Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 80 of 141
Found at i:23047978 original size:11 final size:11
Alignment explanation
Indices: 23047962--23047988 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23047952 AAGTTTTTTT
23047962 AAAAAAAGGAA
1 AAAAAAAGGAA
23047973 AAAAAAAGGAA
1 AAAAAAAGGAA
23047984 AAAAA
1 AAAAA
23047989 TATATGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAGGAA
Found at i:23048172 original size:3 final size:3
Alignment explanation
Indices: 23048160--23048204 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
23048150 CATGAATGTT
23048160 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23048205 ACAGTTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:23048272 original size:29 final size:29
Alignment explanation
Indices: 23048209--23048274 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
23048199 TAATAAACAG
23048209 TTAAAAAAAAGGTCAAATTGAGCTAAAAT
1 TTAAAAAAAAGGTCAAATTGAGCTAAAAT
** *
23048238 GGAAAAAAAAGGT-AAATTCGAAG-TAAATT
1 TTAAAAAAAAGGTCAAATT-G-AGCTAAAAT
23048267 TTAAAAAA
1 TTAAAAAA
23048275 TAGGATCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 5 0.17
29 23 0.77
30 2 0.07
ACGTcount: A:0.58, C:0.05, G:0.15, T:0.23
Consensus pattern (29 bp):
TTAAAAAAAAGGTCAAATTGAGCTAAAAT
Found at i:23048565 original size:22 final size:20
Alignment explanation
Indices: 23048525--23048566 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
23048515 AAAAAAAACC
*
23048525 AAAATAAAAGAAAAGAGAAA
1 AAAATAAAAGAAAACAGAAA
23048545 AAAATAGAAAGAAAAACAGAAA
1 AAAATA-AAAG-AAAACAGAAA
23048567 TCTAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 4 0.21
22 9 0.47
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAATAAAAGAAAACAGAAA
Found at i:23051707 original size:31 final size:31
Alignment explanation
Indices: 23051672--23051730 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
23051662 TGGTTAGCAT
* *
23051672 TAAAATTTACAAATTTGAAAAGTATAAGGAC
1 TAAAATTGACAAATTCGAAAAGTATAAGGAC
23051703 TAAAATTGACAAATTCGAAAAGTATAAG
1 TAAAATTGACAAATTCGAAAAGTATAAG
23051731 AATTAAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.27
Consensus pattern (31 bp):
TAAAATTGACAAATTCGAAAAGTATAAGGAC
Found at i:23053242 original size:5 final size:6
Alignment explanation
Indices: 23053227--23053256 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
23053217 ACACTACATC
*
23053227 AAAAAT AAAAAT AAAAAT AAAAAG AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
23053257 TGAGACTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:23063336 original size:30 final size:32
Alignment explanation
Indices: 23063276--23063339 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
23063266 CACTTATTTT
23063276 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
23063309 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
23063340 AATGACATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:23075447 original size:25 final size:25
Alignment explanation
Indices: 23075413--23075460 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23075403 TTGAGCTATA
* *
23075413 AACGGTAAGCTCCTCCGAGCTGAAT
1 AACGGCAAGCTCATCCGAGCTGAAT
*
23075438 AACGGCAAGCTCATGCGAGCTGA
1 AACGGCAAGCTCATCCGAGCTGA
23075461 GTATCAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.17
Consensus pattern (25 bp):
AACGGCAAGCTCATCCGAGCTGAAT
Found at i:23075472 original size:25 final size:25
Alignment explanation
Indices: 23075417--23075483 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 25
23075407 GCTATAAACG
* * *
23075417 GTAAGCTCCTCCGAGCTGAATAACG
1 GTAAGCTCATACGAGCTGAATAACA
* * * *
23075442 GCAAGCTCATGCGAGCTGAGTATCA
1 GTAAGCTCATACGAGCTGAATAACA
*
23075467 GTAAGCTTATACGAGCT
1 GTAAGCTCATACGAGCT
23075484 AAAATCGGTA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATAACA
Found at i:23079731 original size:49 final size:49
Alignment explanation
Indices: 23079659--23079758 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
23079649 GTCTCGCACC
23079659 TTCATGACGAGCCCAGCTCATAATATGGTTTCCAGACTAAGTTTTTGTT
1 TTCATGACGAGCCCAGCTCATAATATGGTTTCCAGACTAAGTTTTTGTT
23079708 TTCATGACGAGCCCAGCTCATAATATGGTTTCCAGACTAAGTTTTTGTT
1 TTCATGACGAGCCCAGCTCATAATATGGTTTCCAGACTAAGTTTTTGTT
23079757 TT
1 TT
23079759 AACTCTATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (49 bp):
TTCATGACGAGCCCAGCTCATAATATGGTTTCCAGACTAAGTTTTTGTT
Found at i:23085385 original size:26 final size:26
Alignment explanation
Indices: 23085349--23085399 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
23085339 ATTTTATTTG
*
23085349 ATCTTTTAAGGACTCCTGCATCTCTT
1 ATCTATTAAGGACTCCTGCATCTCTT
23085375 ATCTATTAAGGACTCCTGCATCTCT
1 ATCTATTAAGGACTCCTGCATCTCT
23085400 CCTCTCTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (26 bp):
ATCTATTAAGGACTCCTGCATCTCTT
Found at i:23087907 original size:12 final size:12
Alignment explanation
Indices: 23087890--23087915 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23087880 AATCGAAGAT
23087890 ATGCTCTCCATA
1 ATGCTCTCCATA
23087902 ATGCTCTCCATA
1 ATGCTCTCCATA
23087914 AT
1 AT
23087916 CAACAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.35
Consensus pattern (12 bp):
ATGCTCTCCATA
Found at i:23096753 original size:13 final size:13
Alignment explanation
Indices: 23096735--23096776 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
23096725 AGATCGTTCT
23096735 TAAATATTATCAC
1 TAAATATTATCAC
*
23096748 TAAATA--AT-TC
1 TAAATATTATCAC
23096758 TAAATATTATCAC
1 TAAATATTATCAC
23096771 TAAATA
1 TAAATA
23096777 ATTTGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:23096785 original size:23 final size:23
Alignment explanation
Indices: 23096735--23096779 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
23096725 AGATCGTTCT
23096735 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
23096758 TAAATATTATCACTAAATAATT
1 TAAATATTATCACTAAATAATT
23096780 TGAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:23100188 original size:9 final size:8
Alignment explanation
Indices: 23100173--23100197 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23100163 TGCATCCCAT
23100173 TAAAAAAA
1 TAAAAAAA
23100181 TAAAAAAA
1 TAAAAAAA
23100189 TAAAAAAA
1 TAAAAAAA
23100197 T
1 T
23100198 TCAAACCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:23102121 original size:6 final size:6
Alignment explanation
Indices: 23102110--23102134 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23102100 AGGCAAGAAG
23102110 ACCATC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC A
23102135 ATCACCCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCATC
Found at i:23118025 original size:11 final size:11
Alignment explanation
Indices: 23118005--23118119 Score: 67
Period size: 11 Copynumber: 10.3 Consensus size: 11
23117995 ACCCCGACCC
23118005 ATATTAAATAT
1 ATATTAAATAT
*
23118016 ATATTTAATAT
1 ATATTAAATAT
*
23118027 ATATAAAATAT
1 ATATTAAATAT
23118038 ATTTGATTAAA-A-
1 A--T-ATTAAATAT
**
23118050 ATAAAAAATAT
1 ATATTAAATAT
*
23118061 ATATTTAATAT
1 ATATTAAATAT
*
23118072 ATATAAAATAT
1 ATATTAAATAT
23118083 ATTTGATTAAA-A-
1 A--T-ATTAAATAT
**
23118095 ATAAAAAATAT
1 ATATTAAATAT
*
23118106 ATATTTAATAT
1 ATATTAAATAT
23118117 ATA
1 ATA
23118120 ATTCGGGTCG
Statistics
Matches: 77, Mismatches: 17, Indels: 20
0.68 0.15 0.18
Matches are distributed among these distances:
9 8 0.10
10 4 0.05
11 49 0.64
12 2 0.03
13 4 0.05
14 10 0.13
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:23118061 original size:23 final size:23
Alignment explanation
Indices: 23118031--23118107 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
23118021 TAATATATAT
23118031 AAAATATATTTGATTAAAAATAA
1 AAAATATATTTGATTAAAAATAA
* * *
23118054 AAAATATATAT--TTAATATATAT
1 AAAATATATTTGATTAA-AAATAA
23118076 AAAATATATTTGATTAAAAATAA
1 AAAATATATTTGATTAAAAATAA
23118099 AAAATATAT
1 AAAATATAT
23118108 ATTTAATATA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 4 0.09
22 14 0.31
23 23 0.51
24 4 0.09
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (23 bp):
AAAATATATTTGATTAAAAATAA
Found at i:23118120 original size:43 final size:45
Alignment explanation
Indices: 23118010--23118119 Score: 220
Period size: 45 Copynumber: 2.4 Consensus size: 45
23118000 GACCCATATT
23118010 AAATATATATTTAATATATATAAAATATATTTGATTAAAAATAAA
1 AAATATATATTTAATATATATAAAATATATTTGATTAAAAATAAA
23118055 AAATATATATTTAATATATATAAAATATATTTGATTAAAAATAAA
1 AAATATATATTTAATATATATAAAATATATTTGATTAAAAATAAA
23118100 AAATATATATTTAATATATA
1 AAATATATATTTAATATATA
23118120 ATTCGGGTCG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (45 bp):
AAATATATATTTAATATATATAAAATATATTTGATTAAAAATAAA
Found at i:23121145 original size:18 final size:18
Alignment explanation
Indices: 23121122--23121167 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
23121112 ATTATGCCAG
* *
23121122 TATGTATCCTAGCCCTTA
1 TATGTATCCTAACACTTA
23121140 TATGTATCCTAACACTTA
1 TATGTATCCTAACACTTA
*
23121158 TATGTTTCCT
1 TATGTATCCT
23121168 TTTTCCAGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (18 bp):
TATGTATCCTAACACTTA
Found at i:23125455 original size:21 final size:21
Alignment explanation
Indices: 23125431--23125495 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
23125421 AACAGAAACC
23125431 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * *
23125452 CATAAGAGTTGAACGGAAACC
1 CATAAGGGTTGAACGGAAGCT
*
23125473 CATAAGGG-TGAAACTGAAGCT
1 CATAAGGGTTG-AACGGAAGCT
23125494 CA
1 CA
23125496 AAAGAGCTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 2 0.06
21 34 0.94
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
CATAAGGGTTGAACGGAAGCT
Found at i:23125457 original size:42 final size:42
Alignment explanation
Indices: 23125410--23125548 Score: 156
Period size: 42 Copynumber: 3.3 Consensus size: 42
23125400 CACAGAAGAA
* *
23125410 CATAAGTGCTAAACAGAAACCCATAAGGGTTGAACGGAAGCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTGAACTGAAGCT
* * *
23125452 CATAAGAGTTGAACGGAAACCCATAAGGG-TGAAACTGAAGCT
1 CATAAGAGCTAAACAGAAACCCATAAGGGTTG-AACTGAAGCT
* * * *
23125494 CAAAAGAGCTGAACAAAAACCCA-ATAGGGTTAAACTGAAGCT
1 CATAAGAGCTAAACAGAAACCCATA-AGGGTTGAACTGAAGCT
*
23125536 CATGAGAGCTAAA
1 CATAAGAGCTAAA
23125549 TGGAAAGTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
41 3 0.04
42 77 0.95
43 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (42 bp):
CATAAGAGCTAAACAGAAACCCATAAGGGTTGAACTGAAGCT
