Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 78 of 141
Found at i:22428127 original size:25 final size:25
Alignment explanation
Indices: 22428076--22428161 Score: 88
Period size: 25 Copynumber: 3.4 Consensus size: 25
22428066 GGGAGTTTTT
22428076 TTTTTAATTT-ATATTAATA-TAGTTA
1 TTTTT-ATTTAATATTAATATTA-TTA
*
22428101 TTTTTATTTAATATTAATATTAATA
1 TTTTTATTTAATATTAATATTATTA
**
22428126 TTAATA-TTAATATTAATATTTATTA
1 TTTTTATTTAATATTAATA-TTATTA
22428151 TTTATTATTTA
1 TTT-TTATTTA
22428162 TTATATTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
24 16 0.32
25 27 0.54
26 4 0.08
27 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (25 bp):
TTTTTATTTAATATTAATATTATTA
Found at i:22428420 original size:54 final size:54
Alignment explanation
Indices: 22428362--22428471 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
22428352 AAAAGTTTTA
22428362 TGATTTTAATTGGGTGACCAAAATGGTCGAGATATGTAAAATGGATGCTTAAAT
1 TGATTTTAATTGGGTGACCAAAATGGTCGAGATATGTAAAATGGATGCTTAAAT
22428416 TGATTTTAATTGGGTGACCAAAATGGTCGAGATATGTAAAATGGATGCTTAAAT
1 TGATTTTAATTGGGTGACCAAAATGGTCGAGATATGTAAAATGGATGCTTAAAT
22428470 TG
1 TG
22428472 CAACCTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.34
Consensus pattern (54 bp):
TGATTTTAATTGGGTGACCAAAATGGTCGAGATATGTAAAATGGATGCTTAAAT
Found at i:22430304 original size:47 final size:47
Alignment explanation
Indices: 22430247--22430340 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
22430237 CCTAATGTAT
* *
22430247 AAAGTTTGATTAGGTGAG-CTGAATCAGGTAGAGATATTGTATGTAAC
1 AAAGCTTGATTAGGTG-GTCTGAATCAGGTAAAGATATTGTATGTAAC
*
22430294 AAAGCTTGATTAGGTGGTTTGAATCAGGTAAAGATATTGTATGTAAC
1 AAAGCTTGATTAGGTGGTCTGAATCAGGTAAAGATATTGTATGTAAC
22430341 TGTATTGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.02
47 42 0.98
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (47 bp):
AAAGCTTGATTAGGTGGTCTGAATCAGGTAAAGATATTGTATGTAAC
Found at i:22433503 original size:26 final size:26
Alignment explanation
Indices: 22433473--22433524 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22433463 TTTTATTTTA
*
22433473 TTTTTGTATTT-TGTAACATATATTTG
1 TTTTTATATTTCTG-AACATATATTTG
*
22433499 TTTTTATATTTCTGAATATATATTTG
1 TTTTTATATTTCTGAACATATATTTG
22433525 AAATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.04, G:0.10, T:0.62
Consensus pattern (26 bp):
TTTTTATATTTCTGAACATATATTTG
Found at i:22433569 original size:24 final size:24
Alignment explanation
Indices: 22433515--22433571 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
22433505 TATTTCTGAA
* *
22433515 TATATATTTGAAATTTTTATATATT
1 TATA-ATTTGAAATTTTGATATAAT
*
22433540 TTTAATTTGAAAGTTTTGA-ATAAT
1 TATAATTTGAAA-TTTTGATATAAT
22433564 TATAATTT
1 TATAATTT
22433572 ATTTTGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (24 bp):
TATAATTTGAAATTTTGATATAAT
Found at i:22440805 original size:47 final size:47
Alignment explanation
Indices: 22440749--22440848 Score: 159
Period size: 47 Copynumber: 2.1 Consensus size: 47
22440739 TAGAGACCTA
*
22440749 ATGT-ACAAAGCTTGATTAGGTGAG-CTGAATCAGGTAGAGATATTGT
1 ATGTAACAAAGCTTGATTAGGTG-GTCTGAATCAGGTAAAGATATTGT
*
22440795 ATGTAACAAAGCTTGATTAGGTGGTTTGAATCAGGTAAAGATATTGT
1 ATGTAACAAAGCTTGATTAGGTGGTCTGAATCAGGTAAAGATATTGT
22440842 ATGTAAC
1 ATGTAAC
22440849 TGTATTGAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
46 5 0.10
47 45 0.90
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (47 bp):
ATGTAACAAAGCTTGATTAGGTGGTCTGAATCAGGTAAAGATATTGT
Found at i:22453804 original size:14 final size:14
Alignment explanation
Indices: 22453787--22453814 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22453777 TATGACATTT
22453787 TTGTTTTGACCATG
1 TTGTTTTGACCATG
22453801 TTGTTTTGACCATG
1 TTGTTTTGACCATG
22453815 ACACTCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (14 bp):
TTGTTTTGACCATG
Found at i:22455976 original size:61 final size:61
Alignment explanation
Indices: 22455881--22456002 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
22455871 TTTATCTGTT
22455881 TTACTTAGTCTTATAGAAGGGAAATTGAGTTGTAATCTTTTAAGTGAATAGCCTACTCCGG
1 TTACTTAGTCTTATAGAAGGGAAATTGAGTTGTAATCTTTTAAGTGAATAGCCTACTCCGG
22455942 TTACTTAGTCTTATAGAAGGGAAATTGAGTTGTAATCTTTTAAGTGAATAGCCTACTCCGG
1 TTACTTAGTCTTATAGAAGGGAAATTGAGTTGTAATCTTTTAAGTGAATAGCCTACTCCGG
22456003 GTATATCTCA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (61 bp):
TTACTTAGTCTTATAGAAGGGAAATTGAGTTGTAATCTTTTAAGTGAATAGCCTACTCCGG
Found at i:22456214 original size:14 final size:13
Alignment explanation
Indices: 22456195--22456234 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
22456185 GGGGTTTTTA
22456195 AAAAAATTATATAT
1 AAAAAATTA-ATAT
22456209 AAAAAA-TAATAT
1 AAAAAATTAATAT
22456221 AAAAAATTTAATAT
1 AAAAAA-TTAATAT
22456235 GCACGGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 12 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAAAATTAATAT
Found at i:22456220 original size:12 final size:13
Alignment explanation
Indices: 22456195--22456227 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
22456185 GGGGTTTTTA
22456195 AAAAAATTATATAT
1 AAAAAA-TATATAT
22456209 AAAAAATA-ATAT
1 AAAAAATATATAT
22456221 AAAAAAT
1 AAAAAAT
22456228 TTAATATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 2 0.11
14 6 0.32
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAAAATATATAT
Found at i:22459912 original size:14 final size:15
Alignment explanation
Indices: 22459895--22459933 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
22459885 TCACATACCT
22459895 TAAACCCTAAAT-CC
1 TAAACCCTAAATGCC
*
22459909 TAAACCCTAAATGTC
1 TAAACCCTAAATGCC
22459924 TAAACCCTAA
1 TAAACCCTAA
22459934 GTGGGGTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.44, C:0.31, G:0.03, T:0.23
Consensus pattern (15 bp):
TAAACCCTAAATGCC
Found at i:22463026 original size:26 final size:26
Alignment explanation
Indices: 22462990--22463071 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
22462980 AGGTGGTGCG
22462990 TATTAGTCAGTCCATGGATCAATGCA
1 TATTAGTCAGTCCATGGATCAATGCA
22463016 TATTAGTCAGTCCATGGATCAATGCA
1 TATTAGTCAGTCCATGGATCAATGCA
*
22463042 TATTAGTTAGTCCATGGATCAATGCA
1 TATTAGTCAGTCCATGGATCAATGCA
22463068 TATT
1 TATT
22463072 CGGTTTTCTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (26 bp):
TATTAGTCAGTCCATGGATCAATGCA
Found at i:22467200 original size:18 final size:19
Alignment explanation
Indices: 22467164--22467202 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
22467154 CTTTTCTCCA
22467164 TTTTTCTACTATTTTTCTT
1 TTTTTCTACTATTTTTCTT
22467183 TTTTTCT-CT-TTTTCTCTT
1 TTTTTCTACTATTTT-TCTT
22467201 TT
1 TT
22467203 CCTCCTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 8 0.42
19 7 0.37
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTCTACTATTTTTCTT
Found at i:22470492 original size:2 final size:2
Alignment explanation
Indices: 22470480--22470512 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
22470470 AAGCCACTCA
*
22470480 TC TC GC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22470513 TGGGTGGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.03, T:0.48
Consensus pattern (2 bp):
TC
Found at i:22485983 original size:34 final size:35
Alignment explanation
Indices: 22485939--22486005 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
22485929 NNNNNNNNNN
* *
22485939 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
22485973 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTT
22486006 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:22485992 original size:20 final size:20
Alignment explanation
Indices: 22485954--22485993 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22485944 CGTAAAATGA
**
22485954 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
22485974 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
22485994 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:22499226 original size:43 final size:43
Alignment explanation
Indices: 22499162--22499257 Score: 174
Period size: 43 Copynumber: 2.2 Consensus size: 43
22499152 ATTCCGGCTG
* *
22499162 GGGATATCCCATTCTATGGATATCCCGGTTCAGTATTACCCCA
1 GGGATATCCCATTCCAAGGATATCCCGGTTCAGTATTACCCCA
22499205 GGGATATCCCATTCCAAGGATATCCCGGTTCAGTATTACCCCA
1 GGGATATCCCATTCCAAGGATATCCCGGTTCAGTATTACCCCA
22499248 GGGATATCCC
1 GGGATATCCC
22499258 TCGGATATCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (43 bp):
GGGATATCCCATTCCAAGGATATCCCGGTTCAGTATTACCCCA
Found at i:22499313 original size:22 final size:21
Alignment explanation
Indices: 22499266--22499403 Score: 138
Period size: 21 Copynumber: 6.5 Consensus size: 21
22499256 CCTCGGATAT
