Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 77 of 141
Found at i:22104190 original size:8 final size:8
Alignment explanation
Indices: 22104177--22104201 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22104167 ACTAAATTGC
22104177 AAAGTTTA
1 AAAGTTTA
22104185 AAAGTTTA
1 AAAGTTTA
22104193 AAAGTTTA
1 AAAGTTTA
22104201 A
1 A
22104202 GGCCGAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (8 bp):
AAAGTTTA
Found at i:22106574 original size:14 final size:14
Alignment explanation
Indices: 22106555--22106595 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
22106545 TGATTAAAGA
* *
22106555 TTAATTAATTTAGT
1 TTAATTAATTAAGC
22106569 TTAATTAACTTAAGC
1 TTAATTAA-TTAAGC
22106584 TTAATTAATTAA
1 TTAATTAATTAA
22106596 CCATTAAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (14 bp):
TTAATTAATTAAGC
Found at i:22109227 original size:30 final size:30
Alignment explanation
Indices: 22109169--22109227 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
22109159 TATTATATGT
**
22109169 TAATTAATTAAGGTAATTAAGGTAAAAACA
1 TAATTAATTAAGGTAATTAACCTAAAAACA
* * *
22109199 TAATTAATTATGTTAATTAACCTTAAAAC
1 TAATTAATTAAGGTAATTAACCTAAAAAC
22109228 TAAGTATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (30 bp):
TAATTAATTAAGGTAATTAACCTAAAAACA
Found at i:22109491 original size:11 final size:11
Alignment explanation
Indices: 22109475--22109504 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22109465 GATAATTAGA
*
22109475 TGAAATTGGTG
1 TGAAATTGATG
22109486 TGAAATTGATG
1 TGAAATTGATG
22109497 TGAAATTG
1 TGAAATTG
22109505 CTAGAAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37
Consensus pattern (11 bp):
TGAAATTGATG
Found at i:22110490 original size:20 final size:19
Alignment explanation
Indices: 22110461--22110499 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
22110451 TAAGGTTATA
22110461 AACATATGAATTAACTAAAT
1 AACATATGAATTAA-TAAAT
*
22110481 AACATGTGAATTAATAAAT
1 AACATATGAATTAATAAAT
22110500 GAAACAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (19 bp):
AACATATGAATTAATAAAT
Found at i:22113847 original size:21 final size:21
Alignment explanation
Indices: 22113802--22113841 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
22113792 AAAATGTTAC
*
22113802 TAAATTTATCATAAAAAATTA
1 TAAATTTATCATAAAAAATAA
22113823 TAAATTT-T-ATAAAAAATAA
1 TAAATTTATCATAAAAAATAA
22113842 ATTAAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATTTATCATAAAAAATAA
Found at i:22116248 original size:13 final size:13
Alignment explanation
Indices: 22116188--22116248 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
22116178 TAAACCAAAA
* *
22116188 TTTTTAAAAATAC
1 TTTTCAAAAACAC
*
22116201 TTATCAAAATA-AC
1 TTTTCAAAA-ACAC
*
22116214 TTTTCTAAAACAC
1 TTTTCAAAAACAC
*
22116227 TTTTTAAAAACAC
1 TTTTCAAAAACAC
*
22116240 TTCTCAAAA
1 TTTTCAAAA
22116249 GTAATGTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 1 0.03
13 36 0.95
14 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTTCAAAAACAC
Found at i:22117964 original size:21 final size:21
Alignment explanation
Indices: 22117913--22117964 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
22117903 AATTCATTAT
* *
22117913 AAAAATATTAAAATTAAATCA
1 AAAAATATTTAAATTAAATAA
*
22117934 AATAAT-TTTAAA-TAAACTAA
1 AAAAATATTTAAATTAAA-TAA
22117954 AAAAATATTTA
1 AAAAATATTTA
22117965 TTTTCTCACA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 9 0.36
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATATTTAAATTAAATAA
Found at i:22119990 original size:23 final size:22
Alignment explanation
Indices: 22119951--22119994 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
22119941 ATTCGTTTTT
* *
22119951 TTATTTTTTTACTATTATTATA
1 TTATTTTATTACAATTATTATA
22119973 TTATTATTATTACAATTATTAT
1 TTATT-TTATTACAATTATTAT
22119995 TTCTATGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATTTTATTACAATTATTATA
Found at i:22125574 original size:21 final size:21
Alignment explanation
Indices: 22125535--22125574 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22125525 ATAATATTAA
* *
22125535 TTTCAATATTAATTGTAAAAT
1 TTTCAATATTAACTATAAAAT
22125556 TTTCAATATTAACTATAAA
1 TTTCAATATTAACTATAAA
22125575 TTATGGCGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (21 bp):
TTTCAATATTAACTATAAAAT
Found at i:22131551 original size:43 final size:42
Alignment explanation
Indices: 22131485--22131641 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
22131475 GGCTCGTACA
* *
22131485 ATGCCAACGTCCCAAAC-GTGGTCTTACATGTAATCAAATAACG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAAAT-ACG
* *
22131528 ATGCCACTGTCCCAGACAGGGTCTTACATGTAATCATATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
** * *
22131570 ACACCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGT-AA--TCAAATACG
*
22131614 ATGCCAATGTCCTAGAC-GTGGTCTTACA
1 ATGCCAATGTCCCAGACAG-GGTCTTACA
22131642 CGATATCACA
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 29 0.31
43 35 0.37
44 26 0.27
45 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
Found at i:22136478 original size:16 final size:16
Alignment explanation
Indices: 22136449--22136518 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
22136439 TTTGGTTCGC
*
22136449 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
22136465 CGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
22136481 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
22136497 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
22136513 TGTAAT
1 TGTAAT
22136519 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.01, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:22136563 original size:45 final size:44
Alignment explanation
Indices: 22136497--22136587 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
22136487 GGATTAGAGG
* *
22136497 TGTAATGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
22136542 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
22136586 TG
1 TG
22136588 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:22136767 original size:16 final size:17
Alignment explanation
Indices: 22136730--22136767 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
22136720 ATTTAATCAT
22136730 ATTTAAACATAATTATA
1 ATTTAAACATAATTATA
*
22136747 A-TTAAATAT-ATTATA
1 ATTTAAACATAATTATA
22136762 ATTTAA
1 ATTTAA
22136768 TAAAATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 7 0.37
16 11 0.58
17 1 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTAAACATAATTATA
Found at i:22136803 original size:22 final size:21
Alignment explanation
Indices: 22136713--22136999 Score: 92
Period size: 22 Copynumber: 14.0 Consensus size: 21
22136703 ATTATCAATA
* *
22136713 ATAA-ATAATTTAATCATATT
1 ATAATATAATTTAATAAAATT
* *
22136733 -TAAACATAATTATAATTAAA-T
1 AT-AATATAATT-TAATAAAATT
*
22136754 ATATTATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
22136775 CTTATATGAATTTACTAAAATT
1 ATAATAT-AATTTAATAAAATT
**
22136797 ATAATAT-A--TAATAGTA-T
1 ATAATATAATTTAATAAAATT
*
22136814 AAAATATAATTTAAAATAATAATT
1 ATAATATAATTT--AATAA-AATT
22136838 ATTAAATATAATTTAATAAAA--
1 A-T-AATATAATTTAATAAAATT
22136859 A-AATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
* * *
22136879 CTTA-AT-A-TTAA-AATATT
1 ATAATATAATTTAATAAAATT
* * * *
22136896 CTTATATGAATTTACTAAAATC
1 ATAATAT-AATTTAATAAAATT
*
22136918 ATAATAT-ATAATACTATAAAA-T
1 ATAATATAAT-TTA--ATAAAATT
* ** **
22136940 ATAATCTAAAATAATTATTATT
1 ATAATATAATTTAA-TAAAATT
*
22136962 A-AATATAATTTAATATAA--
1 ATAATATAATTTAATAAAATT
22136980 AT-ATATAATTTAATAAAATT
1 ATAATATAATTTAATAAAATT
22137000 CTTAGTATTA
Statistics
Matches: 197, Mismatches: 38, Indels: 64
0.66 0.13 0.21
Matches are distributed among these distances:
17 16 0.08
18 45 0.23
19 2 0.01
20 21 0.11
21 38 0.19
22 49 0.25
23 9 0.05
24 7 0.04
26 10 0.05
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
ATAATATAATTTAATAAAATT
Found at i:22136837 original size:13 final size:12
Alignment explanation
Indices: 22136813--22136853 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
22136803 TATAATAGTA
22136813 TAAAATATAATT
1 TAAAATATAATT
22136825 TAAAATAATAATT
1 TAAAAT-ATAATT
*
22136838 ATTAAATATAATT
1 -TAAAATATAATT
22136851 TAA
1 TAA
22136854 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:22136862 original size:18 final size:18
Alignment explanation
Indices: 22136841--22136876 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22136831 AATAATTATT
22136841 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
22136859 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
22136877 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:22136987 original size:18 final size:17
Alignment explanation
Indices: 22136964--22136998 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
22136954 TTATTATTAA
22136964 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
22136982 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
22136999 TCTTAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:22137057 original size:61 final size:60
Alignment explanation
Indices: 22136768--22137059 Score: 192
Period size: 59 Copynumber: 4.8 Consensus size: 60
22136758 TATAATTTAA
* * *
22136768 TAAA-ATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAA-T-ATAAT-T
1 TAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
** * * ** * * * *
22136825 TAAAATAATAATTATTA-AATATAATTTAATAAAAAAATATAAT-TTAATAAAATTCTTAATAT
1 T-AAAT-ATTCTTA-TAGAATTTACTAAAATCATAATATATAATACT-ATAAAATTCTTAATAT
* *
22136887 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-T-ATAATCT
1 T-AAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
* * * * ** * *
22136947 AAAATAATTATTATTA-AATATAATTTAAT-ATAAATATATAAT-TTAATAAAATTCTTAGTAT
1 TAAAT-ATTCTTA-TAGAATTTACTAAAATCAT-AATATATAATACT-ATAAAATTCTTAATAT
22137008 TAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAAT
1 TAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACTATAAAAT
22137060 ATAATCTAAA
Statistics
Matches: 174, Mismatches: 40, Indels: 38
0.69 0.16 0.15
Matches are distributed among these distances:
57 1 0.01
58 7 0.04
59 56 0.32
60 26 0.15
61 48 0.28
62 35 0.20
63 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (60 bp):
TAAATATTCTTATAGAATTTACTAAAATCATAATATATAATACTATAAAATTCTTAATAT
Found at i:22137096 original size:121 final size:120
Alignment explanation
Indices: 22136768--22137075 Score: 528
Period size: 121 Copynumber: 2.6 Consensus size: 120
22136758 TATAATTTAA
* * *