Found at i:23127702 original size:127 final size:126
Alignment explanation
Indices: 23127432--23127958 Score: 696
Period size: 126 Copynumber: 4.2 Consensus size: 126
23127422 TAAGGCCAAG
* * * * * *
23127432 CAGGAACTACTTTAGAAAAAGTGCGTCCACCTGGAAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
23127497 ATCCTGCTTGAAGCGTTTTTAACACTATTTCTTCAGAACCATCTTCTCTAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
* * * *
23127558 CAGGATCTACTGTAGAAAAAGAGCATTCATGTAGG-AGCTTTTTTCAGTAATTTTGTTGACAGTG
1 CAGGAACTACTGTAGAAAAAGAGCATCCACGT-GGAAGCTTTTTTCAGTAATTTTGCTGACAGTG
* * *
23127622 TATCCTGTTTGAAGCGTTTTTGACACTATTTTTTTCAGAACCATCTTCTCTAAATTATTTTTT
65 CATCCTGCTTGAAGCGTTTTTGACACTA-TTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
*
23127685 CAGGAACTACTGTAGAAAAAGAGCATCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* **
23127750 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
* * * * * * * *
23127811 CAAGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTACTTTTGCTGATAGTAC
1 CAGGAACTACTGTAGAAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * * ** *
23127876 ATCCTGTTTAAAGCGTGTTTGACATTATCTTTTCAGAAGTATCTTCTCAAAATTAATTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
*
23127937 CAGAAACTACTGTAGAAAAAGA
1 CAGGAACTACTGTAGAAAAAGA
23127959 AAACAAAATC
Statistics
Matches: 352, Mismatches: 46, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
126 235 0.67
127 117 0.33
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
Found at i:23127882 original size:253 final size:252
Alignment explanation
Indices: 23127432--23127958 Score: 739
Period size: 253 Copynumber: 2.1 Consensus size: 252
23127422 TAAGGCCAAG
* * * * *
23127432 CAGGAACTACTTTAGAAAAAGTGCGTCCACCTGGAAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCATCCACATGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * *
23127497 ATCCTGCTTGAAGCGTTTTTAACACTATTTCTTCAGAACCATCTTCTCTAAATTATTTTTTCAGG
66 ATCCTGCTTGAAGCGTTTTTAACACTATTTCTTCAAAACCATCTTCTCAAAATTATTTTTTCAAG
* * * * * **
23127562 ATCTACTGTAGAAAAAGAGCATTCATGTAGGAGCTTTTTTCAGTAATTTTGTTGACAGTGTATCC
131 AACTACTATAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATCC
* * * * *
23127627 TGTTTGAAGCGTTTTTGACACTATTTTTTTCAGAACCATCTTCTCTAAATTATTTTTT
196 TGTTTAAAGCGTGTTTGACACTA-TCTTTTCAGAACCATCTTCTCAAAATTAATTTTT
*
23127685 CAGGAACTACTGTAGAAAAAGAGCATCCACATGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCATCCACATGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * **
23127750 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATTATTTTTTCAAG
66 ATCCTGCTTGAAGCGTTTTTAACACTATTTCTTCAAAACCATCTTCTCAAAATTATTTTTTCAAG
* * * * *
23127815 AACTACTATAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTACTTTTGCTGATAGTACATCC
131 AACTACTATAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATCC
* **
23127880 TGTTTAAAGCGTGTTTGACATTATCTTTTCAGAAGTATCTTCTCAAAATTAATTTTT
196 TGTTTAAAGCGTGTTTGACACTATCTTTTCAGAACCATCTTCTCAAAATTAATTTTT
*
23127937 CAGAAACTACTGTAGAAAAAGA
1 CAGGAACTACTGTAGAAAAAGA
23127959 AAACAAAATC
Statistics
Matches: 240, Mismatches: 34, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
252 50 0.21
253 190 0.79
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (252 bp):
CAGGAACTACTGTAGAAAAAGAGCATCCACATGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGC
ATCCTGCTTGAAGCGTTTTTAACACTATTTCTTCAAAACCATCTTCTCAAAATTATTTTTTCAAG
AACTACTATAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATCC
TGTTTAAAGCGTGTTTGACACTATCTTTTCAGAACCATCTTCTCAAAATTAATTTTT
Found at i:23128108 original size:34 final size:34
Alignment explanation
Indices: 23128058--23128175 Score: 148
Period size: 34 Copynumber: 3.5 Consensus size: 34
23128048 TTTTTTTAAA
*
23128058 CCTAAACCCTAATTTAATTAATTTTCTTAAAAAC
1 CCTAAACCTTAATTTAATTAATTTTCTTAAAAAC
* * *
23128092 CCTAAACCTTATTTTAATTAATTTACTTAAAACC
1 CCTAAACCTTAATTTAATTAATTTTCTTAAAAAC
* *
23128126 CCTAAAACTTAATTTAATTAAATTTT-TTAAAAAT
1 CCTAAACCTTAATTTAATT-AATTTTCTTAAAAAC
* *
23128160 TCTAAACCCTAATTTA
1 CCTAAACCTTAATTTA
23128176 TTTTTTCAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 66 0.93
35 5 0.07
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.41
Consensus pattern (34 bp):
CCTAAACCTTAATTTAATTAATTTTCTTAAAAAC
Found at i:23128729 original size:28 final size:26
Alignment explanation
Indices: 23128689--23128741 Score: 61
Period size: 28 Copynumber: 2.0 Consensus size: 26
23128679 AAATAATTTA
*
23128689 TATATTTTATAAAGTTATAACAAAAAAG
1 TATATTATATAAA-TTATAA-AAAAAAG
* *
23128717 TATATTATGTAAATTCTAAAAAAAA
1 TATATTATATAAATTATAAAAAAAA
23128742 TTCAAATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 6 0.27
27 5 0.23
28 11 0.50
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.36
Consensus pattern (26 bp):
TATATTATATAAATTATAAAAAAAAG
Found at i:23128966 original size:16 final size:16
Alignment explanation
Indices: 23128942--23128972 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23128932 ATCTTAACTT
23128942 CTTTATAAAAAAATAG
1 CTTTATAAAAAAATAG
*
23128958 CTTTCTAAAAAAATA
1 CTTTATAAAAAAATA
23128973 TATATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.32
Consensus pattern (16 bp):
CTTTATAAAAAAATAG
Found at i:23130180 original size:2 final size:2
Alignment explanation
Indices: 23130173--23130205 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23130163 ACATCACCAA
23130173 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
23130206 CCTTGATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:23149734 original size:13 final size:13
Alignment explanation
Indices: 23149716--23149741 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23149706 ATTTTCTCTC
23149716 TTTTTTATTTTTA
1 TTTTTTATTTTTA
23149729 TTTTTTATTTTTA
1 TTTTTTATTTTTA
23149742 GGGGTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:23150311 original size:6 final size:5
Alignment explanation
Indices: 23150278--23150309 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
23150268 ATATATAGAT
23150278 TTTTA TTTTA TTTTA TTTTA TTTTA TCTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T
23150310 CTATATCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:23153790 original size:72 final size:72
Alignment explanation
Indices: 23153702--23153842 Score: 221
Period size: 72 Copynumber: 2.0 Consensus size: 72
23153692 TTTGTTGTAA
* *
23153702 TGTTAAGGTAAGTTAAGTAAATTTCATATGGACTTAC-TAAGCGTTTAATATGTTTACTCCGTTG
1 TGTTAAGGTAAGTTAAGTAAATTTCATATGGACTTACTTAA-CATTCAATATGTTTACTCCGTTG
23153766 CCTCCATT
65 CCTCCATT
* * *
23153774 TGTTAAGGTAAGTTAAGTAAATTTCATGTGGATTTACTTAACATTCAATATGTTTACTCTGTTGC
1 TGTTAAGGTAAGTTAAGTAAATTTCATATGGACTTACTTAACATTCAATATGTTTACTCCGTTGC
23153839 CTCC
66 CTCC
23153843 CTTAGTTCCT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 60 0.95
73 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (72 bp):
TGTTAAGGTAAGTTAAGTAAATTTCATATGGACTTACTTAACATTCAATATGTTTACTCCGTTGC
CTCCATT
Found at i:23167218 original size:21 final size:22
Alignment explanation
Indices: 23167192--23167238 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
23167182 CTCTGCTCAA
*
23167192 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
23167213 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
23167235 ACTC
1 ACTC
23167239 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:23173520 original size:75 final size:75
Alignment explanation
Indices: 23173427--23173575 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
23173417 GCTCGAAAAG
*
23173427 GGTTCAAAATTTCTCCATATCTCCACATGCAGATGGAAAGCTCGAAATCAGCAATCATGTCAGAT
1 GGTTCAAAATTTCTCCATATCTCCACATGCAGATGGAAAGCTCGAAATCAGCAATCATGGCAGAT
23173492 AAGGGGCTTA
66 AAGGGGCTTA
23173502 GGTTCAAAATTTCTCCATATCTCCACATGCAGATGGAAAGCTCGAAATCAGCAATCATGGCAGAT
1 GGTTCAAAATTTCTCCATATCTCCACATGCAGATGGAAAGCTCGAAATCAGCAATCATGGCAGAT
23173567 AAGGGGCTT
66 AAGGGGCTT
23173576 CGAGAAGTCT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (75 bp):
GGTTCAAAATTTCTCCATATCTCCACATGCAGATGGAAAGCTCGAAATCAGCAATCATGGCAGAT
AAGGGGCTTA
Found at i:23180679 original size:20 final size:20
Alignment explanation
Indices: 23180654--23180693 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
23180644 AATATTTTCC
*
23180654 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
23180674 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
23180694 TCATTTTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:23183564 original size:17 final size:17
Alignment explanation
Indices: 23183539--23183576 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 17
23183529 CATCATTTTA
23183539 TTTAGAATTTTAAAATAT
1 TTTAGAA-TTTAAAATAT
23183557 TTTA-AATTTAAAATAT
1 TTTAGAATTTAAAATAT
23183573 TTTA
1 TTTA
23183577 TTATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 14 0.70
17 2 0.10
18 4 0.20
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTAGAATTTAAAATAT
Found at i:23196182 original size:427 final size:427
Alignment explanation
Indices: 23195387--23196240 Score: 1708
Period size: 427 Copynumber: 2.0 Consensus size: 427
23195377 GAGAATTATA
23195387 TATTTCAAAATAATTATAATTTAAACTGCAATTATTATTAAAAATATTGTGCTAATTTTAAAATA
1 TATTTCAAAATAATTATAATTTAAACTGCAATTATTATTAAAAATATTGTGCTAATTTTAAAATA
23195452 GAATTGTTATTTAAATAGAACTCTAAGCATAAAATATAGAAAAAAGTCAAAAAAATTGTGATAAT
66 GAATTGTTATTTAAATAGAACTCTAAGCATAAAATATAGAAAAAAGTCAAAAAAATTGTGATAAT
23195517 TATAATTATAATTTATTGTTATTAGTTAAAAAATTTGACGATGCTACTTTTATTAAAGTAAAGTA
131 TATAATTATAATTTATTGTTATTAGTTAAAAAATTTGACGATGCTACTTTTATTAAAGTAAAGTA
23195582 GAGTTATTACTTAATTAGAAGTCTAAGTATCTTAATTATCACTTAACTAATAATAGATTTAATTA
196 GAGTTATTACTTAATTAGAAGTCTAAGTATCTTAATTATCACTTAACTAATAATAGATTTAATTA
23195647 AAAAAACTAATAGAAATACCAGACATGCTTTATTGAAAAACCAAAAGTAATAATAAAACTGATCA
261 AAAAAACTAATAGAAATACCAGACATGCTTTATTGAAAAACCAAAAGTAATAATAAAACTGATCA
23195712 TCCATAAATGTAACCCAAATAGAAAAAATAAATTATAATTATAAACTATTCTCATCAAATTTAGT
326 TCCATAAATGTAACCCAAATAGAAAAAATAAATTATAATTATAAACTATTCTCATCAAATTTAGT
23195777 AAATTTTTGTAGTTAATAAATTATTCTCATCAAATTC
391 AAATTTTTGTAGTTAATAAATTATTCTCATCAAATTC
23195814 TATTTCAAAATAATTATAATTTAAACTGCAATTATTATTAAAAATATTGTGCTAATTTTAAAATA
1 TATTTCAAAATAATTATAATTTAAACTGCAATTATTATTAAAAATATTGTGCTAATTTTAAAATA
23195879 GAATTGTTATTTAAATAGAACTCTAAGCATAAAATATAGAAAAAAGTCAAAAAAATTGTGATAAT
66 GAATTGTTATTTAAATAGAACTCTAAGCATAAAATATAGAAAAAAGTCAAAAAAATTGTGATAAT
23195944 TATAATTATAATTTATTGTTATTAGTTAAAAAATTTGACGATGCTACTTTTATTAAAGTAAAGTA