**
22499266 CCCGGTTCCGGTTTTCTGGGGA-
1 CCCGGTT-CGGTTTT-TTAGGAC
*
22499288 CCCGGTTCGATTTTTTAAGGAC
1 CCCGGTTCGGTTTTTT-AGGAC
* *
22499310 CCCGGTTCGGGTTTTTATGAC
1 CCCGGTTCGGTTTTTTAGGAC
*
22499331 CCCGGTTCGGTTTTTTTAGTAC
1 CCCGGTTCGG-TTTTTTAGGAC
*
22499353 CCCGGTTCGGTTTTTT--TAC
1 CCCGGTTCGGTTTTTTAGGAC
* *
22499372 CCCGGTTCGATTTTTTATGAC
1 CCCGGTTCGGTTTTTTAGGAC
22499393 CCCGGTTCGGT
1 CCCGGTTCGGT
22499404 GTGAGTTGGT
Statistics
Matches: 99, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
19 18 0.18
20 1 0.01
21 41 0.41
22 39 0.39
ACGTcount: A:0.09, C:0.25, G:0.26, T:0.39
Consensus pattern (21 bp):
CCCGGTTCGGTTTTTTAGGAC
Found at i:22502175 original size:23 final size:23
Alignment explanation
Indices: 22502145--22502191 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
22502135 TTTCATTTTA
22502145 GGCTTATATAATGCTTAGATTTG
1 GGCTTATATAATGCTTAGATTTG
*
22502168 GGCTTATATTATGCTTAGATTTG
1 GGCTTATATAATGCTTAGATTTG
22502191 G
1 G
22502192 TTTCTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (23 bp):
GGCTTATATAATGCTTAGATTTG
Found at i:22502988 original size:76 final size:76
Alignment explanation
Indices: 22502862--22503007 Score: 292
Period size: 76 Copynumber: 1.9 Consensus size: 76
22502852 GCATGAAAAA
22502862 AAGTTTGGATATTGGTTGCTCTTGGCTCTAAACGGTATCTGCTCCTTAGTTGTCTTTATATTTGC
1 AAGTTTGGATATTGGTTGCTCTTGGCTCTAAACGGTATCTGCTCCTTAGTTGTCTTTATATTTGC
22502927 ATTGGGTTTTT
66 ATTGGGTTTTT
22502938 AAGTTTGGATATTGGTTGCTCTTGGCTCTAAACGGTATCTGCTCCTTAGTTGTCTTTATATTTGC
1 AAGTTTGGATATTGGTTGCTCTTGGCTCTAAACGGTATCTGCTCCTTAGTTGTCTTTATATTTGC
22503003 ATTGG
66 ATTGG
22503008 AATGTTGAGA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.16, C:0.15, G:0.23, T:0.46
Consensus pattern (76 bp):
AAGTTTGGATATTGGTTGCTCTTGGCTCTAAACGGTATCTGCTCCTTAGTTGTCTTTATATTTGC
ATTGGGTTTTT
Found at i:22506863 original size:14 final size:14
Alignment explanation
Indices: 22506844--22506873 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
22506834 GCTAAAGTGG
22506844 TAGAAAGTGCGTTC
1 TAGAAAGTGCGTTC
22506858 TAGAAAGTGCGTTC
1 TAGAAAGTGCGTTC
22506872 TA
1 TA
22506874 CAGGGTGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (14 bp):
TAGAAAGTGCGTTC
Found at i:22512658 original size:14 final size:14
Alignment explanation
Indices: 22512639--22512667 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22512629 AGCCCATCAT
22512639 TAATTAGAATTTGA
1 TAATTAGAATTTGA
22512653 TAATTAGAATTTGA
1 TAATTAGAATTTGA
22512667 T
1 T
22512668 TAGAAGAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (14 bp):
TAATTAGAATTTGA
Found at i:22515011 original size:28 final size:29
Alignment explanation
Indices: 22514963--22515017 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
22514953 TTATAATCTA
* **
22514963 AAATTAAATTAATAATTAATT-ATTTAAT
1 AAATAAAATTAATAAAAAATTAATTTAAT
22514991 AAATAAAATTAATAAAAAATTAATTTA
1 AAATAAAATTAATAAAAAATTAATTTA
22515018 CATATTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
AAATAAAATTAATAAAAAATTAATTTAAT
Found at i:22516195 original size:52 final size:52
Alignment explanation
Indices: 22516131--22516234 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
22516121 AAAGGGGTGA
22516131 AAGAGTGCGAGTCCAGCACAACATCGAATCATGTGGAGGAACCCTGTCGAGG
1 AAGAGTGCGAGTCCAGCACAACATCGAATCATGTGGAGGAACCCTGTCGAGG
*
22516183 AAGAGTGTGAGTCCAGCACAACATCGAATCATGTGGAGGAACCCTGTCGAGG
1 AAGAGTGCGAGTCCAGCACAACATCGAATCATGTGGAGGAACCCTGTCGAGG
22516235 GATTCTGGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (52 bp):
AAGAGTGCGAGTCCAGCACAACATCGAATCATGTGGAGGAACCCTGTCGAGG
Found at i:22518389 original size:60 final size:60
Alignment explanation
Indices: 22518269--22518415 Score: 163
Period size: 60 Copynumber: 2.5 Consensus size: 60
22518259 GTTTATACAT
*
22518269 TTTATCAATTTAATTTTAAATT-TAAAAATTCAATAAATTTAACCTCCAATATTTACAAAA
1 TTTATCAATTTAATTTT-AATTCTAAAAATTCAATAAATTTAACCTCCAACATTTACAAAA
* * * * ** ** *
22518329 TTTGT-TATTTAATTTTAATTCCAAAACATTCAATAATTTTAGTCTTGAACATTTATAAAA
1 TTTATCAATTTAATTTTAATTCTAAAA-ATTCAATAAATTTAACCTCCAACATTTACAAAA
*
22518389 TTTATCAATTTAATTATAATTCTAAAA
1 TTTATCAATTTAATTTTAATTCTAAAA
22518416 GTTAAAAAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
58 4 0.06
59 14 0.20
60 34 0.49
61 18 0.26
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (60 bp):
TTTATCAATTTAATTTTAATTCTAAAAATTCAATAAATTTAACCTCCAACATTTACAAAA
Found at i:22525498 original size:19 final size:20
Alignment explanation
Indices: 22525460--22525500 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22525450 TAAAAAAATT
* *
22525460 TATATTAAAATAATAGAAAC
1 TATATAAAAAAAATAGAAAC
22525480 TATATAAAAAAAATA-AAAC
1 TATATAAAAAAAATAGAAAC
22525499 TA
1 TA
22525501 ATTGGACTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (20 bp):
TATATAAAAAAAATAGAAAC
Found at i:22533881 original size:8 final size:9
Alignment explanation
Indices: 22533863--22533889 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22533853 TATATGTTTC
22533863 TTAATTTTT
1 TTAATTTTT
22533872 TTAATTTTT
1 TTAATTTTT
22533881 TTAATTTTT
1 TTAATTTTT
22533890 ACATTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTAATTTTT
Found at i:22534387 original size:20 final size:21
Alignment explanation
Indices: 22534352--22534392 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
22534342 ATTAATTTTA
*
22534352 TATTAATATACTATC-ATATT
1 TATTAATATACAATCAATATT
*
22534372 TATTAATATTCAATCAATATT
1 TATTAATATACAATCAATATT
22534393 AATGGTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTAATATACAATCAATATT
Found at i:22546500 original size:40 final size:39
Alignment explanation
Indices: 22546456--22546547 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 39
22546446 ACTATTTTCG
* *
22546456 GCACTAAGTGTGCG-ATTTGAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGAATTAG-AATAGCTTCAGCTAT-AATA
* * *
22546496 GCACTAAGTGTGCGAATTAGAATAGCTTCAGTTATGATG
1 GCACTAAGTGTGCGAATTAGAATAGCTTCAGCTATAATA
22546535 GCACTAAGTGTGC
1 GCACTAAGTGTGC
22546548 AATATTTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 15 0.33
40 27 0.59
41 4 0.09
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (39 bp):
GCACTAAGTGTGCGAATTAGAATAGCTTCAGCTATAATA
Found at i:22546666 original size:19 final size:19
Alignment explanation
Indices: 22546642--22546683 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
22546632 TCGAGCATTG
22546642 AAGTGATAATATAATAGTT
1 AAGTGATAATATAATAGTT
*
22546661 AAGTGATAATGTAATAGTT
1 AAGTGATAATATAATAGTT
22546680 AAGT
1 AAGT
22546684 ACGAGTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (19 bp):
AAGTGATAATATAATAGTT
Found at i:22547633 original size:55 final size:55
Alignment explanation
Indices: 22547539--22547741 Score: 275
Period size: 55 Copynumber: 3.7 Consensus size: 55
22547529 TTACATTTGT
* * *
22547539 AAGTCAGGCTTGACCACGGCCAAGGCACATGGGCGTGTGGCTAGCTGTGTGACCC
1 AAGTCAGGCTCGACCACGGCCAAGGCACACGGGCATGTGGCTAGCTGTGTGACCC
* * *
22547594 AAGTCAGGCTCGATCATGGCCAAGGCACACGGACATGTGGCTAGCTGTGTGACCC
1 AAGTCAGGCTCGACCACGGCCAAGGCACACGGGCATGTGGCTAGCTGTGTGACCC
* * * *
22547649 AATTCATTGC-CGACCACGGCCAAGGCACACGGGCGTGTGGCTAGTTGTGTGACCC
1 AAGTCA-GGCTCGACCACGGCCAAGGCACACGGGCATGTGGCTAGCTGTGTGACCC
*
22547704 AAGTCAGTG-TCGACCACGGCCAAGACACACGGGCATGT
1 AAGTCAG-GCTCGACCACGGCCAAGGCACACGGGCATGT
22547742 ATTGTGGCCG
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
55 126 0.98
56 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.18
Consensus pattern (55 bp):
AAGTCAGGCTCGACCACGGCCAAGGCACACGGGCATGTGGCTAGCTGTGTGACCC
Found at i:22553483 original size:40 final size:39
Alignment explanation
Indices: 22553439--22553531 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 39
22553429 ACTATGTTCG
**
22553439 GCACTAAGTGTGCGGTTTGAAATAGCTTCGGCTATAAAT
1 GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
* * **
22553478 AGCACTAAGTGTGTGAATTGGAATAGCTTCGGCTATATGT
1 -GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
22553518 GCCACTAAGTGTGC
1 G-CACTAAGTGTGC
22553532 AATATTGAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.02
40 44 0.98
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (39 bp):
GCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAAT
Found at i:22554616 original size:55 final size:55
Alignment explanation
Indices: 22554553--22554658 Score: 194
Period size: 55 Copynumber: 1.9 Consensus size: 55
22554543 GACCAAGGTC
22554553 AAGGCACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAATGCCGACCACAGCT
1 AAGGCACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAATGCCGACCACAGCT
* *
22554608 AAGGCACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAGTGTCGACCAC
1 AAGGCACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAATGCCGACCAC
22554659 GGCCAAGACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.23, C:0.30, G:0.32, T:0.15
Consensus pattern (55 bp):
AAGGCACACGGGCGTGTGGCTAGCCGTGTGACCCAAGTCAATGCCGACCACAGCT
Found at i:22558204 original size:17 final size:18
Alignment explanation
Indices: 22558182--22558215 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
22558172 TGTCCGCGAC
22558182 AAACGCGA-CGCGACCGA
1 AAACGCGACCGCGACCGA
22558199 AAACGCGACCGCGACCG
1 AAACGCGACCGCGACCG
22558216 CAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.38, G:0.29, T:0.00
Consensus pattern (18 bp):
AAACGCGACCGCGACCGA
Found at i:22567473 original size:2 final size:2
Alignment explanation
Indices: 22567460--22567496 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
22567450 ATCTAACAAT
*
22567460 AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
22567497 TATATATCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:22568414 original size:45 final size:45
Alignment explanation
Indices: 22568362--22568494 Score: 158
Period size: 45 Copynumber: 3.0 Consensus size: 45
22568352 GAATCTAATA
* * *
22568362 CGATGCCAATGTTCCAGACATGGTCTCACACGTAACCACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTCACACGAAAACACATATAT
* * *
22568407 CGATGCCAATGTCCCAGACGTGGTTTTACACGAAAACACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTCACACGAAAACACATATAT
* * * * * *
22568452 CGATGCCAACGTCCCTGACGTGGTCTTACTCGAAAATACATAT
1 CGATGCCAATGTCCCAGACATGGTCTCACACGAAAACACATAT
22568495 CAAAATCCTA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (45 bp):
CGATGCCAATGTCCCAGACATGGTCTCACACGAAAACACATATAT
Found at i:22572383 original size:19 final size:18
Alignment explanation
Indices: 22572348--22572382 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22572338 TTACACATTG
22572348 TGTAATTTGGTTGTTTTC
1 TGTAATTTGGTTGTTTTC
22572366 TGTAATTTTGGTT-TTTT
1 TGTAA-TTTGGTTGTTTT
22572383 TTTTGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.11, C:0.03, G:0.20, T:0.66
Consensus pattern (18 bp):
TGTAATTTGGTTGTTTTC
Found at i:22572465 original size:18 final size:18
Alignment explanation
Indices: 22572442--22572480 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22572432 TTATTATCTT
* *
22572442 AGAAAAGTCACAAAGAAA
1 AGAAAACTCACAAAAAAA
*
22572460 AGAAAACTTACAAAAAAA
1 AGAAAACTCACAAAAAAA
22572478 AGA
1 AGA
22572481 TCGAATTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.69, C:0.10, G:0.13, T:0.08
Consensus pattern (18 bp):
AGAAAACTCACAAAAAAA
Found at i:22582580 original size:22 final size:22
Alignment explanation
Indices: 22582552--22582604 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
22582542 CATATCCATC
* * *
22582552 ATCACCATCTGCATCAGTCTTA
1 ATCACCACCTACATCAGTCTCA
*
22582574 ATCACCACCTACATTAGTCTCA
1 ATCACCACCTACATCAGTCTCA
22582596 ATCACCACC
1 ATCACCACC
22582605 GAACGTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.38, G:0.06, T:0.26
Consensus pattern (22 bp):
ATCACCACCTACATCAGTCTCA
Found at i:22583043 original size:10 final size:10
Alignment explanation
Indices: 22583018--22583058 Score: 64
Period size: 10 Copynumber: 3.9 Consensus size: 10
22583008 AATAAAACAA
22583018 TAAAAATATAT
1 TAAAAATAT-T
22583029 ATAAAAATATT
1 -TAAAAATATT
22583040 TAAAAATATT
1 TAAAAATATT
22583050 TAAAAATAT
1 TAAAAATAT
22583059 AGAAAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 1 0.03
12 9 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TAAAAATATT
Found at i:22583048 original size:20 final size:22
Alignment explanation
Indices: 22583017--22583059 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22583007 AAATAAAACA
22583017 ATAAAAATATATATAAAA-ATAT
1 ATAAAAATATATA-AAAATATAT
* *
22583039 TTAAAAATATTTAAAAATATA
1 ATAAAAATATATAAAAATATA
22583060 GAAAAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAAAAATATATAAAAATATAT
Found at i:22583064 original size:10 final size:10
Alignment explanation
Indices: 22582990--22583066 Score: 59
Period size: 10 Copynumber: 7.6 Consensus size: 10
22582980 ACATATGATG
*
22582990 AAAAAAATAT
1 AAAAATATAT
* *
22583000 AAAACAAAAAT
1 AAAA-ATATAT
22583011 AAAACA-ATA-
1 AAAA-ATATAT
22583020 AAAATATATAT
1 AAAA-ATATAT
*
22583031 AAAAATATTT
1 AAAAATATAT
*
22583041 AAAAATATTT
1 AAAAATATAT
*
22583051 AAAAATATAG
1 AAAAATATAT
22583061 AAAAAT
1 AAAAAT
22583067 TTAAAATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.09
10 38 0.66
11 15 0.26
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (10 bp):
AAAAATATAT
Found at i:22583431 original size:21 final size:21
Alignment explanation
Indices: 22583402--22583441 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22583392 TAGCATTTTA
22583402 ATAAAATTTTAATATTTTTCT
1 ATAAAATTTTAATATTTTTCT
* * *
22583423 ATAATATTTTTATGTTTTT
1 ATAAAATTTTAATATTTTT
22583442 ATTGATTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
ATAAAATTTTAATATTTTTCT
Found at i:22583592 original size:10 final size:9
Alignment explanation
Indices: 22583577--22583635 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
22583567 CTATATGTTT
22583577 ATATTTTATA
1 ATATTTT-TA
22583587 ATATTTTTA
1 ATATTTTTA
22583596 ATAATTTTCT-
1 AT-ATTTT-TA
22583606 ATATTTTTA
1 ATATTTTTA
* *
22583615 GTAATTTTA
1 ATATTTTTA
*
22583624 ATTTTTTTA
1 ATATTTTTA
22583633 ATA
1 ATA
22583636 AAATTTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
8 1 0.03
9 24 0.60
10 14 0.35
11 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
ATATTTTTA
Found at i:22583607 original size:37 final size:37
Alignment explanation
Indices: 22583565--22583636 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
22583555 TTTCAGATAA
*
22583565 TTCTATATGTTTA-TATTTTATAATATTTTTAATAATT
1 TTCTATATGTTTAGTAATTT-TAATATTTTTAATAATT
* *
22583602 TTCTATATTTTTAGTAATTTTAATTTTTTTAATAA
1 TTCTATATGTTTAGTAATTTTAATATTTTTAATAA
22583637 AATTTAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 26 0.84
38 5 0.16
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (37 bp):
TTCTATATGTTTAGTAATTTTAATATTTTTAATAATT
Found at i:22583611 original size:19 final size:19
Alignment explanation
Indices: 22583565--22583636 Score: 69
Period size: 18 Copynumber: 3.9 Consensus size: 19
22583555 TTTCAGATAA
*
22583565 TTCTATATGTTT-AT-ATT
1 TTCTATATTTTTAATAATT
*
22583582 TTATAATATTTTTAATAATT
1 TTCT-ATATTTTTAATAATT
*
22583602 TTCTATATTTTTAGTAATT
1 TTCTATATTTTTAATAATT
* *
22583621 TT-AATTTTTTTAATAA
1 TTCTATATTTTTAATAA
22583637 AATTTAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
17 3 0.07
18 18 0.40
19 18 0.40
20 6 0.13
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TTCTATATTTTTAATAATT
Found at i:22591857 original size:37 final size:37
Alignment explanation
Indices: 22591807--22591918 Score: 206
Period size: 37 Copynumber: 3.0 Consensus size: 37
22591797 CAAGTCCAGG
*
22591807 CAGCATGAGGGTGCACAGCAGTATGTCACAGTACATT
1 CAGCATAAGGGTGCACAGCAGTATGTCACAGTACATT
22591844 CAGCATAAGGGTGCACAGCAGTATGTCACAGTACATT
1 CAGCATAAGGGTGCACAGCAGTATGTCACAGTACATT
*
22591881 CAGCAAAAGGGTGCACAGCAGTATGTCACAGTACATT
1 CAGCATAAGGGTGCACAGCAGTATGTCACAGTACATT
22591918 C
1 C
22591919 TCCTTATCAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (37 bp):
CAGCATAAGGGTGCACAGCAGTATGTCACAGTACATT
Found at i:22599381 original size:11 final size:11
Alignment explanation
Indices: 22599365--22599393 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
22599355 ATAATGACTT
22599365 GTAATTATAGA
1 GTAATTATAGA
22599376 GTAATTATAGA
1 GTAATTATAGA
22599387 GTAATTA
1 GTAATTA
22599394 GTATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (11 bp):
GTAATTATAGA
Found at i:22608681 original size:21 final size:21
Alignment explanation
Indices: 22608655--22608697 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22608645 AAGATAGTCA
22608655 TATTTAGACACACTTAAGCAT
1 TATTTAGACACACTTAAGCAT
22608676 TATTTAGACACACTTAAGCAT
1 TATTTAGACACACTTAAGCAT
22608697 T
1 T
22608698 CCTAATGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (21 bp):
TATTTAGACACACTTAAGCAT
Found at i:22616354 original size:6 final size:6
Alignment explanation
Indices: 22616336--22616396 Score: 50
Period size: 6 Copynumber: 9.5 Consensus size: 6
22616326 ATTGAGTCTA
* * *
22616336 TTTATT ATTTATT TTTATTTT TTTAGT TTTATT TCTATT TTTATG TTTATT
1 TTTATT -TTTATT TTTA--TT TTTATT TTTATT TTTATT TTTATT TTTATT
*
22616387 GTTATGT TTT
1 TTTAT-T TTT
22616397 TAAACTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
6 28 0.65
7 9 0.21
8 6 0.14
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:22616368 original size:20 final size:19