22136768 TAAA-ATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAATTTAAAATA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
*
22136832 ATAATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
66 ATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
22136887 TAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
1 T-AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAAT
* * *
22136952 AATTATTATTAAATATAATTTAATATAAATATATAATTTAATAAAATTCTTAGTAT
65 AATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
*
22137008 TAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
1 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
22137073 ATT
66 ATT
22137076 GATTTTGTGG
Statistics
Matches: 179, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 1 0.01
120 69 0.39
121 109 0.61
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (120 bp):
TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAAATA
ATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATAT
Found at i:22138576 original size:13 final size:13
Alignment explanation
Indices: 22138560--22138589 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22138550 TAGACCAAGC
22138560 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
22138573 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
22138586 TTTT
1 TTTT
22138590 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:22142458 original size:120 final size:120
Alignment explanation
Indices: 22142316--22142673 Score: 659
Period size: 119 Copynumber: 3.0 Consensus size: 120
22142306 TAGATTATAT
*
22142316 ATTAT-TTTTATAGTATTATATATTATGATTTTAGGAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
22142380 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
*
22142435 ATTATATTTTATATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
22142500 AATTTTA-TAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
*
22142554 ATTAAATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
*
22142619 AATTTTATTAAATTATATA-TTTTATTAAATTATATTTAATAATAATTATGTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
22142673 A
1 A
22142674 ATATGATTAA
Statistics
Matches: 232, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
119 157 0.68
120 75 0.32
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
Found at i:22142636 original size:22 final size:18
Alignment explanation
Indices: 22142620--22142654 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
22142610 AATATTAAGA
22142620 ATTTTATTAAATTATA-T
1 ATTTTATTAAATTATATT
22142637 ATTTTATTAAATTATATT
1 ATTTTATTAAATTATATT
22142655 TAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATTAAATTATATT
Found at i:22142873 original size:44 final size:45
Alignment explanation
Indices: 22142810--22142906 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
22142800 CTATTACACC
*
22142810 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * *
22142854 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
22142899 TCCATTAC
1 TCCATTAC
22142907 GCTTCTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:22142907 original size:16 final size:16
Alignment explanation
Indices: 22142886--22142934 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
22142876 TTGATTTGCT
22142886 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
22142902 ATTACGCTTCTATTCC
1 ATTACGCCTCTATTCC
22142918 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
22142934 A
1 A
22142935 ATACATCGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.20, C:0.35, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:22144476 original size:109 final size:109
Alignment explanation
Indices: 22144349--22144733 Score: 492
Period size: 109 Copynumber: 3.5 Consensus size: 109
22144339 AAAAAAAAAA
* *
22144349 TTTTGGGTGCTGGCCTGTCAATGGCCGGTACCCAGTAAACAGTAAATTTTTTTTTTCTTTTTTTT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTTTCTTTTTTTT
*
22144414 -GTGTCAGAGTCAGATATAAAAATACGAAAAAAAATTTAAAATTT
66 CGTGTCAGAATCAGATATAAAAATACGAAAAAAAA-TTAAAATTT
* *
22144458 TTTTTGGTGCTGGTCTGTCAATGGCCGGCACCCAGTGAACAGT-AA--TTTTTTTTCTTTTTTTT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTTTCTTTTTTTT
*
22144520 CGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAATAAAATTTT
66 CGTGTCAGAATCAGATATAAAAATACG----AAA-AAAAATTAAAA-TTT
* * * *
22144570 TTTTTGGTGCTGGCCTTTCAATGGCTGGCACCCAGTGAACAGTAAAATTTTTTTTTCTTTTTTTT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTTTC-TTTTTTT
* * ***
22144635 TCGTGTCAGAATCATATATAAAAATACG-AAAAAAATAAAAAAAA
65 TCGTGTCAGAATCAGATATAAAAATACGAAAAAAAATTAAAATTT
* * * *
22144679 ATTTGGGTGTTGACCTGTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTTT
1 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTT
22144734 CGTCAATGGC
Statistics
Matches: 242, Mismatches: 23, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
106 17 0.07
107 25 0.10
108 2 0.01
109 86 0.36
110 9 0.04
111 10 0.04
112 48 0.20
113 2 0.01
115 9 0.04
116 34 0.14
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (109 bp):
TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTTTCTTTTTTTT
CGTGTCAGAATCAGATATAAAAATACGAAAAAAAATTAAAATTT
Found at i:22144519 original size:221 final size:219
Alignment explanation
Indices: 22144330--22144732 Score: 546
Period size: 221 Copynumber: 1.8 Consensus size: 219
22144320 ATACGAAAAA
*
22144330 GAAAAAAAGAAAAAA-AAAA-TTTTGGGTGCTGGCCTGTCAATGGCCGGTACCCAGTAAACAGTA
1 GAAAAAAAGAAAAAATAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTA
* * * *
22144393 AATTTTTTTTTTC-TTTTTTTT-GTGTCAGAGTCAGATATAAAAATACGAAAAAAAATTTAAAAT
66 AAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGATATAAAAATACG-AAAAAAA-TAAAAAA
*** * **
22144456 TTTTTTTGGTGCTGGTCTGTCAATGGCCGGCACCCAGTGAACAGT-AATTTTTTTTCTTTTTTTT
129 AAATTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTCTTTTTTTT
*
22144520 CGTGTCAGAATCAGATATAAAAATAC
194 AGTGTCAGAATCAGATATAAAAATAC
* * * * *
22144546 GAAAAAAATAAAAAATAAAATTTTTTTTTGGTGCTGGCCTTTCAATGGCTGGCACCCAGTGAACA
1 GAAAAAAAGAAAAAATAAAA---TTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACA
*
22144611 GTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCATATATAAAAATACGAAAAAAATAAAAA
63 GTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAA
* *
22144676 AAAATTTGGGTGTTGACCTGTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTT
128 AAAATTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTT
22144733 TCGTCAATGG
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
216 14 0.09
217 4 0.03
221 93 0.58
222 25 0.16
223 24 0.15
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.35
Consensus pattern (219 bp):
GAAAAAAAGAAAAAATAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTA
AAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAA
ATTTGGGTGCTGACCTGTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTCTTTTTTTTAG
TGTCAGAATCAGATATAAAAATAC
Found at i:22144754 original size:40 final size:40
Alignment explanation
Indices: 22144695--22144774 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
22144685 GTGTTGACCT
*
22144695 GTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTTTC
1 GTCAATGGCCGGCACCTAGTGAACAGTAAAATTTTTTTTC
*
22144735 GTCAATGGCCGGCAGCTAGTGAACAGTAAAATTTTTTTTC
1 GTCAATGGCCGGCACCTAGTGAACAGTAAAATTTTTTTTC
22144775 TTTTTTTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (40 bp):
GTCAATGGCCGGCACCTAGTGAACAGTAAAATTTTTTTTC
Found at i:22144857 original size:148 final size:149
Alignment explanation
Indices: 22144587--22144880 Score: 500
Period size: 148 Copynumber: 2.0 Consensus size: 149
22144577 TGCTGGCCTT
* *
22144587 TCAATGGCTGGCACCCAGTGAACAGTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCATAT
1 TCAATGGCCGGCACCCAGTGAACAGTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
* * *
22144652 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGTTGACCTGTCAATGGCCGGCACCTAGTGA
66 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTATCAATGGCCGGCACCCAGTGA
22144717 ACAGTAAATTTTTTTTTCG
131 ACAGTAAATTTTTTTTTCG
* *
22144736 TCAATGGCCGGCAGCTAGTGAACAGTAAAA-TTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
1 TCAATGGCCGGCACCCAGTGAACAGTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
* *
22144800 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTGA
66 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTATCAATGGCCGGCACCCAGTGA
22144865 ACAGTAAATTTTTTTT
131 ACAGTAAATTTTTTTT
22144881 CTTTTTTTTT
Statistics
Matches: 136, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
148 109 0.80
149 27 0.20
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (149 bp):
TCAATGGCCGGCACCCAGTGAACAGTAAAATTTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGACCTATCAATGGCCGGCACCCAGTGA
ACAGTAAATTTTTTTTTCG
Found at i:22144891 original size:371 final size:370
Alignment explanation
Indices: 22144365--22145040 Score: 961
Period size: 371 Copynumber: 1.8 Consensus size: 370
22144355 GTGCTGGCCT
* * *
22144365 GTCAATGGCCGGTACCCAGTAAACAGTAAATTTTTTTTTTCTTTTTTTTGTGTCAGAGTCAGATA
1 GTCAATGGCCGGCACCCAGTAAACAGTAAATTTTTTTTTTCTTTTTTTCGTGTCAGAATCAGATA
* **** * * *
22144430 TAAAAATACGAAAAAAAATTTAAAATTTTTTTTGGTGCTGGTCTGTCAATGGCCGGCACCCAGTG
66 TAAAAATACGAAAAAAAATTAAAAAAAAATTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTG
*
22144495 AACAGTAATTTTTTTTCTTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAAT-AAAA
131 AACAGTAATTTTTTTTCTTTTTTTTCATGTCAGAATCAGATATAAAAATAC-AAAAAAATAAAAA
** * * * * ***
22144559 AAT-AAAATTTTTTTTTGGTGCTGGCCTTTCAATGGCTGGCACCCAGTGA-ACAGTAAAATTTTT
195 AATAAAAAACTTTTTTGGGTGCTGGCCTGTCAATGGCCGACACCCAGT-ACACAGTAAAA--AAA
* *
22144622 TTTTCTTTT-TTTTTCGTGTCAGAATCATATATAAAAATACGAAAAAAATAAAAAAAAATTTGGG
257 ATTTCTTTTCTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTGGG
22144686 TGTTGACCTGTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTTTC
322 TGTTGACCTGTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTTTC
* * *
22144735 GTCAATGGCCGGCAGCTAGTGAACAGTAAAATTTTTTTTCTT-TTTTTTTCGTGTCAGAATCAGA
1 GTCAATGGCCGGCACCCAGTAAACAGT-AAATTTTTTTT-TTCTTTTTTTCGTGTCAGAATCAGA
*
22144799 TATAAAAATACG-AAAAAAA-TAAAAAAAAATTTGGGTGCTGGCCTATCAATGGCTGGCACCCAG
64 TATAAAAATACGAAAAAAAATTAAAAAAAAATTTGGGTGCTGGCCTATCAATGGCCGGCACCCAG
22144862 TGAACAGTAAATTTTTTTTCTTTTTTTTTCATGTCAGAATCAGATATAAAAATACAAAAAAATAA
129 TGAACAGT-AATTTTTTTTC-TTTTTTTTCATGTCAGAATCAGATATAAAAATACAAAAAAATAA
22144927 AAAAATAAAAAACTTTTTTGGGTGCTGGCCTGTCAATGGCCGACACCCAGTACACAGTAAAAAAA
192 AAAAATAAAAAACTTTTTTGGGTGCTGGCCTGTCAATGGCCGACACCCAGTACACAGTAAAAAAA
* **
