.00
909 17 0.00
910 12 0.00
911 14 0.00
912 11 0.00
913 7 0.00
914 8 0.00
915 10 0.00
916 7 0.00
917 3 0.00
919 1 0.00
920 7 0.00
921 14 0.00
922 2 0.00
923 1 0.00
924 1 0.00
925 7 0.00
926 2 0.00
927 3 0.00
928 2 0.00
929 1 0.00
931 1 0.00
933 2 0.00
934 2 0.00
935 15 0.00
937 3 0.00
938 3 0.00
939 2 0.00
940 4 0.00
942 1 0.00
944 10 0.00
945 9 0.00
946 10 0.00
947 15 0.00
948 13 0.00
949 9 0.00
950 8 0.00
951 7 0.00
952 1 0.00
953 12 0.00
954 28 0.00
955 24 0.00
956 20 0.00
957 19 0.00
958 5 0.00
959 10 0.00
960 1 0.00
961 5 0.00
962 4 0.00
963 5 0.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (830 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTC
ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA
GTATCTCTAAGGACCCTGTTGAGCAGACAATTGTTGCTCCCTTCTTCACCTTTCTTCACCTATGC
TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATA
TTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGA
AGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGA
CTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAA
CAGACTAACTGAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
Found at i:20235803 original size:415 final size:415
Alignment explanation
Indices: 20232143--20247890 Score: 15333
Period size: 415 Copynumber: 37.8 Consensus size: 415
20232133 AGAGAGGAAT
* *
20232143 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
20232208 GACAATTG-T--TG----C-TC-CC-TTCTTCACCTACGCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
20232263 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
20232328 ATTATGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
20232391 ATAACAAATAACAAAGAAAACAGAAATGATACTTGAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
20232456 ATGCAAAGGCGTTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
20232521 CACTACATATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
** * *
20232547 CAATTTGGAAATCAAAAGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACTCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20232612 GACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTATGCTACGTGCTTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20232677 ATAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGATATTA-ATGTTTTTGACCCCTAGTGAT
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGA-GTTTTTGAACCCTAGTGAT
* * *
20232741 AATTATGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20232806 ATAACAAATATTA-AAAAAAAATAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
260 ATAACAAATA--ACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* * * * * *
20232870 TAATGCAAAGGCACTATACATATTATATAGAAGTGTTGACTAACAGACTAACTCAACCATAACGA
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
20232935 CTAACTACTTATATAGAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* *
20232963 CAATTTGGAAA-CTGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGC
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
20233027 AGACAATTGCTGCTCCCTTCTTC-CCATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
65 AGACAATTGCTGCTGCCTTCTTCACC-TTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* *
20233091 CCTTAATGCTCATTTTCATTCTTTTTCCTTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * *
20233156 TAATTGTGTGTTTGGCGTTTTTTGTTAGTAAGGGGAGGAAGAAGTCTAAGCCTAATGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
20233221 TATAACAAATAACAAAAAAAAAAAACAAAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
259 TATAACAAATAAC----AAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATT
* * * * * *
20233286 CATTAATGCGAAGGCGCTGTAGATATTATATAGGAGTGTTGACGAACAGATTAACTAAACCTTAA
320 CTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAA
* * *
20233351 CGGCTACCTACTTATACAGAGGACCATGATA
385 CGGCTAACTACTTATATAGAGGACTATGATA
* * * * *
20233382 CAATATGAAAATCGCATGAAATATTTACTTGAAAAGGCAACTATCTCTAAGGACCGTATTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20233447 GAGAA-T--TGATG----C-TC-CC-TTCTTCACCTATGCTACGTGCCTTCTTTCTTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
20233502 TTTATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAACCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
20233567 ATTTTCTGTTTGGC-TTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGATGCTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
20233631 TAACAAATAACAATGAAAACATAAATGATACTTAAGAATACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * * *
20233696 TTCACAGGCACTGTACATATTATATAAGAGTGTTGACTAATAGACTAACTTAACCTTAAAGCCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
20233761 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* *
20233786 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGAATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
*
20233851 GACAATTGCTGCTG---------CC-TTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTTTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20233906 TTAATTCTCCTTTTCATTCTTTTTCATTTCATATCAGATATCAGAGTTTTTGACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * * *
20233971 ATTGTGTGTTTTGCGTGTTTTCTTTGTAAAGGGAGGAAGAATTCTAAGCGCAATGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
20234036 TAACAAATAAAAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * * *
20234101 TGCAAAGGCACTGTATATATTATATCGGAGTGTTGACTAACAGAATAAATAAACCTTAACAGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
20234166 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * *
20234191 CAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCTTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * ** * * *
20234256 GACAATTGTTGCTCCCTTCTTTGCATTTCTTCACCTATGCTACGTACCTTCTTTCCTTTTTGTCG
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
20234321 TTAATGCTCATTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
20234386 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAGAAGTCTAAGTGCAGTGTTGATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
20234451 TAACAAATAACAAAAAAAAACATAAATGATACTTAAGAATACTTTATTCATTAAGCCATTCTTTA
261 TAACAAATAAC-AAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
20234516 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
20234581 AACTACTTAAATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* *
20234607 CAATGTGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
*
20234671 AGATC-ATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGT
65 AGA-CAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
*
20234735 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
** * * *
20234800 TAATTGTGTGTTTTACGTTTTTTATTAGTAAAGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * *
20234865 TATAAAAAATAACAAAGAAAAGAGAAATGAAACATATGAAGACTTTATTCATTAAGCCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * * *
20234930 AATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* * *
20234995 TCATTACTTATAAAGAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
20235022 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * * *
20235085 GGACAATTGTTGATCCCTTCTTCACCCTTCTTTACCTATGCTATGTGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20235150 CTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAA-CCTAGTAA
130 CTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * * * *
20235213 TAATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGGAAGAAGTCTAAGCTTAGTGTTGTAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
20235278 TATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCA-TAAGGCAATTCTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAA-GCCATTCTT
20235342 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * ** *
20235407 CTAACCACTTATATATAAAACTATGACA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * *
20235435 TAATTTGGAAATCACATTAAATATTTACATGAAAAGGCAAGTATATCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20235500 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * * *
20235565 TTAATGCTCTTTTTCATTCTTTTTCATTCCATAACAAATATTAGAGTTTTTGAACCATAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
20235630 ATTGTGTGTTTGGCATCTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
20235695 TAGCAAAGAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* *
20235760 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
20235825 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* *
20235850 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * **
20235915 GACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20235980 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
20236045 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAGGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
20236110 TCACAAATAACAAAGAAAACAGAGATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
20236175 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAATTGAACCTTAACGACTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* * *
20236240 ACTACTTATATAAATGACTATGGTA
391 ACTACTTATATAGAGGACTATGATA
* * * * * *
20236265 TAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-AATGTATCTCTGATGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA-GTATCTCTAAGGACCCTGTTGAGC
* * * * *
20236329 AAACAATTACTGCTTG-CTTCTTCACCTTTCTTCACCTATACTATGTTCCTTCTCTT-CTTTTTG
65 AGACAATTGCTGC-TGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCT-TTCCTTTTTG
* * *
20236392 TCCTTAATGCTCATTTTCATTCTTTTTCATTTCATATTAAATATTAGAGTTTTTGAACCCTAGTG
128 TCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
** * *
20236457 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
20236522 TTTTAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCT
258 TTATAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * * *
20236586 TTAATGCAAAGGCACTATACATATTATATAGGAGTGTTAAGTAACAAACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
*
20236651 GCTCACTACTTATATAGAGGACTATGATA
387 GCTAACTACTTATATAGAGGACTATGATA
* * *
20236680 CAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** * * * *
20236745 GACAATTTTTGCT-CTCTTTTTTACCTTTCTTCACCTATGCTACGTCCCTACTTTCCTTTTTGTC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20236809 CTTAATGCTCCTATTCATTCTTTTTTATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
20236874 AATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGGAGGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
20236939 ATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
20237004 ATGCAAAGGCGTTGTACATATTGTATAGGAATGTTAACTAACAGACTAACTTAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* **
20237069 CACTACTTATATAGAAAACTATGATA
390 AACTACTTATATAGAGGACTATGATA
*
20237095 CAATTTGGAAATCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20237158 GGACAATTGCTGAT-CACTTCTTCACCTTTCTTCACCTATGCTACGTGCATTCTTTCCTTTTTGT
66 -GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* * * * *
20237222 CCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCACATATTAGAGTTTTTGAACTCTAGTA
129 CCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * * * * *
20237286 ATAATTGTGTATTTAGCATTTTTTATTTGTAAGGAGAGGAAGAAGTCTAAGCATAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* * *
20237351 TTATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCTT
258 TTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* * * *
20237416 TAATGCAAAGGCGTTGCACATATTGTATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
*
20237481 CTCACTACTTATATAGAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * * *
20237509 AAATATGGAACTCGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTATTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20237572 GGACAATTACTGCTACCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20237637 CTTAATGCTCCATTTCATTCTTTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
20237702 AATTGTGTGTTTGGC-TTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