Alignment explanation
Indices: 22616343--22616398 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
22616333 CTATTTATTA
22616343 TTTATTTTTATTTTTTTAG
1 TTTATTTTTATTTTTTTAG
* *
22616362 TTTTATTTCTATTTTTAT-G
1 -TTTATTTTTATTTTTTTAG
* *
22616381 TTTATTGTTATGTTTTTA
1 TTTATTTTTATTTTTTTA
22616399 AACTTTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 13 0.45
19 1 0.03
20 15 0.52
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (19 bp):
TTTATTTTTATTTTTTTAG
Found at i:22620055 original size:22 final size:23
Alignment explanation
Indices: 22620011--22620108 Score: 90
Period size: 25 Copynumber: 4.1 Consensus size: 23
22620001 CATTTCAGCT
* *
22620011 CTTATGAGCTTACCGATACTCAG
1 CTTATGAGCTTACCGTTATTCAG
22620034 -TTATGAGCTTACCGTTATTCAG
1 CTTATGAGCTTACCGTTATTCAG
* *
22620056 CTCGAAGGAGCTTACCGTTATTCAG
1 CT--TATGAGCTTACCGTTATTCAG
* * *
22620081 CTCGAAGGAACTTACCGTTATTCAG
1 CT--TATGAGCTTACCGTTATTCAG
22620106 CTT
1 CTT
22620109 GGAGGAGCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.30
23 1 0.02
25 45 0.68
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (23 bp):
CTTATGAGCTTACCGTTATTCAG
Found at i:22620069 original size:25 final size:25
Alignment explanation
Indices: 22620038--22620119 Score: 137
Period size: 25 Copynumber: 3.3 Consensus size: 25
22620028 ACTCAGTTAT
22620038 GAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGTTATTCAGCTCGAAG
22620063 GAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGTTATTCAGCTCGAAG
* * *
22620088 GAACTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTCGAAG
22620113 GAGCTTA
1 GAGCTTA
22620120 TCGCTTACAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTCGAAG
Found at i:22621850 original size:11 final size:11
Alignment explanation
Indices: 22621820--22621852 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
22621810 TTGTCATGTT
22621820 AGTGAAGAGAA
1 AGTGAAGAGAA
*
22621831 AAT-AAGAGAA
1 AGTGAAGAGAA
22621841 AGTGAAGAGAA
1 AGTGAAGAGAA
22621852 A
1 A
22621853 TAGTGTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (11 bp):
AGTGAAGAGAA
Found at i:22622717 original size:55 final size:55
Alignment explanation
Indices: 22622654--22622772 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
22622644 GGGGCAATTT
*
22622654 TGTAAAAATGTTAAAATGAACAAATTGAAGAGAATGAATTGTTTTATTATCTAAA
1 TGTAAAAATGTCAAAATGAACAAATTGAAGAGAATGAATTGTTTTATTATCTAAA
22622709 TGTAAAAATGTCAAAATGAACAAATTGAAGAGAATGAATTGTTTTATTATCTAAA
1 TGTAAAAATGTCAAAATGAACAAATTGAAGAGAATGAATTGTTTTATTATCTAAA
22622764 T-TAATAAAT
1 TGTAA-AAAT
22622773 TAAATGAAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
54 3 0.05
55 59 0.95
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.34
Consensus pattern (55 bp):
TGTAAAAATGTCAAAATGAACAAATTGAAGAGAATGAATTGTTTTATTATCTAAA
Found at i:22623378 original size:46 final size:46
Alignment explanation
Indices: 22623326--22623555 Score: 318
Period size: 46 Copynumber: 5.0 Consensus size: 46
22623316 GTGCTCTCTA
* *
22623326 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
22623372 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * *
22623418 ATATGGAATGAATAAAACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
22623464 ATATGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAACATG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * * *
22623510 ACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
22623556 TCAAAGATAA
Statistics
Matches: 169, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 168 0.99
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (46 bp):
ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:22623657 original size:13 final size:13
Alignment explanation
Indices: 22623639--22623694 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
22623629 TCAGATAACG
22623639 AATGGTTATATGA
1 AATGGTTATATGA
*
22623652 AATGGTTATGTGA
1 AATGGTTATATGA
* * *
22623665 AATGTTTACAAGA
1 AATGGTTATATGA
*
22623678 ACTGGTTATATGGA
1 AATGGTTATAT-GA
22623692 AAT
1 AAT
22623695 ATATGTACAA
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
13 28 0.88
14 4 0.12
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.36
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:22628330 original size:17 final size:19
Alignment explanation
Indices: 22628310--22628347 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22628300 AAATAATATA
22628310 TTATA-TAA-AATATATTT
1 TTATATTAACAATATATTT
*
22628327 TTATATTAACAATGTATTT
1 TTATATTAACAATATATTT
22628346 TT
1 TT
22628348 TGAAGTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (19 bp):
TTATATTAACAATATATTT
Found at i:22631232 original size:15 final size:13
Alignment explanation
Indices: 22631199--22631235 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
22631189 TCAAATGGGA
22631199 GAAGAGAGAAAAC
1 GAAGAGAGAAAAC
22631212 GAAGAGAGAAAAC
1 GAAGAGAGAAAAC
22631225 GAAGAGAGAAA
1 GAAGAGAGAAA
22631236 GATTGGTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.62, C:0.05, G:0.32, T:0.00
Consensus pattern (13 bp):
GAAGAGAGAAAAC
Found at i:22633363 original size:21 final size:21
Alignment explanation
Indices: 22633337--22633377 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22633327 ATCTGCTCAA
* *
22633337 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
22633358 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
22633378 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:22636872 original size:19 final size:18
Alignment explanation
Indices: 22636840--22636881 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
22636830 TATGCCAAAG
22636840 AAATTAAAAAAAAAATTA
1 AAATTAAAAAAAAAATTA
*
22636858 AAATATAAAACAAAAATTA
1 AAAT-TAAAAAAAAAATTA
*
22636877 CAATT
1 AAATT
22636882 GGATCAACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATTAAAAAAAAAATTA
Found at i:22637600 original size:3 final size:3
Alignment explanation
Indices: 22637594--22637650 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
22637584 ATCTTCTTCT
* * *
22637594 AGA AGA AGA A-A AGA AGA TAAA AGA AGA AGG AGA AGA AGG AGA AGA
1 AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA AGA AGA
* *
22637639 AGG CGA AGA AGA
1 AGA AGA AGA AGA
22637651 CTATTTGGGT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
2 2 0.05
3 38 0.90
4 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.35, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:22637629 original size:9 final size:9
Alignment explanation
Indices: 22637615--22637649 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
22637605 AGAAGATAAA
22637615 AGAAGAAGG
1 AGAAGAAGG
22637624 AGAAGAAGG
1 AGAAGAAGG
22637633 AGAAGAAGG
1 AGAAGAAGG
*
22637642 CGAAGAAG
1 AGAAGAAG
22637650 ACTATTTGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.54, C:0.03, G:0.43, T:0.00
Consensus pattern (9 bp):
AGAAGAAGG
Found at i:22648967 original size:31 final size:32
Alignment explanation
Indices: 22648906--22648971 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
22648896 CAACAAATTT
*
22648906 AATAATTTAAGTGACTTAAATGAAAATTTTTA
1 AATAATTTAAGTGACTCAAATGAAAATTTTTA
* *
22648938 AATAATTTAA-TGA-TCAAATTGTAATTTTTTA
1 AATAATTTAAGTGACTCAAA-TGAAAATTTTTA
22648969 AAT
1 AAT
22648972 TAAAAAATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 4 0.13
31 16 0.53
32 10 0.33
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (32 bp):
AATAATTTAAGTGACTCAAATGAAAATTTTTA
Found at i:22654000 original size:21 final size:21
Alignment explanation
Indices: 22653974--22654014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22653964 AGACGAGCGA
* *
22653974 TACTCCATAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
22653995 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
22654015 TTGATCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:22657441 original size:22 final size:22
Alignment explanation
Indices: 22657411--22657457 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22657401 CTCAATGCCT
22657411 GATTAGTCATCTAATTAGTCAA
1 GATTAGTCATCTAATTAGTCAA
* * *
22657433 GATTTGTCATTTGATTAGTCAA
1 GATTAGTCATCTAATTAGTCAA
22657455 GAT
1 GAT
22657458 ATGATCAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (22 bp):
GATTAGTCATCTAATTAGTCAA
Found at i:22657816 original size:27 final size:27
Alignment explanation
Indices: 22657786--22657849 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
22657776 CGCATATTTC
**
22657786 TTTATATATTATT-ATATTGTTAAATT
1 TTTATATATTATTAATATACTTAAATT
22657812 ATTTATATATTATTAATATACTTAAATT
1 -TTTATATATTATTAATATACTTAAATT
*
22657840 TATATATATT
1 TTTATATATT
22657850 TAAATTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 22 0.67