131 TATAATTATAATTTATTGTTATTAGTTAAAAAATTTGACGATGCTACTTTTATTAAAGTAAAGTA
23196009 GAGTTATTACTTAATTAGAAGTCTAAGTATCTTAATTATCACTTAACTAATAATAGATTTAATTA
196 GAGTTATTACTTAATTAGAAGTCTAAGTATCTTAATTATCACTTAACTAATAATAGATTTAATTA
23196074 AAAAAACTAATAGAAATACCAGACATGCTTTATTGAAAAACCAAAAGTAATAATAAAACTGATCA
261 AAAAAACTAATAGAAATACCAGACATGCTTTATTGAAAAACCAAAAGTAATAATAAAACTGATCA
23196139 TCCATAAATGTAACCCAAATAGAAAAAATAAATTATAATTATAAACTATTCTCATCAAATTTAGT
326 TCCATAAATGTAACCCAAATAGAAAAAATAAATTATAATTATAAACTATTCTCATCAAATTTAGT
23196204 AAATTTTTGTAGTTAATAAATTATTCTCATCAAATTC
391 AAATTTTTGTAGTTAATAAATTATTCTCATCAAATTC
23196241 ACATAAAATA
Statistics
Matches: 427, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
427 427 1.00
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.36
Consensus pattern (427 bp):
TATTTCAAAATAATTATAATTTAAACTGCAATTATTATTAAAAATATTGTGCTAATTTTAAAATA
GAATTGTTATTTAAATAGAACTCTAAGCATAAAATATAGAAAAAAGTCAAAAAAATTGTGATAAT
TATAATTATAATTTATTGTTATTAGTTAAAAAATTTGACGATGCTACTTTTATTAAAGTAAAGTA
GAGTTATTACTTAATTAGAAGTCTAAGTATCTTAATTATCACTTAACTAATAATAGATTTAATTA
AAAAAACTAATAGAAATACCAGACATGCTTTATTGAAAAACCAAAAGTAATAATAAAACTGATCA
TCCATAAATGTAACCCAAATAGAAAAAATAAATTATAATTATAAACTATTCTCATCAAATTTAGT
AAATTTTTGTAGTTAATAAATTATTCTCATCAAATTC
Found at i:23198486 original size:2 final size:2
Alignment explanation
Indices: 23198479--23198505 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23198469 AACTAGAACA
23198479 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
23198506 ATCTCAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23201874 original size:3 final size:3
Alignment explanation
Indices: 23201866--23201897 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
23201856 AGTATATATG
*
23201866 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23201898 GCTTTGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:23206395 original size:11 final size:11
Alignment explanation
Indices: 23206379--23206415 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
23206369 CCACCCCACA
23206379 CATATACATAT
1 CATATACATAT
23206390 CATATACATAT
1 CATATACATAT
**
23206401 TTTATACATAT
1 CATATACATAT
23206412 CATA
1 CATA
23206416 ATCATAAACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (11 bp):
CATATACATAT
Found at i:23207693 original size:32 final size:32
Alignment explanation
Indices: 23207656--23207720 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
23207646 GAAAATCTGA
23207656 AACTTAGGAATCAAACTTGGGTTCTAAAGCAT
1 AACTTAGGAATCAAACTTGGGTTCTAAAGCAT
23207688 AACTTAGGAATCAAACTTGGGTTCTAAAGCAT
1 AACTTAGGAATCAAACTTGGGTTCTAAAGCAT
23207720 A
1 A
23207721 CTCCCAAGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (32 bp):
AACTTAGGAATCAAACTTGGGTTCTAAAGCAT
Found at i:23212201 original size:36 final size:39
Alignment explanation
Indices: 23212133--23212206 Score: 93
Period size: 36 Copynumber: 2.0 Consensus size: 39
23212123 GCCCCTGGTT
*
23212133 GTTACCATTGTTAAAATTAATCTATTAGATTTA-TTGGA
1 GTTACCATTGTTAAAATTAATATATTAGATTTACTTGGA
*
23212171 GTTA-CATT-TTAAAATT-ATATATATATATTTACTTGG
1 GTTACCATTGTTAAAATTAATATAT-TAGATTTACTTGG
23212207 TAGTCATGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
35 5 0.16
36 15 0.47
37 8 0.25
38 4 0.12
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (39 bp):
GTTACCATTGTTAAAATTAATATATTAGATTTACTTGGA
Found at i:23218300 original size:11 final size:11
Alignment explanation
Indices: 23218284--23218310 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23218274 TAGAAATTAG
23218284 TTTGTGAAACT
1 TTTGTGAAACT
23218295 TTTGTGAAACT
1 TTTGTGAAACT
23218306 TTTGT
1 TTTGT
23218311 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:23219843 original size:93 final size:92
Alignment explanation
Indices: 23219711--23219905 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
23219701 TTGATTTTAG
* *
23219711 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
23219775 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
23219803 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
23219868 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
23219896 CAAATTCATA
1 TAAATTCATA
23219906 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:23219953 original size:48 final size:52
Alignment explanation
Indices: 23219883--23219981 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
23219873 AATAATTATT
23219883 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
23219931 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
23219982 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:23219963 original size:17 final size:17
Alignment explanation
Indices: 23219938--23219971 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23219928 ATAATTTTAA
*
23219938 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
23219955 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
23219972 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:23219988 original size:17 final size:16
Alignment explanation
Indices: 23219943--23219990 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
23219933 TTTAAATTTT
23219943 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
23219960 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
23219974 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
23219991 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:23220059 original size:18 final size:17
Alignment explanation
Indices: 23220031--23220065 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23220021 ATTATTAAGA
*
23220031 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23220048 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23220066 TTATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23220065 original size:16 final size:17
Alignment explanation
Indices: 23220031--23220072 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
23220021 ATTATTAAGA
23220031 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
23220048 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
23220064 ATTTATAAT
1 ATTT-TAAT
23220073 AATTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:23220101 original size:143 final size:143
Alignment explanation
Indices: 23220011--23220289 Score: 380
Period size: 143 Copynumber: 1.9 Consensus size: 143
23220001 AAATTCATAT
* *
23220011 AAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT-TATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
* * *
23220075 TTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAAAATA
66 TTATGTTTAAATATGATTAAATTATTTA-TATTGATAATAATATTATTAAAATTCAAATAAAATA
23220140 ATTTACCAAAACAA
130 ATTTACCAAAACAA
**** *
23220154 ATTTCTGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
1 AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
* *
23220219 TTATGTTTAAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAA
66 TTATGTTTAAATATGATTAAATTATTTA-TATTGATAAT-AAT-A--TTATTAAAATTCAAATAA
23220284 CAATAA
126 -AATAA
23220290 CAATAATCAT
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
143 50 0.42
144 44 0.37
145 3 0.03
148 18 0.15
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (143 bp):
AAGAATACTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAA
TTATGTTTAAATATGATTAAATTATTTATATTGATAATAATATTATTAAAATTCAAATAAAATAA
TTTACCAAAACAA
Found at i:23220131 original size:77 final size:77
Alignment explanation
Indices: 23220050--23220288 Score: 178
Period size: 77 Copynumber: 3.2 Consensus size: 77
23220040 AATTATATAT
*
23220050 TTTAATTAAAATATATTTATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTA
1 TTTAAATAAAATATATTTATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTA
23220115 ATCTTATTAAAA
66 ATCTTATTAAAA
* * ** * * * ** *
23220127 TTTAAATAAAATA-ATTTACCAA-AA-CA-AATT---TCTG-CT-AATTATTAAGAATT-TTATT
1 TTTAAATAAAATATATTTA-TAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATT
* * *
23220182 AA-ATTA-TATAT
65 AATCTTATTAAAA
* * *
23220193 TTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTATTTTTGATAAT
1 TTTAAATAAAATATATT-TATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGAT-AT
23220258 AAATAATCTTATTAAAA
64 ---TAATCTTATTAAAA
23220275 TTTAAATAACAATA
1 TTTAAATAA-AATA
23220289 ACAATAATCA
Statistics
Matches: 112, Mismatches: 31, Indels: 32
0.64 0.18 0.18
Matches are distributed among these distances:
66 15 0.13
67 8 0.07
68 9 0.08
69 12 0.11
70 3 0.03
71 3 0.03
73 3 0.03
74 3 0.03
75 11 0.10
76 8 0.07
77 16 0.14
80 3 0.03
81 3 0.03
82 11 0.10
83 4 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (77 bp):
TTTAAATAAAATATATTTATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTA
ATCTTATTAAAA
Found at i:23220202 original size:18 final size:17
Alignment explanation
Indices: 23220174--23220208 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23220164 ATTATTAAGA
*
23220174 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23220191 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23220209 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23220459 original size:45 final size:44
Alignment explanation
Indices: 23220370--23220464 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 44
23220360 TTACACCTCT
* *
23220370 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
* *
23220414 ATTACATTCAACCAAACAGCTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACCTCTATTCC
23220459 ATTACA
1 ATTACA
23220465 CCTCTAATCC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 18 0.39
45 28 0.61
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
Found at i:23220464 original size:16 final size:16
Alignment explanation
Indices: 23220443--23220475 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23220433 CTGATTTGCT
*
23220443 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
23220459 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
23220475 A
1 A
23220476 ACCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:23229233 original size:15 final size:15
Alignment explanation
Indices: 23229213--23229264 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
23229203 ACTACAAAAC
23229213 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
23229228 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
23229247 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
23229262 ATT
1 ATT
23229265 AATATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:23229360 original size:16 final size:14