20237766 ATAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** * * * * *
20237831 ATGTAAAGGTACTGTACATATTTTATAGCAGTATTCACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
20237896 AAATACTTATATAGAGAACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * * *
20237922 CAATTTGGAAATCGC-TTAAATTCTTTACTTAAAAAGGCAAGTATGTCTAAAGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAA-TATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* * *
20237986 AGAAAATTGCTACTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
20238051 ATTAATGGTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGACCCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* *
20238116 AATTGTGTGTTTGGCGTTTTTTCTTTGTAAGGGGAGGAAAAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20238181 ATAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
20238246 ATGCAAAGGCGTTGTACATATTATATAGGAGCGTTGACTAATAGACTAACAGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
20238311 CATTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * *
20238337 CAAATTAGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * **
20238402 GACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20238467 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACACTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
20238532 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
20238597 TAACAAATAACAAAGAAAACAAAAATGAAACTGAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * *
20238662 TGCAAAGGTGTTGTACATATTATATAGGAGTGTTGACTACCAGACTAATTGAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
20238727 ACTACTTATATAGATGACTATGGTA
391 ACTACTTATATAGAGGACTATGATA
* * * * * * * *
20238752 TAATTTGGAAATTGCATGAATTACTTACTTGAAAAGGGATGTATCTCTGAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20238817 AACAATTGCTGCT-CGCTTCTTCACCTTTCTTCACCAATGCTATGTGCCTTCTTTCCTTTTTGTC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
20238881 CTTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * *
20238946 AATTGTGTGTTTGGAGTTGTTTGTTTGTAAGGGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
20239011 ATAAAAAATAAAAAAGAAAACATAAATGACACTTAAGAAGACTTTATCCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * *
20239076 ATGCAAGGGTGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAA-CTGGAA-GAA
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCT-TAACG--
* * * * ** *
20239139 GTCTAA--GCTTAGTGTTGAAGTTTAT-AAA
387 G-CTAACTACTTA-TATAGAGGACTATGATA
* **** *** * * ** * *
20239167 AAATAAAAAAGAAAACAT-AAATGA--CACTT-AAGAAGAC-TTTATC-CATTAA-G-CCATTCT
1 CAATTTGGAA-ATCGCATGAAAT-ATTTACTTGAA-AAGGCAAGTATCTC--TAAGGACC-CTGT
* ** * * **** * * * *
20239224 TTA--ATG-CAAAGGC-GCTAGACATAT-TATATAGGAGTGTTGA-GTAACAGACTAAC-TGAAC
60 TGAGCA-GACAATTGCTGCT-G-CCT-TCT-T-CACCTTTCTTCACCT-A-TG-CT-ACGTG--C
** ** * * * * * ** * * *** *
20239282 CTTAACGGCTCACTGCTTAT-ATAAAGGACTGATACAATTTGGAAATCGTATGAAATATTTACT-
113 CTT--C-TTTC-CTTTTTGTCCT-TA--A-TGCT-C-CTTT-TCATTC-TTTTTCAT-TTCA-TA
* * ** * * * * * * * **
20239345 TGA-AAAGGCA-AGTATCTCTAAGGACCCTATTGGGCAGACAATTGT-TG-CT-CCATTCCTTAC
164 TCAGATA-TTAGAGT-T-T-T-TGAACCCTA----G-TGATAATTGTGTGTTTGGCGTT--TTTT
* * * *** * ** * ** * ** * * * **
20239405 CTTTCTTCA-CCTATG-CTACGTCCCTACTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTC-TC
217 GTTT-GTAAGGGGAGGAAGAAGT--CTA---AGCGTAGTGT--TGAA-G-T--TTAT-A-ACAAA
** *** * * * * * * ** ** * * * ** ***
20239467 TTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGTTAATTGTGTGTTTGGCGTTTCTC
268 TAACA-AAGAAAACAGAAATGATA-CTTAAGAAGACT-TTATTCATTAAGCCATT--C--TT-T-
* * ** * * * ** * * *
20239532 ATTTG-TAAGG-GGAGGAGGA-AGTGCA-AGCGTAGTGTTGAAGTTTATAACA-AATAACAAAGA
324 A-ATGCAAAGGCGCTGTA-CATATTATATAG-G-AGTGTTG-A----CTAACAGACTAAC--TG-
* * * * * * *
20239592 AAACATAA---ATGA-TAC-T-TA-AGAAGACT-TTATT
377 AACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * * ** ** ***
20239623 C-A-TT---AAGC-CAT----TCA-TTA-ATGCAAAGGCGTTGTA-CATACTATATTAGAGTGTT
1 CAATTTGGAAATCGCATGAAAT-ATTTACTTGAAAAGGC-AAGTATC-T-CTA-AGGACCCTGTT
* * * * * ** * * * * **
20239675 -AACTA-AC-AGTG-TAACTGAAC--CTTAACGGCTAAC-T-ACTTAT-ATAAAG-GACTATGAT
61 GAGC-AGACAATTGCT-GCTG-CCTTCTTCAC--CTTTCTTCACCTATGCT-ACGTGCCT-TCTT
* ** * * ** * ** * * * * *** * *
20239730 ACAATTTGGAAATCGCATGAAATATTTACTTAAAAGGGCAAGTCTCTCTAAGGGCCCTGTTGGGC
119 TCCTTTTTG---TC-C-T-TAAT-GCTCCTT-----TTC-ATTCTTTTTCA-TTTCAT-AT---C
* * * * ** * ** * *** ** * *
20239795 AGACAATT-GTTGCTCCCTTCTT-CACCTTTCT-TTACCTATGCTACGTCCCTTTTTTCCTTTTT
166 AGA-TATTAG-AG-T---TT-TTGAACCCTAGTGATAATTGTG-TGTTTGGCGTTTTT--TGTTT
**** * * *** * * * ** * * * ** * *
20239857 GT--CCTTA--ATG--CTCCTTTTC--ATTCTT---TTTTATTTCATAT-A-AGATATTAGAGTT
221 GTAAGGGGAGGAAGAAGT-CTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAG-A
** * * * * * ** * * * **
20239909 TTTGA-ACCCTAGTGATA-A-TTGTGTGT--TT--GGCATTTTTTGTTTGTAAGGGAGGAGT--A
284 AATGATA-CTTA-AGA-AGACTT-TAT-TCATTAAGCCATTCTTT-AATGCAAAGGCGCTGTACA
* * * * * * * *** ** * *
20239965 -AGTCTA-AGCGCAGTGTTGAAGTTTATA-AC-AAAT-AA-C--AAAGAAAATAGAAATGATATT
343 TATTATATAG-G-AGTGTTG-A-CTAACAGACTAACTGAACCTTAACGGCTA-ACTACTTATA-T
* * *
20240022 AAGAAGAATTTATTCATTA
402 -AG-AGGA-CTA-TGA-TA
* * * * * *
20240041 GGCCATTCTTTAATGCAAA-GGCACTGTACATATTATATCAGAGTGTTGACAAATAGACTAACTA
1 ---CA---ATT--TGGAAATCGCA-TG-AAATATT-TA-C------TTG--AAA-AGGC-AAGT-
* * * ** * * * *
20240105 AAC-CTTAACGGCTAACAACTTATGTAGAGGACTATGATACAATT--TG--GAAATCGCATGAAC
43 ATCTC-TAA-GG---AC--C--CTGTTGA-G-C-A-G--ACAATTGCTGCTG-CCT-TCTTCACC
* * ** * ** * ** ** * * * **
20240165 TATTAATTTA-AAAAGGGAAGTATC-TCTAGGGACCCTATTGGGCAGACAATTGTTGCTCCCTTC
91 T-TT-CTTCACCTATGCTACGTGCCTTCT----TTCCTTTTTGTC---C--TTAATGCT-CCTT-
* * **** ** ** * * * *
20240228 TTCA--CTTGTCTTCACCTATGC-TA-CATGCCT-TCT-TTCCTTTTGGTCGTTAATGCTCATTT
143 TTCATTCTT-T-TTCA--T-TTCATATCA-G-ATAT-TAGAGTTTTTGAACCCTAGTGATAATTG
* * ** * * * ***** * **
20240287 TCATTCTTTTCCATTCTATATCGGATAT-TAGAGTTTTTGAACCCAAGTGAC-AATTGT-GTGTT
200 T--GTGTTTGGCGTT-T-T-T-TG-TTTGTA-AGGGGAGGAA--GAAGT--CTAAGCGTAGTG-T
** ***** ** ** ** ** * *
20240349 TGGCGTTT-T-TTGTTTTTCAGGGGAGGA-AG-AAT--T--TTAAGCACAGTGTTGAAGTTTA-T
252 TGAAGTTTATAACAAATAACA-AAGAAAACAGAAATGATACTTAAG-A-AGACTT-TA-TTCATT
* * *** * ***** * * * * * * * **
20240405 AA-CAAATAACTAA-GAAAATAAAAATGATACCTA--AGA-AGACATTCTTCATTAAGTCATTCT
312 AAGCCATTCTTTAATGCAAA-GGCGCTG-TACATATTATATAG-GAGTGTTGACTAA--CAGAC-
**** * *
20240465 TTAA-TGCAA-AGGCACTG-T-ACATA-TTATATAGGAGTGTTGACTAACAGATTAA
371 -TAACTG-AACCTTAACGGCTAAC-TACTTATATA-GA--G--GACT-A-TGA-T-A
* * * * ** *** * *
20240517 CTGAACCTTAACGGTTAACTACTCAT-ATATA-AAACTATGACACAA-TTTAGAAATCACATTAA
1 C--AA--TT--TGG--AAAT-CGCATGAAATATTTACT-TGA-A-AAGGCAAG-TATCTC--TAA
** ** * * * ** * * * * *** * **
20240579 ATA-TTTACTTGA-AAAAGCAAGTACCT-CTAAGGGCCCTGTTGAGCAGACAATTGATGT-TGCC
51 GGACCCT-GTTGAGCAGA-CAA-TTGCTGCT----GCCTTCTTCACCTTTC--TTCACCTATG-C
* * * * ** *
20240640 TTCTTCACCGTTCTTCACCTATGCTACATGTCTTCTTTCCTTTTTG-TCCTTAATGCTCCTT-TT
106 TACGT-GCC-TTC-T----T-T-C--C-T-T-TT-TGTCCTTAATGCTCCTT--T--TCATTCTT
* * * * * * * ** ** * *
20240703 CATTCTTTTTAATTTC--ATATCAGA-TATTAG-A-GTTTTTGA-ACCTTAGTGATAATTGTGTG
152 -TTTC-ATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA-ATT-GTG-T--GT-T---
* * * * * * ** * *
20240762 TTTGGCATTTTTTTTGTTTTTAAAGGGAGGAAGGAGTTTAAACACAGTGTTGAAATTTATAACAT
206 --TGGC--GTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAA
20240827 ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAA
267 ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAATGCAAA
* * * * *
20240892 GGCGTTGTACATATTCTATAGGAGTGTTGACTAACAGACTAACTGAACCTTCAGGGCTCACTACT
332 GGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACT
*
20240957 TATATAGAGGACTATGATG
397 TATATAGAGGACTATGATA
* * *
20240976 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGACAAGTATCTCTAAGGACCCGGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20241041 GACAATTGCTACTCCCTTCTTCACTTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
** * * * *
20241106 TTAATGCTTATTGTT-ATTCTTTTTCATTCCATATCAGATATTAGAGTTTTCGAACCCTGGT-AA
131 TTAATGCTCCTT-TTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
20241169 ATATTGTGTGTTTGGCGTTTTTAGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTG--G--
195 A-ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
20241230 ------AAAT-------------G--A--A-ACTTAAGAAGACTTTATTCATAAAGCCATCCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
** * *
20241271 AATGCAAAGGCATTGTACATATTATATAGGAGTGTTGACTAACAGACTTATTGAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
*
20241336 TAACTACTTATATAGAGGACTATGGTA
389 TAACTACTTATATAGAGGACTATGATA
* * * * * * *
20241363 TAATTTAGAAATCACATGAATTATTTACTTGAAAAGGGATGTATCTCTAAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20241428 GACAATTGCTGCT-CGCTTCTTCACCTTTCTTCATCTATGTTACGTGCCTTCTTTCCTTTTTATC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
20241492 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * **
20241557 AATTGTGTGTTTGGCGTTTTTTGATTGTAAGAGGTGGGGGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * * *
20241622 ATAAAAAATAAAAAAGAAAACATAAATAATACTTAAAAATACTTTA-TCGATTAAGCCATTCTTT
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTC-ATTAAGCCATTCTTT
* * * *
20241686 AATGCAAAAGCGCTCTACATATTATATAGGAGTGTTGAGTAACAAACTAACTGAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
*
20241751 TCACTACTTATAT-----A--ATGATA
389 TAACTACTTATATAGAGGACTATGATA
* * ** *
20241771 CAATTTGGAAATCGTATGAAATATTTACTTGAAGAGGCAAGTATCTCTAAGGACGTTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20241836 GCCAATTGTTGCT-CCTTTCTTCACCTTTCTTCACCTATGCTACGTCCCTTCTTTCCTTTTTGTC
66 GACAATTGCTGCTGCC-TTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
20241900 CTAAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * *
20241965 AATTGTGTGTTTGGTGTTTTTTGTTTGTAATGGGAGGAGGAAGTCTAAGCGTAGTGTTGATGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
20242030 ATAAAAAATAACAAAGAAAACAAAAATGATATTTAATAAGACTTTATTCATTAAGCCATTCATTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* *
20242095 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGAGTAACAGACTAACT-AATCCTTAACGGC
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAA-CCTTAACGGC
*
20242159 TCACTACTTATATAGAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
* * * *
20242186 CTATTTAGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* ** * *
20242251 GACAATTG-TGGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGACCCTTCATTCTTTTTTGTC
66 GACAATTGCT-GCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20242315 CTTAATGCACCTTTCCATTCTTTTTCATTTCATATCAGATATTATAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
20242380 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG-AGAAAGTCTAAGCGTAGTGTTGAAGTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTT
* * *
20242444 TATAACAAATAACAAAAAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCATT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* * *
20242509 AATGCAAAGGCACTGTACATATTATATTA-GAGTGTTGACTAACAGAGTAACTGAACCTTAACAG
324 AATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* *
20242573 CTAACTACTTATACAAAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * *
20242601 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGGCAATTATCTATAAGGGCCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * * *
20242666 AACAATTGGTTCTCCCTTCTTCACCTTTCTTCACATATGCTACGTCCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
20242731 TTAATGCTCCTTTTCATTCTTTTTTATTTCTTATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* *
20242796 ATTATGTGTTTGGCGTTTCTTGTTTGTAAGGGGAGG-AGTAAGTCTAAGCGTAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGTTT
* * * * *
20242860 GTAACAAATAACAAAGAAAACATAAATGATACTTGAGAAGACTTTATTCATTAAGTCATTCATTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * * *
20242925 ATGCAAAGGCGCTGTATATATTATATTA-TAGTGTTGACTTACAGAGTAAATGAACCTTAAGGGC
325 ATGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
*
20242989 TAACTACTTATATAAAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
* * * * *
20243016 CAGTTTGGAAATCACATGAGATATTTACTTGAAAAGGAAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20243081 GACAATTGATGCTGCCTTCTTCACCTTTTTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20243146 TTAATGCTCATTTTCATTCTTTTTCATTTCAGATCAGATATTAGAGTTTTTGACCCCTAATGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * * *
20243211 ATTGTGTGTTTGGAATTTTTTGTTAGTAA-GGCACGGAAGAAGTCTCAGCGAAGTGTTGAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGA-GGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
20243275 ATAACAAATAACAAA-AAAATAGAAATGATACTTAAAAAGACTTTATTCA-TAATCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
20243338 ATGCAAAGGCACTATACATATTATATCGGAGTGTTGACTAACATACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
20243403 AACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * *
20243429 CAATTTGGAAACCGAATGAAATTTTTACTTGAAAAGG-ACAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCA-AGTATCTCTAAGGACCCTGTTGAGC
* *
20243493 AGACAATTGCTGCT-CCATTCTTCACATTTCTTCACCTATGCTACGTGCCTTCTTTCCATTTTGT
65 AGACAATTGCTGCTGCC-TTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGT
* * * * *
20243557 CCTTAATGCTCATTTTTATTCTTTTCCATTTTATATCAGATATTAGAGTTTTTAAACCCTAGTGA
129 CCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * *
20243622 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAATTTTAAGCGCAGTGTTGAAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* * * * *
20243687 TATAACAAATAACAAAGAAAATAAAAACGATACTTAAGAAGACTTTCTTCATTAAGTCATTCTTT
259 TATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
*
20243752 AATGTAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
* ** * *
20243817 TAACTACTTATATATAAAATTATGACA
389 TAACTACTTATATAGAGGACTATGATA
* * * *
20243844 CAATTTAGAGATTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20243909 AACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACATGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
20243974 TTAATGCT-CTCTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTAAACCCTAGTGAT
131 TTAATGCTCCT-TTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * *
20244038 AATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAAGAAATCTAAGCGCAGTGTTGAAATTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20244103 ATAACAAATAACAAAGAAAACAAAAATTATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * *
20244168 ATGCAAAGGTAATGTACATATTATATCGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGTT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
20244233 AACTACTTATACAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * * ** ***
20244259 CAATTTGGAAATCGCTTGAACTATTTATTTGAAAAGGGATGTATCTCTTAA-GATTCTGTTTTCC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTC-TAAGGACCCTGTTGAGC
* * *
20244323 AGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTACGCTACTTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* *
20244388 CTTAATGCTCCCTTTCATTCTTTTTCATTTCATATCAGTTATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * * *
20244453 AATTGTATGTTTGGC-ATTTTT-TTTGTATGGGGAGGAAGAATTCTAAGTGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * **
20244516 ATAACAAATAACAAAGAAAATAGAAATGGT-CTTAAGAAGACCATATTCATT-AGTCCATTCTTT
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAG-CCATTCTTT
* * * **
20244579 AATGCAAAGGCACTGTACATGTTATATCA-CAGTGTTGA-TAAACAGACTAACAAAACCTTAACG
324 AATGCAAAGGCGCTGTACATATTATAT-AGGAGTGTTGACT-AACAGACTAACTGAACCTTAACG
*
20244642 GCTAACTACTAATATAGAGGACTATGATA
387 GCTAACTACTTATATAGAGGACTATGATA
* * * * * * *
20244671 CAATTTGGAAATCGCATGAACTATTTATTTTAAAAGGGAAGTATCTCTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
20244736 GACAATTGCTACTGCCTTGTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20244801 TTAATGCTCCTTTTCATTATTTTTCATTTCATATAAGATATTAGAGTTTTTTACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* ** * * *
20244866 ATTGTGTATTTTACGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGCATAGTGCTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
20244931 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTAATCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
20244996 TGTAAAGGCGTTGTA-ATATTATATCGGAGTGCTGACTAATAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
*
20245060 ACTACTAATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
** * * * * * *
20245085 CAATTTGGAAATCGCATGAACCATTTATTTGAAAAGGGAAGTATCTTTAAGGATCCTATTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20245150 GACAATTGCTGCTTCCTTCTTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
20245215 TTAATTCTCATTTTTATTCTTTTTCATTCCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
20245280 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGTGGAAGAAGTCTACGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * * *
20245345 TAACAAATAACAATGAAAACATAAATGAAACTTAGGAAGACTTTATTCATAAAGTCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
20245410 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
20245475 ACTACCTGTATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * * * *
20245500 CAATTTGGAAATCGCATGAATTATTTACTT-AAAGGGGGATGTATCTCTAAGGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAA-AGGCAAGTATCTCTAAGGACCCTGTTGAGC
* *
20245564 AGACAATTTCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTT-CTTTTT-TC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
**
20245627 CTTAATGCAACTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
20245692 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGGGAGCAAGAAGTTTAAGCGCAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * * * **
20245757 ATAACAAATTACAAAGAAAACATAAATGATATTTAAGAATACTTTATTCATTAAGCTGTTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* ** *
20245822 ATGCAAAGGCACTGTACATATTATATAATAGTGTTGACTAACAGACTAACTAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
20245887 AACTACTTATATATAGCACTAAGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * **
20245913 CAAATTGTAAATCGCATGAAATATTTACTTAAAAAGGCAAGTAACTCTAAGGACCCTGTTGAGTT
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
*
20245978 GACAATTGCTGCTCCCTTCTTCACC--T-TT---CT-T-C-AC-T---TTC--T--TTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20246026 TTAATGCTCCTTTTTATTCTTTTTCATTTCATATCAGATGTTAGAATTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * * *
20246091 ATTGTGTGTTTGGCGTTTTTTATTTGTAAGGGGAGGAAGAAGTCTAAGTGCAGTATTCATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
20246156 TAATAAATAAGAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
20246221 TGCAAAGGTGCTGTGCATATTATATCGGAGTGCTGACTAACAGACTAACTAAACCTTAAAGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
20246286 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
*
20246311 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTGAGGACCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
20246376 GACAATTGCTGCTCCCTTCTGCTCCCTTATTCACCTTTCTTCACCTCTTCTACGTGCCTTCTTTC
66 GACAATTGCTG-------CTG---CCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTC
* * * * * * *
20246441 CTTTTCGTCGTTAAGGCTCATTTTTATTCTTTTTCATTCCATATCAGATATTGGAGTTTTTGAAC
121 CTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAC
* * * **
20246506 CCTAGTGATAATTGTGTGTTTGGCATTTTTAT-TTTGTAATGAGAGGAAGAAGTCTAAGTTTAGT
186 CCTAGTGATAATTGTGTGTTTGGCGTTTTT-TGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGT
* * * * * *
20246570 GTTGAAGTTTATTACAAATAACAAAGAAAACATAAATGAAACTTAAAAAGTCTTTATTCATAAAG
250 GTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAG
* *
20246635 CCATTCTTTAATGCAAAGGCGCTATACATATTATATAGGAGTGTCGACTAACAGACTAACTGAAC
315 CCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAAC
20246700 CTTAACGGCTAACTACTTATATAGAGGACTATGATA
380 CTTAACGGCTAACTACTTATATAGAGGACTATGATA
* * *
20246736 CAATTTGAAAATCGCATGAATTATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTATTGTA-C
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTG-AGC
* * *
20246800 AGACAATTGTTGCTCCCTTCTTCA-CTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGAC
65 AGACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
20246864 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGTTTTTGACCCCAAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
20246929 AATTGTGTGTTTTGCATTTTTTGTTTGTAAGGAGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
20246994 ATAACAAATAACAAAGAAAAGAGAAATGATACTTAAGAAAACTTTATTGATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * *
20247059 ATGCAAAAGCGCTGTACATATTATATAGGAGTGTTGACTAACAAACTAACTGAACCTTAACGACT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
20247124 CACTACTTATATAGAGGACTATGACA
390 AACTACTTATATAGAGGACTATGATA
* * * *
20247150 CAATTTCGAAATCACATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * **
20247215 GACAATTGCTGCTCCCTTCTTCATCTTTCTTTACCTATGCTACGTTTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
20247280 TTAATGCTCGTTTTCATTCTTTTTCATTGCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
** * * *
20247345 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAATGGTGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * * * *
20247410 TAA-AATATAAAAAAGAAAACATAAATAATACTTAAAAAGACTTTATCCATTAAGCCATTCATTA
261 TAACAA-ATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
*** * * *
20247474 ATGCAAAGGTATTGTACATATTATATAAGAGTGTTGACTAACAGACTAACTGAACCTTAATGTCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
20247539 AACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
*** * * *
20247565 CAATTCAAAAATCGCATGAAATTTTTACTTAAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
20247630 GACAATTGTTG-TTCTCTTCTTCACCTTTCTTCACCTATGCTACGTACCTTCTTTCTTTTTTATC
66 GACAATTGCTGCTGC-CTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * *
20247694 CTTGATGCTCCTTTTTATTCCTTTTCATTTCATATTAGATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * *
20247759 AATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTGATGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
20247824 ATAACAAATAACAAAGAAAACATAAATGATACTTTAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
20247889 AT
325 AT
20247891 AACCAAATTA
Statistics
Matches: 12823, Mismatches: 1938, Indels: 1155
0.81 0.12 0.07
Matches are distributed among these distances:
386 3 0.00
387 334 0.03
388 3 0.00
389 1 0.00
390 1 0.00
392 1 0.00
397 9 0.00
398 326 0.03
400 3 0.00
403 3 0.00
404 366 0.03
405 264 0.02
406 4 0.00
407 11 0.00
408 428 0.03
409 113 0.01
410 11 0.00
411 24 0.00
412 307 0.02
413 1166 0.09
414 2070 0.16
415 5141 0.40
416 811 0.06
417 22 0.00
418 9 0.00
419 189 0.01
420 2 0.00
421 10 0.00
422 13 0.00
423 9 0.00
424 21 0.00
425 346 0.03
426 21 0.00
427 16 0.00
428 8 0.00
429 10 0.00
430 9 0.00
431 6 0.00
432 3 0.00
433 8 0.00
434 1 0.00
435 3 0.00
436 5 0.00
437 13 0.00
438 17 0.00
439 6 0.00
440 4 0.00
441 17 0.00
442 8 0.00
443 16 0.00
444 12 0.00
445 5 0.00
446 21 0.00
447 24 0.00
448 23 0.00
449 27 0.00
450 31 0.00
451 25 0.00
452 13 0.00
453 10 0.00
454 4 0.00
455 15 0.00
456 18 0.00
457 24 0.00
458 19 0.00
459 10 0.00
460 11 0.00
461 20 0.00
462 13 0.00
463 27 0.00
464 32 0.00
465 26 0.00
466 38 0.00
467 49 0.00
468 34 0.00
469 30 0.00
470 15 0.00
471 11 0.00
472 8 0.00
473 10 0.00
474 9 0.00
475 10 0.00
476 4 0.00
477 1 0.00
478 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (415 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGCTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