28 11 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (27 bp):
TTTATATATTATTAATATACTTAAATT
Found at i:22657852 original size:16 final size:15
Alignment explanation
Indices: 22657823--22657861 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
22657813 TTTATATATT
22657823 ATTA-ATATACTTAA
1 ATTATATATACTTAA
*
22657837 ATTTATATATATTTAA
1 A-TTATATATACTTAA
22657853 ATTATATAT
1 ATTATATAT
22657862 TTAAATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.50
16 10 0.45
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTATATATACTTAA
Found at i:22657860 original size:13 final size:13
Alignment explanation
Indices: 22657842--22657867 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22657832 CTTAAATTTA
22657842 TATATATTTAAAT
1 TATATATTTAAAT
22657855 TATATATTTAAAT
1 TATATATTTAAAT
22657868 GATAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATTTAAAT
Found at i:22657945 original size:14 final size:14
Alignment explanation
Indices: 22657928--22657957 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22657918 CTATAATTTA
*
22657928 AATTTTCAAAATAG
1 AATTTTAAAAATAG
22657942 AATTTTAAAAATAG
1 AATTTTAAAAATAG
22657956 AA
1 AA
22657958 ATAGGGATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (14 bp):
AATTTTAAAAATAG
Found at i:22665335 original size:18 final size:19
Alignment explanation
Indices: 22665288--22665335 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
22665278 TTAATTCATC
22665288 TTATATAAATTGTATTTAT
1 TTATATAAATTGTATTTAT
*
22665307 TTAATCGATAAATTTTA-TTAT
1 TT-AT--ATAAATTGTATTTAT
22665328 TTATATAA
1 TTATATAA
22665336 CCAAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 4 0.16
19 2 0.08
20 4 0.16
21 6 0.24
22 9 0.36
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
TTATATAAATTGTATTTAT
Found at i:22665760 original size:26 final size:25
Alignment explanation
Indices: 22665719--22665767 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
22665709 TATAAAAAAA
*
22665719 TTTAATTTTTAATAAATTTTAATTT
1 TTTAATTTTTAATAAAATTTAATTT
*
22665744 TTTATATTTTTATTAAAATTTAAT
1 TTTA-ATTTTTAATAAAATTTAAT
22665768 AATTTTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTAATTTTTAATAAAATTTAATTT
Found at i:22665765 original size:18 final size:18
Alignment explanation
Indices: 22665744--22665794 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
22665734 ATTTTAATTT
22665744 TTTATATTTTTATTAAAA
1 TTTATATTTTTATTAAAA
*
22665762 TTTAATAATTTTT-CTAAAA
1 TTT-AT-ATTTTTATTAAAA
22665781 TTTATTATTTTTAT
1 TTTA-TATTTTTAT
22665795 AATTTTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATATTTTTATTAAAA
Found at i:22672190 original size:4 final size:4
Alignment explanation
Indices: 22672181--22672207 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
22672171 ATCGCAAATC
22672181 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
22672208 TATATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:22676596 original size:64 final size:65
Alignment explanation
Indices: 22676528--22676976 Score: 275
Period size: 67 Copynumber: 6.9 Consensus size: 65
22676518 AGGTTTGCTA
22676528 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGA-GTTAATTG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGGTTAATTG
* ** * * * * * *
22676592 ATTTAATATCGCAACTCCAAACAACTCGTT-GATTTAATATCA-CAACTGATATT-GTTAAGGTT
1 ATTTAATATCGCAA--CC-TA-AGTTCATTCGATTTAATATCATGAAC-AATCTTATTTGAGGTT
*
22676654 -CTATG
61 AAT-TG
* * * * *
22676659 ATTTAAGATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTATTTGA-CTTAAATG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGGTTAATTG
* * * * * * *
22676723 ATTTAAAATCACAACTCCAAATAGC-TAGCTGATTTAATAT--T--ACAGT-TGATATCATTGAG
1 ATTTAATATCGCAAC-CTAAGT-TCAT-TC-GATTTAATATCATGAACAATCT--TAT--TTGAG
**
22676782 GTTCGTTG
58 GTTAATTG
*
22676790 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGA-GTTACTTG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGGTTAATTG
* * * * * * * *
22676854 ATTTAATATCGCAACTCCAAATAGC-TTGCTGATTTAATATC--GCAGCTGATATCA-TTAAGGT
1 ATTTAATATCGCAAC-CTAAGT-TCATT-C-GATTTAATATCATG-AAC-AATCTTATTTGAGGT
* *
22676915 TCACTG
60 TAATTG
*
22676921 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGA
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGA
22676977 TTTAGCTAAT
Statistics
Matches: 284, Mismatches: 64, Indels: 73
0.67 0.15 0.17
Matches are distributed among these distances:
62 1 0.00
63 9 0.03
64 97 0.34
65 34 0.12
66 34 0.12
67 99 0.35
68 9 0.03
69 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.38
Consensus pattern (65 bp):
ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGGTTAATTG
Found at i:22676990 original size:64 final size:64
Alignment explanation
Indices: 22676528--22676997 Score: 243
Period size: 64 Copynumber: 7.2 Consensus size: 64
22676518 AGGTTTGCTA
* **
22676528 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGTTAATTG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGAGTTAGCTG
* ** * * * *
22676592 ATTTAATATCGCAACTCCAAACAACTCGTT-GATTTAATATCA-CAAC--TGATATTGTTAAGGT
1 ATTTAATATCGCAA--CC-TA-AGTTCATTCGATTTAATATCATGAACAATCATA-T-TTGA-GT
***
22676653 TCTATG
59 TAGCTG
* * * * * **
22676659 ATTTAAGATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTATTTGACTTAAATG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGAGTTAGCTG
* * * * * * * *
22676723 ATTTAAAATCACAACTCCAAATAGC-TAGCTGATTTAATAT--T--ACAGTTGATATCATTGAGG
1 ATTTAATATCGCAAC-CTAAGT-TCAT-TC-GATTTAATATCATGAACA-ATCATAT--TTGA-G
* *
22676783 TTCGTTG
58 TTAGCTG
*
22676790 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCTTATTTGAGTTA-CTTG
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGAGTTAGC-TG
* * * * * *
22676854 ATTTAATATCGCAACTCCAAATAGC-TTGCTGATTTAATATC--G--CAGCTGATATCATTAAGG
1 ATTTAATATCGCAAC-CTAAGT-TCATT-C-GATTTAATATCATGAACA-ATCATAT--TTGA-G
22676914 TTCA-CTG
58 TT-AGCTG
* *
22676921 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGATTTAGCTA
1 ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGAGTTAGCTG
*
22676985 ATTTAAGATCGCA
1 ATTTAATATCGCA
22676998 TCTCCAAACA
Statistics
Matches: 302, Mismatches: 64, Indels: 80
0.68 0.14 0.18
Matches are distributed among these distances:
63 11 0.04
64 114 0.38
65 33 0.11
66 32 0.11
67 100 0.33
68 12 0.04
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (64 bp):
ATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATGAACAATCATATTTGAGTTAGCTG
Found at i:22677119 original size:131 final size:131
Alignment explanation
Indices: 22676488--22677111 Score: 761
Period size: 131 Copynumber: 4.8 Consensus size: 131
22676478 ATTTGAGTCA
* * * * * *
22676488 GCTGATTTAAGATCATAACTGAAAT-ATTTAAGGTTTGCTAATTTAATATCGCAACCTAAGTTCA
1 GCTGATTTAATATCACAACTGATATCA-TTAAGGTTCGTTGATTTAATATCGCAACCTAAGTTCA
*
22676552 TTCGATTTAATATCATGAACAATCTTATTTGAGTTAATTGATTTAATATCGCAACTCCAAACAAC
65 TTCGATTTAATATCATGAACAATCTTATTTGAGTTAACTGATTTAATATCGCAACTCCAAACAAC
22676617 TC
130 TC
* ** * *
22676619 GTTGATTTAATATCACAACTGATATTGTTAAGGTTC-TATGATTTAAGATCACAACCTAAGTTCA
1 GCTGATTTAATATCACAACTGATATCATTAAGGTTCGT-TGATTTAATATCGCAACCTAAGTTCA
* * * * * * *
22676683 TTTGATTTAATATCATGAACAATCTTATTTGACTTAAATGATTTAAAATCACAACTCCAAATAGC
65 TTCGATTTAATATCATGAACAATCTTATTTGAGTTAACTGATTTAATATCGCAACTCCAAACAAC
*
22676748 TA
130 TC
* ** *
22676750 GCTGATTTAATATTACAGTTGATATCATTGAGGTTCGTTGATTTAATATCGCAACCTAAGTTCAT
1 GCTGATTTAATATCACAACTGATATCATTAAGGTTCGTTGATTTAATATCGCAACCTAAGTTCAT
* *
22676815 TCGATTTAATATCATGAACAATCTTATTTGAGTT-ACTTGATTTAATATCGCAACTCCAAATAGC
66 TCGATTTAATATCATGAACAATCTTATTTGAGTTAAC-TGATTTAATATCGCAACTCCAAACAAC
*
22676879 TT
130 TC
* * **
22676881 GCTGATTTAATATCGCAGCTGATATCATTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCAT
1 GCTGATTTAATATCACAACTGATATCATTAAGGTTCGTTGATTTAATATCGCAACCTAAGTTCAT
* * * * * *
22676946 TCGATTTAATATCATGAACAATCATATTTGATTTAGCTAATTTAAGATCGCATCTCCAAACAACT
66 TCGATTTAATATCATGAACAATCTTATTTGAGTTAACTGATTTAATATCGCAACTCCAAACAACT
22677011 C
131 C
* * * * * * * *
22677012 GCTGATTAAAAATCGCAATTGATATCGTTAAGGTTCGTTGATTTAATTTCGTAATCTAAGTTCAT
1 GCTGATTTAATATCACAACTGATATCATTAAGGTTCGTTGATTTAATATCGCAACCTAAGTTCAT
* *
22677077 TCGATTTAGTATCATGAACAAT-TTCATTTGTGTTA
66 TCGATTTAATATCATGAACAATCTT-ATTTGAGTTA
22677112 GCTAATTTTC
Statistics
Matches: 425, Mismatches: 62, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
130 2 0.00
131 421 0.99
132 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (131 bp):
GCTGATTTAATATCACAACTGATATCATTAAGGTTCGTTGATTTAATATCGCAACCTAAGTTCAT
TCGATTTAATATCATGAACAATCTTATTTGAGTTAACTGATTTAATATCGCAACTCCAAACAACT
C