22144992 ATTTCTTTTCTTTTTTGTGTCAGAATTGGATATAAAAATACGAAAAAAA
257 ATTTCTTTTCTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAA
22145041 AATTGTAGGA
Statistics
Matches: 268, Mismatches: 30, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
369 43 0.16
370 57 0.21
371 119 0.44
372 49 0.18
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (370 bp):
GTCAATGGCCGGCACCCAGTAAACAGTAAATTTTTTTTTTCTTTTTTTCGTGTCAGAATCAGATA
TAAAAATACGAAAAAAAATTAAAAAAAAATTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTG
AACAGTAATTTTTTTTCTTTTTTTTCATGTCAGAATCAGATATAAAAATACAAAAAAATAAAAAA
ATAAAAAACTTTTTTGGGTGCTGGCCTGTCAATGGCCGACACCCAGTACACAGTAAAAAAAATTT
CTTTTCTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGTT
GACCTGTCAATGGCCGGCACCTAGTGAACAGTAAATTTTTTTTTC
Found at i:22144963 original size:115 final size:107
Alignment explanation
Indices: 22144735--22145040 Score: 364
Period size: 115 Copynumber: 2.8 Consensus size: 107
22144725 TTTTTTTTTC
* *
22144735 GTCAATGGCCGGCAGCTAGTGAACAGTAAAATTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
1 GTCAATGGCCGGCACCCAGTGAACAGT-AAATTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGAT
22144800 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGGCCT
65 ATAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGGCCT
* * *
22144843 ATCAATGGCTGGCACCCAGTGAACAGTAAATTTTTTTTCTTTTTTTTTCATGTCAGAATCAGATA
1 GTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGATA
22144908 TAAAAATAC-AAAAAAATAAAAAAATAAAAAACTTTTTTGGGTGCTGGCCT
66 TAAAAATACGAAAAAAAT----AAA-AAAAAA----TTTGGGTGCTGGCCT
* ***** * **
22144958 GTCAATGGCCGACACCCAGT-ACACAGTAAAAAAAATTTCTTTTCTTTTTTGTGTCAGAATTGGA
1 GTCAATGGCCGGCACCCAGTGA-ACAGTAAATTTTTTTTCTTTT-TTTTTCGTGTCAGAATCAGA
22145022 TATAAAAATACGAAAAAAA
64 TATAAAAATACGAAAAAAA
22145041 AATTGTAGGA
Statistics
Matches: 169, Mismatches: 17, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
106 8 0.05
107 46 0.27
108 23 0.14
110 3 0.02
111 6 0.04
114 1 0.01
115 48 0.28
116 27 0.16
117 7 0.04
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (107 bp):
GTCAATGGCCGGCACCCAGTGAACAGTAAATTTTTTTTCTTTTTTTTTCGTGTCAGAATCAGATA
TAAAAATACGAAAAAAATAAAAAAAAATTTGGGTGCTGGCCT
Found at i:22145316 original size:109 final size:108
Alignment explanation
Indices: 22145203--22145473 Score: 395
Period size: 109 Copynumber: 2.5 Consensus size: 108
22145193 GAAAAAAAAA
*
22145203 TTACTGTTCATTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT-ATTATTTTTC
1 TTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTATTTTTC
* *
22145267 GTATTTTTATATTTGATTTTGACA-GAAAAAAAAGAAAAAATATTT
66 GTATTTTTATATTTGACTCTGACACGAAAAAAAAG---AAATATTT
* * *
22145312 TTACTGTTCACTGGGTGCCGGCTATTGACAGGCCAGCACCCAAATTTTTTTTTTAAATTTTTTTT
1 TTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT-AATTATTTTT
*
22145377 CGTATTTTTATATTTGACTCTGACACGAAAAAAAAGAAATTTTT
65 CGTATTTTTATATTTGACTCTGACACGAAAAAAAAGAAATATTT
* * *
22145421 TTACTGTTTACTGGGTGCCGGCCATTGATAGGCCAGTACCC-AAATTTTTTTTT
1 TTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT
22145474 CTTTTTCGTA
Statistics
Matches: 147, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
108 11 0.07
109 95 0.65
111 31 0.21
112 10 0.07
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (108 bp):
TTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAATTATTTTTC
GTATTTTTATATTTGACTCTGACACGAAAAAAAAGAAATATTT
Found at i:22147843 original size:14 final size:14
Alignment explanation
Indices: 22147824--22147850 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22147814 ATTGAAGGAA
22147824 TTTATTAGAAATAT
1 TTTATTAGAAATAT
22147838 TTTATTAGAAATA
1 TTTATTAGAAATA
22147851 AAACTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTATTAGAAATAT
Found at i:22151598 original size:17 final size:16
Alignment explanation
Indices: 22151576--22151616 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
22151566 TATATTTGTG
22151576 TATATATAATGTACAGA
1 TATATATAATGTA-AGA
*
22151593 TATATAT-ATGTAATA
1 TATATATAATGTAAGA
22151608 TATATATAA
1 TATATATAA
22151617 ATTCTTGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 9 0.41
16 6 0.27
17 7 0.32
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (16 bp):
TATATATAATGTAAGA
Found at i:22153606 original size:15 final size:15
Alignment explanation
Indices: 22153559--22153606 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
22153549 TTTTTTGAAC
* *
22153559 AAAAAAATGAAAATA
1 AAAAAAAAGGAAATA
*
22153574 AAAAATAAA-GAAACA
1 AAAAA-AAAGGAAATA
22153589 AAAAAAAAGGAAATA
1 AAAAAAAAGGAAATA
22153604 AAA
1 AAA
22153607 TTCAACCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 3 0.11
15 22 0.81
16 2 0.07
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.08
Consensus pattern (15 bp):
AAAAAAAAGGAAATA
Found at i:22154041 original size:23 final size:21
Alignment explanation
Indices: 22153989--22154046 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 21
22153979 GGGTTTGTAA
* *
22153989 ATTGGGCTCAGGTAGTTTTAGG
1 ATTGGGCT-AGGTTGGTTTAGG
22154011 ATTGGGCTAGGTTGGTTTAGGG
1 ATTGGGCTAGGTTGGTTTA-GG
22154033 TATTGGGCTAGGTT
1 -ATTGGGCTAGGTT
22154047 AGTTGGGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 9 0.28
22 10 0.31
23 13 0.41
ACGTcount: A:0.16, C:0.07, G:0.40, T:0.38
Consensus pattern (21 bp):
ATTGGGCTAGGTTGGTTTAGG
Found at i:22154852 original size:73 final size:73
Alignment explanation
Indices: 22154623--22155392 Score: 1182
Period size: 73 Copynumber: 10.6 Consensus size: 73
22154613 TGGCATGTGA
* * * * * *
22154623 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAAAAACT-AAAGATA
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAAGCAGAAATTGAAA-ATA
22154685 CCTCAACATGTG
64 CCTCAAC--GTG
* * * *
22154697 AAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAA-CAGAAATTGAAAT
1 -TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAAGCAGAAATTGAAAA
*
22154759 TACCTCAGCGTG
62 TACCTCAACGTG
** *
22154771 TCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
22154836 TCAATGTG
66 TCAACGTG
* *
22154844 TCTTGAGGCTCAACTCATTTCTCGCAATATGGGTTGAATTTTGAAAA-CAGAAATTGAAATTACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
22154908 TCAATGTG
66 TCAACGTG
*
22154916 TCTTGAGGCTCAACTCATTTCTCGCAATATGAATTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22154981 TCAACGTG
66 TCAACGTG
* *
22154989 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAA-CAGAAATTGAAATTACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155053 TCAACGTG
66 TCAACGTG
22155061 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155126 TCAACGTG
66 TCAACGTG
22155134 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155199 TCAACGTG
66 TCAACGTG
*
22155207 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155272 TCAACGTG
66 TCAACGTG
* *
22155280 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-TAGAAATTGAAATTACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155344 TCAACGTG
66 TCAACGTG
22155352 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
22155393 CCTTGGAAAG
Statistics
Matches: 649, Mismatches: 35, Indels: 26
0.91 0.05 0.04
Matches are distributed among these distances:
71 5 0.01
72 205 0.32
73 352 0.54
74 35 0.05
75 25 0.04
76 20 0.03
77 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (73 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
TCAACGTG
Found at i:22154924 original size:145 final size:145
Alignment explanation
Indices: 22154623--22155392 Score: 1228
Period size: 145 Copynumber: 5.3 Consensus size: 145
22154613 TGGCATGTGA
* * * * * *
22154623 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAAAAACT-AAAGATA
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAAGCAGAAATTGAAA-ATA
* * *
22154685 CCTCAACATGTGAAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAACA
64 CCTCAAC--GTG-TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACA
*
22154748 GAAATTGAAATTACCTCAGCGTG
123 GAAATTGAAATTACCTCAACGTG
** *
22154771 TCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
* *
22154836 TCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGGGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
*
22154901 AATTACCTCAATGTG
131 AATTACCTCAACGTG
*
22154916 TCTTGAGGCTCAACTCATTTCTCGCAATATGAATTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
22154981 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
22155046 AATTACCTCAACGTG
131 AATTACCTCAACGTG
22155061 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
22155126 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTG
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTG
*
22155191 AAAATACCTCAACGTG
130 AAATTACCTCAACGTG
*
22155207 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
22155272 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
22155337 AATTACCTCAACGTG
131 AATTACCTCAACGTG
22155352 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
22155393 CCTTGGAAAG
Statistics
Matches: 586, Mismatches: 30, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
144 5 0.01
145 345 0.59
146 147 0.25
147 32 0.05
148 7 0.01
149 47 0.08
150 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (145 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
AATTACCTCAACGTG
Found at i:22155004 original size:218 final size:218
Alignment explanation
Indices: 22154623--22155392 Score: 1194
Period size: 218 Copynumber: 3.5 Consensus size: 218
22154613 TGGCATGTGA
* * * * * *
22154623 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAAAAACT-AAAGATAC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAACAGAAATTGAAA-ATAC
* * *
22154686 CTCAACATGTGAAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAA-CA
64 CTCAAC--GTG-TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAAGCA
* * ** *
22154748 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTT
123 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
*
22154813 GAAAAGCAGAAATTGAAAATACCTCAATGTG
188 GAAAAGCAGAAATTGAAAATACCTCAACGTG
* *
22154844 TCTTGAGGCTCAACTCATTTCTCGCAATATGGGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
* *
22154909 CAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAATTGAATTTTGAAAAGCAGAAATTGA
66 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGA
*
22154974 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAA-CA
131 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCA
*
22155038 GAAATTGAAATTACCTCAACGTG
196 GAAATTGAAAATACCTCAACGTG
22155061 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