ACTACTTATATAGAGGACTATGATA
Found at i:20239259 original size:151 final size:151
Alignment explanation
Indices: 20238980--20239281 Score: 534
Period size: 151 Copynumber: 2.0 Consensus size: 151
20238970 TTGTAAGGGG
*
20238980 TGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACATAAATGACACTT
1 TGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACATAAATGACACTT
* * *
20239045 AAGAAGACTTTATCCATTAAGCCATTCTTTAATGCAAGGGTGTTGTACATATTATATAGGAGTGT
66 AAGAAGACTTTATCCATTAAGCCATTCTTTAATGCAAAGGCGTAGTACATATTATATAGGAGTGT
20239110 TGACTAACAGACTAACTGAAC
131 TGACTAACAGACTAACTGAAC
*
20239131 TGGAAGAAGTCTAAGCTTAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACATAAATGACACTT
1 TGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACATAAATGACACTT
20239196 AAGAAGACTTTATCCATTAAGCCATTCTTTAATGCAAAGGCGCTAG-ACATATTATATAGGAGTG
66 AAGAAGACTTTATCCATTAAGCCATTCTTTAATGCAAAGGCG-TAGTACATATTATATAGGAGTG
*
20239260 TTGAGTAACAGACTAACTGAAC
130 TTGACTAACAGACTAACTGAAC
20239282 CTTAACGGCT
Statistics
Matches: 144, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
151 142 0.99
152 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (151 bp):
TGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACATAAATGACACTT
AAGAAGACTTTATCCATTAAGCCATTCTTTAATGCAAAGGCGTAGTACATATTATATAGGAGTGT
TGACTAACAGACTAACTGAAC
Found at i:20251677 original size:17 final size:18
Alignment explanation
Indices: 20251615--20251680 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
20251605 CGATTATACT
* *
20251615 TGAT-AAATTATAAAGCC
1 TGATAAAATGATAATGCC
* *
20251632 TGATAAAACGATAATGTC
1 TGATAAAATGATAATGCC
*
20251650 TGATAAAATGACAATGCC
1 TGATAAAATGATAATGCC
20251668 TGAT-AAATGATAA
1 TGATAAAATGATAA
20251681 ATTATAAATG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.30
18 28 0.70
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (18 bp):
TGATAAAATGATAATGCC
Found at i:20252827 original size:51 final size:50
Alignment explanation
Indices: 20252751--20252905 Score: 196
Period size: 51 Copynumber: 3.2 Consensus size: 50
20252741 CGGATCACAT
* * *
20252751 TTATCACTTGTCATTTATCCCTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGT-ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
20252802 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTG-TACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
20252853 TTAT--C----ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTAC
1 TTATCACTTGTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
20252897 TTATCACTT
1 TTATCACTT
20252906 ATCACTGATC
Statistics
Matches: 93, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
44 40 0.43
46 1 0.01
49 1 0.01
51 50 0.54
52 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34
Consensus pattern (50 bp):
TTATCACTTGTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:20252862 original size:44 final size:44
Alignment explanation
Indices: 20252814--20252918 Score: 174
Period size: 44 Copynumber: 2.4 Consensus size: 44
20252804 ATCACTTGTT
* *
20252814 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
1 ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATC
*
20252858 ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTACTTATC
1 ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATC
*
20252902 ACTTATCACTGATCAGA
1 ACTTGTCACTGATCAGA
20252919 AGTACTCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (44 bp):
ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACCACTTATC
Found at i:20255666 original size:54 final size:54
Alignment explanation
Indices: 20255608--20255742 Score: 180
Period size: 54 Copynumber: 2.5 Consensus size: 54
20255598 CTGACTTGGT
*
20255608 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCTCTGACTTAAC
1 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
* * * **
20255662 CACACGGCCAGTCACACGTCTGTGTGTCCAGCCCGTGTAACTCACTGTCTTGGC
1 CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
* * * *
20255716 CACATGGCCTGCCACATGCCCGTGTGT
1 CACACGGCCAGTCACACGCCCGTGTGT
20255743 GAGACCGTGT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.18, C:0.37, G:0.23, T:0.22
Consensus pattern (54 bp):
CACACGGCCAGTCACACGCCCGTGTGTCCAGCCCGTGTAACTCACTGACTTAAC
Found at i:20256852 original size:42 final size:43
Alignment explanation
Indices: 20256772--20256896 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
20256762 CTTACGTGTT
* * *
20256772 ATCATATATCGATGCCACTATCCAAGACAAGGTCTTACACGAA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* * *
20256815 ATCATATAT-GATTCCAATGTCCTAGACATGGTCTTACACGTA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* *
20256857 ATC-TCTAATCGATGCCAATGTCCCAGACATGGTCTTACAC
1 ATCATAT-ATCGATGCCAATGTCCAAGACATGGTCTTACAC
20256897 AATATCACAC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
41 2 0.03
42 32 0.45
43 37 0.52
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
Found at i:20258899 original size:11 final size:11
Alignment explanation
Indices: 20258858--20258901 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
20258848 TTACTAAATA
20258858 TTGTGCAATTT
1 TTGTGCAATTT
*
20258869 TTTTGCAATTT
1 TTGTGCAATTT
* *
20258880 TAGT-AAATTT
1 TTGTGCAATTT
20258890 TTGTGCAATTT
1 TTGTGCAATTT
20258901 T
1 T
20258902 AATGCATTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.57
Consensus pattern (11 bp):
TTGTGCAATTT
Found at i:20258910 original size:21 final size:21
Alignment explanation
Indices: 20258864--20258904 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
20258854 AATATTGTGC
* *
20258864 AATTTTTTTGCAATTTTAGTA
1 AATTTTTGTGCAATTTTAATA
20258885 AATTTTTGTGCAATTTTAAT
1 AATTTTTGTGCAATTTTAAT
20258905 GCATTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (21 bp):
AATTTTTGTGCAATTTTAATA
Found at i:20261014 original size:45 final size:45
Alignment explanation
Indices: 20260950--20261039 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
20260940 ATTTTTTGGC
20260950 GGACTTTAAGTTTGGGGGAGTGGCTCCGTCTAGAACATGTCTAGT
1 GGACTTTAAGTTTGGGGGAGTGGCTCCGTCTAGAACATGTCTAGT
20260995 GGACTTTAAGTTTGGGGGAGTGGCTCCGTCTAGAACATGTCTAGT
1 GGACTTTAAGTTTGGGGGAGTGGCTCCGTCTAGAACATGTCTAGT
20261040 TGGGCTACTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.31
Consensus pattern (45 bp):
GGACTTTAAGTTTGGGGGAGTGGCTCCGTCTAGAACATGTCTAGT
Found at i:20263122 original size:107 final size:109
Alignment explanation
Indices: 20263005--20263239 Score: 266
Period size: 107 Copynumber: 2.2 Consensus size: 109
20262995 CGGCATCAAA
*** * *
20263005 ATACGAAAAAAGTAAAAAAAAAAAT-TGGTAGTGGTCTACCAATTGCCGGCACCATC-TTTATTA
1 ATACGAAAAAAGTAAAAAAAAAAATGTGGTAGTCACCTACCAATGGCCGGCACCA-CGTTTATGA
*
20263068 GATAAA-AAAATTTTACTTTTTTCGTGTCAATGGCAA-ACACCAGT
65 GAGAAATAAAATTTTACTTTTTTCGTGTCAATGG-AAGACACCAGT
* * *
20263112 ATACGAAAAAAGT--AAAAAAAAATGTGGTGGTCACCTGCCAATGGCCGGCACCACGTTTATGGG
1 ATACGAAAAAAGTAAAAAAAAAAATGTGGTAGTCACCTACCAATGGCCGGCACCACGTTTATGAG
**** * *
20263175 AGAAATTTTTTTTTACTTTTTTTGTGTCAATGGAAGGCACCAGT
66 AGAAATAAAATTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
*
20263219 ATAAGAAAAAAGTAAAAAAAA
1 ATACGAAAAAAGTAAAAAAAA
20263240 TTCATATACT
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
105 11 0.10
106 35 0.33
107 54 0.51
109 6 0.06
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (109 bp):
ATACGAAAAAAGTAAAAAAAAAAATGTGGTAGTCACCTACCAATGGCCGGCACCACGTTTATGAG
AGAAATAAAATTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
Found at i:20263672 original size:109 final size:111
Alignment explanation
Indices: 20263453--20263654 Score: 277
Period size: 109 Copynumber: 1.8 Consensus size: 111
20263443 AAAAAATTTA
* ***
20263453 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAGTAAAAAAAAATATCTTTTAAAGG
1 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
20263518 TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAATTTTTTTT
66 TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAATTTTTTTT
* * * *
20263564 ACTTTTTTTGTATACTGGTGCGTGTCATTGACA-TAAAAAAATAAAAAAAAAT-TCCAATAAAGG
1 ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
*
20263627 TGGTG-TCGGTCATTGGCAA-GCCACCACC
66 TGGTGCT-GGCCATTGG-AAGGCCACCACC
20263655 GAAATTTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
108 1 0.01
109 30 0.38
110 19 0.24
111 30 0.38
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (111 bp):
ACTTTTTTCGTATACTGGTGCCTGCCATTGACACGAAAAAAATAAAAAAAAATATCCAATAAAGG
TGGTGCTGGCCATTGGAAGGCCACCACCAAAAAAAAAATTTTTTTT
Found at i:20264471 original size:104 final size:102
Alignment explanation
Indices: 20264298--20264575 Score: 328
Period size: 104 Copynumber: 2.6 Consensus size: 102
20264288 TTTTTATACG
* * * *
20264298 AAAAAAAAATTTCGGGTGTTAGTCTGTCAATGGCCGGCACCCCCTTTCTACAATAAATTTTTTTT
1 AAAAAAAAATTT-GGG-G-TGGCCTGGCAATGGCCGGCACCCCCTTTATAC----AATTTTTTTT
* * * *
20264363 TACTTTTGGTGTGTCAATGGCCAGCACCA-GTATATGAAAAAAGT
59 TACTTTTGGTCTGTCAATAGCCAACA-CATGTATACGAAAAAAGT
*
20264407 AAAAAAAAAACTTTTTGGGGTGGCCTGGCAATGGCCGGCACCCCTTTTATAC-A-TTTTTTTTAC
1 -AAAAAAAAA---TTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTAC
*
20264470 TTTTGGTCTGTCAATAGCGAACACATGTATACGAAAAAAGT
62 TTTTGGTCTGTCAATAGCCAACACATGTATACGAAAAAAGT
*
20264511 AAAAAAAAATTTGGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
1 AAAAAAAAATTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
20264576 TTCGTATACT
Statistics
Matches: 150, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
100 37 0.25
101 1 0.01
102 14 0.09
103 11 0.07
104 43 0.29
105 1 0.01
110 36 0.24
111 1 0.01
112 3 0.02
113 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (102 bp):
AAAAAAAAATTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTTTACTTTT
GGTCTGTCAATAGCCAACACATGTATACGAAAAAAGT
Found at i:20264565 original size:100 final size:102
Alignment explanation
Indices: 20264298--20264567 Score: 303
Period size: 100 Copynumber: 2.6 Consensus size: 102
20264288 TTTTTATACG
* * * * *
20264298 AAAAAAAAATTTCGGGTGTTAGTCTGTCAATGGCCGGCACCCCCTTTCTACAATAAATTTTTTTT
1 AAAAAAAAATTTTGGG-G-TGGCCTGGCAATGGCCGGCACCCCCTTTATAC----AA--TTTTTT
* * * *
20264363 TACTTTTGGTGTGTCAATGGCCAGCACCAGTATATGAAAAAAGTA
58 TACTTTTGGTCTGTCAATAGCCAACACCAGTATACGAAAAAAGTA
* *
20264408 AAAAAAAAACTTTTTGGGGTGGCCTGGCAATGGCCGGCACCCCTTTTATACATTTTTTTTACTTT
1 AAAAAAAAA--TTTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTACTTT
*
20264473 TGGTCTGTCAATAGCGAACA-CATGTATACGAAAAAAGT-
64 TGGTCTGTCAATAGCCAACACCA-GTATACGAAAAAAGTA
*
20264511 AAAAAAAAA-TTTGGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACAATTTTTTT
1 AAAAAAAAATTTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTT
20264568 TTACTTTTTT
Statistics
Matches: 142, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
100 45 0.32
103 11 0.08
104 42 0.30
106 1 0.01
110 36 0.25
111 1 0.01
112 6 0.04
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (102 bp):
AAAAAAAAATTTTGGGGTGGCCTGGCAATGGCCGGCACCCCCTTTATACAATTTTTTTACTTTTG
GTCTGTCAATAGCCAACACCAGTATACGAAAAAAGTA
Found at i:20267986 original size:21 final size:22
Alignment explanation
Indices: 20267962--20268008 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
20267952 TTTGAAAGAC
20267962 AAATATGCAAATATATATATA-
1 AAATATGCAAATATATATATAT
* **
20267983 AAATGTTTAAATATATATATAT
1 AAATATGCAAATATATATATAT
20268005 AAAT
1 AAAT
20268009 GTATATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATATGCAAATATATATATAT
Found at i:20269834 original size:16 final size:15
Alignment explanation
Indices: 20269811--20269853 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
20269801 TAATAATTAC
20269811 ATTATTTAAAAATAA
1 ATTATTTAAAAATAA
*
20269826 ATATATTTATTAAATAA
1 AT-TATTTA-AAAATAA
*
20269843 ATTATGTAAAA
1 ATTATTTAAAA
