Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 88 of 141
Found at i:24966840 original size:19 final size:20
Alignment explanation
Indices: 24966793--24966850 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
24966783 AAATTAAATC
*
24966793 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
24966816 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
24966835 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
24966851 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:24968162 original size:21 final size:21
Alignment explanation
Indices: 24968145--24968184 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24968135 ACCGTTATAG
24968145 TAACTAATATTACTGTTACAA
1 TAACTAATATTACTGTTACAA
* *
24968166 TAATTAATATTACTATTAC
1 TAACTAATATTACTGTTAC
24968185 TGTTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (21 bp):
TAACTAATATTACTGTTACAA
Found at i:24971121 original size:36 final size:36
Alignment explanation
Indices: 24971081--24971149 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
24971071 CAGATTAATC
24971081 CATCCTCTCTAGATTCTATTTGATTTATGTTATTTA
1 CATCCTCTCTAGATTCTATTTGATTTATGTTATTTA
*
24971117 CATCCTCTCTAGATTCTCTTTGATTTATGTTAT
1 CATCCTCTCTAGATTCTATTTGATTTATGTTAT
24971150 CAACACCTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.20, C:0.19, G:0.09, T:0.52
Consensus pattern (36 bp):
CATCCTCTCTAGATTCTATTTGATTTATGTTATTTA
Found at i:24973625 original size:29 final size:30
Alignment explanation
Indices: 24973593--24973665 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
24973583 TTAAATTAAT
24973593 AATAATAAAAATAT-ATTTTAGTTC-TCAAA
1 AATAATAAAAATATAATTTTA-TTCTTCAAA
* *
24973622 AATAATAAAAATTTAATTTTATTCTTTAAA
1 AATAATAAAAATATAATTTTATTCTTCAAA
*
24973652 AATTATAAAAATAT
1 AATAATAAAAATAT
24973666 TAACTATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 16 0.42
30 22 0.58
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (30 bp):
AATAATAAAAATATAATTTTATTCTTCAAA
Found at i:24974585 original size:28 final size:29
Alignment explanation
Indices: 24974509--24974593 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 29
24974499 ACTGTTATTT
* * * *
24974509 TGTTTCTT-TATGTAGATTTAAATTTAAA
1 TGTTTATTATATGTAAATTTAATTTTTAA
* * * *
24974537 TGTTTATTTTATATGATTTTAATTTTTAA
1 TGTTTATTATATGTAAATTTAATTTTTAA
*
24974566 TG-TTATTATATGTAAATTT-ATTTATAA
1 TGTTTATTATATGTAAATTTAATTTTTAA
24974593 T
1 T
24974594 TAATAGTTAT
Statistics
Matches: 44, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
27 8 0.18
28 20 0.45
29 16 0.36
ACGTcount: A:0.32, C:0.01, G:0.08, T:0.59
Consensus pattern (29 bp):
TGTTTATTATATGTAAATTTAATTTTTAA
Found at i:24974800 original size:10 final size:10
Alignment explanation
Indices: 24974785--24974811 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
24974775 AGGAGGATAA
24974785 TGCACTTCAC
1 TGCACTTCAC
24974795 TGCACTTCAC
1 TGCACTTCAC
24974805 TGCACTT
1 TGCACTT
24974812 AAACCTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.37, G:0.11, T:0.33
Consensus pattern (10 bp):
TGCACTTCAC
Found at i:24976456 original size:22 final size:22
Alignment explanation
Indices: 24976431--24976487 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
24976421 TTAATTTTCA
24976431 TATATATATATATATACCTTAT
1 TATATATATATATATACCTTAT
* * * *
24976453 TATAAATATCTTTATATCTTAT
1 TATATATATATATATACCTTAT
*
24976475 TATGTATATATAT
1 TATATATATATAT
24976488 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATATATATATATACCTTAT
Found at i:24976498 original size:26 final size:25
Alignment explanation
Indices: 24976449--24976498 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
24976439 TATATATACC
*
24976449 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
24976474 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
24976499 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:24977381 original size:107 final size:106
Alignment explanation
Indices: 24977254--24977456 Score: 309