22155126 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTG
65 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTG
22155191 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGC
130 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGC
*
22155256 AAAAATTGAAAATACCTCAACGTG
195 AGAAATTGAAAATACCTCAACGTG
* *
22155280 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
22155345 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
66 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
22155393 CCTTGGAAAG
Statistics
Matches: 512, Mismatches: 30, Indels: 18
0.91 0.05 0.03
Matches are distributed among these distances:
217 82 0.16
218 270 0.53
219 102 0.20
221 27 0.05
222 31 0.06
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (218 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGA
AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCA
GAAATTGAAAATACCTCAACGTG
Found at i:22175710 original size:44 final size:43
Alignment explanation
Indices: 22175568--22175753 Score: 196
Period size: 43 Copynumber: 4.3 Consensus size: 43
22175558 AAGCACCATT
* * *
22175568 AAAACGTCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCA
1 AAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCA
* * * * *
22175611 CAAACGCCGCTAAAAACCAAGACCTTTAGTGGCACTTTTCCTA
1 AAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCA
* *
22175654 AAAATGCCGCTAAAGACCAAGACCTTTAGCAGCGCTTTTTCCCA
1 AAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTTTCCCA
* * * * *
22175698 AAAACGCTGCTAAAGAACATGATCTTTAGCGACGCTTTAT--CA
1 AAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TCCCA
*
22175740 CAAACGCCGCTAAA
1 AAAACGCCGCTAAA
22175754 AGTACAATTC
Statistics
Matches: 117, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
42 14 0.12
43 67 0.57
44 36 0.31
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
AAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCA
Found at i:22177876 original size:40 final size:40
Alignment explanation
Indices: 22177813--22177897 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
22177803 TAGCTTGAAC
* * *
22177813 ATCAACACTTCAATATTTAATATGTAAGGAATTATCAAAA
1 ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
* *
22177853 ATCAACATTTCAATAATTT-ATATGCAAGAAATTAACACAA
1 ATCAACACTTCAAT-ATTTAATATGCAAGAAATTAACAAAA
22177893 ATCAA
1 ATCAA
22177898 TCTTACAACA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (40 bp):
ATCAACACTTCAATATTTAATATGCAAGAAATTAACAAAA
Found at i:22178071 original size:86 final size:85
Alignment explanation
Indices: 22177973--22178160 Score: 252
Period size: 86 Copynumber: 2.2 Consensus size: 85
22177963 GGCATTAGGG
* * * * * *
22177973 CTAAATCTTCAATTTCTATAACGATTTATATGCGACAAATTAACAAAAATCAATGGTTCAAGTTC
1 CTAAATTTTCAATTT-TATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTC
* *
22178038 ATGTATTTACCAAAAATCAGA
65 ATGCATTTACCAAAAAGCAGA
*
22178059 CT-AATTTGTCAATATTTATAACAACTTATATGCAACAAATTAGCAAAAATAAATGGATCAAGTT
1 CTAAATTT-TCAAT-TTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTT
*
22178123 CATGCATTTACCAACAAGCAGA
64 CATGCATTTACCAAAAAGCAGA
22178145 CTAAATTTTCAATTTT
1 CTAAATTTTCAATTTT
22178161 CAATTTTTAA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
85 7 0.08
86 75 0.84
87 7 0.08
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (85 bp):
CTAAATTTTCAATTTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGATCAAGTTCA
TGCATTTACCAAAAAGCAGA
Found at i:22178423 original size:86 final size:87
Alignment explanation
Indices: 22178256--22178425 Score: 207
Period size: 86 Copynumber: 2.0 Consensus size: 87
22178246 ATTTCAGCAA
* * * * * * * *
22178256 TTTACATGCAAAAAATTAGCAAAAATTAACAGTTCATGTATAATGTATTTACCAAAAACCGGACC
1 TTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACCAGACC
*
22178321 AACTTGTCAATTTTTATAACAT
66 AAATTGTCAATTTTTATAACAT
* * * *
22178343 TTTAAATGCAACAAATTAACACAAATTAACAATACAAGT-TCATATATTCACCAAAAACCAGACT
1 TTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACCAGACC
*
22178407 AAATTTTCAATTTTTATAA
66 AAATTGTCAATTTTTATAA
22178426 AATAAGAGGA
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
86 37 0.54
87 32 0.46
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.32
Consensus pattern (87 bp):
TTTAAATGCAAAAAATTAACAAAAATTAACAATACAAGTATAATATATTCACCAAAAACCAGACC
AAATTGTCAATTTTTATAACAT
Found at i:22181362 original size:20 final size:19
Alignment explanation
Indices: 22181326--22181377 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
22181316 TTTTAAATAA
22181326 ATAAT-TTTTGAAAAATTA-
1 ATAATATTTT-AAAAATTAG
22181344 AGTAATATTTTAAAGAATTAG
1 A-TAATATTTTAAA-AATTAG
22181365 ATAA-ATTTTAAAA
1 ATAATATTTTAAAA
22181378 TTTTTATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 15 0.50
20 12 0.40
21 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
ATAATATTTTAAAAATTAG
Found at i:22181680 original size:10 final size:10
Alignment explanation
Indices: 22181632--22181692 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
22181622 AAAATAAAAG
22181632 TTTAAAATCTT
1 TTTAAAATC-T
* *
22181643 TTTTAAATTT
1 TTTAAAATCT
**
22181653 TTTAAAAAAT
1 TTTAAAATCT
22181663 TTTAAAATCT
1 TTTAAAATCT
22181673 TTTAAAATTCAT
1 TTTAAAA-TC-T
22181685 TTTAAAAT
1 TTTAAAAT
22181693 TTTAAATCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 23 0.56
11 10 0.24
12 8 0.20
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:22181689 original size:12 final size:12
Alignment explanation
Indices: 22181661--22181693 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
22181651 TTTTTAAAAA
22181661 ATTTTAAAA-TC
1 ATTTTAAAATTC
22181672 -TTTTAAAATTC
1 ATTTTAAAATTC
22181683 ATTTTAAAATT
1 ATTTTAAAATT
22181694 TTAAATCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 10 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTAAAATTC
Found at i:22181692 original size:30 final size:29
Alignment explanation
Indices: 22181626--22181698 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
22181616 ATTATAAAAA
* *
22181626 TAAAAGTTTAAAATCTTTTTTAAATTTTT
1 TAAAATTTTAAAATCTTTTTAAAATTTTT
22181655 TAAAAAATTTTAAAATC-TTTTAAAATTCATTT
1 T--AAAATTTTAAAATCTTTTTAAAATT--TTT
22181687 TAAAATTTTAAA
1 TAAAATTTTAAA
22181699 TCACGTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 1 0.03
30 20 0.53
31 13 0.34
32 4 0.11
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (29 bp):
TAAAATTTTAAAATCTTTTTAAAATTTTT
Found at i:22185995 original size:10 final size:10
Alignment explanation
Indices: 22185947--22186007 Score: 61
Period size: 10 Copynumber: 5.8 Consensus size: 10
22185937 AAAATAAAAG
22185947 TTTAAAATCTT
1 TTTAAAATC-T
* *
22185958 TTTTAAATTT
1 TTTAAAATCT
22185968 TTTAAAAAT-T
1 TTT-AAAATCT
22185978 TTTAAAATCT
1 TTTAAAATCT
22185988 TTTAAAATTCAT
1 TTTAAAA-TC-T
22186000 TTTAAAAT
1 TTTAAAAT
22186008 TTTAAATCAC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 5 0.12
10 16 0.37
11 14 0.33
12 8 0.19
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:22186928 original size:7 final size:7
Alignment explanation
Indices: 22186916--22187010 Score: 66
Period size: 7 Copynumber: 13.3 Consensus size: 7
22186906 AACACTTAAC
22186916 CCCTAAA
1 CCCTAAA
22186923 CCCTAAA
1 CCCTAAA
*
22186930 CCTTAAA
1 CCCTAAA
* *
22186937 CCGTTAA
1 CCCTAAA
*
22186944 CCATAAA
1 CCCTAAA
*
22186951 CCTTAAAA
1 CCCT-AAA
22186959 CCCTAAA
1 CCCTAAA
*
22186966 CTC-ATAA
1 CCCTA-AA
*
22186973 CCCTCAA
1 CCCTAAA
*
22186980 CCCTTAA
1 CCCTAAA
*
22186987 CCTCTAAC
1 CC-CTAAA
*
22186995 CCCTAAC
1 CCCTAAA
22187002 CCCTAAA
1 CCCTAAA
22187009 CC
1 CC
22187011 TTATTTAATA
Statistics
Matches: 70, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
6 1 0.01
7 58 0.83
8 11 0.16
ACGTcount: A:0.38, C:0.41, G:0.01, T:0.20
Consensus pattern (7 bp):
CCCTAAA
Found at i:22187140 original size:25 final size:25
Alignment explanation
Indices: 22187112--22187162 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
22187102 GCTCTTAACC
*
22187112 TCTAATCCATAACCCCTATACCCCG
1 TCTAACCCATAACCCCTATACCCCG
22187137 TCTAACCCATAACCCCTATACCCCG
1 TCTAACCCATAACCCCTATACCCCG
22187162 T
1 T
22187163 TACCCTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.45, G:0.04, T:0.24
Consensus pattern (25 bp):
TCTAACCCATAACCCCTATACCCCG
Found at i:22187680 original size:41 final size:41
Alignment explanation
Indices: 22187635--22187828 Score: 162
Period size: 41 Copynumber: 4.7 Consensus size: 41
22187625 ATATGTTTTT
22187635 GCGGCGCTTTACAAAAAACGCCGCTAAAGGTCTACGCATTA
1 GCGGCGCTTTACAAAAAACGCCGCTAAAGGTCTACGCATTA
* * * * *
22187676 GCGGCGCTTCATGAAAAAACGCCGCTAAAGGTTTGCACATTA
1 GCGGCGCTTTA-CAAAAAACGCCGCTAAAGGTCTACGCATTA
* * * * * *
22187718 ACGGCG-ATTCCTTACAAACGCCGCTAAAGGTC-AGTGCATTA
1 GCGGCGCTTTAC-AAAAAACGCCGCTAAAGGTCTA-CGCATTA
* * *
22187759 GCGGCGC-TTCCTGAAAAACGCCGCTAAAGGTCCACGCATTA
1 GCGGCGCTTTAC-AAAAAACGCCGCTAAAGGTCTACGCATTA
* **
22187800 GCGACGCTTCT-TGAAAAACGCCGCTAAAG
1 GCGGCGCTT-TACAAAAAACGCCGCTAAAG
22187829 ACCCACAAGG
Statistics
Matches: 124, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
41 90 0.73
42 33 0.27
43 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (41 bp):
GCGGCGCTTTACAAAAAACGCCGCTAAAGGTCTACGCATTA
Found at i:22187968 original size:40 final size:38
Alignment explanation
Indices: 22187924--22188000 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
22187914 GCTTTCCTAA
*
22187924 AAGCGCCGCTAATACTCGATCTTTAGCGGCGTTTTTTGTG
1 AAGCGCCGCTAATACTC-A-ATTTAGCGGCGTTTTTTGTG
* *
22187964 AAGCGCCGCTACTGCTCAATTTAGCGGCGTTTTTTGT
1 AAGCGCCGCTAATACTCAATTTAGCGGCGTTTTTTGT
22188001 ACAAACGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 18 0.53
39 1 0.03
40 15 0.44
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (38 bp):
AAGCGCCGCTAATACTCAATTTAGCGGCGTTTTTTGTG
Found at i:22189074 original size:76 final size:76
Alignment explanation
Indices: 22188979--22189178 Score: 194
Period size: 78 Copynumber: 2.6 Consensus size: 76
22188969 GAAATTAGGG
* * *
22188979 ATGTATAT-ATTAGATTCGAATATGTATGAGTATACAAGTATAAGTTCATGTTTTGATTATAAG-
1 ATGTATATGA-TAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGA-AATAAGA
22189042 TATGTAA-TTATAT
64 TATG-AATTTATAT
* * * * * * *
22189055 ATGTATATGATAGACTCGAATATATAAATAAATATACATGTATAAATTCTTGTATTGAAATTAGA
1 ATGTATATGATAGATTCGAATATGT--ATGAGTATACATGTATAAGTTCATGTATTGAAATAAGA
22189120 TATGAATTTATAT
64 TATGAATTTATAT
* *
22189133 ATGTATATG-TGAGGTTCGAATGTGTATG-GTTATACATGTATAAGTT
1 ATGTATATGAT-AGATTCGAATATGTATGAG-TATACATGTATAAGTT
22189179 TTATATTGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