20269854 TGATAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 4 0.17
16 11 0.48
17 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATTATTTAAAAATAA
Found at i:20272806 original size:740 final size:740
Alignment explanation
Indices: 20271387--20272867 Score: 2937
Period size: 740 Copynumber: 2.0 Consensus size: 740
20271377 ACAATTAAGA
20271387 CCTTCACCTTATTTTAATTCCCAATTCCTCCCCCAAAATTTTGTTTCGCTTTCAATTTCAGTCCT
1 CCTTCACCTTATTTTAATTCCCAATTCCTCCCCCAAAATTTTGTTTCGCTTTCAATTTCAGTCCT
20271452 TATTTTATTTTTATTTTTTTAAAATACTTTTGCATTTTTATATTTTATATTTTTATTATTTAAAT
66 TATTTTATTTTTATTTTTTTAAAATACTTTTGCATTTTTATATTTTATATTTTTATTATTTAAAT
20271517 TTCTACTTTTAAGTTCAATTAATCTATTTTATTTCAACCTTTCCACAAACTTTTTATTTTATTTA
131 TTCTACTTTTAAGTTCAATTAATCTATTTTATTTCAACCTTTCCACAAACTTTTTATTTTATTTA
20271582 TTTATTTATTATTTCTTCTTCCCTTCACATTAAAAAAATAGATTATTCGTACTCTTTTTTTAATT
196 TTTATTTATTATTTCTTCTTCCCTTCACATTAAAAAAATAGATTATTCGTACTCTTTTTTTAATT
20271647 GTGCGTTTTTATTATTGTTGTTATTATTTTAATTCTAATGTTTTTGTTGTTCTTGTTGTTTTATT
261 GTGCGTTTTTATTATTGTTGTTATTATTTTAATTCTAATGTTTTTGTTGTTCTTGTTGTTTTATT
20271712 ATTTCTAATATCTTCATGTTATGTTTATTTATCTTTTTTAAATTGTGCATTTTCCATTTCCATTT
326 ATTTCTAATATCTTCATGTTATGTTTATTTATCTTTTTTAAATTGTGCATTTTCCATTTCCATTT
20271777 TAATTTTAAGTTACTTTATTTATTTTATTATTGCAATCTGATTATTAATATTATTACCATTTTTA
391 TAATTTTAAGTTACTTTATTTATTTTATTATTGCAATCTGATTATTAATATTATTACCATTTTTA
20271842 TAATCAATTCATGTCACATTAATTTTCTAATACAGAAATTAAATAATATAATAAAAAATTCGAGA
456 TAATCAATTCATGTCACATTAATTTTCTAATACAGAAATTAAATAATATAATAAAAAATTCGAGA
20271907 TTCATAAATAATAACAAATTTGGAAGAAACAGATTTGGTGGATTCATAAATCTCATTATTGATTT
521 TTCATAAATAATAACAAATTTGGAAGAAACAGATTTGGTGGATTCATAAATCTCATTATTGATTT
*
20271972 TTTAATTTTAAAAATATATTATTTATACAATATTAAAGAAGGGTTGAAGAATAATAAAATTTAAA
586 ATTAATTTTAAAAATATATTATTTATACAATATTAAAGAAGGGTTGAAGAATAATAAAATTTAAA
20272037 TCCGCGTTATTATATAAAATCTATAATTTTAATTTTGATAATAATCAAATAGATACATCTTAATC
651 TCCGCGTTATTATATAAAATCTATAATTTTAATTTTGATAATAATCAAATAGATACATCTTAATC
20272102 CTTAAA-TAAATAATTATTAGACTAC
716 C-TAAAGTAAATAATTATTAGACTAC
20272127 CCTTCACCTTATTTTAATTCCCAATTCCTCCCCCAAAATTTTGTTTCGCTTTCAATTTCAGTCCT
1 CCTTCACCTTATTTTAATTCCCAATTCCTCCCCCAAAATTTTGTTTCGCTTTCAATTTCAGTCCT
20272192 TATTTTATTTTTATTTTTTTAAAATACTTTTGCATTTTTATATTTTATATTTTTATTATTTAAAT
66 TATTTTATTTTTATTTTTTTAAAATACTTTTGCATTTTTATATTTTATATTTTTATTATTTAAAT
20272257 TTCTACTTTTAAGTTCAATTAATCTATTTTATTTCAACCTTTCCACAAACTTTTTATTTTATTTA
131 TTCTACTTTTAAGTTCAATTAATCTATTTTATTTCAACCTTTCCACAAACTTTTTATTTTATTTA
20272322 TTTATTTATTATTTCTTCTTCCCTTCACATTAAAAAAATAGATTATTCGTACTCTTTTTTTAATT
196 TTTATTTATTATTTCTTCTTCCCTTCACATTAAAAAAATAGATTATTCGTACTCTTTTTTTAATT
20272387 GTGCGTTTTTATTATTGTTGTTATTATTTTAATTCTAATGTTTTTGTTGTTCTTGTTGTTTTATT
261 GTGCGTTTTTATTATTGTTGTTATTATTTTAATTCTAATGTTTTTGTTGTTCTTGTTGTTTTATT
20272452 ATTTCTAATATCTTCATGTTATGTTTATTTATCTTTTTTAAATTGTGCATTTTCCATTTCCATTT
326 ATTTCTAATATCTTCATGTTATGTTTATTTATCTTTTTTAAATTGTGCATTTTCCATTTCCATTT
20272517 TAATTTTAAGTTACTTTATTTATTTTATTATTGCAATCTGATTATTAATATTATTACCATTTTTA
391 TAATTTTAAGTTACTTTATTTATTTTATTATTGCAATCTGATTATTAATATTATTACCATTTTTA
20272582 TAATCAATTCATGTCACATTAATTTTCTAATACAGAAATTAAATAATATAATAAAAAATTCGAGA
456 TAATCAATTCATGTCACATTAATTTTCTAATACAGAAATTAAATAATATAATAAAAAATTCGAGA
20272647 TTCATAAATAATAACAAATTTGGAAGAAACAGATTTGGTGGATTCATAAATCTCATTATTGATTT
521 TTCATAAATAATAACAAATTTGGAAGAAACAGATTTGGTGGATTCATAAATCTCATTATTGATTT
20272712 ATTAATTTTAAAAATATATTATTTATACAATATTAAAGAAGGGTTGAAGAATAATAAAATTTAAA
586 ATTAATTTTAAAAATATATTATTTATACAATATTAAAGAAGGGTTGAAGAATAATAAAATTTAAA
20272777 TCCGCGTTATTATATAAAATCTATAATTTTAATTTTGATAATAATCAAATAGATACATCTTAATC
651 TCCGCGTTATTATATAAAATCTATAATTTTAATTTTGATAATAATCAAATAGATACATCTTAATC
20272842 CTAAAGTAAATAATTATTAGACTAC
716 CTAAAGTAAATAATTATTAGACTAC
20272867 C
1 C
20272868 ATAAAAAATT
Statistics
Matches: 739, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
739 4 0.01
740 735 0.99
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (740 bp):
CCTTCACCTTATTTTAATTCCCAATTCCTCCCCCAAAATTTTGTTTCGCTTTCAATTTCAGTCCT
TATTTTATTTTTATTTTTTTAAAATACTTTTGCATTTTTATATTTTATATTTTTATTATTTAAAT
TTCTACTTTTAAGTTCAATTAATCTATTTTATTTCAACCTTTCCACAAACTTTTTATTTTATTTA
TTTATTTATTATTTCTTCTTCCCTTCACATTAAAAAAATAGATTATTCGTACTCTTTTTTTAATT
GTGCGTTTTTATTATTGTTGTTATTATTTTAATTCTAATGTTTTTGTTGTTCTTGTTGTTTTATT
ATTTCTAATATCTTCATGTTATGTTTATTTATCTTTTTTAAATTGTGCATTTTCCATTTCCATTT
TAATTTTAAGTTACTTTATTTATTTTATTATTGCAATCTGATTATTAATATTATTACCATTTTTA
TAATCAATTCATGTCACATTAATTTTCTAATACAGAAATTAAATAATATAATAAAAAATTCGAGA
TTCATAAATAATAACAAATTTGGAAGAAACAGATTTGGTGGATTCATAAATCTCATTATTGATTT
ATTAATTTTAAAAATATATTATTTATACAATATTAAAGAAGGGTTGAAGAATAATAAAATTTAAA
TCCGCGTTATTATATAAAATCTATAATTTTAATTTTGATAATAATCAAATAGATACATCTTAATC
CTAAAGTAAATAATTATTAGACTAC
Found at i:20272948 original size:23 final size:23
Alignment explanation
Indices: 20272903--20272957 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
20272893 GCATGTCAAA
*
20272903 ATTTAGTACTTTAATAAATAATA-
1 ATTTATTA-TTTAATAAATAATAT
20272926 ATTATATTATTTAA-AAATAAATAT
1 ATT-TATTATTTAATAAAT-AATAT
20272950 ATTTATTA
1 ATTTATTA
20272958 AAGAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
24 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTATTATTTAATAAATAATAT
Found at i:20272958 original size:19 final size:20
Alignment explanation
Indices: 20272912--20272959 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
20272902 AATTTAGTAC
* *
20272912 TTTAATAAATAATAATTATA
1 TTTATTAAATAATAAATATA
20272932 -TTATTTAAA-AATAAATATA
1 TTTA-TTAAATAATAAATATA
20272951 TTTATTAAA
1 TTTATTAAA
20272960 GAAATTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATTAAATAATAAATATA
Found at i:20277544 original size:22 final size:22
Alignment explanation
Indices: 20277518--20277566 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
20277508 TTAAATGATT
*
20277518 ATAAACAAATA-ACTAATAATAA
1 ATAAACAAATATACCAA-AATAA
* *
20277540 ATAAATAACTATACCAAAATAA
1 ATAAACAAATATACCAAAATAA
20277562 ATAAA
1 ATAAA
20277567 TATGGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.22
Consensus pattern (22 bp):
ATAAACAAATATACCAAAATAA
Found at i:20278508 original size:22 final size:23
Alignment explanation
Indices: 20278483--20278531 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
20278473 GAATGTATAT
*
20278483 AAAAGAAAA-AATAAAAATATTG
1 AAAAGAAAATAACAAAAATATTG
* *
20278505 AAAAGAAAATCACATAAATATTG
1 AAAAGAAAATAACAAAAATATTG
20278528 AAAA
1 AAAA
20278532 CAGAAAAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.18
Consensus pattern (23 bp):
AAAAGAAAATAACAAAAATATTG
Found at i:20279479 original size:41 final size:40
Alignment explanation
Indices: 20279375--20279489 Score: 113
Period size: 40 Copynumber: 2.9 Consensus size: 40
20279365 TAATAGCTTC
* * *
20279375 AATCTGCTCCACTGTAACTTCAAGGAGATAAGATTGGCTT
1 AATCTGCTCCACTGAAACTTCAGGGAGATAAGATTGGATT
* * * *
20279415 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATAT
1 AATCTGCTCCACTGAAACTTCAGGGAGATAAGATTGGAT-T
* * * * *
20279456 GATCTGCTCTACTGCAACTTCAGGAAGATGAGAT
1 AATCTGCTCCACTGAAACTTCAGGGAGATAAGAT
20279490 CTGTTATGAT
Statistics
Matches: 59, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
40 32 0.54
41 27 0.46
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
AATCTGCTCCACTGAAACTTCAGGGAGATAAGATTGGATT
Found at i:20279627 original size:44 final size:42
Alignment explanation
Indices: 20279549--20279662 Score: 111
Period size: 44 Copynumber: 2.6 Consensus size: 42
20279539 TTTGCTATCT
** * * *
20279549 TTAATCTGTTCCACTATAACTTCAAGGAGATAGGATCCATCATC
1 TTAATCTGTTCCACTGCAATTTC-AGGAGATAGGATCAAT-AAC
* *
20279593 TTAATCTGTTCCACTGCAATTTCAGGCAGGTAGGATTAATAAC
1 TTAATCTGTTCCACTGCAATTTCAGG-AGATAGGATCAATAAC
* *
20279636 TTCAATATGCTCCACTGCAATTTCAGG
1 TT-AATCTGTTCCACTGCAATTTCAGG
20279663 GGGATAAGAC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 7 0.12
44 52 0.88
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (42 bp):
TTAATCTGTTCCACTGCAATTTCAGGAGATAGGATCAATAAC
Found at i:20279728 original size:44 final size:44
Alignment explanation
Indices: 20279647--20279748 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
20279637 TCAATATGCT
* * *
20279647 CCACTGCAATTTCAGGGGGATAAGACTTGTATCTTCAACTTGCC
1 CCACTGCAACTTCAGGGGGATAAGACTTCTATCTTCAACCTGCC
* ** *
20279691 CCACTGCAACTTCATGGGGATAAGGTTTTCTAT-TTCAACCTGCT
1 CCACTGCAACTTCAGGGGGATAA-GACTTCTATCTTCAACCTGCC
* *
20279735 CTACTACAACTTCA
1 CCACTGCAACTTCA
20279749 AAGAGATAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
44 42 0.88
45 6 0.12
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGGGATAAGACTTCTATCTTCAACCTGCC
Found at i:20279803 original size:312 final size:312
Alignment explanation
Indices: 20279415--20280952 Score: 2481
Period size: 312 Copynumber: 4.9 Consensus size: 312
20279405 AGATTGGCTT
* * * * *
20279415 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAG-
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * * *
20279479 GAAGATGAGATCTGTTATGATAGATTTAATCTATTCTACTGCAAGTTCAGGGAAATACGATTTGC
66 G-AGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGC
* ** *
20279544 TATCTTTAATCTGTTCCACTATAACTTCAAGGAGATAGGATCCATCATCTTAATCTGTTCCACTG
130 TATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTG
* * * * *
20279609 CAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGGATAAGACT
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACT
*
20279674 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTTCTATTTC
260 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
** * *
20279727 AACCTGCTCTACTACAACTTCAAAGAGATAAAGTTTGATATGATATGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
20279792 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
** *
20279857 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCCATTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
*
20279922 AACTTTAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
**
20279987 GTATCTTCAACTTGCCCCACTGCAACTTCATATGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
20280039 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
20280104 GAGATGAGATCTGTTATGGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
20280169 ATCTTTAATCTGCTCCACTGAAACTTTAGGGAGATATGATCCATCATCTTAATCTGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
*
20280234 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAAACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
20280299 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* *
20280351 AACCTGCTCTACTGTAACTTTAGAGAGATAAAGTTTGATATGATCTGTTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
20280416 GAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
20280481 ATCTTTAATTTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
* * * * * *
20280545 CAACTTCAAGGATGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACT
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACT
20280610 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
260 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
*
20280663 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
20280728 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* *
20280793 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATTTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
*
20280857 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTT-AGGGAGATAAGAC
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAA-TTTCAGGGAGATAAGAC
* *
20280921 TTGTGTCTTCAACTTGCCCTACTGCAACTTCA
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCA
20280953 GAGAGATAAA
Statistics
Matches: 1140, Mismatches: 83, Indels: 6
0.93 0.07 0.00
Matches are distributed among these distances:
311 1 0.00
312 1136 1.00