Period size: 107 Copynumber: 1.9 Consensus size: 106
24977244 AAAAATAATA
* * *
24977254 AAGGCAATGTTTTGCGTTTGGAGATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGTTTTTTT
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCG-ATTTCT
* * *
24977319 CGTTCT-ATCAAATAGTCAAATATCCTTTTAAAATTTTGAAGT
65 CGTT-TGACCAAATAGCCAAATATCCTCTTAAAATTTTGAAGT
* *
24977361 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAGATGTGCCCTAATGTGCTGGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTC
24977426 GTTTGACCAAATAGCCAAATATCCTCTTAAA
66 GTTTGACCAAATAGCCAAATATCCTCTTAAA
24977457 TCTTAATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 1 0.01
106 31 0.36
107 55 0.63
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (106 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTC
GTTTGACCAAATAGCCAAATATCCTCTTAAAATTTTGAAGT
Found at i:24981485 original size:13 final size:13
Alignment explanation
Indices: 24981469--24981505 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
24981459 AAAAGATAAA
24981469 AAAAAATCAAAAT
1 AAAAAATCAAAAT
24981482 -AAAAATCAAAAT
1 AAAAAATCAAAAT
*
24981494 AAAAAAACAAAA
1 AAAAAATCAAAA
24981506 AGAAAAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.81, C:0.08, G:0.00, T:0.11
Consensus pattern (13 bp):
AAAAAATCAAAAT
Found at i:24981952 original size:6 final size:6
Alignment explanation
Indices: 24981920--24981944 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24981910 AAAAAAAAAG
24981920 ATGAAA ATGAAA ATGAAA ATGAAA A
1 ATGAAA ATGAAA ATGAAA ATGAAA A
24981945 AATGAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
ATGAAA
Found at i:24981958 original size:14 final size:14
Alignment explanation
Indices: 24981914--24981952 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
24981904 AAGTTAAAAA
24981914 AAAAAGATGAAAATG
1 AAAAA-ATGAAAATG
24981929 --AAAATGAAAATG
1 AAAAAATGAAAATG
24981941 AAAAAATGAAAA
1 AAAAAATGAAAA
24981953 GTAAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.41
13 3 0.14
14 10 0.45
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (14 bp):
AAAAAATGAAAATG
Found at i:24983504 original size:87 final size:87
Alignment explanation
Indices: 24983184--24983589 Score: 485
Period size: 89 Copynumber: 4.6 Consensus size: 87
24983174 GAGTGAAGAG
24983184 CGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
1 CGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
* * * *
24983249 GTACATTGACGGCGCAGCAGAT
66 CTACATTAACAGCGAAGCAGAT
** * * * *
24983271 CGAAAGACACAAACCTTGCCTCTC-TCAATTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCT
1 CGAAA-ACA-AAACCTTGCCTC-CATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCC
* * * *
24983335 TTCGTGCATTGACGGCGAAGCAGAT
63 TTCCTACATTAACAGCGAAGCAGAT
* * * * *
24983360 CGAAAGACACAAACTTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
1 CGAAA-ACA-AAACCTTGCCTC-CATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCC
*
24983424 GTCCTACATTAACAGCGAAGCAGAT
63 TTCCTACATTAACAGCGAAGCAGAT
* * **
24983449 CGAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGTATTC
1 CGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
*
24983514 CTACGTTAACAGCGAAGCAGAT
66 CTACATTAACAGCGAAGCAGAT
* * *
24983536 CAAAAACAAAGCCTTGCCTCCATCGGTTGCAGCGGAGCTGGTTAAAGA-AGCAGA
1 CGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGA
24983590 CCCAAAAACA
Statistics
Matches: 283, Mismatches: 32, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
86 7 0.02
87 116 0.41
88 6 0.02
89 153 0.54
90 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (87 bp):
CGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTC
CTACATTAACAGCGAAGCAGAT
Found at i:24983606 original size:56 final size:55
Alignment explanation
Indices: 24983527--24983644 Score: 200
Period size: 56 Copynumber: 2.1 Consensus size: 55
24983517 CGTTAACAGC
*
24983527 GAAGCAGATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGCGGAGCTGGTTAAA
1 GAAGCAGACCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGCGGAGCTGGTTAAA
*
24983582 GAAGCAGACCCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAA
1 GAAGCAGA-CCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGCGGAGCTGGTTAAA
24983638 GATAGCA
1 GA-AGCA
24983645 AATCTTGCCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
55 8 0.14
56 47 0.80
57 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (55 bp):
GAAGCAGACCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGCGGAGCTGGTTAAA
Found at i:24983719 original size:44 final size:43
Alignment explanation
Indices: 24983671--24983852 Score: 141
Period size: 44 Copynumber: 4.2 Consensus size: 43
24983661 GTACTAGCGG
* *
24983671 AGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGA
1 AGCAGATCGAAGACGGC-AATCCTATCTCCCTAAGCAGTAGTGA
** * ** * *
24983715 AGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGG
1 AGCAGATCGAAGACGGCAATCCTATCTCCCTAAGCAGTAGTGA
* * * * * * *
24983758 AGCGGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGCAGATCGAAGACGGCA-ATCCTATCTCCCTAAGCAGTAGTGA
*** *
24983802 AGCAGA-CAGAAGAAATCAAGTCCTATCTTCCTAAGCAGTAGTGA
1 AGCAGATC-GAAGACGGCAA-TCCTATCTCCCTAAGCAGTAGTGA
24983846 AGCAGAT
1 AGCAGAT
24983853 TTAAGCCACA
Statistics
Matches: 104, Mismatches: 30, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
43 33 0.32
44 71 0.68
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (43 bp):
AGCAGATCGAAGACGGCAATCCTATCTCCCTAAGCAGTAGTGA
Found at i:24985544 original size:22 final size:22
Alignment explanation
Indices: 24985519--24985575 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
24985509 TTAATTTTCA
24985519 TATATATATATATATACCTTAT
1 TATATATATATATATACCTTAT
* * * *
24985541 TATAAATATCTTTATATCTTAT
1 TATATATATATATATACCTTAT
*
24985563 TATGTATATATAT
1 TATATATATATAT
24985576 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATATATATATATACCTTAT
Found at i:24985586 original size:26 final size:25
Alignment explanation
Indices: 24985537--24985586 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
24985527 TATATATACC
*
24985537 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
24985562 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
24985587 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:24986465 original size:107 final size:106
Alignment explanation
Indices: 24986343--24986545 Score: 309
Period size: 107 Copynumber: 1.9 Consensus size: 106
24986333 AAAAATAATA
* * *
24986343 AAGGCAATGTTTTGCGTTTGGAGATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGTTTTTTT
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCG-ATTTCT
* * *
24986408 CGTTCT-ATCAAATAGTCAAATATCCTTTTAAAATTTTGAAGT
65 CGTT-TGACCAAATAGCCAAATATCCTCTTAAAATTTTGAAGT
* *
24986450 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAGATGTGCCCTAATGTGCTGGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTC
24986515 GTTTGACCAAATAGCCAAATATCCTCTTAAA
66 GTTTGACCAAATAGCCAAATATCCTCTTAAA
24986546 TCTTAATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 1 0.01
106 31 0.36
107 55 0.63
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (106 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTCTC
GTTTGACCAAATAGCCAAATATCCTCTTAAAATTTTGAAGT
Found at i:24989819 original size:20 final size:21
Alignment explanation
Indices: 24989777--24989819 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
24989767 ATTTAATGTT
24989777 AAATTTCCTCTTTTCTAATAC
1 AAATTTCCTCTTTTCTAATAC
* *
24989798 AAATTTGCTCTTTT-TCATAC
1 AAATTTCCTCTTTTCTAATAC
24989818 AA
1 AA
24989820 TGCCTAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.30, C:0.21, G:0.02, T:0.47
Consensus pattern (21 bp):
AAATTTCCTCTTTTCTAATAC
Found at i:24991808 original size:24 final size:25
Alignment explanation
Indices: 24991781--24991832 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
24991771 ATGTATGAAT
24991781 TATAAAATATAT-AAAATATGTACA
1 TATAAAATATATAAAAATATGTACA
* * *
24991805 TAT-ATATATGTAAAAATATGTATA