76 38 0.38
77 8 0.08
78 54 0.54
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (76 bp):
ATGTATATGATAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATA
TGAATTTATAT
Found at i:22189617 original size:41 final size:41
Alignment explanation
Indices: 22189571--22189722 Score: 241
Period size: 41 Copynumber: 3.7 Consensus size: 41
22189561 CAGGCTTAGC
22189571 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
* *
22189612 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
* ** *
22189653 GCATAGCAGGCTAAGTGCTGGTGAACTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
22189694 GCCTAGCAGGCTAAGTGCCAGTGAATCTG
1 GCCTAGCAGGCTAAGTGCCAGTG-ATCTG
22189723 TTTAAATTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 96 0.96
42 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
Found at i:22189933 original size:36 final size:36
Alignment explanation
Indices: 22189893--22189988 Score: 101
Period size: 34 Copynumber: 2.7 Consensus size: 36
22189883 GTTGGATATA
* *
22189893 TATATATGTATGCATTCGACATATGTGGATT-ATAAG
1 TATATATGTATGCATTCGGCATATGTAG-TTGATAAG
22189929 TATATATG--TGCATTCGGCACT-TGTAGTTGATAAG
1 TATATATGTATGCATTCGGCA-TATGTAGTTGATAAG
* * *
22189963 TATAAATATATGCATTTGGCATATGT
1 TATATATGTATGCATTCGGCATATGT
22189989 TTTTGAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
33 2 0.04
34 25 0.50
35 2 0.04
36 21 0.42
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (36 bp):
TATATATGTATGCATTCGGCATATGTAGTTGATAAG
Found at i:22191232 original size:10 final size:10
Alignment explanation
Indices: 22191184--22191244 Score: 61
Period size: 10 Copynumber: 5.8 Consensus size: 10
22191174 AAAATAAAAG
22191184 TTTAAAATCTT
1 TTTAAAATC-T
* *
22191195 TTTTAAATTT
1 TTTAAAATCT
22191205 TTTAAAAAT-T
1 TTT-AAAATCT
22191215 TTTAAAATCT
1 TTTAAAATCT
22191225 TTTAAAATTCAT
1 TTTAAAA-TC-T
22191237 TTTAAAAT
1 TTTAAAAT
22191245 TTTAAATCAC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 5 0.12
10 16 0.37
11 14 0.33
12 8 0.19
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:22192251 original size:14 final size:14
Alignment explanation
Indices: 22192201--22192251 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
22192191 TAAAACCCTA
* *
22192201 AACCCATAACGCAT
1 AACCCCTAACCCAT
* *
22192215 AACCCCCAACCCCT
1 AACCCCTAACCCAT
*
22192229 AACCTCTAACCCAT
1 AACCCCTAACCCAT
22192243 AACCCCTAA
1 AACCCCTAA
22192252 ACCTTATTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.37, C:0.47, G:0.02, T:0.14
Consensus pattern (14 bp):
AACCCCTAACCCAT
Found at i:22193710 original size:76 final size:76
Alignment explanation
Indices: 22193615--22193814 Score: 194
Period size: 78 Copynumber: 2.6 Consensus size: 76
22193605 GAAATTAGGG
* * *
22193615 ATGTATAT-ATTAGATTCGAATATGTATGAGTATACAAGTATAAGTTCATGTTTTGATTATAAG-
1 ATGTATATGA-TAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGA-AATAAGA
22193678 TATGTAA-TTATAT
64 TATG-AATTTATAT
* * * * * * *
22193691 ATGTATATGATAGACTCGAATATATAAATAAATATACATGTATAAATTCTTGTATTGAAATTAGA
1 ATGTATATGATAGATTCGAATATGT--ATGAGTATACATGTATAAGTTCATGTATTGAAATAAGA
22193756 TATGAATTTATAT
64 TATGAATTTATAT
* *
22193769 ATGTATATG-TGAGGTTCGAATGTGTATG-GTTATACATGTATAAGTT
1 ATGTATATGAT-AGATTCGAATATGTATGAG-TATACATGTATAAGTT
22193815 TTATATTGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
76 38 0.38
77 8 0.08
78 54 0.54
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (76 bp):
ATGTATATGATAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATA
TGAATTTATAT
Found at i:22194253 original size:41 final size:41
Alignment explanation
Indices: 22194207--22194358 Score: 241
Period size: 41 Copynumber: 3.7 Consensus size: 41
22194197 CAGGCTTAGC
22194207 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
* *
22194248 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
* ** *
22194289 GCATAGCAGGCTAAGTGCTGGTGAACTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
22194330 GCCTAGCAGGCTAAGTGCCAGTGAATCTG
1 GCCTAGCAGGCTAAGTGCCAGTG-ATCTG
22194359 TTTAAATTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 96 0.96
42 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAA
Found at i:22194569 original size:36 final size:36
Alignment explanation
Indices: 22194529--22194624 Score: 101
Period size: 34 Copynumber: 2.7 Consensus size: 36
22194519 GTTGGATATA
* *
22194529 TATATATGTATGCATTCGACATATGTGGATT-ATAAG
1 TATATATGTATGCATTCGGCATATGTAG-TTGATAAG
22194565 TATATATG--TGCATTCGGCACT-TGTAGTTGATAAG
1 TATATATGTATGCATTCGGCA-TATGTAGTTGATAAG
* * *
22194599 TATAAATATATGCATTTGGCATATGT
1 TATATATGTATGCATTCGGCATATGT
22194625 TTTTGAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
33 2 0.04
34 25 0.50
35 2 0.04
36 21 0.42
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (36 bp):
TATATATGTATGCATTCGGCATATGTAGTTGATAAG
Found at i:22196640 original size:14 final size:14
Alignment explanation
Indices: 22196621--22196647 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22196611 TTCTAAAGGA
22196621 AAAAGAAAAAAATT
1 AAAAGAAAAAAATT
22196635 AAAAGAAAAAAAT
1 AAAAGAAAAAAAT
22196648 ATATTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
AAAAGAAAAAAATT
Found at i:22197020 original size:75 final size:75
Alignment explanation
Indices: 22196941--22197216 Score: 552
Period size: 75 Copynumber: 3.7 Consensus size: 75
22196931 GATAAATCAA
22196941 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
1 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
22197006 TCAAATAGTT
66 TCAAATAGTT
22197016 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
1 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
22197081 TCAAATAGTT
66 TCAAATAGTT
22197091 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
1 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
22197156 TCAAATAGTT
66 TCAAATAGTT
22197166 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTT
1 TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTT
22197217 TACCGATTCA
Statistics
Matches: 201, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 201 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (75 bp):
TTTAATTAATCTTTACTCAATTTAATTGGTTTTTCGGTTCAACTGATATTTAGCTTAGATTCAGT
TCAAATAGTT
Found at i:22217914 original size:12 final size:12
Alignment explanation
Indices: 22217897--22217922 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22217887 AATAAAACGA
22217897 AGCCAATAGTTT
1 AGCCAATAGTTT
22217909 AGCCAATAGTTT
1 AGCCAATAGTTT
22217921 AG
1 AG
22217923 TGACCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (12 bp):
AGCCAATAGTTT
Found at i:22221365 original size:21 final size:21
Alignment explanation
Indices: 22221320--22221392 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
22221310 TGTTAAGTCA
* * * *
22221320 TATGAGTTTCTGTTTAACCTT
1 TATGGGTTTCCGTTCAACCCT
22221341 TATGGGTTTCCGTTCAACTCC-
1 TATGGGTTTCCGTTCAAC-CCT
* *
22221362 TATGAGCTTCCGTTCAACCCT
1 TATGGGTTTCCGTTCAACCCT
*
22221383 TACGGGTTTC
1 TATGGGTTTC
22221393 TGTTTAGCAC
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 2 0.05
21 38 0.93
22 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.41
Consensus pattern (21 bp):
TATGGGTTTCCGTTCAACCCT
Found at i:22224857 original size:25 final size:25
Alignment explanation
Indices: 22224825--22224877 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
22224815 ACTATTTTTC
22224825 TTAGATGCATTGTCAAAAAATAATT
1 TTAGATGCATTGTCAAAAAATAATT
22224850 TTAGATGCATTGTCAAAAAATAATT
1 TTAGATGCATTGTCAAAAAATAATT
22224875 TTA
1 TTA
22224878 AATTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (25 bp):
TTAGATGCATTGTCAAAAAATAATT
Found at i:22236060 original size:13 final size:13
Alignment explanation
Indices: 22236042--22236066 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22236032 ACAAACGATA
22236042 AAATTTTCACACG
1 AAATTTTCACACG
22236055 AAATTTTCACAC
1 AAATTTTCACAC
22236067 ACATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:22236497 original size:11 final size:11
Alignment explanation
Indices: 22236481--22236510 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
22236471 AGCAAGTAAA
22236481 TCTCATTCTCT
1 TCTCATTCTCT
22236492 TCTCATTCTCT
1 TCTCATTCTCT
22236503 TCTCATTC
1 TCTCATTC
22236511 CCATTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.37, G:0.00, T:0.53
Consensus pattern (11 bp):
TCTCATTCTCT
Found at i:22239874 original size:103 final size:103
Alignment explanation
Indices: 22239630--22240101 Score: 829
Period size: 103 Copynumber: 4.6 Consensus size: 103
22239620 TAACCGTTAT
* * *
22239630 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
* * *
22239695 GAATCAGCACTTAGCAACCCCC-TTCACATTTTAGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* ** *
22239732 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
22239797 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
22239835 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
22239900 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
*
22239938 CGGTGGAATCAGCACTTAGCAACCTCCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
22240003 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
*
22240041 CGGTGGAATCAGTACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
22240102 TATATGCAAT
Statistics
Matches: 352, Mismatches: 17, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
102 80 0.23
103 272 0.77
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:22252885 original size:18 final size:19
Alignment explanation
Indices: 22252852--22252889 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
22252842 AGACTCCAGG
*
22252852 TCTGATTATTTTCAATCAT
1 TCTGATTATCTTCAATCAT
22252871 TCTGATT-TCTTCAATCAT
1 TCTGATTATCTTCAATCAT
22252889 T
1 T
22252890 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.24, C:0.18, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTATCTTCAATCAT
Found at i:22259647 original size:13 final size:14
Alignment explanation
Indices: 22259618--22259646 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22259608 GGTCATATAA
22259618 TTGGTTGATATTTT
1 TTGGTTGATATTTT
22259632 TTGGTTGATATTTT
1 TTGGTTGATATTTT
22259646 T
1 T
22259647 GTGTGTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.21, T:0.66
Consensus pattern (14 bp):
TTGGTTGATATTTT
Found at i:22263863 original size:43 final size:43
Alignment explanation
Indices: 22263810--22264165 Score: 457
Period size: 43 Copynumber: 8.3 Consensus size: 43
22263800 TTATTTCTAA
* *