Found at i:22679057 original size:22 final size:22
Alignment explanation
Indices: 22679029--22679097 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 22
22679019 TCTCTGATTA
*
22679029 TTAGCACGTTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
22679051 TTAGCACATTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
* * * *
22679073 ATAACACTTTAGTGCTCTCTAT
1 TTAGCACATTAGTGCTCTCTGT
22679095 TTA
1 TTA
22679098 ATAGTGCATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:22683419 original size:40 final size:39
Alignment explanation
Indices: 22683355--22683540 Score: 158
Period size: 41 Copynumber: 4.6 Consensus size: 39
22683345 ACTCGATATC
* * * * *
22683355 TTGCACATTAAGTGTCGTACATAGCCAAAGCCATCTCAAA
1 TTGCACACTAAGTGCCATATATAGCCAAAGCTATCTC-AA
*
22683395 TTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
1 TTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCAA
* * * *
22683434 TCTCGCATACAAAGTGCCATATATAGACAAAGTTATCTCAA
1 T-T-GCACACTAAGTGCCATATATAGCCAAAGCTATCTCAA
* * * *
22683475 TCTCGCACACGAAATGCCATATATAGCCGAAA-CTATGTTGAA
1 T-T-GCACACTAAGTGCCATATATAGCC-AAAGCTAT-CTCAA
* *
22683517 TCGCACACTAAGTGCCACATATAG
1 TTGCACACTAAGTGCCATATATAG
22683541 TTGATTTGTC
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 51 0.43
41 59 0.49
42 7 0.06
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (39 bp):
TTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCAA
Found at i:22686731 original size:5 final size:5
Alignment explanation
Indices: 22686708--22686752 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
22686698 AAAAATAACT
* * *
22686708 TTTTA CTTTA TTTAA TTTTC TTTTA TTTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTT
22686753 TAAAAAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:22686741 original size:16 final size:16
Alignment explanation
Indices: 22686708--22686754 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
22686698 AAAAATAACT
* *
22686708 TTTTACTTTA-TTTAA
1 TTTTATTTTATTTTTA
*
22686723 TTTTCTTTTATTTTTA
1 TTTTATTTTATTTTTA
22686739 TTTTATTTTATTTTTA
1 TTTTATTTTATTTTTA
22686755 AAAAAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATTTTATTTTTA
Found at i:22698817 original size:53 final size:53
Alignment explanation
Indices: 22698670--22698835 Score: 203
Period size: 53 Copynumber: 3.1 Consensus size: 53
22698660 GACGAAAAAT
* * **
22698670 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATAGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
22698722 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * * *
22698775 ATGTGATAATGTGATTCCGTATAAGACCAT-GTTTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
22698829 TATGTGA
1 -ATGTGA
22698836 ACCGTGTAAG
Statistics
Matches: 101, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 79 0.78
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:22715675 original size:18 final size:18
Alignment explanation
Indices: 22715652--22715728 Score: 68
Period size: 18 Copynumber: 4.3 Consensus size: 18
22715642 AGTCAGTCAA
*
22715652 CAGTAATAATCGATTAAT
1 CAGTAATAATCGATTATT
*
22715670 CAGTAACAATC-ATTTATT
1 CAGTAATAATCGA-TTATT
* *
22715688 CAGT-ATCAGTCGTTTATT
1 CAGTAAT-AATCGATTATT
* *
22715706 CAGTAATAGTCAATTATT
1 CAGTAATAATCGATTATT
22715724 CAGTA
1 CAGTA
22715729 GCAGTCAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 2 0.04
18 44 0.92
19 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
CAGTAATAATCGATTATT
Found at i:22715734 original size:18 final size:18
Alignment explanation
Indices: 22715664--22715735 Score: 72
Period size: 18 Copynumber: 4.0 Consensus size: 18
22715654 GTAATAATCG
* *
22715664 ATTAATCAGTAACAATCA
1 ATTATTCAGTAACAGTCA
* * *
22715682 TTTATTCAGTATCAGTCG
1 ATTATTCAGTAACAGTCA
* *
22715700 TTTATTCAGTAATAGTCA
1 ATTATTCAGTAACAGTCA
*
22715718 ATTATTCAGTAGCAGTCA
1 ATTATTCAGTAACAGTCA
22715736 GTCTTTAATA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
ATTATTCAGTAACAGTCA
Found at i:22717134 original size:21 final size:20
Alignment explanation
Indices: 22717110--22717155 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
22717100 AAAATCTTAT
*
22717110 AATATAATTATTTAATTAATA
1 AATAT-ATTATTTAAATAATA
* *
22717131 AATATCTTTTTTAAATAATA
1 AATATATTATTTAAATAATA
22717151 AATAT
1 AATAT
22717156 CTAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
AATATATTATTTAAATAATA
Found at i:22717143 original size:20 final size:20
Alignment explanation
Indices: 22717120--22717157 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22717110 AATATAATTA
*
22717120 TTTAATTAATAAATATCTTT
1 TTTAAATAATAAATATCTTT
22717140 TTTAAATAATAAATATCT
1 TTTAAATAATAAATATCT
22717158 AATAATACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTAAATAATAAATATCTTT
Found at i:22723792 original size:22 final size:21
Alignment explanation
Indices: 22723767--22723826 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
22723757 TGGACTGAAT
22723767 ATAAAAATTTAAACTAAATAAA
1 ATAAAAATTTAAACTAAA-AAA
* * *
22723789 ATAAATAAATAAAAATAAAAAA
1 ATAAA-AATTTAAACTAAAAAA
*
22723811 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
22723827 TGGGCCACTT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 10 0.34
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (21 bp):
ATAAAAATTTAAACTAAAAAA
Found at i:22723803 original size:14 final size:14
Alignment explanation
Indices: 22723776--22723816 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
22723766 TATAAAAATT
22723776 TAAACTAAAT-AAAA
1 TAAA-TAAATAAAAA
22723790 TAAATAAATAAAAA
1 TAAATAAATAAAAA
*
22723804 TAAAAAAATAAAA
1 TAAATAAATAAAA
22723817 CTTTACAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAATAAATAAAAA
Found at i:22725215 original size:23 final size:22
Alignment explanation
Indices: 22725164--22725215 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
22725154 CCTCGTCTTT
*
22725164 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
22725186 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
22725209 TTCTTTT
1 TTCTTTT
22725216 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:22730045 original size:4 final size:4
Alignment explanation
Indices: 22730036--22730062 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
22730026 CTGCTTCCCT
22730036 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
22730063 GAGTGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:22737210 original size:139 final size:141
Alignment explanation
Indices: 22736520--22737732 Score: 1744
Period size: 139 Copynumber: 8.7 Consensus size: 141
22736510 AAGATTAAGC
* * * * * * *
22736520 AAAGACCTTTACCCTGTTAACCCATCATTATCTATATTGAGATGTTACAATGATTCTACTTTCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
* * * * *
22736585 CACCAAAATATTTAACACCTATACAATCTA-CTAATCTAGGTCATT-ATCATCATCAATGAAAAC
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAAT-ATCATCAAGGACAAC
22736648 AAAAGACCTGAAG
130 -AAAGACCTGAAG
* * * * *
22736661 AAAGTCCTTTACCCTATTAACCCATCTTTATCTATTTTGGGATGTTACAATGATTCTACTTTCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
* * * * *
22736726 CACCAAAATATTTAACACCTATACAATCTA-CTAATCTAGGTCATT-ATCATCATCAATGAAAAC
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAAT-ATCATCAAGGACAAC
22736789 AAAAGACCTGAAG
130 -AAAGACCTGAAG
* * * * *
22736802 AAAGTCCTTTACCCTATTAACCCATCTTTATCTATTTTGGGATGTTACAATGATTCTACTTTCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
* * * * *
22736867 CACCAAAATATTTAACACCTATACAATCTA-CTAATCTAGGTCATT-ATCATCATCAATGAAAAC
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAAT-ATCATCAAGGACAAC
22736930 AAAAGACCTGAAG
130 -AAAGACCTGAAG
* * * *
22736943 AAAGTCCTTTACCCTATTAACCCATCTTTATCTATTTTGGGATGTTACAATGATTCTACTTTCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTAC-TTC--
22737008 CATCACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACA
63 CATCACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACA
22737073 AC-AA-ACCTGAAG
128 ACAAAGACCTGAAG
* *
22737085 AAAGTCCTTTTCCTTATTAACCCATCTTTGTCTATCTCGAGATGTTACAATGATTCTACTTCCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
22737150 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAAC-
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAACA
22737214 AA-ACCTGAAG
131 AAGACCTGAAG
* *
22737224 AAAGTCCTTTTCCTTATTAACCCATCTTTGTCTATCTCGAGATGTTACAATGATTCTACTTCCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
22737289 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAAC-
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAACA
22737353 AA-ACCTGAAG
131 AAGACCTGAAG
* *
22737363 AAAGTCCTTTTCCTTATTAACCCATCTTTGTCTATCTCGAGATGTTACAATGATTCTACTTCCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