1 TATAAAATATATAAAAATATGTACA
24991829 TATA
1 TATA
24991833 TATTTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (25 bp):
TATAAAATATATAAAAATATGTACA
Found at i:24991842 original size:24 final size:24
Alignment explanation
Indices: 24991787--24991842 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
24991777 GAATTATAAA
24991787 ATATAT-AAAATATGTACATATAT
1 ATATATAAAAATATGTACATATAT
* *
24991810 ATATGTAAAAATATGTATATATAT
1 ATATATAAAAATATGTACATATAT
*
24991834 ATTTATAAA
1 ATATATAAA
24991843 GGTTAGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (24 bp):
ATATATAAAAATATGTACATATAT
Found at i:24995846 original size:3 final size:3
Alignment explanation
Indices: 24995838--24995868 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
24995828 TTGGTTGCCT
24995838 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
24995869 CATCATCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:25001806 original size:29 final size:30
Alignment explanation
Indices: 25001774--25001840 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
25001764 TATTTTCTAC
*
25001774 ATGTAATTATTTTATTGGGTTACTTAAGT-
1 ATGTAATTATTTTATTGAGTTACTTAAGTA
25001803 ATGTAATTATTTTATTGAGTTACTTAAGTA
1 ATGTAATTATTTTATTGAGTTACTTAAGTA
25001833 ATG-AATTA
1 ATGTAATTA
25001841 CATCTAAACA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 33 0.92
30 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (30 bp):
ATGTAATTATTTTATTGAGTTACTTAAGTA
Found at i:25007350 original size:14 final size:14
Alignment explanation
Indices: 25007331--25007379 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
25007321 TAATTATAAC
25007331 TATTTAAATAATAT
1 TATTTAAATAATAT
25007345 TATTTAAATAATTAT
1 TATTTAAATAA-TAT
*
25007360 AATATTAAATGAATAAT
1 TAT-TTAAAT-AAT-AT
25007377 TAT
1 TAT
25007380 GTGTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 11 0.38
15 5 0.17
16 7 0.24
17 6 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
TATTTAAATAATAT
Found at i:25007354 original size:32 final size:32
Alignment explanation
Indices: 25007318--25007379 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 32
25007308 TTTTTTTGAA
25007318 AAATAATTATAACTATTTAAAT-AAT-ATTATTT
1 AAATAATTATAA-TA-TTAAATGAATAATTATTT
25007350 AAATAATTATAATATTAAATGAATAATTAT
1 AAATAATTATAATATTAAATGAATAATTAT
25007380 GTGTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 6 0.21
31 5 0.18
32 17 0.61
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (32 bp):
AAATAATTATAATATTAAATGAATAATTATTT
Found at i:25012625 original size:25 final size:27
Alignment explanation
Indices: 25012593--25012649 Score: 100
Period size: 25 Copynumber: 2.2 Consensus size: 27
25012583 TTTTAATTTC
25012593 AAAATGTTACATTAATAAA-TTAAAA-
1 AAAATGTTACATTAATAAATTTAAAAG
25012618 AAAATGTTACATTAATAAATTTAAAAG
1 AAAATGTTACATTAATAAATTTAAAAG
25012645 AAAAT
1 AAAAT
25012650 TTAATGAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 19 0.63
26 6 0.20
27 5 0.17
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAATGTTACATTAATAAATTTAAAAG
Found at i:25014220 original size:16 final size:16
Alignment explanation
Indices: 25014201--25014231 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25014191 ATATCTTGGC
*
25014201 ATATATATTTTTATTA
1 ATATATATCTTTATTA
25014217 ATATATATCTTTATT
1 ATATATATCTTTATT
25014232 TTGCATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATATATCTTTATTA
Found at i:25016606 original size:5 final size:5
Alignment explanation
Indices: 25016596--25016625 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
25016586 ACCTGCGTGT
25016596 CGACC CGACC CGACC CGACC CGACC CGACC
1 CGACC CGACC CGACC CGACC CGACC CGACC
25016626 AGGAGATCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:25018856 original size:10 final size:10
Alignment explanation
Indices: 25018841--25018889 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
25018831 GAAGAGAAGG
25018841 AAAAAAAAGA
1 AAAAAAAAGA
25018851 AAAAAAAAGA
1 AAAAAAAAGA
*