22263810 AAACACCGCTAAAGACCATGACCTTTAGCGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
* *
22263853 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTGCCAC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
* *
22263896 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTGCCAC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
* * *
22263939 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTGCCGC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
** *
22263982 AAACGCCGCTAAAGACCACGACCTTTAGCAACG-TTTCTGTCGC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTT-TGTCAC
* *
22264025 AAATGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCGC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
* * * * *
22264068 AAATGCCGTTAAAGACCACAACCTTTAGTGGCGCTTTTGTCGC
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
* * * * *
22264111 AAATGCCGCTATAGAACA-AACCTTTAGCGGCGCTTTTCG-CAA
1 AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTT-GTCAC
22264153 AAACGCCGCTAAA
1 AAACGCCGCTAAA
22264166 AACATATCAT
Statistics
Matches: 287, Mismatches: 23, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
42 32 0.11
43 252 0.88
44 3 0.01
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGTCAC
Found at i:22264221 original size:18 final size:19
Alignment explanation
Indices: 22264198--22264233 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22264188 TTTTAATCAA
*
22264198 ATAAATTTTAT-TTTTATG
1 ATAAATATTATGTTTTATG
22264216 ATAAATATTATGTTTTAT
1 ATAAATATTATGTTTTAT
22264234 TTTTTAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (19 bp):
ATAAATATTATGTTTTATG
Found at i:22265273 original size:23 final size:23
Alignment explanation
Indices: 22265223--22265274 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
22265213 GTTAGGTGTC
* *
22265223 AGTATAAAGACATGTCAGATATG
1 AGTATGAAGACATGTCAGAGATG
* * *
22265246 GGTATGAAGGCATGTCTGAGATG
1 AGTATGAAGACATGTCAGAGATG
22265269 AGTATG
1 AGTATG
22265275 TTCAAAGTGA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (23 bp):
AGTATGAAGACATGTCAGAGATG
Found at i:22266152 original size:187 final size:187
Alignment explanation
Indices: 22265837--22266210 Score: 739
Period size: 187 Copynumber: 2.0 Consensus size: 187
22265827 AACCTTGAGG
22265837 TAGGCACAAATATGTTACTAAGTTAGAACTCTGAAGGACCAATCGGAATAAATGAAATGACTAAA
1 TAGGCACAAATATGTTACTAAGTTAGAACTCTGAAGGACCAATCGGAATAAATGAAATGACTAAA
22265902 ATAGGCAAAATAAAGAATACACAGAATGGGAAATATATAAAAATGTTTAGAAAAAAAATAATTTA
66 ATAGGCAAAATAAAGAATACACAGAATGGGAAATATATAAAAATGTTTAGAAAAAAAATAATTTA
22265967 TTCGAAAATAATAGCAATGAGAACTGATTTTAGACCGCCCCCCCAAAAAAATTCTAC
131 TTCGAAAATAATAGCAATGAGAACTGATTTTAGACCGCCCCCCCAAAAAAATTCTAC
22266024 TAGGCACAAATATGTTACTAAGTTAGAACTCTGAAGGACCAATCGGAATAAATGAAATGACTAAA
1 TAGGCACAAATATGTTACTAAGTTAGAACTCTGAAGGACCAATCGGAATAAATGAAATGACTAAA
22266089 ATAGGCAAAATAAAGAATACACAGAATGGGAAATATATAAAAATGTTTAGAAAAAAAATAATTTA
66 ATAGGCAAAATAAAGAATACACAGAATGGGAAATATATAAAAATGTTTAGAAAAAAAATAATTTA
*
22266154 TTCGAAAATAATAGCAATGAGAACTGATTTTAGACCGCCCCCCCAAAAAAGTTCTAC
131 TTCGAAAATAATAGCAATGAGAACTGATTTTAGACCGCCCCCCCAAAAAAATTCTAC
22266211 CCTTAGCTTC
Statistics
Matches: 186, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 186 1.00
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (187 bp):
TAGGCACAAATATGTTACTAAGTTAGAACTCTGAAGGACCAATCGGAATAAATGAAATGACTAAA
ATAGGCAAAATAAAGAATACACAGAATGGGAAATATATAAAAATGTTTAGAAAAAAAATAATTTA
TTCGAAAATAATAGCAATGAGAACTGATTTTAGACCGCCCCCCCAAAAAAATTCTAC
Found at i:22270164 original size:33 final size:33
Alignment explanation
Indices: 22270126--22270189 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
22270116 TAATCTAAAT
* * *
22270126 CCTAAACCCTAACCCGATCCTGAATCCCTAATC
1 CCTAAACCCTAACCCAACCCTGAACCCCTAATC
*
22270159 CCTAAACTCTAACCCAACCCTGAACCCCTAA
1 CCTAAACCCTAACCCAACCCTGAACCCCTAA
22270190 ACATTATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.33, C:0.44, G:0.05, T:0.19
Consensus pattern (33 bp):
CCTAAACCCTAACCCAACCCTGAACCCCTAATC
Found at i:22272981 original size:7 final size:7
Alignment explanation
Indices: 22272969--22273116 Score: 95
Period size: 7 Copynumber: 21.0 Consensus size: 7
22272959 ACTAGTTAAT
22272969 CTAAACC
1 CTAAACC
22272976 CTAAACC
1 CTAAACC
*
22272983 ATAAA-C
1 CTAAACC
*
22272989 TTAAACC
1 CTAAACC
*
22272996 CTAAAATC
1 CT-AAACC
*
22273004 ATAAACC
1 CTAAACC
* *
22273011 CTTAACG
1 CTAAACC
22273018 C-ATAACC
1 CTA-AACC
22273025 TCTAAACC
1 -CTAAACC
*
22273033 TTAAACC
1 CTAAACC
*
22273040 CT-AGCC
1 CTAAACC
*
22273046 TTTAAACC
1 -CTAAACC
*
22273054 ATAAACC
1 CTAAACC
*
22273061 ATAAACC
1 CTAAACC
*
22273068 ATAAACC
1 CTAAACC
22273075 CTAAACC
1 CTAAACC
*
22273082 GTAAACC
1 CTAAACC
*
22273089 ATAAACC
1 CTAAACC
22273096 CTAAACC
1 CTAAACC
* *
22273103 ATATACC
1 CTAAACC
22273110 CTAAACC
1 CTAAACC
22273117 AAAAGCTCTA
Statistics
Matches: 109, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
6 8 0.07
7 87 0.80
8 13 0.12
9 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:22273114 original size:21 final size:20
Alignment explanation
Indices: 22272970--22273116 Score: 106
Period size: 21 Copynumber: 7.3 Consensus size: 20
22272960 CTAGTTAATC
* *
22272970 TAAACCCTAAACCATAAACT
1 TAAACCCTAAACCATAACCA
22272990 TAAACCCTAAA--AT---CA
1 TAAACCCTAAACCATAACCA
* *
22273005 TAAACCCTTAACGCATAACCTC
1 TAAACCCTAAAC-CATAACC-A
* * * *
22273027 TAAACCTTAAACCCTAGCCTT
1 TAAACCCTAAACCATAACC-A
*
22273048 TAAACCATAAACCATAAACCA
1 TAAACCCTAAACCAT-AACCA
*
22273069 TAAACCCTAAACCGTAAACCA
1 TAAACCCTAAACCAT-AACCA
*
22273090 TAAACCCTAAACCATATACCC
1 TAAACCCTAAACCATA-ACCA
22273111 TAAACC
1 TAAACC
22273117 AAAAGCTCTA
Statistics
Matches: 102, Mismatches: 16, Indels: 17
0.76 0.12 0.13
Matches are distributed among these distances:
15 11 0.11
18 4 0.04
20 12 0.12
21 62 0.61
22 13 0.13
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.20
Consensus pattern (20 bp):
TAAACCCTAAACCATAACCA
Found at i:22273370 original size:22 final size:22
Alignment explanation
Indices: 22273342--22273385 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
22273332 TTAGAAAACG
*
22273342 CCGCTAAAAGCCCTGAGCATTA
1 CCGCTAAAAGCCATGAGCATTA
*
22273364 CCGCTAAAAGTCATGAGCATTA
1 CCGCTAAAAGCCATGAGCATTA
22273386 GCGGCGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.20
Consensus pattern (22 bp):
CCGCTAAAAGCCATGAGCATTA
Found at i:22273469 original size:41 final size:41
Alignment explanation
Indices: 22273377--22273659 Score: 383
Period size: 41 Copynumber: 6.9 Consensus size: 41
22273367 CTAAAAGTCA
* *
22273377 TGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAAGCCA
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCT-AAAGCCC
* ** *
22273419 TGAGCATTAGCGCCGCTTTCTTAAAAATGCCGCTAAAGCCC
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
** *
22273460 TGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAAGCCC
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* *
22273501 TAAGCATTAGCGGCACTTTCCCAAAAACGCCGCTAAAGCCC
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
*
22273542 TGAGCATTAGCGGCGC-TTCCCAAAAACGTCGCTAAAGCCC
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* * *
22273582 TTAGCATTAGCGGCAC-TTCGCCAAAAACGCTGCTAAAGCCC
1 TGAGCATTAGCGGCGCTTTC-CCAAAAACGCCGCTAAAGCCC
22273623 TGAGCATTAGCGGCGC-TTCGCCAAAAACGCCGCTAAA
1 TGAGCATTAGCGGCGCTTTC-CCAAAAACGCCGCTAAA
22273660 TCCCCAAAAA
Statistics
Matches: 216, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
40 40 0.19
41 147 0.68
42 29 0.13
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (41 bp):
TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
Found at i:22273606 original size:81 final size:82
Alignment explanation
Indices: 22273377--22273659 Score: 392
Period size: 81 Copynumber: 3.5 Consensus size: 82
22273367 CTAAAAGTCA
* * * * * **
22273377 TGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAAGCCATGAGCATTAGCGCCGCTTTCTTA
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCT-AAAGCCCTAAGCATTAGCGGCACTTTCCCA
*
22273442 AAAATGCCGCTAAAGCCC
65 AAAACGCCGCTAAAGCCC
** *
22273460 TGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAAGCCCTAAGCATTAGCGGCACTTTCCCAA
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCACTTTCCCAA
22273525 AAACGCCGCTAAAGCCC
66 AAACGCCGCTAAAGCCC
* *
22273542 TGAGCATTAGCGGCGC-TTCCCAAAAACGTCGCTAAAGCCCTTAGCATTAGCGGCAC-TTCGCCA
1 TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCACTTTC-CCA
*
22273605 AAAACGCTGCTAAAGCCC
65 AAAACGCCGCTAAAGCCC
22273623 TGAGCATTAGCGGCGC-TTCGCCAAAAACGCCGCTAAA
1 TGAGCATTAGCGGCGCTTTC-CCAAAAACGCCGCTAAA
22273660 TCCCCAAAAA
Statistics
Matches: 180, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 3 0.02
81 74 0.41
82 73 0.41
83 30 0.17
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (82 bp):
TGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCACTTTCCCAA
AAACGCCGCTAAAGCCC
Found at i:22273608 original size:122 final size:123
Alignment explanation
Indices: 22273379--22273659 Score: 397
Period size: 122 Copynumber: 2.3 Consensus size: 123
22273369 AAAAGTCATG
* **
22273379 AGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAAGCCATGAGCATTAGCGCCGCTTTCTTAAA
1 AGCATTAGCGGCGCTTTCCCAAAAACGCCGCT-AAAGCCATGAGCATTAGCGCCGCTTTCCCAAA
* * **
22273444 AATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAAGCCCTA
65 AACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTCCCAAAAACGCTGCTAAAGCCCTA
* * *
22273503 AGCATTAGCGGCACTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCCCAAAA
1 AGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCATGAGCATTAGCGCCGCTTTCCCAAAA
* * *
22273567 ACGTCGCTAAAGCCCTTAGCATTAGCGGCAC-TTCGCCAAAAACGCTGCTAAAGCCCTG
66 ACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTC-CCAAAAACGCTGCTAAAGCCCTA
22273625 AGCATTAGCGGCGC-TTCGCCAAAAACGCCGCTAAA
1 AGCATTAGCGGCGCTTTC-CCAAAAACGCCGCTAAA
22273660 TCCCCAAAAA
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
121 6 0.04
122 84 0.60
123 21 0.15
124 30 0.21
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (123 bp):
AGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCATGAGCATTAGCGCCGCTTTCCCAAAA
ACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTTCCCAAAAACGCTGCTAAAGCCCTA
Found at i:22280582 original size:30 final size:30
Alignment explanation
Indices: 22280548--22280612 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
22280538 AGATAGTAGC
22280548 AACTTGAGTAAATAAACTTATTCCACCTCT
1 AACTTGAGTAAATAAACTTATTCCACCTCT
22280578 AACTTGAGTAAATAAACTTATTCCACCTCT
1 AACTTGAGTAAATAAACTTATTCCACCTCT
*