22737428 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAAC-
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAACA
22737492 AA-ACCTGAAG
131 AAGACCTGAAG
* *
22737502 AAAGTCCTTTTCCTTATTAACCCATCTTTGTCTATCTCGAGATGTTACAATGATTCTACTTCCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
* * * *
22737567 CACTAAAATATTTAACACCCATACAATCTATCAAATATGGGTCATTAACATCATCAATGACAACA
66 CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAAC-
22737632 AAAGACCT-AAG
130 AAAGACCTGAAG
*
22737643 AAAGTCCTTTACCTTGTTAACCCATCTTTAT-T-T-T-GAGATGTTACAATGATTCTACTTCCAT
1 AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
* *
22737704 CACTAAAATATTTAACACTCATATAATCT
66 CACTAAAATATTTAACACCCATACAATCT
22737733 GGGTCATTAA
Statistics
Matches: 1038, Mismatches: 26, Indels: 20
0.96 0.02 0.02
Matches are distributed among these distances:
137 54 0.05
138 1 0.00
139 481 0.46
140 1 0.00
141 372 0.36
142 67 0.06
143 2 0.00
144 31 0.03
145 27 0.03
146 2 0.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (141 bp):
AAAGTCCTTTACCTTATTAACCCATCTTTATCTATCTCGAGATGTTACAATGATTCTACTTCCAT
CACTAAAATATTTAACACCCATACAATCTATCTAATCTGGGTCATTAATATCATCAAGGACAACA
AAGACCTGAAG
Found at i:22738318 original size:51 final size:51
Alignment explanation
Indices: 22738242--22738345 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
22738232 TCTCCCCTAA
* *
22738242 TTCTAGTGCAGCTCCTATGGGAAGGGCCATTCTTTCCATATCTTTCATAGC
1 TTCTAGTGCAGCTCCTATGAGAAGGGCCATTCATTCCATATCTTTCATAGC
22738293 TTCTAGTGCAGCTCCTATGAGAAGGGCCATTCATTCCATATCTTTCATAGC
1 TTCTAGTGCAGCTCCTATGAGAAGGGCCATTCATTCCATATCTTTCATAGC
22738344 TT
1 TT
22738346 TGTGATGATG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (51 bp):
TTCTAGTGCAGCTCCTATGAGAAGGGCCATTCATTCCATATCTTTCATAGC
Found at i:22757800 original size:16 final size:16
Alignment explanation
Indices: 22757781--22757819 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
22757771 GCTGAGTTCT
* *
22757781 TTTCTTTTGTTTTTTC
1 TTTCTTTCGTTTTTGC
*
22757797 TTTCATTCGTTTTTGC
1 TTTCTTTCGTTTTTGC
22757813 TTTCTTT
1 TTTCTTT
22757820 GCTACTGCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTCTTTCGTTTTTGC
Found at i:22762290 original size:16 final size:16
Alignment explanation
Indices: 22762271--22762310 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
22762261 GCTGAGTTCT
*
22762271 TTTCTTTGGTTTTTTC
1 TTTCTTTGGTTTTTGC
* *
22762287 TTTCATTCGTTTTTGC
1 TTTCTTTGGTTTTTGC
22762303 TTTCTTTG
1 TTTCTTTG
22762311 CTACTGCCAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.12, T:0.70
Consensus pattern (16 bp):
TTTCTTTGGTTTTTGC
Found at i:22764246 original size:11 final size:11
Alignment explanation
Indices: 22764232--22764260 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
22764222 ATTTTAAAAA
22764232 TAAAATTATTT
1 TAAAATTATTT
22764243 TAAAA-TATTT
1 TAAAATTATTT
22764253 TAAAATTA
1 TAAAATTA
22764261 AAAAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAAAATTATTT
Found at i:22764271 original size:8 final size:7
Alignment explanation
Indices: 22764254--22764288 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
22764244 AAAATATTTT
*
22764254 AAAATTA
1 AAAAATA
22764261 AAAAATA
1 AAAAATA
22764268 AAAAATA
1 AAAAATA
22764275 AAAAATA
1 AAAAATA
22764282 AAAAATA
1 AAAAATA
22764289 TATATTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAAATA
Found at i:22765032 original size:81 final size:81
Alignment explanation
Indices: 22764897--22765058 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
22764887 TATTAGTTGT
22764897 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
1 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
22764962 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
*
22764978 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
1 ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
22765043 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
22765059 GGGCATGACT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.49, C:0.19, G:0.07, T:0.25
Consensus pattern (81 bp):
ATAAGACAATTTAACTTAAACACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
ATAATCATATAAAAAA
Found at i:22766237 original size:16 final size:17
Alignment explanation
Indices: 22766199--22766230 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22766189 CCGGTTTTTT
22766199 ATTTAA-TTTTTAAATA
1 ATTTAATTTTTTAAATA
22766215 ATTTAATTTTTTAAAT
1 ATTTAATTTTTTAAAT
22766231 TTTTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTAATTTTTTAAATA
Found at i:22775334 original size:19 final size:19
Alignment explanation
Indices: 22775310--22775346 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22775300 CGCATGTAAT
*
22775310 ATAATATTTAAATATTGAC
1 ATAATATATAAATATTGAC
*
22775329 ATAATATATACATATTGA
1 ATAATATATAAATATTGA
22775347 AAAAAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAATATATAAATATTGAC
Found at i:22775511 original size:13 final size:14
Alignment explanation
Indices: 22775481--22775509 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22775471 ATATATGGTT
22775481 AATAGAAATAAAAA
1 AATAGAAATAAAAA
22775495 AATAGAAATAAAAA
1 AATAGAAATAAAAA
22775509 A
1 A
22775510 TATACACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
AATAGAAATAAAAA
Found at i:22780990 original size:16 final size:16
Alignment explanation
Indices: 22780966--22781008 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
22780956 GGTTGGGGGA
*
22780966 AATGGAATAGGGTTGT
1 AATGGAATAGAGTTGT
*
22780982 AATGAAATAGAGTTGT
1 AATGGAATAGAGTTGT
22780998 AATGGAATAGA
1 AATGGAATAGA
22781009 ACTGTAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (16 bp):
AATGGAATAGAGTTGT
Found at i:22781233 original size:15 final size:15
Alignment explanation
Indices: 22781213--22781244 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
22781203 TTATTATTAA
22781213 ATATAATTTAATAAT
1 ATATAATTTAATAAT
22781228 ATATAATTTAATAAT
1 ATATAATTTAATAAT
22781243 AT
1 AT
22781245 TCTTAATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATAATTTAATAAT
Found at i:22781618 original size:45 final size:45
Alignment explanation
Indices: 22781553--22781639 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
22781543 GGTTGCAGAC
* *
22781553 ATCTCCACCTTCAACGTAATGGTTCCTCTTCTTCTTTAGACCGAT
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
* *
22781598 ATCTCCACCTTCGACATAATGGTTTCTCTTCTTCTTCAGACC
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACC
22781640 ACCCAATGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.38
Consensus pattern (45 bp):
ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
Found at i:22782153 original size:20 final size:21
Alignment explanation
Indices: 22782116--22782159 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
22782106 AAATATGTTA
** *
22782116 AAAATATTTTAATTATTATTT
1 AAAATATTTTAAAAATTAATT
22782137 AAAA-ATTTTAAAAATTAATT
1 AAAATATTTTAAAAATTAATT
22782157 AAA
1 AAA
22782160 TATGTAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATATTTTAAAAATTAATT
Found at i:22783129 original size:19 final size:19
Alignment explanation
Indices: 22783105--22783154 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
22783095 TTAAAATTCT
22783105 TTTTATTTTTCTTAT-TTTC
1 TTTTATTTTT-TTATCTTTC
*
22783124 TTTTATATTATTTATCTTTC
1 TTTTAT-TTTTTTATCTTTC
22783144 -TTTATTTTTTT
1 TTTTATTTTTTT
22783155 TCCTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 15 0.56
20 7 0.26
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTATTTTTTTATCTTTC
Found at i:22783462 original size:21 final size:21
Alignment explanation
Indices: 22783437--22783477 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22783427 ATTGAACCAA
*
22783437 TTTTATCTATTTTTTAAATAT
1 TTTTATCAATTTTTTAAATAT
*
22783458 TTTTATGAATTTTTTAAATA
1 TTTTATCAATTTTTTAAATA
22783478 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTATCAATTTTTTAAATAT
Found at i:22786679 original size:21 final size:22
Alignment explanation
Indices: 22786626--22786684 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
22786616 AGGACACATG
22786626 CATAGTATATATATAAAAATGT
1 CATAGTATATATATAAAAATGT
22786648 -ATACGTA-ATATAATAAAAAT-T
1 CATA-GTATATAT-ATAAAAATGT
22786669 ACATAGTATATATATA
1 -CATAGTATATATATA
22786685 TGTTAGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
21 8 0.25
22 17 0.53
23 7 0.22
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.36
Consensus pattern (22 bp):
CATAGTATATATATAAAAATGT
Found at i:22787310 original size:25 final size:22
Alignment explanation
Indices: 22787282--22787331 Score: 55
Period size: 25 Copynumber: 2.1 Consensus size: 22