313 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (312 bp):
AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
Found at i:20280856 original size:268 final size:267
Alignment explanation
Indices: 20280580--20281270 Score: 989
Period size: 268 Copynumber: 2.6 Consensus size: 267
20280570 ACTTCAATCT
* ** * * *
20280580 GCTCCACTGCAACTTCAGGAAAATAAGACTT-GTATCTTCAACT-TGCCCCACTGCAACTTCATG
1 GCTCCACTGCAACTTCAGGGAGGTAGGA-TTAGTAACTTCAA-TATGCTCCACTGCAACTTCA-G
** * *
20280643 GGGATAAGGTTTGCTAT-TTCAACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGAC
63 GGGATAAGACTTG-TATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGAC
*
20280707 CTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAAC
127 CTGCTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAAC
*
20280772 TTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCAT
192 TTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCAT
20280837 CATTTTAATTC
257 CATTTTAATTC
*
20280848 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTTAGGGA
1 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAGGG-
* * * *
20280913 GATAAGACTTGTGTCTTCAACTTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTA
65 GATAAGACTTGTATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTG
*
20280978 CTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTT
130 CTCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTC
* *
20281043 AGGGAAATACGATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGATCCATCAT
195 AGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCATCAT
*
20281108 TTTAATTT
260 TTTAATTC
* *
20281116 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGA
1 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAG-GG
* *
20281181 GATAAGACTTGTATCTTCAACTTGCGCC-ACTGTAACTTCATG-G-GTATAAGGTTTTCTATATC
65 GATAAGACTTGTATCTTCAACTTGC-CCTACTGTAACTTCA-GAGAG-ATAAAG-TTT-GATAT-
* *
20281243 AACTTGCTCTACTGCAACTTCAGAGAGA
124 GACCTGCTCTACTGCAACTTCAGAGAGA
20281271 TAAAGTTTGA
Statistics
Matches: 380, Mismatches: 32, Indels: 19
0.88 0.07 0.04
Matches are distributed among these distances:
267 9 0.02
268 336 0.88
269 7 0.02
270 4 0.01
271 24 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (267 bp):
GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTCAGGGG
ATAAGACTTGTATCTTCAACTTGCCCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGC
TCTACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTCA
GGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAGGGAGATAGGATCCATCATT
TTAATTC
Found at i:20280905 original size:580 final size:580
Alignment explanation
Indices: 20280217--20281345 Score: 1741
Period size: 580 Copynumber: 1.9 Consensus size: 580
20280207 ATCCATCATC
* * * *
20280217 TTAATCTGTTCCACTACAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATT
1 TTAATCTGCTCCACTACAACTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTGCAACT
* **
20280282 TCAGGGAGATAAAACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGG-GATAAGGTTTGCT
66 TCAGGGAGATAAAACTTGTAACTTCAACTTGCCCCACTGCAACTTCA-GGGAGATAAGACTTG-T
* * * **
20280346 AT-TTCAACCTGCTCTACTGTAACTTTAGAGAGATAAAGTTTGATATGATCTGTTCTACTGCAAC
129 ATCTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCAAC
20280410 TTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGA
194 TTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGA
* *
20280475 TTTGCTATCTTTAATTTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAATTCGCTC
259 TTTGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGCTC
*
20280540 CACTGCAACTTCAAGGATGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAG-GAAAAT
324 CACTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAG-AAAT
*
20280604 AAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTCAACCTG
388 AAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCTG
* *
20280669 CTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGAGAGACG
453 CTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGACG
20280734 AGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
518 AGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
* * * *
20280797 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCA-TCATTTTAAT-TCGCTCCACTGCAA
1 TTAATCTGCTCCACTACAACTTCAGGGAGATAGGAT-CAGTAACTTCAATCT-GCTCCACTGCAA
* ** * *
20280860 CTTCAGGGAGGTAGGA-TTAGTAACTTCAA-TATGCTCCACTGCAACTTTAGGGAGATAAGACTT
64 CTTCAGGGAGATAAAACTT-GTAACTTCAACT-TGCCCCACTGCAACTTCAGGGAGATAAGACTT
* *
20280923 GTGTCTTCAACTTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCA
127 GTATCTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCA
* *
20280988 ACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTTAGGGAAATAC
192 ACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATAC
* * * *
20281053 GATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGATCCATCATTTTAATTTGC
257 GATTTGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGC
* * *
20281118 TCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAGA
322 TCCACTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAAA
* * * * *
20281183 TAAGACTTGTATCTTCAACTTGCGCCACTGTAACTTCATGGGTATAAGGTTTTCTATATCAACTT
387 TAAGACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCT
*
20281248 GCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATATGCTCTACTGCAACTTCAGAGAGAC
452 GCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGAC
*
20281313 GAGATTTGTTATGGTAGATTTAATCTGTTCCAC
517 GAGATCTGTTATGGTAGATTTAATCTGTTCCAC
20281346 CTGTAATAGC
Statistics
Matches: 497, Mismatches: 45, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
579 9 0.02
580 486 0.98
581 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (580 bp):
TTAATCTGCTCCACTACAACTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTGCAACT
TCAGGGAGATAAAACTTGTAACTTCAACTTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAT
CTTCAACCTGCCCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCAACTT
CAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATT
TGCTATCTTTAATCTGCTCCACTGCAAATTCAAGGAGATAGGATCCATCATGTTAATTCGCTCCA
CTGCAACTTCAAGGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAAATAAG
ACTTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATATCAACCTGCTC
TACTGCAACTTCAGAGAGATAAAGTTTGATATGACATGCTCTACTGCAACTTCAGAGAGACGAGA
TCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCTATCT
Found at i:20281166 original size:624 final size:620
Alignment explanation
Indices: 20279415--20281220 Score: 2373
Period size: 624 Copynumber: 2.9 Consensus size: 620
20279405 AGATTGGCTT
* * * * *
20279415 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAG-
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
20279479 GAAGATGAGATCTGTTATGATAGATTTAATCTATTCTACTGCAAGTTCAGGGAAATACGATTTGC
66 G-AGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGC
* *
20279544 TATCTTTAATCTGTTCCACT-ATAACTTCAAGGAGATAGGATCCATCATCTTAATCTGTTCCACT
130 TATCTTTAATCTGCTCCACTGA-AACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACT
* * * *
20279608 GCAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGGATAAGAC
194 GCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGAC
*
20279673 TTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTTCTATTTCAACCTGCTCTA
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGG-TTT-GATTTCAACCTGCTCTA
* * *
20279738 CTACAACTTCAAAGAGATAAAGTTTGATATGA-TATGC--TCTACTGCAACTTCAGAGAGACGAG
322 CTGCAACTTCAGAGAGAGAAAGTTTG-TA-GATTAT-CTTTCTACTGCAACTTCAGAGAGAC-AG
*
20279800 ATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA
383 ATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA
* * *** * * *
20279865 TCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCCATTCCACTACAACTTTAG
448 TTTGCTCCACTGCAACTTCAGGGAGATAGGATCCAT-AACTTAATCTGCTCCACTGCAACTTCAA
* * * *
20279930 GGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTTGTATCTTC
512 GGAGGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTC
*
20279995 AACTTGCCCCACTGCAACTTCATATGGATAAGGTTTGCTATTTC
577 AACTTGCCCCACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
20280039 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
*
20280104 GAGATGAGATCTGTTATGGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * *
20280169 ATCTTTAATCTGCTCCACTGAAACTTTAGGGAGATATGATCCATCATCTTAATCTGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
* *
20280234 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAAACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGACTT
20280299 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTCAACCTGCTCTACT
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTG--ATTTCAACCTGCTCTACT
* * * * *
20280364 GTAACTTTAGAGAGATAAAGTTTG-ATATGATCTGTTCTACTGCAACTTCAGAGAGACGAGATCT
324 GCAACTTCAGAGAGAGAAAGTTTGTAGATTATCT-TTCTACTGCAACTTCAGAGAGAC-AGATCT
* *
20280428 GTTATGGTAGATTTAATCTATTCCACTACAACTTCAGGGAAATACGATTTGCTATCTTTAATTTG
387 GTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATTTG
* **
20280493 CTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAAT-TCGCTCCACTGCAACTTCAAGGA
452 CTCCACTGCAACTTCAGGGAGATAGGATCCAT-AACTTAATCT-GCTCCACTGCAACTTCAAGGA
*
20280557 TGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAAC
515 GGTAAGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAAC
*
20280622 TTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
580 TTGCCCCACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
*
20280663 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGACCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
20280728 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATACGATTTGCT
66 GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
* * *
20280793 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATTTTAAT-TCGCTCCACTG
131 ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCT-GTTCCACTG
20280857 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTT-AGGGAGATAAGAC
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAA-TTTCAGGGAGATAAGAC
* * * * * * * *
20280921 TTGTGTCTTCAACTTGCCCTACTGCAACTTCA-GAGAGATAAAGTTTGATAT-GATCTACTCTAC
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCATG-GGGATAAGGTTTGATTTCAACCTGCTCTAC
* * *
20280984 TGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTATTCCACTGCAACTTTAG-G-G
323 TGCAACTTCAGAGAGA-GA-A--AGTT-T-GTAGA-TT-ATCT-TTCTACTGCAACTTCAGAGAG
* ** * * * * * *
20281047 A-A-ATAC-GATT-TGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGAGATAGGA--T-CCAT
379 ACAGAT-CTG-TTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTAT
* *
20281105 CATTTTAATTTGCTCCACTGCAACTTCAGGGAGGTAGGAT-TAGTAACTTCAATCTGCTCCACTG
442 C--TTTAATTTGCTCCACTGCAACTTCAGGGAGATAGGATCCA-TAACTT-AATCTGCTCCACTG
* * * *
20281169 CAACTTC-AGAGAGATAAGACTT-GTATCTTCAA-CTTGCGCCACTGTAACTTCA
503 CAACTTCAAG-GAGGTAAGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA
20281221 TGGGTATAAG
Statistics
Matches: 1054, Mismatches: 97, Indels: 62
0.87 0.08 0.05
Matches are distributed among these distances:
621 25 0.02
622 11 0.01
623 14 0.01
624 926 0.88
625 47 0.04
626 5 0.00
627 1 0.00
628 4 0.00
629 2 0.00
630 19 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (620 bp):
AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
ATCTTTAATCTGCTCCACTGAAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTGC
AACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGACTT
GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGATTTCAACCTGCTCTACTGC
AACTTCAGAGAGAGAAAGTTTGTAGATTATCTTTCTACTGCAACTTCAGAGAGACAGATCTGTTA
TGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATTTGCTCC
ACTGCAACTTCAGGGAGATAGGATCCATAACTTAATCTGCTCCACTGCAACTTCAAGGAGGTAAG
ATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGAAAATAAGACTTGTATCTTCAACTTGCCC