22280608 GACTT
1 AACTT
22280613 TCATCATTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (30 bp):
AACTTGAGTAAATAAACTTATTCCACCTCT
Found at i:22292733 original size:21 final size:23
Alignment explanation
Indices: 22292678--22292734 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
22292668 GTACTTCAAA
22292678 TTTGTGAGATTATAATTGAATAATC
1 TTTGTGAGATTATAATT--ATAATC
* *
22292703 ATTG-GCGATTATAATT-TAAT-
1 TTTGTGAGATTATAATTATAATC
22292723 TTTGTGAGATTA
1 TTTGTGAGATTA
22292735 AGCTTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.11
21 10 0.37
24 11 0.41
25 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.46
Consensus pattern (23 bp):
TTTGTGAGATTATAATTATAATC
Found at i:22299075 original size:10 final size:10
Alignment explanation
Indices: 22299046--22299104 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
22299036 GTCCACGTAT
22299046 AATTTATAAAA
1 AATTTA-AAAA
*
22299057 AATAGTAAAAA
1 AAT-TTAAAAA
22299068 AATTTAAAAA
1 AATTTAAAAA
22299078 AA-TTAATAAA
1 AATTTAA-AAA
*
22299088 AACTTTTAAAA
1 AA-TTTAAAAA
22299099 AATTTA
1 AATTTA
22299105 TTCATGTTAG
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 4 0.10
10 16 0.40
11 15 0.38
12 5 0.12
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:22299079 original size:21 final size:22
Alignment explanation
Indices: 22299046--22299100 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
22299036 GTCCACGTAT
*
22299046 AATTTATAAAAAA-TAGTAAAAA
1 AATTTA-AAAAAATTAATAAAAA
22299068 AATTTAAAAAAATTAATAAAAA
1 AATTTAAAAAAATTAATAAAAA
**
22299090 CTTTTAAAAAA
1 AATTTAAAAAA
22299101 TTTATTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
AATTTAAAAAAATTAATAAAAA
Found at i:22299101 original size:21 final size:19
Alignment explanation
Indices: 22299046--22299102 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 19
22299036 GTCCACGTAT
22299046 AATTTATAAAAAATAGTAAAAA
1 AATTT-TAAAAAAT--TAAAAA
*
22299068 AATTTAAAAAAATTAATAAA
1 AATTTTAAAAAATTAA-AAA
22299088 AACTTTTAAAAAATT
1 AA-TTTTAAAAAATT
22299103 TATTCATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 3 0.10
20 5 0.16
21 18 0.58
22 5 0.16
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AATTTTAAAAAATTAAAAA
Found at i:22300075 original size:21 final size:21
Alignment explanation
Indices: 22300045--22300085 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22300035 TTCGGGCTTC
*
22300045 TACTCAGCCTGGTTGATGGAA
1 TACTCAGCCTGATTGATGGAA
*
22300066 TACTCGGCCTGATTGATGGA
1 TACTCAGCCTGATTGATGGA
22300086 CAAGTCTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (21 bp):
TACTCAGCCTGATTGATGGAA
Found at i:22303362 original size:20 final size:20
Alignment explanation
Indices: 22303337--22303377 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22303327 TTAAAAGTCC
22303337 AAAAAATATATATATTTAAT
1 AAAAAATATATATATTTAAT
22303357 AAAAAATATATATATTTAAT
1 AAAAAATATATATATTTAAT
22303377 A
1 A
22303378 TATAATTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAAATATATATATTTAAT
Found at i:22312115 original size:24 final size:25
Alignment explanation
Indices: 22312083--22312129 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
22312073 AAATCAAACT
22312083 TAATCACTTTAA-TATTAAATTAATA
1 TAATCAC-TTAAGTATTAAATTAATA
*
22312108 TAAT-ACTTAAGTATTAGATTAA
1 TAATCACTTAAGTATTAAATTAA
22312130 ATTTAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
24 12 0.60
25 4 0.20
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (25 bp):
TAATCACTTAAGTATTAAATTAATA
Found at i:22314217 original size:19 final size:21
Alignment explanation
Indices: 22314195--22314240 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
22314185 TAATTAAAAC
22314195 AACTAAATA-A-GATTAATTA
1 AACTAAATACATGATTAATTA
*
22314214 AACTATATACATGATTAATTA
1 AACTAAATACATGATTAATTA
*
22314235 AGCTAA
1 AACTAA
22314241 TCATTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 8 0.36
20 1 0.05
21 13 0.59
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.33
Consensus pattern (21 bp):
AACTAAATACATGATTAATTA
Found at i:22334407 original size:24 final size:24
Alignment explanation
Indices: 22334380--22334426 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
22334370 ATTGAAATAG
22334380 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
22334404 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
22334427 GATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:22334691 original size:40 final size:40
Alignment explanation
Indices: 22334646--22334722 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
22334636 AGGTACCAAT
** *
22334646 TTACTTCGGTTTAACCAATGAGACACTGGGTGTCAAATTA
1 TTACTTCGAATTAACCAATGAGACACTGGGTGCCAAATTA
* * *
22334686 TTACTTTGAATTATCCAATGAGGCACTGGGTGCCAAA
1 TTACTTCGAATTAACCAATGAGACACTGGGTGCCAAA
22334723 CTAGTGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (40 bp):
TTACTTCGAATTAACCAATGAGACACTGGGTGCCAAATTA
Found at i:22338314 original size:14 final size:14
Alignment explanation
Indices: 22338295--22338325 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22338285 AGGAGGACTC
*
22338295 AAAATATCAAAATT
1 AAAATATAAAAATT
22338309 AAAATATAAAAATT
1 AAAATATAAAAATT
22338323 AAA
1 AAA
22338326 TTTGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:22339229 original size:180 final size:180
Alignment explanation
Indices: 22338927--22339990 Score: 2092
Period size: 180 Copynumber: 5.9 Consensus size: 180
22338917 AAAAAATCAA
* * *
22338927 TATATGCATAATTCGAGCCGAATGTGATTTTGGATAGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22338992 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
22339057 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
22339107 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22339172 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
22339237 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
22339287 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22339352 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
22339417 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
22339467 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22339532 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
22339597 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
22339647 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22339712 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
22339777 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
22339827 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
1 TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
22339892 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
66 ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
*
22339957 ATTATATTCTTTACTTGTTATCCTAATTTTGTAT
131 ATTATCTTCTTTACTTGTTATCCTAATTTTGTAT
22339991 AATATCCAAT
Statistics
Matches: 880, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 880 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (180 bp):
TATATGCACAATTCGAGCCGAATGTGATTTTAGATGGGATGATAACATGAAAACGATCACATGTG
ATAAATCGGCATATGATACGACAGTGATGATAATATATTTATATATATGTTAAATATATCTCAGC
ATTATCTTCTTTACTTGTTATCCTAATTTTGTATGTGATAAATAGCAAAT
Found at i:22340578 original size:46 final size:46
Alignment explanation
Indices: 22340528--22340632 Score: 165
Period size: 46 Copynumber: 2.3 Consensus size: 46
22340518 ACCAATTATA
* **
22340528 TGGTGTAATACTAGTTATGCACTTGGACGATATTGTAGTTAACATG
1 TGGTGTACTACTAGTTATGCACTTGGAAAATATTGTAGTTAACATG
*
22340574 TGGTGTACTACTAGTTATGCACTTGGAAAATATTGTAGTTATCATG
1 TGGTGTACTACTAGTTATGCACTTGGAAAATATTGTAGTTAACATG
*
22340620 CGGTGTACTACTA
1 TGGTGTACTACTA
22340633 ATTTGTAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (46 bp):
TGGTGTACTACTAGTTATGCACTTGGAAAATATTGTAGTTAACATG
Found at i:22342860 original size:98 final size:98
Alignment explanation
Indices: 22342691--22342941 Score: 457
Period size: 98 Copynumber: 2.6 Consensus size: 98
22342681 ATACAATAAA
*
22342691 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
22342756 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
22342789 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCATGATC
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
* *
22342854 CCTTTAGAATCCTAAACTTGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
*
22342887 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACACAATACGTTA
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTA
22342942 NNNNNNNNNN
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 148 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:22345584 original size:106 final size:106
Alignment explanation
Indices: 22345448--22345648 Score: 375
Period size: 106 Copynumber: 1.9 Consensus size: 106
22345438 AAAATTTTTC
22345448 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
22345513 TTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTT
66 TTCTCGTTCGACCAAACAGCCAAATATCCTTTTTAAACTTT
*
22345554 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
22345619 TTCTCGTTCGACTAAACAGCCAAATATCCT
66 TTCTCGTTCGACCAAACAGCCAAATATCCT
22345649 CTTAAAGCTT
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 92 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (106 bp):
TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCGACCAAACAGCCAAATATCCTTTTTAAACTTT
Found at i:22351342 original size:25 final size:25
Alignment explanation
Indices: 22351296--22351343 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
22351286 ACCTTCCTAA
* * *
22351296 TGATGTTGAAGGTGAAGCTTTGGAG
1 TGATGATGAAGCTGAAACTTTGGAG
*
22351321 TGATGATGAAGCTGAAATTTTGG
1 TGATGATGAAGCTGAAACTTTGG
22351344 TTGTCCAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.04, G:0.35, T:0.33
Consensus pattern (25 bp):
TGATGATGAAGCTGAAACTTTGGAG
Found at i:22352362 original size:19 final size:19
Alignment explanation
Indices: 22352319--22352362 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
22352309 TAGTTAGTTA
* * *
22352319 ATTTTTTTTATATATTTTT
1 ATTTTTTTTATAAATTATC
*
22352338 AGTTTTTTTATAAATTATC
1 ATTTTTTTTATAAATTATC
22352357 ATTTTT
1 ATTTTT
22352363 ATGTTATTAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
ATTTTTTTTATAAATTATC
Found at i:22352682 original size:17 final size:18
Alignment explanation
Indices: 22352647--22352691 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 18
22352637 ATGAAAAAAA
*
22352647 ATATATTTTTTATTAATTT
1 ATATA-TTTTTAATAATTT
22352666 ATATATTTTTAAT-ATTT
1 ATATATTTTTAATAATTT
22352683 -T-TATTTTTA
1 ATATATTTTTA