Alignment explanation
Indices: 23229298--23229363 Score: 64
Period size: 16 Copynumber: 4.6 Consensus size: 14
23229288 ATATGAAGAA
23229298 TATTATTT-AAATT
1 TATTATTTAAAATT
23229311 TATTATTTTTAAAATT
1 TATTA--TTTAAAATT
*
23229327 TATTA-TTAAAATA
1 TATTATTTAAAATT
*
23229340 AATTATGTTAATAATT
1 TATTAT-TTAA-AATT
23229356 TATTATTT
1 TATTATTT
23229364 GATTATATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
13 16 0.37
15 9 0.21
16 18 0.42
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TATTATTTAAAATT
Found at i:23235076 original size:18 final size:18
Alignment explanation
Indices: 23235050--23235084 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23235040 AGGTGCGTTT
*
23235050 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
23235068 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
23235085 TCTTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:23235556 original size:44 final size:45
Alignment explanation
Indices: 23235507--23235593 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 45
23235497 ATATTTTGAA
*
23235507 TATTTTGATATTATTTTATGTAAAAAAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGAGT
* *
23235551 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGA
23235594 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 34 0.87
45 5 0.13
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGAGT
Found at i:23235660 original size:6 final size:6
Alignment explanation
Indices: 23235649--23235676 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23235639 ATTAATTAAA
23235649 AACCCT AACCCT AACCCT AACCCT AACC
1 AACCCT AACCCT AACCCT AACCCT AACC
23235677 TAATTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (6 bp):
AACCCT
Found at i:23235676 original size:41 final size:42
Alignment explanation
Indices: 23235618--23235705 Score: 160
Period size: 41 Copynumber: 2.1 Consensus size: 42
23235608 TAATCTAATT
23235618 TAACCCTAAACCCTAACCTAAATTAATTAAAAACCCTAACCC
1 TAACCCTAAACCCTAACCTAAATTAATTAAAAACCCTAACCC
*
23235660 TAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACCC
1 TAACCCTAAACCCTAACCTAAATTAATTAAAAACCCTAACCC
23235701 TAACC
1 TAACC
23235706 AAATTTAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 38 0.84
42 7 0.16
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (42 bp):
TAACCCTAAACCCTAACCTAAATTAATTAAAAACCCTAACCC
Found at i:23235694 original size:29 final size:29
Alignment explanation
Indices: 23235661--23236097 Score: 612
Period size: 29 Copynumber: 15.4 Consensus size: 29
23235651 CCCTAACCCT
23235661 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
23235690 AACCCTAACCCTAACCAAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
23235719 AACCCTAACTCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
23235748 AACCCTAACCCCTAACCTAAATTAATTATA
1 AACCCTAA-CCCTAACCTAATTTAATTAAA
* *
23235778 AACCCTAACCTTAACGTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
23235807 AACCATAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
23235836 AAACTTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
23235865 AATCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
23235894 AACCCTAACCCCTAACCTAAATTAATTACA
1 AACCCTAA-CCCTAACCTAATTTAATTAAA
*
23235924 AACCTTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
23235953 AACCCTAA-CCT-A---AA-TTAATTACA
1 AACCCTAACCCTAACCTAATTTAATTAAA
23235976 AACCCTAACCCTAACCTAATTTAATT-AA
1 AACCCTAACCCTAACCTAATTTAATTAAA
23236004 AACCCTAACCCTAACCTAATTTAATT--A
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
23236031 AA----AACGCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
23236056 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
23236085 AACCCTAAACCCT
1 AACCCT-AACCCT
23236098 TAACTTAAAA
Statistics
Matches: 363, Mismatches: 30, Indels: 29
0.86 0.07 0.07
Matches are distributed among these distances:
23 35 0.10
24 5 0.01
25 4 0.01
27 4 0.01
28 32 0.09
29 226 0.62
30 57 0.16
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (29 bp):
AACCCTAACCCTAACCTAATTTAATTAAA
Found at i:23235801 original size:117 final size:115
Alignment explanation
Indices: 23235661--23236106 Score: 601
Period size: 117 Copynumber: 3.9 Consensus size: 115
23235651 CCCTAACCCT
*
23235661 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCAAATTTAATTAAAAACCCTA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
*
23235726 ACTCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTATA
66 ACCCTAACCTAATTTAATTAAAAACCCTAA-CCCTAACCTAAATTAATTA-A
* * * * *
23235778 AACCCTAACCTTAACGTAATTTAATTAAAAACCATAACCCTAACCTAATTTAATTAAAAAACTTA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
* * *
23235843 ACCCTAACCTAATTTAATTAAAAATCCTAACCCTAATCTAATTTAATTAAA
66 ACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAATTAATT-AA
* * *
23235894 AACCCTAACCCCTAACCTAAATTAATTACAAACCTTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAA-CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
* *
23235959 AA-CCT-A---AA-TTAATTACAAACCCTAACCCTAACCTAATTTAATTAA
65 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAA
*
23236004 AACCCTAACCCTAACCTAATTTAATT--AAA----AACGCTAACCTAATTTAATTAAAAACCCTA
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
*
23236063 ACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA
66 ACCCTAACCTAATTTAATTAAAAACCCT-AACCC-TAACCTAAA
23236107 AACCCTAACC
Statistics
Matches: 294, Mismatches: 25, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
103 30 0.10
104 3 0.01
105 1 0.00
107 3 0.01
108 2 0.01
109 31 0.11
110 15 0.05
111 39 0.13
112 2 0.01
115 1 0.00
116 28 0.10
117 139 0.47
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (115 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
ACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAA
Found at i:23235835 original size:146 final size:146
Alignment explanation
Indices: 23235661--23236097 Score: 623
Period size: 146 Copynumber: 3.1 Consensus size: 146
23235651 CCCTAACCCT
* *
23235661 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCAAATTTAATTAAAAACCCTA
1 AACCATAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
* * *
23235726 ACTCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTATAAACCCTAACCTTA
66 ACCCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTAAAAACCCTAACCCTA
*
23235791 ACGTAATTTAATTAAA
131 ACCTAATTTAATTAAA
* * *
23235807 AACCATAACCCTAACCTAATTTAATTAAAAAACTTAACCCTAACCTAATTTAATTAAAAATCCTA
1 AACCATAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
* * *
23235872 ACCCTAATCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTACAAACCTTAACCCTA
66 ACCCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTAAAAACCCTAACCCTA
23235937 ACCTAATTTAATT---
131 ACCTAATTTAATTAAA
* *
23235950 AA--A-AACCCTAACCTAAATTAATTACAAACCCTAACCCTAACCTAATTTAATT-AAAACCCTA
1 AACCATAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
*
23236011 ACCCTAACCTAATTTAATTAAAAACGCTAA--CCTAA--T---TTAATTAAAAACCCTAACCCTA
66 ACCCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTAAAAACCCTAACCCTA
23236069 ACCTAATTTAATTAAA
131 ACCTAATTTAATTAAA
*
23236085 AACCCTAAACCCT
1 AACCAT-AACCCT
23236098 TAACTTAAAA
Statistics
Matches: 263, Mismatches: 21, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
132 33 0.13
135 3 0.01
137 5 0.02
139 42 0.16
140 45 0.17
141 1 0.00
143 2 0.01
146 132 0.50
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (146 bp):
AACCATAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTA
ACCCTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTAAAAACCCTAACCCTA
ACCTAATTTAATTAAA
Found at i:23236063 original size:18 final size:20
Alignment explanation
Indices: 23236017--23236059 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
23236007 CCTAACCCTA
23236017 ACCTAATTTAATTAAAAACGC
1 ACCTAATTTAATTAAAAAC-C
23236038 TAACCTAATTTAATTAAAAACC
1 --ACCTAATTTAATTAAAAACC
23236060 CTAACCCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (20 bp):
ACCTAATTTAATTAAAAACC
Found at i:23236105 original size:22 final size:20
Alignment explanation
Indices: 23236076--23236121 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
23236066 CTAACCTAAT
23236076 TTAA-TTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AA-CC
23236097 TTAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACC
23236117 TTAAC
1 TTAAC
23236122 GTAATGTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 11 0.46
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAACTTAAAAACCCTAACC
Found at i:23236344 original size:116 final size:116
Alignment explanation
Indices: 23236123--23236338 Score: 373
Period size: 116 Copynumber: 1.9 Consensus size: 116
23236113 AACCTTAACG
23236123 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAAAAAATAATAATTTTACATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAAAAAATAATAATTTTACATAATTTGATA
*
23236188 ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACAAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
* * *
23236239 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTTTATATAATTTGATA
1 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAAAAAATAATAATTTTACATAATTTGATA
*
23236304 ATTTTACAAACCATTAA-A-ATTTTTTTGACTTAATA
66 ATTTTACAAACCATTAATACAATTTTTTGACTTAATA
23236339 CAATTTATCA
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
114 16 0.17
115 1 0.01
116 78 0.82
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.43
Consensus pattern (116 bp):
TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAAAAAATAATAATTTTACATAATTTGATA
ATTTTACAAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
Found at i:23239316 original size:126 final size:126
Alignment explanation
Indices: 23239008--23239485 Score: 764
Period size: 126 Copynumber: 3.8 Consensus size: 126
23238998 CCCAAACATG
* * * *
23239008 CTACTGTAACAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCTTGC
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
23239073 TAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAAT--TTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
* * * * * *
23239132 CTACTATAGTAAAAGCGCG-CTAACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAACGCGTC-CACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTG
*
23239196 TTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
*
23239258 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGT
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
23239323 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
23239384 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
** *
23239449 TAGAAGCGATTTTATACTATTTTATCAGAAATGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
23239486 CTCGAAATTA
Statistics
Matches: 330, Mismatches: 20, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
123 1 0.00
124 98 0.30
126 230 0.70
127 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (126 bp):
CTACTGTAGCAAAAACGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
Found at i:23241047 original size:14 final size:15
Alignment explanation
Indices: 23241022--23241050 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23241012 CCATTTAACA
23241022 ATTTTATTATTTTTT
1 ATTTTATTATTTTTT
23241037 ATTTT-TTATTTTTT
1 ATTTTATTATTTTTT
23241051 CTTTACGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTATTATTTTTT
Found at i:23244843 original size:17 final size:18
Alignment explanation
Indices: 23244821--23244855 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23244811 TAATTCTTTC
*
23244821 TATTAAT-ATAGAAATTA
1 TATTAATAATAAAAATTA
23244838 TATTAATAATAAAAATTA
1 TATTAATAATAAAAATTA
23244856 ATTTAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
TATTAATAATAAAAATTA
Found at i:23249501 original size:12 final size:11
Alignment explanation
Indices: 23249464--23249610 Score: 104
Period size: 11 Copynumber: 13.9 Consensus size: 11
23249454 GGCCTATTTT
23249464 TATTTT-AAAA
1 TATTTTAAAAA
23249474 -ATTTTAAAAA
1 TATTTTAAAAA
23249484 -ATTTTAAAAA
1 TATTTTAAAAA
23249494 GTATTTTAAAAA
1 -TATTTTAAAAA
*
23249506 AATTTTAAAAA
1 TATTTTAAAAA
23249517 GTATTTT--AAA
1 -TATTTTAAAAA
23249527 -A--TTAAAAA
1 TATTTTAAAAA
* *
23249535 AATTTAAAAAA
1 TATTTTAAAAA
23249546 GTATTTT-AAAA
1 -TATTTTAAAAA
23249557 -ATTTTAAATTAA
1 TATTTTAAA--AA
*
23249569 -A-ATTAAAAA
1 TATTTTAAAAA
23249578 -ATTTTAAAAAA
1 TATTTT-AAAAA
23249589 GTATTTTAAAAA
1 -TATTTTAAAAA
23249601 TATTTTAAAA
1 TATTTTAAAA
23249611 TTAAAATAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 33
0.74 0.05 0.22
Matches are distributed among these distances:
6 2 0.02
8 4 0.04
9 14 0.12
10 21 0.19
11 40 0.35
12 27 0.24
13 5 0.04
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:23249544 original size:29 final size:29
Alignment explanation
Indices: 23249499--23249632 Score: 108
Period size: 29 Copynumber: 4.8 Consensus size: 29
23249489 AAAAAGTATT
*
23249499 TTAAAAAAATTTTAAAAAGTATTTTAAAA
1 TTAAAAAAATTTAAAAAAGTATTTTAAAA
23249528 TTAAAAAAATTTAAAAAAGTATTTTAAAAA
1 TTAAAAAAATTTAAAAAAGTATTTT-AAAA
23249558 TTTTAAATTAAAA-TT-AAAAA--ATTTT--AA
1 --TTAAA--AAAATTTAAAAAAGTATTTTAAAA
** *
23249585 --AAAAGTATTTTAAAAA-TATTTTAAAA
1 TTAAAAAAATTTAAAAAAGTATTTTAAAA
23249611 TTAAAATAAA-TTAAAAAAGTAT
1 TTAAAA-AAATTTAAAAAAGTAT
23249633 GTAAAAAATA
Statistics
Matches: 85, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
21 2 0.02
22 2 0.02
23 8 0.09
24 5 0.06
26 2 0.02
27 2 0.02
28 11 0.13
29 28 0.33
30 9 0.11
32 10 0.12
33 2 0.02
34 4 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (29 bp):
TTAAAAAAATTTAAAAAAGTATTTTAAAA
Found at i:23249557 original size:83 final size:80
Alignment explanation
Indices: 23249464--23249658 Score: 245
Period size: 83 Copynumber: 2.4 Consensus size: 80
23249454 GGCCTATTTT
*
23249464 TATTTTAAAAATTTTAAAAAATTTTAAAAAGTATTTTAAAAAA-ATTTTAAAAAGTATTTTAAAA
1 TATTTTAAAAATTTTAAAAAA-ATTAAAAA--ATTTTAAAAAAGATTTTAAAAA-TATTTTAAAA
23249528 TTAAAA-AAATTTAAAAAAG
62 TTAAAATAAA-TTAAAAAAG
23249547 TATTTTAAAAATTTTAAATTAAAATTAAAAAATTTTAAAAAAGTATTTTAAAAATATTTTAAAAT
1 TATTTTAAAAATTTTAAA--AAAATTAAAAAATTTTAAAAAAG-ATTTTAAAAATATTTTAAAAT
23249612 TAAAATAAATTAAAAAAG
63 TAAAATAAATTAAAAAAG
* * *
23249630 TATGTAAAAAATATTT--TAAAATTAAAAAA
1 TATTTTAAAAAT-TTTAAAAAAATTAAAAAA
23249659 AATAAATATA
Statistics
Matches: 102, Mismatches: 4, Indels: 15
0.84 0.03 0.12
Matches are distributed among these distances:
80 12 0.12
82 11 0.11
83 53 0.52
84 23 0.23
85 3 0.03
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (80 bp):
TATTTTAAAAATTTTAAAAAAATTAAAAAATTTTAAAAAAGATTTTAAAAATATTTTAAAATTAA
AATAAATTAAAAAAG
Found at i:23249620 original size:22 final size:21
Alignment explanation
Indices: 23249553--23249620 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 21
23249543 AAAGTATTTT
23249553 AAAAATTTT-AAATTAAAATTA
1 AAAAATTTTAAAATTAAAA-TA
* ***
23249574 AAAAATTTTAAAAAAGTATTTTA
1 AAAAATTTT--AAAATTAAAATA
23249597 AAAATATTTTAAAATTAAAATA
1 AAAA-ATTTTAAAATTAAAATA
23249619 AA
1 AA
23249621 TTAAAAAAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
21 9 0.26
22 10 0.29
23 6 0.17
24 10 0.29
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (21 bp):
AAAAATTTTAAAATTAAAATA
Found at i:23249625 original size:40 final size:39
Alignment explanation
Indices: 23249499--23249664 Score: 210
Period size: 40 Copynumber: 4.1 Consensus size: 39
23249489 AAAAAGTATT
23249499 TTAAAAAA--ATTTTAAAAAGTATTTTAAAATTAAAAAAA
1 TTAAAAAAGTATTTTAAAAA-TATTTTAAAATTAAAAAAA
* *
23249537 TTTAAAAAAGTATTTTAAAAATTTTAAATTAAAATTAAAAAATT
1 -TTAAAAAAGTATTTTAAAAATATT---TTAAAATTAAAAAA-A
23249581 TTAAAAAAGTATTTTAAAAATATTTTAAAATTAAAATAAA
1 TTAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA-AAA
* *
23249621 TTAAAAAAGTATGTAAAAAATATTTTAAAATTAAAAAAA
1 TTAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAA
*
23249660 ATAAA
1 TTAAA
23249665 TATATTTATT
Statistics
Matches: 113, Mismatches: 7, Indels: 14
0.84 0.05 0.10
Matches are distributed among these distances:
39 15 0.13
40 49 0.43
41 12 0.11
43 37 0.33
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (39 bp):
TTAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAA
Found at i:23252928 original size:20 final size:20
Alignment explanation
Indices: 23252903--23252941 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23252893 GGTCAACGTC
* *
23252903 TGGTCAATGCTTATAAACAT
1 TGGTCAACGCTGATAAACAT
23252923 TGGTCAACGCTGATAAACA
1 TGGTCAACGCTGATAAACA
23252942 CCGATCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (20 bp):
TGGTCAACGCTGATAAACAT
Found at i:23254352 original size:21 final size:21
Alignment explanation
Indices: 23254304--23254352 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
23254294 TGAATATAAT
** *
23254304 AGCAAAATGGCAGTAAACAGC
1 AGCAAAACAGCAGTAAACAAC
**
23254325 AATAAAACAGCAGTAAACAAC
1 AGCAAAACAGCAGTAAACAAC
23254346 AGCAAAA
1 AGCAAAA
23254353 AAGTTTAGGC
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.18, G:0.16, T:0.08
Consensus pattern (21 bp):
AGCAAAACAGCAGTAAACAAC
Found at i:23255239 original size:2 final size:2
Alignment explanation
Indices: 23255232--23255260 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23255222 ATTGATAATA
23255232 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23255261 AATGGCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23258871 original size:14 final size:14
Alignment explanation
Indices: 23258854--23258891 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
23258844 TTTTAATATG
23258854 AATAATAAAAATAA
1 AATAATAAAAATAA
23258868 AATAA-AATAAATAA
1 AATAATAA-AAATAA
23258882 AAT-ATAAAAA
1 AATAATAAAAA
23258892 GGGAATCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AATAATAAAAATAA
Found at i:23260279 original size:18 final size:19
Alignment explanation
Indices: 23260258--23260299 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
23260248 ATTTGGGCTC
23260258 GGGTTT-TAATTT-TGTTT
1 GGGTTTGTAATTTGTGTTT
*
23260275 AGGGTTTGTTATTTGTGTTT
1 -GGGTTTGTAATTTGTGTTT
23260295 GGGTT
1 GGGTT
23260300 GGTTGGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.10, C:0.00, G:0.31, T:0.60
Consensus pattern (19 bp):
GGGTTTGTAATTTGTGTTT
Found at i:23262996 original size:138 final size:138
Alignment explanation
Indices: 23262748--23263166 Score: 689
Period size: 138 Copynumber: 3.0 Consensus size: 138
23262738 TGATAGTGGC
* *
23262748 ACACTCTT-GACTTTGGAGGTTCTCAATGTTGCAACTCTAACTGGTTGGTGTTGCGACA-TCTTC
1 ACACTCTTAG-CTTTGGGGGTTCTCAATGTTGCAACACTAACTGGTTGGTGTTGCGACATTC-TC
23262811 AGCAGTAGTCCTGGCTTCTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTG
64 AGCAGTAGTCCTGGCTTCTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTG
23262876 TCGTGACAAA
129 TCGTGACAAA
* *
23262886 ACACTCTTAGCTTTGGGGGTTCTCAATGTTGCAACACTAACTGGTTGGTGTTACGACATTCTCAA
1 ACACTCTTAGCTTTGGGGGTTCTCAATGTTGCAACACTAACTGGTTGGTGTTGCGACATTCTCAG
* * *
23262951 CAGTAGTCCTGGCTTCCTCACTTCAACAATCAGCAGTGGTATCGCGACCTTCGAGGCTTGGTGTT
66 CAGTAGTCCTGGCTTCTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTGTC
23263016 GTGACAAA
131 GTGACAAA
* * * *
23263024 ACATTCTTAGCTTTAGGGGTTCTCAATGTTGCAACACTAGCTGGTTGGTGTTGCGACATCCTCAG
1 ACACTCTTAGCTTTGGGGGTTCTCAATGTTGCAACACTAACTGGTTGGTGTTGCGACATTCTCAG
*
23263089 CAGTAGTCCTGGCTTTTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTGTC
66 CAGTAGTCCTGGCTTCTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTGTC
*
23263154 GTGACACA
131 GTGACAAA
23263162 ACACT
1 ACACT
23263167 TTTAATGTCG
Statistics
Matches: 260, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
138 257 0.99
139 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (138 bp):
ACACTCTTAGCTTTGGGGGTTCTCAATGTTGCAACACTAACTGGTTGGTGTTGCGACATTCTCAG
CAGTAGTCCTGGCTTCTTCACTTCAACAATCAGCAGTGGTATCGCGACCTTGGAGGCTTGGTGTC
GTGACAAA
Found at i:23263763 original size:6 final size:6
Alignment explanation
Indices: 23263752--23263780 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
23263742 ACAATTATAA
23263752 AATTAT AATTAT AATTAT AATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTA
23263781 ATTTATAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:23265199 original size:61 final size:61
Alignment explanation
Indices: 23265095--23265212 Score: 150
Period size: 61 Copynumber: 1.9 Consensus size: 61
23265085 ATGATTTTTT
*
23265095 CCTTGAAATTTTTAAAAAATTTTATTTAAACCCCCAAAATTTTTGAAAAATT-TCATGTATC
1 CCTTGAAATTTTTAAAAAATTTTAATTAAACCCCCAAAATTTTTG-AAAATTCTCATGTATC
* * * * *
23265156 CCTTGAAGTTTTTAGAAAATTTTAATTAGACCCATC-AAGTTTTTGAAAATTCTCATG
1 CCTTGAAATTTTTAAAAAATTTTAATTAAACCC-CCAAAATTTTTGAAAATTCTCATG
23265213 ATACCTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
60 6 0.12
61 42 0.86
62 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.41
Consensus pattern (61 bp):
CCTTGAAATTTTTAAAAAATTTTAATTAAACCCCCAAAATTTTTGAAAATTCTCATGTATC