CACTGCAACTTCATAGGGATAAGGTTTGCTATTTC
Found at i:20281211 original size:44 final size:43
Alignment explanation
Indices: 20279828--20281273 Score: 330
Period size: 44 Copynumber: 32.5 Consensus size: 43
20279818 AATCTGTTCT
* * * *
20279828 ACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTG-TATCTTCAACT-TGCTCC
* * ** *
20279873 ACTGCAACTTCAGGGAGATAGGATCCATCATCTT-AA--TCCATTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TGT-ATCTTCAACTTGC--TCC
* * * * * *
20279917 ACTACAACTTTAGGGAGGTAGGATTAGTAACTTCAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATT-GTATCTTCAACT-TGCTCC
* * *
20279961 ACTGCAATTTCAGGGAGATAAGACTTGTATCTTCAACTTGCCCC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTATCTTCAACTTGCTCC
* * * *
20280005 ACTGCAACTTCATATG-GATAAGGTTTGCTAT-TTCAACCTGCTCT
1 ACTGCAACTTCAGA-GAGATAA-GATTG-TATCTTCAACTTGCTCC
* * * * * *
20280049 ACTGTAACTTCAGAGAGATAAAGTTTG-AT-ATGATC-TGCTCT
1 ACTGCAACTTCAGAGAGAT-AAGATTGTATCTTCAACTTGCTCC
* * ** * *
20280090 ACTGCAACTTCAGAGAGATGAGATCTGTTATGGTAGATTTACTCTGTTCT
1 ACTGCAACTTCAGAGAGATAAGAT-TG-TAT-CT---TCAACT-TGCTCC
* * * *
20280140 ACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTG-TATCTTCAACT-TGCTCC
* * * * ** *
20280185 ACTGAAACTTTAGGGAGATATGATCCATCATCTT-AA-TCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TGT-ATCTTCAACT-TGCTCC
* * * * *
20280229 ACTACAACTTCAGGGAGGTAGGATTAGTAACTTCAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATT-GTATCTTCAACT-TGCTCC
* * * *
20280273 ACTGCAATTTCAGGGAGATAAAACTTGTATCTTCAACTTGCCCC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTATCTTCAACTTGCTCC
* * * *
20280317 ACTGCAACTTCATG-GGGATAAGGTTTGCTAT-TTCAACCTGCTCT
1 ACTGCAACTTCA-GAGAGATAA-GATTG-TATCTTCAACTTGCTCC
* * * * * * * *
20280361 ACTGTAACTTTAGAGAGATAAAGTTTG-AT-ATGATC-TGTTCT
1 ACTGCAACTTCAGAGAGAT-AAGATTGTATCTTCAACTTGCTCC
** * *
20280402 ACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTAT--TCC
1 ACTGCAACTTCAGAGAGATAAGAT-TG-TA---T--CTTCAA-CT-TGCTCC
* * * * * *
20280452 ACTACAACTTCAGGGAAATACGATTTGCTATCTTTAATTTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTG-TATCTTCAACTTGCTCC
* ** *
20280497 ACTGCAACTTCA-AGGAGATAGGA-TCCATCATGTTAA-TTCGCTCC
1 ACTGCAACTTCAGA-GAGATAAGATTGTATC-T-TCAACTT-GCTCC
*
20280541 ACTGCAACTTCA-AG-GATGTAAGATTAGTAACTTCAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGA--TAAGATT-GTATCTTCAACT-TGCTCC
* *
20280585 ACTGCAACTTCAG-GAAAATAAGACTTGTATCTTCAACTTGCCCC
1 ACTGCAACTTCAGAG-AGATAAGA-TTGTATCTTCAACTTGCTCC
* * * *
20280629 ACTGCAACTTCATG-GGGATAAGGTTTGCTAT-TTCAACCTGCTCT
1 ACTGCAACTTCA-GAGAGATAA-GATTG-TATCTTCAACTTGCTCC
* * * * * *
20280673 ACTGTAACTTCAGAGAGATAAAGTTTG-AT-AT-GACCTGCTCT
1 ACTGCAACTTCAGAGAGAT-AAGATTGTATCTTCAACTTGCTCC
** * * *
20280714 ACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAA-TCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TG-TA---T--CTTCAACT-TGCTCC
* * *
20280764 ACTGCAACTTCAG-GAAAATACGATTTGCTATCTTTAA-TCTGCTCC
1 ACTGCAACTTCAGAG-AGATAAGA-TTG-TATCTTCAACT-TGCTCC
* * ** *
20280809 ACTGCAACTTCAGGGAGATAGGA-TCCATCATTTTAA-TTCGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTGTATC--TTCAACTT-GCTCC
* * * *
20280853 ACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAA-TATGCTCC
1 ACTGCAACTTCAGAGAGATAAGATT-GTATCTTCAACT-TGCTCC
* * *
20280897 ACTGCAACTTTAGGGAGATAAGACTTGTGTCTTCAACTTGC-CC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTATCTTCAACTTGCTCC
* ** *
20280940 TACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTAC-T-CT--
1 -ACTGCAACTTCAGAGAGAT-AAGATTG-TATCTTCAACTTGCTCC
** * *
20280982 ACTGCAACTTCAGAGAGACGAGATCTGTTATGGTAGATTTAATCTAT--TCC
1 ACTGCAACTTCAGAGAGATAAGAT-TG-TA---T--CTTCAA-CT-TGCTCC
* * * * *
20281032 ACTGCAACTTTAGGGAAATACGATTTGCTATCTTTAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-TTG-TATCTTCAACT-TGCTCC
* * * * ** * *
20281077 ATTGCAAATTCAGGGAGATAGGA-TCCATCATTTTAATTTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTGTATC--TTCAACTTGCTCC
* * * *
20281121 ACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAA-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATT-GTATCTTCAACT-TGCTCC
*
20281165 ACTGCAACTTCAGAGAGATAAGACTTGTATCTTCAACTTGCGCC
1 ACTGCAACTTCAGAGAGATAAGA-TTGTATCTTCAACTTGCTCC
* * * * * *
20281209 ACTGTAACTTCATG-G-GTATAAGGTTTTCTATATCAACTTGCTCT
1 ACTGCAACTTCA-GAGAG-ATAAGATTGTATCT-TCAACTTGCTCC
20281253 ACTGCAACTTCAGAGAGATAA
1 ACTGCAACTTCAGAGAGATAA
20281274 AGTTTGATAT
Statistics
Matches: 1069, Mismatches: 208, Indels: 249
0.70 0.14 0.16
Matches are distributed among these distances:
40 12 0.01
41 99 0.09
42 26 0.02
43 37 0.03
44 567 0.53
45 193 0.18
46 17 0.02
47 4 0.00
48 3 0.00
49 6 0.01
50 100 0.09
51 4 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (43 bp):
ACTGCAACTTCAGAGAGATAAGATTGTATCTTCAACTTGCTCC
Found at i:20281218 original size:88 final size:88
Alignment explanation
Indices: 20279156--20281220 Score: 449
Period size: 88 Copynumber: 23.2 Consensus size: 88
20279146 CTTGGATATA
* * * ** **
20279156 CTCCACTGC-ACTTCAGAGAGATACGGCTT-GTAGCTTCAATCCACTCTGCTGCAACTTCAAGGG
1 CTCCACTGCAACTTCAGGGAGATA-GGATTAGTAACTTCAATCTGCTCCACTGCAACTTC-AGGG
* *
20279219 A-ACAAGA-TTGGTATCTTTAACCTG
64 AGATAAGACTT-GTATCTTTAACTTG
* * * * *
20279243 CTCCACTACAACTTCAGGGAGATAAGACTCGTTATGGTAGA-TTTAATCCGAC-CTACTGCAACT
1 CTCCACTGCAACTTCAGGGAGATAGGA----TTA--GTA-ACTTCAATCTG-CTCCACTGCAACT
* * *
20279306 TCATGGG-TATAGGA-TT-CATCGTTTTAA-TTCG
58 TCA-GGGAGATAAGACTTGTATC--TTTAACTT-G
* * * * * * *
20279337 CTTCACTACAACTTCAAGGAGATAGGATTAATAGCTTCAATCTGCTCCACTGTAACTTCAAGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
20279402 ATAAGA-TTG--GC-TTAACCTT-
66 ATAAGACTTGTATCTTTAA-CTTG
* * * * *
20279421 CTCCACTGAAACTTCAGGGAGATAAGG-TT--TGA-TAT-GATCTGCTCTACTGCAACTTCAGGA
1 CTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
* **
20279481 AGATGAGATCTGTTATGATAGATTTAATCTAT-
64 AGATAAGA-C---T-TG-TATCTTTAA-CT-TG
* * * * * * * * ** *
20279513 -TCTACTGCAAGTTCAGGGAAATACGATTTGCTATCTTTAATCTGTTCCACTATAACTTCAAGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
20279577 GATAGGA--TCCATCATCTTAA-TCTG
65 GATAAGACTTGTATC-T-TTAACT-TG
* * * * * * * *
20279601 TTCCACTGCAATTTCAGGCAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGGG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
20279666 ATAAGACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * ** * * * * **
20279689 CCCCACTGCAACTTCATGGG-GATAAGGTTTTCT-ATTTCAACCTGCTCTACTACAACTTCAAAG
1 CTCCACTGCAACTTCA-GGGAGAT-AGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
20279752 AGATAA-AGTT-TGA--TATGA-TATG
64 AGATAAGACTTGT-ATCTTTAACT-TG
* * * * * *
20279774 CTCTACTGCAACTTCAGAGAGA-CGAGATCTGTTATGGTAGA-TTTAATCTGTTCTACTGCAACT
1 CTCCACTGCAACTTCAGGGAGATAG-GA----TTA--GTA-ACTTCAATCTGCTCCACTGCAACT
* * *
20279837 TCAGGGAAATACGATTTGCTATCTTTAA-TCTG
58 TCAGGGAGATAAGACTTG-TATCTTTAACT-TG
* * *** * *
20279869 CTCCACTGCAACTTCAGGGAGATAGGATCCA-TCATCTT-AATCCATTCCACTACAACTTTAGGG
1 CTCCACTGCAACTTCAGGGAGATAGGAT-TAGT-AACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * *
20279932 AGGTAGGA-TTAGTAACTTCAA-TCTG
64 AGATAAGACTT-GTATCTTTAACT-TG
* * * * **
20279957 CTCCACTGCAATTTCAGGGAGATAAGACTT-GTATCTTCAA-CTTGCCCCACTGCAACTTCATAT
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA-GG
** * *
20280020 G-GATAAGGTTTGCTAT-TTCAACCTG
63 GAGATAAGACTTG-TATCTTTAACTTG
* * * * * * * *
20280045 CTCTACTGTAACTTCAGAGAGATA-AAGTT--TGA-TAT-GATCTGCTCTACTGCAACTTCAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
* * *
20280105 AGATGAGA-TCTGTTATGGTAGATTTACTCTG
64 AGATAAGACT-TG-TAT-CT---TTAACT-TG
* * * * * * * * *
20280136 TTCTACTGCAACTTCAGGGAAATACGATTTGCTATCTTTAATCTGCTCCACTGAAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
20280201 GATATGA--TCCATCATCTTAA-TCTG
65 GATAAGACTTGTATC-T-TTAACT-TG
* * * *
20280225 TTCCACTACAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
20280290 ATAAAACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * * * * * * *
20280313 CCCCACTGCAACTTCATGGG-GATAAGG-TTTGCT-ATTTCAACCTGCTCTACTGTAACTTTAGA
1 CTCCACTGCAACTTCA-GGGAGAT-AGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGG
* * * *
20280375 GAGATAA-AGTT-TGAT-ATGATC-TG
63 GAGATAAGACTTGT-ATCTTTAACTTG
* * * * * ** *
20280398 TTCTACTGCAACTTCAGAGAGA-CGAGATCTGTTATGGTAGA-TTTAATCTATTCCACTACAACT
1 CTCCACTGCAACTTCAGGGAGATAG-GA----TTA--GTA-ACTTCAATCTGCTCCACTGCAACT
* * * *
20280461 TCAGGGAAATACGATTTGCTATCTTTAATTTG
58 TCAGGGAGATAAGACTTG-TATCTTTAACTTG
* * * * *
20280493 CTCCACTGCAACTTCAAGGAGATAGGATCCA-TCA-TGTTAAT-TCGCTCCACTGCAACTTCAAG
1 CTCCACTGCAACTTCAGGGAGATAGGAT-TAGTAACT-TCAATCT-GCTCCACTGCAACTTCAGG
* *
20280555 GATG-TAAGA-TTAGTAACTTCAA-TCTG
63 GA-GATAAGACTT-GTATCTTTAACT-TG
* * * * *
20280581 CTCCACTGCAACTTCAGGAAAATAAGACTT-GTATCTTCAA-CTTGCCCCACTGCAACTTCATGG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACTTCAATC-TGCTCCACTGCAACTTCA-GG
** * *
20280644 G-GATAAGGTTTGCTAT-TTCAACCTG
63 GAGATAAGACTTG-TATCTTTAACTTG
* * * * * * * * *
20280669 CTCTACTGTAACTTCAGAGAGATA-AAGTT--TGA-TAT-GACCTGCTCTACTGCAACTTCAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGGG
** **
20280729 AGACGAGATCTGTTATGGTAGATTTAA-TCTG
64 AGATAAGA-C---T-T-GTATCTTTAACT-TG
* * * * * * *
20280760 TTCCACTGCAACTTCAGGAAAATACGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
20280825 GATAGGA--TCCATCATTTTAA-TTCG
65 GATAAGACTTGTATC--TTTAACTT-G
* * *
20280849 CTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
20280914 ATAAGACTTGTGTCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* * * * * * *
20280937 C-CCTACTGCAACTTCAGAGAGATA-AAGTT--TGA-TAT-GATCTACTCTACTGCAACTTCAGA
1 CTCC-ACTGCAACTTCAGGGAGATAGGA-TTAGTAACT-TCAATCTGCTCCACTGCAACTTCAGG
** **
20280996 GAGACGAGATCTGTTATGGTAGATTTAATCTAT-
63 GAGATAAGA-C---T-T-GTATCTTTAA-CT-TG
* * * * * * * *
20281029 -TCCACTGCAACTTTAGGGAAATACGATTTGCTATCTTTAATCTGCTCCATTGCAAATTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAGGATTAG-TAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* ** *
20281093 GATAGGA--TCCATCATTTTAATTTG
65 GATAAGACTTGTATC--TTTAACTTG
* *
20281117 CTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
*
20281182 ATAAGACTTGTATCTTCAACTTG
66 ATAAGACTTGTATCTTTAACTTG
* *
20281205 CGCCACTGTAACTTCA
1 CTCCACTGCAACTTCA
20281221 TGGGTATAAG
Statistics
Matches: 1415, Mismatches: 380, Indels: 365
0.66 0.18 0.17
Matches are distributed among these distances:
81 28 0.02
82 2 0.00
83 2 0.00
84 36 0.03
85 116 0.08
86 18 0.01
87 48 0.03
88 500 0.35
89 212 0.15
90 36 0.03
91 156 0.11
92 24 0.02
93 7 0.00
94 73 0.05
95 155 0.11
96 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTAGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTATCTTTAACTTG
Found at i:20286987 original size:30 final size:30
Alignment explanation
Indices: 20286951--20287013 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
20286941 ACTTAATAAG
20286951 CAAATGCCTCTAAAATAATAACAAAATCAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
* *
20286981 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
20287011 CAA
1 CAA
20287014 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATCAA
Found at i:20287662 original size:2 final size:2
Alignment explanation
Indices: 20287657--20287683 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20287647 TATATATATA
20287657 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
20287684 AAAGGATGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:20290736 original size:29 final size:29
Alignment explanation
Indices: 20290704--20290783 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 29
20290694 CTCAATTTGC
20290704 TCTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCAAATTTCTCTCAAATCCCTATTTAA
* *
20290733 TCTC-AATTTGCTCTCAATTTCC----T--
1 TCTCAAATTT-CTCTCAAATCCCTATTTAA