22352692 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 1 0.04
17 4 0.16
18 7 0.28
19 5 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATATATTTTTAATAATTT
Found at i:22352709 original size:5 final size:6
Alignment explanation
Indices: 22352678--22352707 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
22352668 ATATTTTTAA
22352678 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
22352708 ATGTCTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:22354732 original size:18 final size:17
Alignment explanation
Indices: 22354699--22354737 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
22354689 TTGTATAAAT
22354699 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
22354717 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
22354734 TGTG
1 TGTG
22354738 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:22354990 original size:23 final size:23
Alignment explanation
Indices: 22354964--22355037 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
22354954 GTGTTATTGA
22354964 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
22354987 TCAGTGGTAGCTTTGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
22355009 CCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
22355032 TCAGTG
1 TCAGTG
22355038 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
22 20 0.44
23 25 0.56
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:22355016 original size:22 final size:22
Alignment explanation
Indices: 22354965--22355030 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
22354955 TGTTATTGAT
*
22354965 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACA-TC
*
22354988 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATC
22355010 CAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACAT
22355031 ATCAGTGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
CAGTGGTAGCTTCGGCTACATC
Found at i:22359210 original size:23 final size:23
Alignment explanation
Indices: 22359180--22359231 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
22359170 AACCGCATGT
22359180 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATA
22359203 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATA
22359226 TCAGTG
1 TCAGTG
22359232 TGGCACTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATA
Found at i:22370751 original size:25 final size:25
Alignment explanation
Indices: 22370717--22370766 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22370707 AATCTATGTG
22370717 ACATCGATCTTTTTAACAATTTATA
1 ACATCGATCTTTTTAACAATTTATA
22370742 ACATCGATCTTTTTAACAATTTATA
1 ACATCGATCTTTTTAACAATTTATA
22370767 TTCTTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.04, T:0.44
Consensus pattern (25 bp):
ACATCGATCTTTTTAACAATTTATA
Found at i:22372265 original size:57 final size:57
Alignment explanation
Indices: 22372177--22372289 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
22372167 CTTTGGTAGA
* * * *
22372177 TACGAAGGTAGATCTTCTAGCTGAACAAAACCAAACCTTGACAGCCTCTACCAATCT
1 TACGAAGGTAGACCTTCTAACTGAACAAAACCAAACCATGACAACCTCTACCAATCT
* *
22372234 TACGAATGTAGACCTTCTAACTGAACAAAACCAAACCATGATAACCTCTACCAATC
1 TACGAAGGTAGACCTTCTAACTGAACAAAACCAAACCATGACAACCTCTACCAATC
22372290 GTTCTTATTC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.22
Consensus pattern (57 bp):
TACGAAGGTAGACCTTCTAACTGAACAAAACCAAACCATGACAACCTCTACCAATCT
Found at i:22379576 original size:149 final size:151
Alignment explanation
Indices: 22379315--22379589 Score: 385
Period size: 149 Copynumber: 1.8 Consensus size: 151
22379305 ATTTCCATGC
* * * * *
22379315 TGACTCGTTTTCTCTAAGTTTTCTGTCACTTGTGGTTTATCGAGTCTATGTGGGAACTTGATTTT
1 TGACTCGATTTCTCTAAGTTTTCTG-CACTTGTGGTATATCAAATCTATATGGGAACTTGATTTT
* * * *
22379380 GTTTGGGTTCCATTGCATATGTTATTTTAGGTCAGAGATGTTTCCATACCCATGAGAGCAAGGGA
65 GTCTGGGTTCCATTGCATATGTTATTTTAGGTCAAAGATGCTTCCATACCCATAAGAGCAAGGGA
22379445 CTATATGCTACCATTTTCGCGG
130 CTATATGCTACCATTTTCGCGG
* *
22379467 TGACTCGATTTCTCTAAGTTTTC-G-ATTTGTGGTATATCAAATCTCTATGGGAA-TTCGATTTT
1 TGACTCGATTTCTCTAAGTTTTCTGCACTTGTGGTATATCAAATCTATATGGGAACTT-GATTTT
* * *
22379529 GTCTGGGTTCTATTGCATGTGTTATTTTAGGTCAAAGATGCTTCCATACCTATAAGAGCAA
65 GTCTGGGTTCCATTGCATATGTTATTTTAGGTCAAAGATGCTTCCATACCCATAAGAGCAA
22379590 TGAATTGTAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
148 2 0.02
149 83 0.77
151 1 0.01
152 22 0.20
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.40
Consensus pattern (151 bp):
TGACTCGATTTCTCTAAGTTTTCTGCACTTGTGGTATATCAAATCTATATGGGAACTTGATTTTG
TCTGGGTTCCATTGCATATGTTATTTTAGGTCAAAGATGCTTCCATACCCATAAGAGCAAGGGAC
TATATGCTACCATTTTCGCGG
Found at i:22381028 original size:6 final size:6
Alignment explanation
Indices: 22381017--22381042 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22381007 CTTCTGTTAA
22381017 ATTTAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATTTAT ATTTAT ATTTAT AT
22381043 ATTGATGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:22406099 original size:43 final size:43
Alignment explanation
Indices: 22406039--22406124 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
22406029 GAAAGAGGTC
* * *
22406039 AAAAACATCACCTAAACCCAACTCTAATTATTATATTTATTTA
1 AAAAAAATCACCTAAACCCAACTCTAATTAATAAATTTATTTA
**
22406082 AAAAAAATCACCTAAACCCATTTCTAATTAATAAATTTATTTA
1 AAAAAAATCACCTAAACCCAACTCTAATTAATAAATTTATTTA
22406125 TCTAAGTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.35
Consensus pattern (43 bp):
AAAAAAATCACCTAAACCCAACTCTAATTAATAAATTTATTTA
Found at i:22406732 original size:15 final size:15
Alignment explanation
Indices: 22406712--22406742 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22406702 CTGTATCAGT
22406712 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
22406727 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
22406742 A
1 A
22406743 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:22411152 original size:15 final size:15
Alignment explanation
Indices: 22411126--22411161 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
22411116 TTGCATTTTA
22411126 TATAAA-AAAAGATG
1 TATAAATAAAAGATG
22411140 TATAAATAAAAGATG
1 TATAAATAAAAGATG
22411155 TATAAAT
1 TATAAAT
22411162 TAAGTAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.28
Consensus pattern (15 bp):
TATAAATAAAAGATG
Found at i:22421694 original size:32 final size:33
Alignment explanation
Indices: 22421640--22421712 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 33
22421630 AATGATTTAC
* *
22421640 TTTTCTAGTGTTTAGATGAA-TTTATGTAAAATA
1 TTTTCTAGTGTTTAGATAAATTTTCTG-AAAATA
22421673 TTTT-TAGTTGTTT-GATAAATTTTCTGAAAATA
1 TTTTCTAG-TGTTTAGATAAATTTTCTGAAAATA
22421705 TTTTCTAG
1 TTTTCTAG
22421713 AAAAACTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
32 18 0.51
33 17 0.49
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.52
Consensus pattern (33 bp):
TTTTCTAGTGTTTAGATAAATTTTCTGAAAATA
Found at i:22421751 original size:20 final size:20
Alignment explanation
Indices: 22421728--22421767 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22421718 CTATTTTTAC
22421728 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
22421748 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
22421768 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:22421772 original size:16 final size:18
Alignment explanation
Indices: 22421723--22421767 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
22421713 AAAAACTATT
* *
22421723 TTTACATATATTAATAAA
1 TTTATATATTTTAATAAA
22421741 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
22421761 TTTATAT
1 TTTATAT
22421768 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:22421836 original size:56 final size:56
Alignment explanation
Indices: 22421720--22421838 Score: 134
Period size: 57 Copynumber: 2.1 Consensus size: 56
22421710 TAGAAAAACT
* * * * *
22421720 ATTTTTACATATATTAATAAATTTATATATATATTAATAAATTTATATTTTAAATT
1 ATTTTTACATATATTAATAAATTTATATATAAATAAATAAACTTAAATTTTAAATA
* * *
22421776 ATTTTTACATATATTACA-ATAATTTATTTATAAATAAATTAACTTAAATTTT-TATA
1 ATTTTTACATATATTA-ATA-AATTTATATATAAATAAATAAACTTAAATTTTAAATA
22421832 ATTTTTA
1 ATTTTTA
22421839 GACATGTTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
56 26 0.49
57 27 0.51
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (56 bp):
ATTTTTACATATATTAATAAATTTATATATAAATAAATAAACTTAAATTTTAAATA
Found at i:22422719 original size:16 final size:16
Alignment explanation
Indices: 22422695--22422727 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22422685 AGAATGTTGA
*
22422695 ATGGTAATTGACAAAT
1 ATGGGAATTGACAAAT
22422711 ATGGGAATTGACAAAT
1 ATGGGAATTGACAAAT
22422727 A
1 A
22422728 GCATTTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (16 bp):
ATGGGAATTGACAAAT
Found at i:22423274 original size:92 final size:93
Alignment explanation
Indices: 22423166--22423350 Score: 327
Period size: 92 Copynumber: 2.0 Consensus size: 93
22423156 GAGCTGCCAG
*
22423166 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGTTCAAT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
*
22423231 CCTAAC-AAAGTTAATAAAGGCGAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
*
22423258 GAAATAATAGAAAAAAGATGAATCAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
*
22423323 CCTAACAAAAGTAAATAAAGGCTAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
22423351 AAGGATTGCT
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 69 0.78
93 19 0.22
ACGTcount: A:0.56, C:0.15, G:0.11, T:0.18
Consensus pattern (93 bp):
GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAGCTCAAT
CCTAACAAAAGTAAATAAAGGCGAAGAA
Found at i:22428117 original size:6 final size:6
Alignment explanation
Indices: 22428108--22428145 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
22428098 TTATTTTTAT
22428108 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TT
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TT
22428146 TATTATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TTAATA
Found at i:22428124 original size:31 final size:27
Alignment explanation
Indices: 22428069--22428126 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 27
22428059 TGGGGTGGGG
22428069 AGTTTTTTTTTTAATTTATATTAATAT
1 AGTTTTTTTTTTAATTTATATTAATAT
22428096 AGTTATTTTTATTTAATATTAATATTAATAT
1 AGTT-TTTTT-TTTAAT-TT-ATATTAATAT
22428127 TAATATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 4 0.15
28 5 0.19
29 6 0.22
30 2 0.07
31 10 0.37
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (27 bp):
AGTTTTTTTTTTAATTTATATTAATAT
Done.