25018861 AAAGTTAAAAGA
1 AAA--AAAAAGA
* *
25018873 ACATAAAAGA
1 AAAAAAAAGA
25018883 AAAAAAA
1 AAAAAAA
25018890 TTAAATTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 25 0.76
12 8 0.24
ACGTcount: A:0.82, C:0.02, G:0.10, T:0.06
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:25021788 original size:13 final size:13
Alignment explanation
Indices: 25021765--25021798 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
25021755 TTAAATAAAA
25021765 ATAAT-TCAAACC
1 ATAATATCAAACC
25021777 ATAATATCAAACC
1 ATAATATCAAACC
25021790 ATAATATCA
1 ATAATATCA
25021799 TGTTTTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (13 bp):
ATAATATCAAACC
Found at i:25022531 original size:4 final size:4
Alignment explanation
Indices: 25022500--25022547 Score: 53
Period size: 4 Copynumber: 11.5 Consensus size: 4
25022490 CAACAAATGA
*
25022500 AAAG AAATG AAAG AAA- AACAA AATAG AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAA-G AAAG AAAG AA-AG AA-AG AAAG AAAG AAAG AAAG AAAG AA
25022548 GAAGAAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 2 0.05
4 28 0.72
5 9 0.23
ACGTcount: A:0.75, C:0.02, G:0.19, T:0.04
Consensus pattern (4 bp):
AAAG
Found at i:25022551 original size:3 final size:3
Alignment explanation
Indices: 25022543--25022595 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
25022533 GAAAGAAAGA
25022543 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
25022591 AAG AA
1 AAG AA
25022596 AACCTTAGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:25027215 original size:25 final size:26
Alignment explanation
Indices: 25027176--25027224 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
25027166 CAATAAATGA
25027176 AAAGAAATGAAAGAAAAACAAAACAT
1 AAAGAAATGAAAGAAAAACAAAACAT
* *
25027202 AAAGAAA-GAAAGAAGAAGAAAAC
1 AAAGAAATGAAAGAAAAACAAAAC
25027225 GTTAGAGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.73, C:0.06, G:0.16, T:0.04
Consensus pattern (26 bp):
AAAGAAATGAAAGAAAAACAAAACAT
Found at i:25033199 original size:21 final size:21
Alignment explanation
Indices: 25033173--25033213 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25033163 ATCTGCTCAA
* *
25033173 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
25033194 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
25033214 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:25038188 original size:13 final size:13
Alignment explanation
Indices: 25038170--25038194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25038160 AATCTAGCCC
25038170 CTTTTACAAGAAA
1 CTTTTACAAGAAA
25038183 CTTTTACAAGAA
1 CTTTTACAAGAA
25038195 GTCACGTCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
CTTTTACAAGAAA
Found at i:25042932 original size:30 final size:30
Alignment explanation
Indices: 25042891--25043017 Score: 132
Period size: 30 Copynumber: 4.3 Consensus size: 30
25042881 GTGTTTTAAG
* * *
25042891 AAAATTGCATTTTTACCCCTAAAATTTTTC
1 AAAATTACATTTTAACCCCTAAAATTTCTC
*
25042921 AAAATTACATTTAAACCCCTAAACATTT-T-
1 AAAATTACATTTTAACCCCTAAA-ATTTCTC
* * * *
25042950 GAAATTACATTTCAATCCCTAAAAGTTCTC
1 AAAATTACATTTTAACCCCTAAAATTTCTC
* * *
25042980 AAAATTACATTTTGACCCCTAAACTTTCTA
1 AAAATTACATTTTAACCCCTAAAATTTCTC
25043010 AAAATTAC
1 AAAATTAC
25043018 GTTTCGACCC
Statistics
Matches: 80, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 3 0.04
29 21 0.26
30 52 0.65
31 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCTAAAATTTCTC
Found at i:25043027 original size:30 final size:30
Alignment explanation
Indices: 25042891--25043032 Score: 128
Period size: 30 Copynumber: 4.8 Consensus size: 30
25042881 GTGTTTTAAG
* ** *
25042891 AAAATTGCATTTTTACCCCTAAAATTTTTC
1 AAAATTACATTTCAACCCCTAAAATTTCTC
*
25042921 AAAATTACATTTAAACCCCTAAACATTT-T-
1 AAAATTACATTTCAACCCCTAAA-ATTTCTC
* * *
25042950 GAAATTACATTTCAATCCCTAAAAGTTCTC
1 AAAATTACATTTCAACCCCTAAAATTTCTC
** * *
25042980 AAAATTACATTTTGACCCCTAAACTTTCTA
1 AAAATTACATTTCAACCCCTAAAATTTCTC
* *