20290756 T-TCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCAAATTTCTCTCAAATCCCTATTTAA
20290784 AAGAGCTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 17
0.65 0.07 0.28
Matches are distributed among these distances:
22 12 0.31
23 6 0.15
25 1 0.03
26 1 0.03
28 5 0.13
29 14 0.36
ACGTcount: A:0.28, C:0.28, G:0.01, T:0.44
Consensus pattern (29 bp):
TCTCAAATTTCTCTCAAATCCCTATTTAA
Found at i:20290747 original size:51 final size:52
Alignment explanation
Indices: 20290681--20290783 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 52
20290671 ATAAATCCTT
*
20290681 TCTCTAATTTCCTCTCAATTTGCTCTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
* *
20290733 TCTC-AATTTGCTCTCAATTTCCTTTCAAATTTCTCTCAAATCCCTATTTAA
1 TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
20290784 AAGAGCTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 44 0.92
52 4 0.08
ACGTcount: A:0.25, C:0.28, G:0.02, T:0.45
Consensus pattern (52 bp):
TCTCTAATTTCCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCCTATTTAA
Found at i:20290772 original size:11 final size:11
Alignment explanation
Indices: 20290681--20290771 Score: 59
Period size: 11 Copynumber: 8.5 Consensus size: 11
20290671 ATAAATCCTT
20290681 TCTCTAATTTCC
1 TCTC-AATTTCC
*
20290693 TCTCAATTTGC
1 TCTCAATTTCC
20290704 TCTCAAATTT-C
1 TCTC-AATTTCC
*
20290715 TCTCAA-ATCC
1 TCTCAATTTCC
**
20290725 -CT--ATTTAA
1 TCTCAATTTCC
*
20290733 TCTCAATTTGC
1 TCTCAATTTCC
20290744 TCTCAATTTCC
1 TCTCAATTTCC
*
20290755 TTTCAAATTT-C
1 TCTC-AATTTCC
20290766 TCTCAA
1 TCTCAA
20290772 ATCCCTATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.08
10 5 0.08
11 36 0.58
12 14 0.23
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.45
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:20292641 original size:18 final size:18
Alignment explanation
Indices: 20292610--20292652 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
20292600 TGCCAGGTGC
** *
20292610 GTATCCTAGCCCTTTTAT
1 GTATCCTAAACCTTATAT
20292628 GTATCCTAAACCTTATAT
1 GTATCCTAAACCTTATAT
*
20292646 GTTTCCT
1 GTATCCT
20292653 TTTTCTAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAAACCTTATAT
Found at i:20296554 original size:126 final size:126
Alignment explanation
Indices: 20296328--20296630 Score: 444
Period size: 126 Copynumber: 2.4 Consensus size: 126
20296318 ACGCGGGAGC
* * * *
20296328 TTTTTTCAAGAGCTACTGTAGCAAAAAACGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGTTG
1 TTTTTTCAAGAGCTACTGTAGC-AAAAGCGCGTCCACGTAGAAGCTTCTTTCAGTACTTCTGCTG
20296393 ACAAAGCATCCTGCTTAAAGCATTTTTGACACTGTTCGCTCAGAAACGTCTACTCGAAATTA
65 ACAAAGCATCCTGCTTAAAGCATTTTTGACACTGTTCGCTCAGAAACGTCTACTCGAAATTA
* * *
20296455 TTTTTTCAAGAGCTATTGTAGCAAAAGCTCGTCCACGTAGAAGCTTTTTTCAGTACTTCTGCTGA
1 TTTTTTCAAGAGCTACTGTAGCAAAAGCGCGTCCACGTAGAAGCTTCTTTCAGTACTTCTGCTGA
* * *
20296520 CAAAGTATCTTGCTTAAAGCATTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
66 CAAAGCATCCTGCTTAAAGCATTTTTGACACTGTTCGCTCAGAAACGTCTACTCGAAATTA
* * * * * * *
20296581 TTTTCTCAGGAGCCACTGTAGCAAAAGAGCGTCCACATGGGAGCTTCTTT
1 TTTTTTCAAGAGCTACTGTAGCAAAAGCGCGTCCACGTAGAAGCTTCTTT
20296631 AAATTAATAA
Statistics
Matches: 156, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
126 135 0.87
127 21 0.13
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TTTTTTCAAGAGCTACTGTAGCAAAAGCGCGTCCACGTAGAAGCTTCTTTCAGTACTTCTGCTGA
CAAAGCATCCTGCTTAAAGCATTTTTGACACTGTTCGCTCAGAAACGTCTACTCGAAATTA
Found at i:20297825 original size:29 final size:28
Alignment explanation
Indices: 20297753--20297822 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 28
20297743 CTTTTCAAAC
* * *
20297753 TTTT-AAAATTCAATCTTTTAATTTTTAA
1 TTTTAAAAATT-AATTTTTTAATTGTGAA
* *
20297781 TTTCAGAAACTTAATTTTTTAATTGTGAA
1 TTTTA-AAAATTAATTTTTTAATTGTGAA
20297810 TTTTAAAAATTAA
1 TTTTAAAAATTAA
20297823 ATTAAAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
28 10 0.30
29 18 0.55
30 5 0.15
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (28 bp):
TTTTAAAAATTAATTTTTTAATTGTGAA
Found at i:20303204 original size:9 final size:9
Alignment explanation
Indices: 20303190--20303250 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
20303180 TTTGGTTAAA
20303190 AATTACCCG
1 AATTACCCG
20303199 AATTACCCG
1 AATTACCCG
20303208 AATTACCCG
1 AATTACCCG
20303217 AATTACCCG
1 AATTACCCG
*
20303226 AATTAACCG
1 AATTACCCG
* *
20303235 AATTAACTG
1 AATTACCCG
20303244 AATTACC
1 AATTACC
20303251 GAAAAATACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:20311479 original size:21 final size:21
Alignment explanation
Indices: 20311453--20311493 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
20311443 AGACGAGCAA
* *
20311453 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
20311474 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
20311494 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:20313432 original size:16 final size:16
Alignment explanation
Indices: 20313399--20313432 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20313389 GGAGATTGTT
* *
20313399 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
20313415 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
20313431 AA
1 AA
20313433 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:20314513 original size:23 final size:22
Alignment explanation
Indices: 20314471--20314512 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
20314461 GATTCTGATT
*
20314471 TTTTTTATTAATTTCGTTTTAG
1 TTTTTGATTAATTTCGTTTTAG
20314493 TTTTTGATTATATTT-GTTTT
1 TTTTTGATTA-ATTTCGTTTT
20314513 TTTTATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.17, C:0.02, G:0.10, T:0.71
Consensus pattern (22 bp):
TTTTTGATTAATTTCGTTTTAG
Found at i:20315012 original size:4 final size:4
Alignment explanation
Indices: 20315003--20315027 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
20314993 AGTAAAGTAA
20315003 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
20315028 TAAAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:20322713 original size:36 final size:37
Alignment explanation
Indices: 20322649--20322727 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 37
20322639 GATTAATTTC
*
20322649 TATAAAATTTAAATTATTTTTTTATCTATATATAACT
1 TATATAATTTAAATTATTTTTTTATCTATATATAACT
20322686 TATATAATTTAAATTA-TTTTTTATCTATATATAACT
1 TATATAATTTAAATTATTTTTTTATCTATATATAACT
20322722 TATATA
1 TATATA
20322728 TAAGTACAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 26 0.63
37 15 0.37
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (37 bp):
TATATAATTTAAATTATTTTTTTATCTATATATAACT
Found at i:20322802 original size:25 final size:24
Alignment explanation
Indices: 20322765--20322832 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 24
20322755 ATATTTTTAA
20322765 AAAAATTATATTATTAAATTTACATTT
1 AAAAA-TA-ATTATTAAATTTA-ATTT
* *
20322792 AAAAATAATTATGATATTTAATTT
1 AAAAATAATTATTAAATTTAATTT
*
20322816 -AAAATTATTAGTTAAAT
1 AAAAATAATTA-TTAAAT
20322833 AAGCTTAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 9 0.26
24 8 0.23
25 11 0.31
26 2 0.06
27 5 0.14
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (24 bp):
AAAAATAATTATTAAATTTAATTT
Found at i:20322815 original size:30 final size:29
Alignment explanation
Indices: 20322760--20322816 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
20322750 AAAAAATATT
20322760 TTTAAAAAAATTATATTATTAAATTTACA
1 TTTAAAAAAATTATATTATTAAATTTACA
*
20322789 TTTAAAAATAATTATGA-TATTTAATTTA
1 TTTAAAAA-AATTAT-ATTATTAAATTTA
20322817 AAATTATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 16 0.64
31 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTAAAAAAATTATATTATTAAATTTACA
Found at i:20323038 original size:19 final size:17
Alignment explanation
Indices: 20323014--20323048 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
20323004 TGTGCTAATT
20323014 TTATTATTGTAAAGTAGAG
1 TTATTATT-TAAA-TAGAG
20323033 TTATTATTTAAATAGA
1 TTATTATTTAAATAGA
20323049 ATTTTAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
TTATTATTTAAATAGAG
Found at i:20324574 original size:20 final size:20
Alignment explanation
Indices: 20324551--20324594 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
20324541 CAAAAAAATC
*
20324551 AAATAATTT-TAAAAATTTTA
1 AAAT-ATTTATAAAAATTTCA
20324571 AAATATTTATAAAAATTTCA
1 AAATATTTATAAAAATTTCA
20324591 AAAT
1 AAAT
20324595 TTATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATATTTATAAAAATTTCA
Found at i:20324588 original size:10 final size:9
Alignment explanation
Indices: 20324555--20324593 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
20324545 AAAATCAAAT
20324555 AATTTTAAA
1 AATTTTAAA
20324564 AATTTTAAA
1 AATTTTAAA
20324573 ATATTTATAAA
1 A-ATTT-TAAA
*
20324584 AATTTCAAA
1 AATTTTAAA
20324593 A
1 A
20324594 TTTATATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 14 0.52
10 8 0.30
11 5 0.19
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTTTAAA
Found at i:20326156 original size:16 final size:16
Alignment explanation
Indices: 20326126--20326155 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20326116 TAAATATGTA
20326126 AATTTAATAAGTTTTG
1 AATTTAATAAGTTTTG
20326142 AATTTAATAA-TTTT
1 AATTTAATAAGTTTT
20326156 TTAAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
AATTTAATAAGTTTTG
Found at i:20326910 original size:3 final size:3
Alignment explanation
Indices: 20326904--20326969 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
20326894 CCCTAATAAC
20326904 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
20326952 AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA
20326970 GGCTGTAAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:20327588 original size:9 final size:9
Alignment explanation
Indices: 20327574--20327603 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
20327564 GGGTTTAGAG
20327574 TTTTAGGGT
1 TTTTAGGGT
*
20327583 TTTTAGGAT
1 TTTTAGGGT
20327592 TTTTAGGGT
1 TTTTAGGGT
20327601 TTT
1 TTT
20327604 GGAGAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:20333599 original size:96 final size:96
Alignment explanation
Indices: 20333435--20333637 Score: 406
Period size: 96 Copynumber: 2.1 Consensus size: 96
20333425 GTTTGACACT
20333435 CAGTGCCTCATCGGATAATTCGAAGTAATATGCGCCTAGCGCTATGTAAATTTGACACCTAGTGT
1 CAGTGCCTCATCGGATAATTCGAAGTAATATGCGCCTAGCGCTATGTAAATTTGACACCTAGTGT
20333500 CTCATCAGTTAAACCAAAGTAAATTGGCACC
66 CTCATCAGTTAAACCAAAGTAAATTGGCACC
20333531 CAGTGCCTCATCGGATAATTCGAAGTAATATGCGCCTAGCGCTATGTAAATTTGACACCTAGTGT
1 CAGTGCCTCATCGGATAATTCGAAGTAATATGCGCCTAGCGCTATGTAAATTTGACACCTAGTGT
20333596 CTCATCAGTTAAACCAAAGTAAATTGGCACC
66 CTCATCAGTTAAACCAAAGTAAATTGGCACC
20333627 CAGTGCCTCAT
1 CAGTGCCTCAT
20333638 TGACTCGAAG
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 107 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (96 bp):
CAGTGCCTCATCGGATAATTCGAAGTAATATGCGCCTAGCGCTATGTAAATTTGACACCTAGTGT
CTCATCAGTTAAACCAAAGTAAATTGGCACC
Found at i:20334074 original size:19 final size:19
Alignment explanation
Indices: 20334036--20334071 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20334026 TAGCTACAGA
20334036 ATTAAAACAATTAAAATTC
1 ATTAAAACAATTAAAATTC
*
20334055 ATTAATACAA-TAAAATT
1 ATTAAAACAATTAAAATT
20334072 TCAATTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAACAATTAAAATTC
Found at i:20334693 original size:24 final size:25
Alignment explanation
Indices: 20334647--20334693 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
20334637 TAAGATAACA
** *
20334647 TATTATAATATATTTTAACTTTAAT
1 TATTATAATATATAATAAATTTAAT
20334672 TATTA-AATATATAATAAATTTA
1 TATTATAATATATAATAAATTTA
20334694 CACATAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTATAATATATAATAAATTTAAT
Done.