Found at i:23267729 original size:2 final size:2
Alignment explanation
Indices: 23267722--23267746 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23267712 ATCATTCACG
23267722 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
23267747 TCCTGTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23269101 original size:20 final size:20
Alignment explanation
Indices: 23269060--23269103 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
23269050 TGAATGTTAT
*
23269060 TTTTAATATTTTTTAAATAA
1 TTTTAATATTTTTTAAAGAA
*
23269080 TTTTAATAGTTTTTT-TAGAA
1 TTTTAATA-TTTTTTAAAGAA
23269100 TTTT
1 TTTT
23269104 CTATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTAATATTTTTTAAAGAA
Found at i:23270379 original size:10 final size:10
Alignment explanation
Indices: 23270352--23270395 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
23270342 CAATTATGTT
23270352 ATTATAAAAA
1 ATTATAAAAA
*
23270362 A-TAAAAAAA
1 ATTATAAAAA
*
23270371 ATTGT-AAAA
1 ATTATAAAAA
23270380 ATTATAAAAA
1 ATTATAAAAA
23270390 ATTATA
1 ATTATA
23270396 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 16 0.57
10 12 0.43
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:23270380 original size:19 final size:19
Alignment explanation
Indices: 23270356--23270392 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23270346 TATGTTATTA
23270356 TAAAAAATAAAAAAAATTG
1 TAAAAAATAAAAAAAATTG
* *
23270375 TAAAAATTATAAAAAATT
1 TAAAAAATAAAAAAAATT
23270393 ATATTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (19 bp):
TAAAAAATAAAAAAAATTG
Found at i:23270405 original size:26 final size:25
Alignment explanation
Indices: 23270376--23270430 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
23270366 AAAAAATTGT
23270376 AAAAATTATAAAA-AATTATATTTT-TA
1 AAAAATTA-AAAATAATT-T-TTTTATA
23270402 AAAAATTAAAAATAATTTTTTTATA
1 AAAAATTAAAAATAATTTTTTTATA
23270427 AAAA
1 AAAA
23270431 TCTAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.15
25 11 0.41
26 12 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATTAAAAATAATTTTTTTATA
Found at i:23270411 original size:24 final size:25
Alignment explanation
Indices: 23270375--23270437 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
23270365 AAAAAAATTG
* *
23270375 TAAAAATTATAAAAAATTATATTTT
1 TAAAAAATATAAAAAATAATATTTT
*
23270400 TAAAAAAT-T-AAAAATAATTTTTT
1 TAAAAAATATAAAAAATAATATTTT
*
23270423 TATAAAAATCTAAAA
1 TA-AAAAATATAAAA
23270438 TATATAATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 14 0.44
24 7 0.22
25 8 0.25
26 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
TAAAAAATATAAAAAATAATATTTT
Found at i:23270412 original size:23 final size:25
Alignment explanation
Indices: 23270386--23270437 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
23270376 AAAAATTATA
*
23270386 AAAAATTATATTTTTA-AAAAAT-T
1 AAAAATAATATTTTTATAAAAATCT
*
23270409 AAAAATAATTTTTTTATAAAAATCT
1 AAAAATAATATTTTTATAAAAATCT
23270434 AAAA
1 AAAA
23270438 TATATAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 14 0.56
24 6 0.24
25 5 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATAATATTTTTATAAAAATCT
Found at i:23270525 original size:19 final size:20
Alignment explanation
Indices: 23270483--23270532 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
23270473 TCAAGTTTTC
* *
23270483 TTTTAACTTTTATAACATTT
1 TTTTAATTTTTATAACATTA
*
23270503 TTTTAATTTTTAT-ATATTA
1 TTTTAATTTTTATAACATTA
*
23270522 TTTTGATTTTT
1 TTTTAATTTTT
23270533 CAAAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTAATTTTTATAACATTA
Found at i:23274373 original size:27 final size:27
Alignment explanation
Indices: 23274343--23274399 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
23274333 CTGCACCTTC
* * *
23274343 GAATCTTCAATGTCAAGCTGAGGCTTT
1 GAATCATCAATCTCAAGCTGAGGATTT
* *
23274370 GAATCATCACTCTCCAGCTGAGGATTT
1 GAATCATCAATCTCAAGCTGAGGATTT
23274397 GAA
1 GAA
23274400 CCCTGCAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (27 bp):
GAATCATCAATCTCAAGCTGAGGATTT
Found at i:23276308 original size:20 final size:20
Alignment explanation
Indices: 23276268--23276309 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23276258 CAACATTATC
*
23276268 AATATTTAAAATATATGTAA
1 AATATTTAAAATACATGTAA
23276288 AATATTTAAAATGACAT-TAA
1 AATATTTAAAAT-ACATGTAA
23276308 AA
1 AA
23276310 GGCTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
AATATTTAAAATACATGTAA
Found at i:23276558 original size:20 final size:20
Alignment explanation
Indices: 23276533--23276577 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
23276523 GCTCCCCGTC
23276533 TATTTATAAC-ATAAAAAAAA
1 TATTTA-AACTATAAAAAAAA
*
23276553 TATTTAGACTTATAAAAAAAA
1 TATTTAAAC-TATAAAAAAAA
23276574 TATT
1 TATT
23276578 AACATAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 6 0.27
21 14 0.64
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
TATTTAAACTATAAAAAAAA
Found at i:23276589 original size:21 final size:21
Alignment explanation
Indices: 23276543--23276595 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
23276533 TATTTATAAC
*
23276543 ATAAAAAAAATATTTAGACTT
1 ATAAAAAAAATATTTAGACTA
23276564 ATAAAAAAAATA-TTA-ACATA
1 ATAAAAAAAATATTTAGAC-TA
*
23276584 ATTAAAAAAATA
1 ATAAAAAAAATA
23276596 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 15 0.52
21 12 0.41
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (21 bp):
ATAAAAAAAATATTTAGACTA
Found at i:23280158 original size:54 final size:54
Alignment explanation
Indices: 23280078--23280180 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
23280068 CTTTGGATCA
* *
23280078 TCATTCTCCCCCTCAGCCTTTAGACCCTCAATCTCC-ACCTCGGGCTTTGAACCC
1 TCATTCTCCACCTCAGCCTTTAGACCCACAATCTCCAACCT-GGGCTTTGAACCC
* * * *
23280132 TCATTCTTCACCTCAGGCTTTGGACCCACATTCTCCAACCTGGGCTTTG
1 TCATTCTCCACCTCAGCCTTTAGACCCACAATCTCCAACCTGGGCTTTG
23280181 GATCAGACTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 38 0.90
55 4 0.10
ACGTcount: A:0.17, C:0.40, G:0.14, T:0.30
Consensus pattern (54 bp):
TCATTCTCCACCTCAGCCTTTAGACCCACAATCTCCAACCTGGGCTTTGAACCC
Found at i:23280177 original size:27 final size:27
Alignment explanation
Indices: 23280068--23280182 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
23280058 GCAGCTGGCC
* * * * *
23280068 CTTTGGATCATCATTCTCCCCCTCAGC
1 CTTTGGACCCTCATTCTCCACCTCGGG
* *
23280095 CTTTAGACCCTCAATCTCCACCTCGGG
1 CTTTGGACCCTCATTCTCCACCTCGGG
* * *
23280122 CTTTGAACCCTCATTCTTCACCTCAGG
1 CTTTGGACCCTCATTCTCCACCTCGGG
*
23280149 CTTTGGACCCACATTCTCCAACCT-GGG
1 CTTTGGACCCTCATTCTCC-ACCTCGGG
23280176 CTTTGGA
1 CTTTGGA
23280183 TCAGACTGGA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 67 0.94
28 4 0.06
ACGTcount: A:0.17, C:0.37, G:0.15, T:0.30
Consensus pattern (27 bp):
CTTTGGACCCTCATTCTCCACCTCGGG
Found at i:23283049 original size:19 final size:18
Alignment explanation
Indices: 23283025--23283060 Score: 63
Period size: 18 Copynumber: 1.9 Consensus size: 18
23283015 ATATTTTTTA
23283025 TTTTTTATTTTTAAAATAT
1 TTTTTTA-TTTTAAAATAT
23283044 TTTTTTATTTTAAAATA
1 TTTTTTATTTTAAAATA
23283061 AATTTTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTATTTTAAAATAT
Found at i:23283066 original size:18 final size:19
Alignment explanation
Indices: 23283026--23283067 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
23283016 TATTTTTTAT
**
23283026 TTTTTATTTTTAAAATATT
1 TTTTTATTTTTAAAATAAA
23283045 TTTTTA-TTTTAAAATAAA
1 TTTTTATTTTTAAAATAAA
23283063 TTTTT
1 TTTTT
23283068 GGTGTTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTATTTTTAAAATAAA
Found at i:23283066 original size:19 final size:19
Alignment explanation
Indices: 23283024--23283067 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
23283014 TATATTTTTT
23283024 ATTTTTTATTTTTAAAATA
1 ATTTTTTATTTTTAAAATA
*
23283043 TTTTTTTA-TTTTAAAATAA
1 ATTTTTTATTTTTAAAAT-A
23283062 ATTTTT
1 ATTTTT
23283068 GGTGTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTTTTTATTTTTAAAATA
Found at i:23289304 original size:18 final size:18
Alignment explanation
Indices: 23289257--23289305 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
23289247 AATTTGCAAC
* *
23289257 ATAAATAGCTTTTTAAAT
1 ATAAATAACTTTTTAAAA
* *
23289275 ATATAT-ATTTTTTAAAA
1 ATAAATAACTTTTTAAAA
23289292 ATAAATAACTTTTT
1 ATAAATAACTTTTT
23289306 TTATCAAAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
ATAAATAACTTTTTAAAA
Found at i:23289766 original size:29 final size:30
Alignment explanation
Indices: 23289722--23289781 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
23289712 CAGTGATTTA
*
23289722 ATATAAATATATATAAT-TTTTATTTAACAT
1 ATATAAATATATATAATATTTT-TATAACAT
*
23289752 ATATAATTA-ATATAATATTTTTATAACAT
1 ATATAAATATATATAATATTTTTATAACAT
23289781 A
1 A
23289782 ATATTTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (30 bp):
ATATAAATATATATAATATTTTTATAACAT
Found at i:23292395 original size:23 final size:23
Alignment explanation
Indices: 23292365--23292410 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
23292355 GAAAGAAAGA
23292365 AAAAATCTATTAATAAACTAACC
1 AAAAATCTATTAATAAACTAACC
23292388 AAAAATCTATTAATAAACTAACC
1 AAAAATCTATTAATAAACTAACC
23292411 TTAAAGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAATCTATTAATAAACTAACC
Found at i:23292424 original size:23 final size:23
Alignment explanation
Indices: 23292375--23292424 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
23292365 AAAAATCTAT
* * *
23292375 TAATAAACTAACCAAAAATCTAT
1 TAATAAACTAACCAAAAAGCAAA
**
23292398 TAATAAACTAACCTTAAAGCAAA
1 TAATAAACTAACCAAAAAGCAAA
23292421 TAAT
1 TAAT
23292425 TGGTAGTAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (23 bp):
TAATAAACTAACCAAAAAGCAAA
Found at i:23296476 original size:51 final size:51
Alignment explanation
Indices: 23296367--23296478 Score: 127
Period size: 51 Copynumber: 2.2 Consensus size: 51
23296357 AAATGTTGTG
* ** *
23296367 GGCTAAATTTGTTAAATTAAGATTAAATTGACAAAAAATATAAATGTTATA
1 GGCTAAATTTGTTAAATCAAGACCAAATTGACAAAAAATATAAATGTTAAA
* * * * *
23296418 GGATAAATTTGTTAAATCAAGACCAAATTGATAGAACATGTAAACT-TTAAA
1 GGCTAAATTTGTTAAATCAAGACCAAATTGACAAAAAATATAAA-TGTTAAA
23296469 GGCTAAATTT
1 GGCTAAATTT
23296479 ATTATTATAC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 49 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.33
Consensus pattern (51 bp):
GGCTAAATTTGTTAAATCAAGACCAAATTGACAAAAAATATAAATGTTAAA
Found at i:23297974 original size:25 final size:23