25043010 AAAATTACGTTTCGACCCC-AAAA
1 AAAATTACATTTCAACCCCTAAAA
25043033 GTTTTGCTGC
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
28 3 0.03
29 24 0.26
30 61 0.66
31 4 0.04
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.35
Consensus pattern (30 bp):
AAAATTACATTTCAACCCCTAAAATTTCTC
Found at i:25043033 original size:59 final size:58
Alignment explanation
Indices: 25042891--25043035 Score: 148
Period size: 59 Copynumber: 2.4 Consensus size: 58
25042881 GTGTTTTAAG
* ** * *
25042891 AAAATTGCATTTTTACCCCTAAAATTTTTCAAAATTACATTTAAACCCCTAAACATTTT
1 AAAATTACATTTCAACCCC-AAAAGTTCTCAAAATTACATTTAAACCCCTAAACATTTT
* * **
25042950 GAAATTACATTTCAATCCCTAAAAGTTCTCAAAATTACATTTTGACCCCTAAAC-TTTCT
1 AAAATTACATTTCAA-CCCCAAAAGTTCTCAAAATTACATTTAAACCCCTAAACATTT-T
* *
25043009 AAAAATTACGTTTCGACCCCAAAAGTT
1 -AAAATTACATTTCAACCCCAAAAGTT
25043036 TTGCTGCCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
58 3 0.04
59 52 0.74
60 15 0.21
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (58 bp):
AAAATTACATTTCAACCCCAAAAGTTCTCAAAATTACATTTAAACCCCTAAACATTTT
Found at i:25043413 original size:20 final size:19
Alignment explanation
Indices: 25043385--25043425 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
25043375 AACAAAAAGC
* *
25043385 AAAAGAGAAAGAGAAAGAAA
1 AAAAAAGAAAAAG-AAGAAA
25043405 AAAAAAGAAAAAGAAGAAA
1 AAAAAAGAAAAAGAAGAAA
25043424 AA
1 AA
25043426 GAGAGGAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAAAGAAGAAA
Found at i:25043662 original size:20 final size:19
Alignment explanation
Indices: 25043637--25043680 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
25043627 CACATCAGCC
25043637 CAGCAGCCCAAATAAAAAAA
1 CAGCAGCCC-AATAAAAAAA
**
25043657 CAGCAGCCCCCTAAAAAAA
1 CAGCAGCCCAATAAAAAAA
25043676 CAGCA
1 CAGCA
25043681 AACAGCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.52, C:0.32, G:0.11, T:0.05
Consensus pattern (19 bp):
CAGCAGCCCAATAAAAAAA
Found at i:25043862 original size:10 final size:9
Alignment explanation
Indices: 25043843--25043875 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
25043833 GCCCAGCAGC
25043843 AGAAAAAAA
1 AGAAAAAAA
25043852 AGAAGAAAAA
1 AGAA-AAAAA
25043862 AG-AAAAAA
1 AGAAAAAAA
25043870 AGAAAA
1 AGAAAA
25043876 GGGTTCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 7 0.32
9 8 0.36
10 7 0.32
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:25044042 original size:5 final size:5
Alignment explanation
Indices: 25044032--25044070 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
25044022 CATTTATATT
* *
25044032 TTTAA TTTAA TTTAA TTTAA TTTCAA TTTTA TTTTA TTT
1 TTTAA TTTAA TTTAA TTTAA TTT-AA TTTAA TTTAA TTT
25044071 TAAATAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (5 bp):
TTTAA
Found at i:25044065 original size:26 final size:27
Alignment explanation
Indices: 25044031--25044084 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
25044021 GCATTTATAT
*
25044031 TTTTAA-TTTAATTTAATTTAATTTCAA
1 TTTTAATTTTAATTTAA-ATAATTTCAA
*
25044058 TTTT-ATTTTATTTTAAATAATTTCAA
1 TTTTAATTTTAATTTAAATAATTTCAA
25044084 T
1 T
25044085 AAATAAGGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTTAATTTTAATTTAAATAATTTCAA
Found at i:25044243 original size:19 final size:19
Alignment explanation
Indices: 25044204--25044243 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
25044194 ATATTCTAAC
** *
25044204 ATTCTCGTGTTTTTTTTAA
1 ATTCTCGTGTTTTAATAAA
25044223 ATTCTCGTGTTTTAATAAA
1 ATTCTCGTGTTTTAATAAA
25044242 AT
1 AT
25044244 CACGATTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (19 bp):
ATTCTCGTGTTTTAATAAA
Found at i:25046205 original size:107 final size:107
Alignment explanation
Indices: 25045926--25046244 Score: 471
Period size: 107 Copynumber: 3.0 Consensus size: 107
25045916 CCATACTTTG
* *
25045926 AAGTTTT-AAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
* * *
25045990 TGTTTCCTCGATTTTCCAGACGCGAAGTATTGCCTTATTTTAA
66 CGATTCCTCGATTTTCCAAACGCGAA-TATTGCCTTATTTTAA