22787272 AAAATATAAC
*
22787282 AGTAATAAAGTATAATATTATGAAT
1 AGTAATAAAAT-TAA-ATTA-GAAT
*
22787307 AGTATTAAAATTAAATTAGAAT
1 AGTAATAAAATTAAATTAGAAT
22787329 AGT
1 AGT
22787332 GAGGATGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 4 0.17
24 3 0.13
25 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (22 bp):
AGTAATAAAATTAAATTAGAAT
Found at i:22787390 original size:20 final size:21
Alignment explanation
Indices: 22787354--22787392 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22787344 ACCATTTTCA
*
22787354 AATCGAGTTTTAGAAAATGGG
1 AATCGAGTTTTAAAAAATGGG
22787375 AATCGA-TTTTAAAAAATG
1 AATCGAGTTTTAAAAAATG
22787393 AAAACGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (21 bp):
AATCGAGTTTTAAAAAATGGG
Found at i:22788551 original size:26 final size:26
Alignment explanation
Indices: 22788516--22788565 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22788506 AGCAAATAAA
* * *
22788516 AAAATGTAATATTTAATAATAAATTT
1 AAAATATAATATATAATAAAAAATTT
22788542 AAAATATAATATATAATAAAAAAT
1 AAAATATAATATATAATAAAAAAT
22788566 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATATAATATATAATAAAAAATTT
Found at i:22788660 original size:50 final size:50
Alignment explanation
Indices: 22788606--22788705 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
22788596 TATAAAATAT
22788606 ATTGGTTTAGAAAAATAATGTATAAAATATCAAATATGTAAAAGAATTTA
1 ATTGGTTTAGAAAAATAATGTATAAAATATCAAATATGTAAAAGAATTTA
*
22788656 ATTGGTTTAGAATAATAATGTATAAAATATCAAATATGTAAAAGAATTTA
1 ATTGGTTTAGAAAAATAATGTATAAAATATCAAATATGTAAAAGAATTTA
22788706 TATTTATAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.51, C:0.02, G:0.12, T:0.35
Consensus pattern (50 bp):
ATTGGTTTAGAAAAATAATGTATAAAATATCAAATATGTAAAAGAATTTA
Found at i:22789132 original size:22 final size:21
Alignment explanation
Indices: 22789097--22789172 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
22789087 AAAAGGTATC
* *
22789097 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
22789118 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
22789141 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
22789160 TGC-AATCATATCT
1 TACAAATCATATCT
22789173 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:22789189 original size:35 final size:37
Alignment explanation
Indices: 22789126--22789204 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
22789116 ATTACAAAAT
22789126 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
22789162 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
22789197 CATATCAT
1 CATATCAT
22789205 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:22789202 original size:14 final size:15
Alignment explanation
Indices: 22789147--22789202 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
22789137 AGATTGCATA
22789147 TCATATCTAAGATTG
1 TCATATCTAAGATTG
22789162 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
22789180 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
22789197 -CATATC
1 TCATATC
22789203 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:22789212 original size:17 final size:19
Alignment explanation
Indices: 22789133--22789204 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
22789123 AATCATATCT
22789133 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22789152 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
22789170 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
22789187 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
22789205 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22789761 original size:87 final size:87
Alignment explanation
Indices: 22789596--22789761 Score: 192
Period size: 87 Copynumber: 1.9 Consensus size: 87
22789586 GACAATACAG
* * *
22789596 GGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACGTAAAAGCCAAATCTGCTGTGTCTTT
1 GGATGCCAAATCATCTTAGATCTACTTCAGTGAAAACACGTAAAAGCCAAATCTGCTATGTCTTC
* *
22789661 GATTTGCTCCTTGTGAACACAA
66 AATCTGCTCCTTGTGAACACAA
* * * * * *
22789683 GGATGCCAAATCATCTTGGATCTGCTTCAGT-AAAATCATC-TGAAGGTCAGATCTGCTATGTCT
1 GGATGCCAAATCATCTTAGATCTACTTCAGTGAAAA-CA-CGTAAAAGCCAAATCTGCTATGTCT
*
22789746 TCAATCTGCTTCTTGT
64 TCAATCTGCTCCTTGT
22789762 AAACTTATGA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
86 3 0.05
87 61 0.94
88 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (87 bp):
GGATGCCAAATCATCTTAGATCTACTTCAGTGAAAACACGTAAAAGCCAAATCTGCTATGTCTTC
AATCTGCTCCTTGTGAACACAA
Found at i:22789949 original size:261 final size:261
Alignment explanation
Indices: 22789485--22789974 Score: 736
Period size: 261 Copynumber: 1.9 Consensus size: 261
22789475 ATCATGGTCC
* *
22789485 TCAATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACA
1 TCAATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTACTCTCCGCCGAACA
* *
22789550 CAGAGACGCCAAATCTGCTTCTTCGATTTGTTTTCTGACAATACAGGGATGCCAAATCATCTTAG
66 CAGAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG
* * * * *
22789615 ATCTACTTCAGTGTAAACACGTAAAAGCCAAATCTGCTGTGTCTTTGATTTGCTCCTTGTGAACA
131 ATCTACTTCAGCGTAAACACGGAAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAACA
*
22789680 CAAGGATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTC
196 CAAGGATGCCAAACCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTC
22789745 T
261 T
* * * * *
22789746 TCAATCTGCTTC-TTGTAAACTTATGACTGTCCTGTTGATATCTTCGATCTACTCTCCGCCGAAT
1 TCAATCTGC-TCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTACTCTCCGCCGAAC
*
22789810 ACAGAGACGCCAAATCTGTTTCTTCGATTTGTTCTCT-AGCAATACAGAGATGCCAAATCATCTT
65 ACAGAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTGA-CAATACAGAGATGCCAAATCATCTT
* * * *
22789874 AGATTTGCTTCAGCGTAAGCACGCGAAAA-CCAAATCAGCTATGTCTTCGATTTGTTCCTTGT-A
129 AGATCTACTTCAGCGTAAACACG-GAAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGA
22789937 AGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
193 A-CACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
22789975 TATCTGAAGC
Statistics
Matches: 205, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
260 3 0.01
261 196 0.96
262 6 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (261 bp):
TCAATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTACTCTCCGCCGAACA
CAGAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG
ATCTACTTCAGCGTAAACACGGAAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAACA
CAAGGATGCCAAACCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTC
T
Found at i:22790174 original size:200 final size:202
Alignment explanation
Indices: 22789831--22790371 Score: 935
Period size: 205 Copynumber: 2.7 Consensus size: 202
22789821 AAATCTGTTT
22789831 CTTCGATTTGTTCTCT-AGCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
1 CTTCGATTTGTTCTCTGA-CAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
22789895 CGCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
22789960 TGGATCTGCTTCAGT-T-ATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
130 TGGATCTGCTTCAGTATAATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
*
22790023 ATGCCAGA
195 ATGCCAAA
*
22790031 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
22790096 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
22790161 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTAT--A-ATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
22790226 AGATGCCAAA
193 AGATGCCAAA
* *
22790236 ATTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
22790301 GCAAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
22790366 GGATCT
131 GGATCT
22790372 TACTTCAGCT
Statistics
Matches: 322, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
200 139 0.43
201 2 0.01
205 181 0.56
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (202 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAATCTGAAGCTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGA
TGCCAAA
Found at i:22791954 original size:10 final size:10
Alignment explanation
Indices: 22791939--22791963 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22791929 CCATAATTTA
22791939 TGATACAAAT
1 TGATACAAAT
22791949 TGATACAAAT
1 TGATACAAAT
22791959 TGATA
1 TGATA
22791964 ATGGGTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (10 bp):
TGATACAAAT
Found at i:22791995 original size:26 final size:26
Alignment explanation
Indices: 22791959--22792014 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
22791949 TGATACAAAT
22791959 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22791985 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
22792011 TGAT
1 TGAT
22792015 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.