Alignment explanation
Indices: 23297932--23297984 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
23297922 AACTTTATTT
*
23297932 TTATTATTAATTCTATTATTGCTA
1 TTATTATTAATTCCATTATT-CTA
23297956 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
23297980 TTATT
1 TTATT
23297985 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:23298089 original size:23 final size:23
Alignment explanation
Indices: 23298052--23298100 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
23298042 ATAATCATTA
* *
23298052 TTATTCTTTATTTGTTATTGTTG
1 TTATTCTTTATTTGTCATTATTG
23298075 TTATTCTATTA-TTGTCATTATTG
1 TTATTCT-TTATTTGTCATTATTG
23298098 TTA
1 TTA
23298101 ATATTGGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.18, C:0.06, G:0.10, T:0.65
Consensus pattern (23 bp):
TTATTCTTTATTTGTCATTATTG
Found at i:23302336 original size:31 final size:31
Alignment explanation
Indices: 23302267--23302336 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
23302257 AATGATCACG
*
23302267 GAGCTATTCGAAAGTTTTCATTTAAGTTATT
1 GAGCTATTCGAAAGTTTTCATTTAAGTCATT
* * *
23302298 GAACTATTTGAAAGTTTTTATTTAAGTCATT
1 GAGCTATTCGAAAGTTTTCATTTAAGTCATT
*
23302329 GGGCTATT
1 GAGCTATT
23302337 ATGTTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (31 bp):
GAGCTATTCGAAAGTTTTCATTTAAGTCATT
Found at i:23311883 original size:72 final size:72
Alignment explanation
Indices: 23311764--23311905 Score: 230
Period size: 72 Copynumber: 2.0 Consensus size: 72
23311754 TCTCGGATTT
* * * *
23311764 AAAAAAAGGGATCATGCCTAGTAAGTTAGGACACAATCTTTTCTTAATTCCCAAGATCGTTTAAA
1 AAAAAAAGGGATCATGCATAGTAAGTTAGGACACAATCTCTTATTAATTCACAAGATCGTTTAAA
23311829 ACTTGAG
66 ACTTGAG
* *
23311836 AAAAAAAGGGATCATGCATAGTAAGTTAGGACACGATCTCTTATTAATTCACGAGATCGTTTAAA
1 AAAAAAAGGGATCATGCATAGTAAGTTAGGACACAATCTCTTATTAATTCACAAGATCGTTTAAA
23311901 ACTTG
66 ACTTG
23311906 TTTGAAAATA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (72 bp):
AAAAAAAGGGATCATGCATAGTAAGTTAGGACACAATCTCTTATTAATTCACAAGATCGTTTAAA
ACTTGAG
Found at i:23313331 original size:38 final size:38
Alignment explanation
Indices: 23313280--23313355 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
23313270 GCGCCGCCTT
*
23313280 ATACGGTGGTCGGCGAAAATAAAAGAGTGCCCTTTTAA
1 ATACGGCGGTCGGCGAAAATAAAAGAGTGCCCTTTTAA
23313318 ATACGGCGGTCGGCGAAAATAAAAGAGTGCCCTTTTAA
1 ATACGGCGGTCGGCGAAAATAAAAGAGTGCCCTTTTAA
23313356 GCGCCTTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (38 bp):
ATACGGCGGTCGGCGAAAATAAAAGAGTGCCCTTTTAA
Found at i:23314527 original size:44 final size:44
Alignment explanation
Indices: 23314421--23314682 Score: 150
Period size: 44 Copynumber: 5.8 Consensus size: 44
23314411 TGATTAGCAG
* * * ** *
23314421 CTTCAATCTGCTGCACTGCTACTTCAGGGAGATAAGACTTGCATA
1 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTG-TTA
** *
23314466 -TTCAACCTGCCCCACTGCAACTTCAGGGGGATAAGGTTTGTTA
1 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTGTTA
* * * * **
23314509 CTTCAACCTGCTTTACTGCAACTTTAGAGAGATAATGTTTGTGG
1 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTGTTA
* * * *** * *
23314553 CTTTAATCTGCTTCACTGTAACTTCAAAAAGATAAGACTTGTAGCATA
1 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAG-GTT-T-G-TTA
* * * *
23314601 TCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTGGTTTA
1 -CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTG-TTA
* * * *
23314647 TTTTTAACCTGC-TCGACTGCAACTTTAAGGAGATAA
1 -CTTCAACCTGCTTC-ACTGCAACTTCAGGGAGATAA
23314683 AGCTAGTGTT
Statistics
Matches: 167, Mismatches: 43, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
43 2 0.01
44 95 0.57
45 4 0.02
46 31 0.19
47 1 0.01
48 2 0.01
49 32 0.19
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
CTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTGTTA
Found at i:23314905 original size:132 final size:132
Alignment explanation
Indices: 23314747--23315009 Score: 391
Period size: 132 Copynumber: 2.0 Consensus size: 132
23314737 ATAAGACTAG
* ** * *
23314747 TGGCTTAAATCTACTTCCCTACTACCTTGAGAAGATAAGATTTTCTACCTTCGATCTGCTCTACT
1 TGGCTTAAATCTACTTCCCTACTACCTTGAGAAAATAAGATTCGCCACCTTCGATCTGCTCCACT
* * * *
23314812 ACTGCTTAGGGAGATAGGATCTACAATCTTCAATCTACTCCACTGCTTCTCAGGGAGACAAGGCT
66 ACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTTCTCAAGGAGACAAGGCT
23314877 GT
131 GT
* * **
23314879 TGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCCGTCTTCGATCTGCTCCACT
1 TGGCTTAAATCTACTTCCCTACTACCTTGAGAAAATAAGATTCGCCACCTTCGATCTGCTCCACT
* *
23314944 ACTGCTTAGGGAGACATGATATACAATCTTCAACCTACTCTACTGCTTCTCAAGGAGACAAGGCT
66 ACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTTCTCAAGGAGACAAGGCT
23315009 G
131 G
23315010 GTATCTTCGA
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 116 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (132 bp):
TGGCTTAAATCTACTTCCCTACTACCTTGAGAAAATAAGATTCGCCACCTTCGATCTGCTCCACT
ACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTTCTCAAGGAGACAAGGCT
GT
Found at i:23315051 original size:132 final size:132
Alignment explanation
Indices: 23314795--23315051 Score: 309
Period size: 132 Copynumber: 1.9 Consensus size: 132
23314785 GATTTTCTAC
* * * *
23314795 CTTCGATCTGCTCTACTACTGCTTAGGGAGATAGGATCTACAATCTTCAATCTACTCCACTGCTT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTT
* * * * * * ** *
23314860 CTCAGGGAGACAAGGCTGTTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCC
66 CTCAAGGAGACAAGGCTGGTAGCTTAAATCTACTTCCCTACCACATCAGGAAAACAAGATTCGCC
23314925 GT
131 GT
* *
23314927 CTTCGATCTGCTCCACTACTGCTTAGGGAGACATGATATACAATCTTCAACCTACTCTACTGCTT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTT
* ** * * *
23314992 CTCAAGGAGACAAGGCTGGTATCTTCGATCTACTTCGCTGCCA-ATACAGGAATACAAGAT
66 CTCAAGGAGACAAGGCTGGTAGCTTAAATCTACTTCCCTACCACAT-CAGGAAAACAAGAT
23315052 CTGCTGCTTT
Statistics
Matches: 103, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
131 1 0.01
132 102 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (132 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCCACTGCTT
CTCAAGGAGACAAGGCTGGTAGCTTAAATCTACTTCCCTACCACATCAGGAAAACAAGATTCGCC
GT
Found at i:23315169 original size:50 final size:51
Alignment explanation
Indices: 23315069--23315189 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 51
23315059 TTTCAGTCTT
* * * *
23315069 AACGCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTATTCCACTGC
1 AACGCCAGGGAAACAAGATTCACTGCCTTCAGCTTTAATCTATTCCACTGC
* * * * *
23315120 AATGCCAGGGAAACAAGATTCACTGTCTTTAG-TTTTATCTATTCTACTGC
1 AACGCCAGGGAAACAAGATTCACTGCCTTCAGCTTTAATCTATTCCACTGC
* * *
23315170 CACGCTAGGGAAATAAGATT
1 AACGCCAGGGAAACAAGATT
23315190 TGATGTTGTA
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
50 32 0.56
51 25 0.44
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (51 bp):
AACGCCAGGGAAACAAGATTCACTGCCTTCAGCTTTAATCTATTCCACTGC
Found at i:23315230 original size:50 final size:50
Alignment explanation
Indices: 23315176--23316060 Score: 587
Period size: 50 Copynumber: 17.7 Consensus size: 50
23315166 CTGCCACGCT
* * ** * **
23315176 AGGGAAATAAGATTTGATGTTGTAGCTTCAATCTGTTCCACTACACCGCC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * * *
23315226 AGGGAAGTATGA-TTCATTGTTGTAACTTCAATTTATTTAACTACAATGTC
1 AGGGAAGTAAGATTTGA-TGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * * * **
23315276 GGGGAAGCAAGATTCGCTGTTGTAGTTTCAATCTATTTAACTGTAATTTC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * ** * *
23315326 AGGAAAGCAAGA-TTCACTGTTGTAGCTTCAATCTGTTCCACTACACA-GCT
1 AGGGAAGTAAGATTTGA-TGTTGTAGCTTCAATCTATTTAACTGCA-ATGCC
* * * *
23315376 AGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGTC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * ** * * *
23315426 GGGGAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTCCACTGCACTACT
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
** * * *
23315476 AGAAAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * * ** **
23315526 AGGGAAGCAAGATTCGCTGTTGCAGCTTCAATCTGTTCCACTGCACCGCC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * *
23315576 AGGGAAATAAGA-TTCACTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
1 AGGGAAGTAAGATTTGA-TGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * ** * **
23315626 GGGGAAGCAAGATTTGTTGTTGTAGCTTCAATCTGTTCCACTACACCGCC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* ** * ** *
23315676 AGGGACGTAAGATTTGATGTTGTAGCTTCAATCTATTCCACTACACCGCT
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * *
23315726 AGGGAAGTAAGA-TTCATTGTTGTAGCTTCAATCTATTTAACTACAATGTC
1 AGGGAAGTAAGATTTGA-TGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * * *
23315776 GGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGTAATGTC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * ** * *** *
23315826 -GGGAAAGCAAGA-TTCACTATTGTAGCTTCAATCTGTTCCACTACACCACT
1 AGGG-AAGTAAGATTTGA-TGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * *
23315876 AGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGTC
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * * * * * * *
23315926 GGGGAAGCAAGATTCGTTGTTGTAGCTTTAATCTGTTTCACTGCACTGCT
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * ***
23315976 AGTGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATTTT
1 AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
* * * *
23316026 AGGGGAAGCAAGATTCGCTGTTCTAGCTTCAATCT
1 A-GGGAAGTAAGATTTGATGTTGTAGCTTCAATCT
23316061 GTTCCGCTGC
Statistics
Matches: 643, Mismatches: 177, Indels: 29
0.76 0.21 0.03
Matches are distributed among these distances:
49 13 0.02
50 590 0.92
51 40 0.06
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (50 bp):
AGGGAAGTAAGATTTGATGTTGTAGCTTCAATCTATTTAACTGCAATGCC
Found at i:23315281 original size:100 final size:100
Alignment explanation
Indices: 23315099--23316065 Score: 927
Period size: 100 Copynumber: 9.7 Consensus size: 100
23315089 CGCTGCCTTC
* ** * * * ** *
23315099 AGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTGTCTTTAG-TTTTATCTATT
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGT-TGTAGCTTCAATCTGTT
* * * * * * *
23315163 CTACTGCCACGCTAGGGAAATAAGATTTGATGTTGT
65 CCACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* ** * ** * * * * * * * *
23315199 AGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTATGATTCATTGTTGTAACTTCAATTTATTT
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
* * * * *
23315264 AACTACAATGTCGGGGAAGCAAGATTCGCTGTTGT