* * *
25046033 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATTGAAACCTAACACGTTAGGGCA
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
25046098 CGATTCCTCGATTTTCCAAACGCGAGATATTGCCTTATTTTAA
66 CGATTCCTCGATTTTCCAAACGCGA-ATATTGCCTTATTTTAA
* *
25046141 AAG-TTTAAAAATGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCA
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
* * * *
25046205 CGCTTTCTCGATTTTTCGAACGCGAAATATTGCCTTATTT
66 CGATTCCTCGATTTTCCAAACGCG-AATATTGCCTTATTT
25046245 AGCAAAACCT
Statistics
Matches: 192, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
107 97 0.51
108 94 0.49
109 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (107 bp):
AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
CGATTCCTCGATTTTCCAAACGCGAATATTGCCTTATTTTAA
Found at i:25048657 original size:44 final size:44
Alignment explanation
Indices: 25048625--25049187 Score: 612
Period size: 44 Copynumber: 13.4 Consensus size: 44
25048615 CTGCAACTTC
*
25048625 AGGGAGATAGGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
25048668 AGGGAGATAAGA-CTGG----ATACGATCTGCTCCACTACTACTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
* * *
25048708 AGGGAGATAAGATCGGGTTTCGTTCGTCTGTTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
** *
25048752 AGGGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
*
25048792 AGGGAGATAAAATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
25048836 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* ** *
25048880 AGAGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
25048920 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* ** * *
25048964 AGGGAGATAATA-C---TTGATAT-GATCTGCTCTACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
25049004 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* ** *
25049048 AGAGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
25049088 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
** *
25049132 AGGGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
25049172 AGGGAGATAAGATCTG
1 AGGGAGATAAGATCTG
25049188 TAACCTTCAA
Statistics
Matches: 437, Mismatches: 48, Indels: 70
0.79 0.09 0.13
Matches are distributed among these distances:
39 8 0.02
40 192 0.44
41 8 0.02
43 19 0.04
44 203 0.46
45 7 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (44 bp):
AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
Found at i:25048981 original size:212 final size:211
Alignment explanation
Indices: 25048625--25049183 Score: 762
Period size: 212 Copynumber: 2.7 Consensus size: 211
25048615 CTGCAACTTC
* * *
25048625 AGGGAGATAGGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATACG
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATATG
* * *
25048689 ATCTGCTCCACTACTACTTAGGGAGATAAGATCGGGTTTCGTTCGTCTGTTCCACTACTGCTTAG
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC-GGTTTCTTTCGTCTGCTCCACTACTGCTTAG
*
25048754 GGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGGTTTCTTTCGT
130 GGAGATAAGACTTGATATGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGGTTTCTTTCGT
25048819 CTGCTCCACTACTGCTT
195 CTGCTCCACTACTGCTT
* *
25048836 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGTG
1 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATATG
25048901 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAG
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC-GGTTTCTTTCGTCTGCTCCACTACTGCTTAG
* * *
25048966 GGAGATAATACTTGATATGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGT
130 GGAGATAAGACTTGATATGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGGTTTCTTTCGT
25049031 CTGCTCCACTACTGCTT
195 CTGCTCCACTACTGCTT
* ** * *
25049048 AGAGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTT
1 AGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTG
* * ** *
25049108 CTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TTGATGT-GATCTGCTCCACTACT
61 ATAT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGTTTCTTTCG-TCTGCTCCACTACT