66 CACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* * * *
23315299 AGTTTCAATCTATTTAACTGTAATTTCAGGAAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
* * *
23315364 CACTACACA-GCTAGGGAAGTAAGATTCGCTATTGT
66 CACTACA-ATGCCAGGGAAGTAAGATTCGATGTTGT
* **
23315399 AGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTC
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
* * * * ** *
23315464 CACTGCACTACTAGAAAAGTAAGATTCGCTGTTGT
66 CACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* *
23315499 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCGCTGTTGCAGCTTCAATCTGTTC
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
* ** *
23315564 CACTGCACCGCCAGGGAAATAAGATTC-ACTGTTGT
66 CACTACAATGCCAGGGAAGTAAGATTCGA-TGTTGT
* ***
23315599 AGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTTGTTGTTGTAGCTTCAATCTGTTC
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
** * *
23315664 CACTACACCGCCAGGGACGTAAGATTTGATGTTGT
66 CACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
** * ** * * *
23315699 AGCTTCAATCTATTCCACTACACCG-CTAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATT
1 AGCTTCAATCTATTTAACTGCAATGTC-AGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTT
** * * * *
23315763 TAACTACAATGTCGGGGAAGCAAGATTCGTTGTTGT
65 CCACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* *
23315799 AGCTTCAATCTATTTAACTGTAATGTC-GGGAAAGCAAGATTCACTATTGTAGCTTCAATCTGTT
1 AGCTTCAATCTATTTAACTGCAATGTCAGGG-AAGCAAGATTCACTGTTGTAGCTTCAATCTGTT
*** * * *
23315863 CCACTACACCACTAGGGAAGTAAGATTCGCTATTGT
65 CCACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* ** * *
23315899 AGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCGTTGTTGTAGCTTTAATCTGTTT
1 AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
* * * * *
23315964 CACTGCACTGCTAGTGAAGTAAGATTCGCTGTTGT
66 CACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
* * * *
23315999 AGCTTCAATCTATTTAACTGCAATTTTAGGGGAAGCAAGATTCGCTGTTCTAGCTTCAATCTGTT
1 AGCTTCAATCTATTTAACTGCAATGTCA-GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTT
23316064 CC
65 CC
23316066 GCTGCGACTT
Statistics
Matches: 717, Mismatches: 140, Indels: 19
0.82 0.16 0.02
Matches are distributed among these distances:
99 7 0.01
100 670 0.93
101 40 0.06
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (100 bp):
AGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTC
CACTACAATGCCAGGGAAGTAAGATTCGATGTTGT
Found at i:23315390 original size:150 final size:150
Alignment explanation
Indices: 23315184--23316060 Score: 836
Period size: 150 Copynumber: 5.8 Consensus size: 150
23315174 CTAGGGAAAT
* * * * * *
23315184 AAGATTTGATGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTATGATTCATTGTTGT
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGATTCACTGTTGT
* * * * *
23315249 AACTTCAATTTATTTAACTACAATGTCGGGGAAGCAAGATTCGCTGTTGTAGTTTCAATCTATTT
66 AGCTTCAATCTATTCAACTACAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTT
* * * *
23315314 AACTGTAATTTCAGGAAAGC
131 AACTGCAATGTCGGGGAAGC
** * *
23315334 AAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGATTCGCTATTGT
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGATTCACTGTTGT
* * * * * *
23315399 AGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTC
66 AGCTTCAATCTATTCAACTACAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTT
* * * * ** *
23315464 CACTGCACT-ACTAGAAAAGT
131 AACTGCAATGTC-GGGGAAGC
* * ** * * *
23315484 AAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCA-ATG-TCAGGGAAGCAAGATTCGCTGTT
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACA-GCT-AGGGAAGTAAGATTCACTGTT
* * * * ** * ** *
23315547 GCAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCACTGTTGTAGCTTCAATCTAT
64 GTAGCTTCAATCTATTCAACTACAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTAT
23315612 TTAACTGCAATGTCGGGGAAGC
129 TTAACTGCAATGTCGGGGAAGC
* * * * *
23315634 AAGATTTGTTGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGGGACGTAAGATTTGA-TGTTG
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGA-TTCACTGTTG
* ** * **
23315698 TAGCTTCAATCTATTCCACTACACCG-CTAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTAT
65 TAGCTTCAATCTATTCAACTACAATGTC-AGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTAT
*
23315762 TTAACTACAATGTCGGGGAAGC
129 TTAACTGCAATGTCGGGGAAGC
* ** ** * * *
23315784 AAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGTA-ATG-TCGGGAAAGCAAGATTCACTATT
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACA-GCTAGGG-AAGTAAGATTCACTGTT
* * * * *
23315847 GTAGCTTCAATCTGTTCCACTACACCA-CT-AGGGAAGTAAGATTCGCTATTGTAGCTTCAATCT
64 GTAGCTTCAATCTATTCAACTACA--ATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
23315910 ATTTAACTGCAATGTCGGGGAAGC
127 ATTTAACTGCAATGTCGGGGAAGC
* * * * * *
23315934 AAGATTCGTTGTTGTAGCTTTAATCTGTTTCACTGCACTGCTAGTGAAGTAAGATTCGCTGTTGT
1 AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGATTCACTGTTGT
* * * * *
23315999 AGCTTCAATCTATTTAACTGCAATTTTAGGGGAAGCAAGATTCGCTGTTCTAGCTTCAATCT
66 AGCTTCAATCTATTCAACTACAATGTCA-GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
23316061 GTTCCGCTGC
Statistics
Matches: 602, Mismatches: 106, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
148 1 0.00
149 11 0.02
150 554 0.92
151 36 0.06
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (150 bp):
AAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACAGCTAGGGAAGTAAGATTCACTGTTGT
AGCTTCAATCTATTCAACTACAATGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTT
AACTGCAATGTCGGGGAAGC
Found at i:23328153 original size:72 final size:72
Alignment explanation
Indices: 23328036--23328177 Score: 239
Period size: 72 Copynumber: 2.0 Consensus size: 72
23328026 TCTCGGATTT
* * *
23328036 AAAAAAAGGGATCATGCCCAGTTAGTTAGGACACAATCTTTTCTTAATTCCCGATACCGTTTAAA
1 AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGACCGTTTAAA
23328101 ACTTGAG
66 ACTTGAG
* *
23328108 AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAA
1 AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGACCGTTTAAA
23328173 ACTTG
66 ACTTG
23328178 TTTGAAAATA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (72 bp):
AAAAAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTCTTCTTAATTCCCGAGACCGTTTAAA
ACTTGAG
Found at i:23328621 original size:6 final size:6
Alignment explanation
Indices: 23328610--23328661 Score: 95
Period size: 6 Copynumber: 8.7 Consensus size: 6
23328600 TAAATAAGTA
*
23328610 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATTTT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
23328658 AATA
1 AATA
23328662 GTAGAATAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATATT
Found at i:23328976 original size:3 final size:3
Alignment explanation
Indices: 23328968--23329012 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
23328958 AAAATAAAAC
*
23328968 TAA TAA TAA TAGA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
23329013 TCAAATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23331035 original size:65 final size:64
Alignment explanation
Indices: 23330853--23331454 Score: 466
Period size: 65 Copynumber: 9.4 Consensus size: 64
23330843 TGACTACATC
* * * *
23330853 ATTAAGAAGTTAAAGAGGTGTTTTTTT-AGA-GGAGTTGAAACTATGGTTAGAAGATTTGTGAA
1 ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
* * * * * * ** * *
23330915 ATTGAA-AAGGTAAAAAAGTGTTTTTTT-TGTGTGGGTTAAAACTATAATTAGAAGATTTATAAA
1 ATT-AAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
* *
23330978 ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTTGAAACTATGGTTAGAAGATTTTTTAA
1 ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGG-TTGAAACTATGGTTAGAAGATTTGTGAA
* * * *
23331043 ATTTAGAAGCTAAAGAAGTGTTTTTTTGGTGGGGGAAGGGTTGAAACTATGGTTAAAAGAGTTGT
1 ATTAAGAAGCTAAAGAAGTGTTTTTTT-G-GGAGG--GGGTTGAAACTATGGTTAGAAGATTTGT
23331108 GAA
62 GAA
* * * * *
23331111 AATAAGAAGCTAAAGAAGTATTTTTTTGTGGTGGGGGGAAGAGTTGAAACTATGGTTAAAAGAGT
1 ATTAAGAAGCTAAAGAAGT-GTTTTTT-T-G-GGAGGG--G-GTTGAAACTATGGTTAGAAGATT
*
23331176 TATGAA
59 TGTGAA
* * * * *
23331182 ATTGAGAAGATAAATAACTGTTTTTTT---A-GGGGTTGAAACCATGGTTAGAAGATTTGTGAA
1 ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
* * * * *
23331242 ATTAAGAATCTAAAGAATTGTTTCTTTGTGGG-GAGGGTTGAAACTATGGTTAAAAGAGTTGTGA
1 ATTAAGAAGCTAAAGAAGTGTTT-TTT-TGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGA
23331306 A
64 A
* * * * * *
23331307 ATTGAGAAGAT-AAGTAACT-TTTTTTTAGG-GGGGGTTGAAACTATGGTTAGAAAATTTTTGAA
1 ATTAAGAAGCTAAAG-AAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
* * * * * *
23331369 ATTAAGAAGCTAAAGAATTATTTTTTT-----TGGG-TGAAACTATGGTTAAAAGAGTTGTAAA
1 ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
* * *
23331427 ATTGAGAAACTAAAGAACTGTATTTTTT
1 ATTAAGAAGCTAAAGAAGTGT-TTTTTT
23331455 TTNNNNGGGG
Statistics
Matches: 441, Mismatches: 75, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
58 39 0.09
59 9 0.02
60 43 0.10
61 4 0.01
62 68 0.15
63 64 0.15
64 11 0.02
65 88 0.20
66 1 0.00
67 4 0.01
68 42 0.10
69 10 0.02
70 16 0.04
71 42 0.10
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (64 bp):
ATTAAGAAGCTAAAGAAGTGTTTTTTTGGGAGGGGGTTGAAACTATGGTTAGAAGATTTGTGAA
Found at i:23331467 original size:127 final size:124
Alignment explanation
Indices: 23331153--23331434 Score: 389
Period size: 127 Copynumber: 2.3 Consensus size: 124
23331143 GGGGGGAAGA
* * *
23331153 GTTGAAACTATGGTTAAAAGAGTTATGAAATTGAGAAGATAAATAACTGTTTTTTTA---GGGGT
1 GTTGAAACTATGGTTAAAAGAGTTGTAAAATTGAGAAGATAAGTAACT-TTTTTTTAGGGGGGGT
* * *
23331215 TGAAACCATGGTTAGAAGATTTGTGAAATTAAGAATCTAAAGAATTGTTTCTTTGTGGGGAGG
65 TGAAACCATGGTTAGAAAATTTGTGAAATTAAGAAGCTAAAGAATTATTTCTTTGT---GAGG
*
23331278 GTTGAAACTATGGTTAAAAGAGTTGTGAAATTGAGAAGATAAGTAACTTTTTTTTAGGGGGGGTT
1 GTTGAAACTATGGTTAAAAGAGTTGTAAAATTGAGAAGATAAGTAACTTTTTTTTAGGGGGGGTT
* * *
23331343 GAAACTATGGTTAGAAAATTTTTGAAATTAAGAAGCTAAAGAATTATTT-TTT-T-TGG
66 GAAACCATGGTTAGAAAATTTGTGAAATTAAGAAGCTAAAGAATTATTTCTTTGTGAGG
23331399 G-TGAAACTATGGTTAAAAGAGTTGTAAAATTGAGAA
1 GTTGAAACTATGGTTAAAAGAGTTGTAAAATTGAGAA
23331435 ACTAAAGAAC
Statistics
Matches: 145, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
120 34 0.23
121 3 0.02
124 8 0.06
125 47 0.32
126 3 0.02
127 50 0.34
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (124 bp):
GTTGAAACTATGGTTAAAAGAGTTGTAAAATTGAGAAGATAAGTAACTTTTTTTTAGGGGGGGTT
GAAACCATGGTTAGAAAATTTGTGAAATTAAGAAGCTAAAGAATTATTTCTTTGTGAGG
Done.