25049168 GCTTAGGGAGATAAGA
124 GCTTAGGGAGATAAGA
25049184 TCTGTAACCT
Statistics
Matches: 315, Mismatches: 25, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
207 2 0.01
208 66 0.21
209 1 0.00
211 14 0.04
212 231 0.73
213 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (211 bp):
AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATATG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
GAGATAAGACTTGATATGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGGTTTCTTTCGTC
TGCTCCACTACTGCTT
Found at i:25049224 original size:84 final size:84
Alignment explanation
Indices: 25048650--25049187 Score: 713
Period size: 84 Copynumber: 6.4 Consensus size: 84
25048640 GTTTCTTTCG
* * *
25048650 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGG----ATACGATCTGCTCCACTACTACTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAG
** *
25048710 GGAGATAAGATCGGGTTTCGTTCG-
65 GGAGATAAGA-CTTG-AT-G-T-GA
* ** *
25048734 TCTGTTCCACTACTGCTTAGGGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAG
* ** *
25048794 GGAGATAAAATCTGGTTTCTTTCG-
65 GGAGATAAGA-C---TTGATGT-GA
*
25048818 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
25048883 GAGATAAGACTTGATGTGA
66 GAGATAAGACTTGATGTGA
25048902 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
* *
25048967 GAGATAATACTTGATATGA
66 GAGATAAGACTTGATGTGA
* *
25048986 TCTGCTCTACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
25049051 GAGATAAGACTTGATGTGA
66 GAGATAAGACTTGATGTGA
25049070 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
25049135 GAGATAAGACTTGATGTGA
66 GAGATAAGACTTGATGTGA
25049154 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
25049188 TAACCTTCAA
Statistics
Matches: 412, Mismatches: 29, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
83 1 0.00
84 375 0.91
85 1 0.00
86 1 0.00
87 1 0.00
88 32 0.08
89 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (84 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
GAGATAAGACTTGATGTGA
Found at i:25049224 original size:128 final size:128
Alignment explanation
Indices: 25048650--25049187 Score: 708
Period size: 128 Copynumber: 4.3 Consensus size: 128
25048640 GTTTCTTTCG
* * *
25048650 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGGATAC---GATCTGCTCCACTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTACTTTCATCTGCTCCACTACTGCTTAGG
* * *
25048711 GAGATAAGATCGGGTTTCGTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
66 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * *
25048774 TCTGCTCCACTACTGCTTAGGGAGATAAAATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTACTTTCATCTGCTCCACTACTGCTTAGG
*
25048839 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGA
66 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* *
25048902 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTACTTTCATCTGCTCCACTACTGCTTAGG
* ** * * ** *
25048967 GAGATAATA-C---TTGATAT-GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
66 GAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGATG
25049027 TCG-
126 T-GA
* * * *
25049030 TCTGCTCCACTACTGCTTAGAGAGATAAGA-CT--TGA-TGTGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTACTTTCATCTGCTCCACTACTGCTTAGG
25049091 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
66 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
25049154 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
25049188 TAACCTTCAA
Statistics
Matches: 361, Mismatches: 35, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
123 2 0.01
124 125 0.35
125 11 0.03
127 4 0.01
128 217 0.60
129 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (128 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTACTTTCATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
Found at i:25049332 original size:95 final size:95
Alignment explanation
Indices: 25049192--25050044 Score: 1266
Period size: 95 Copynumber: 9.0 Consensus size: 95
25049182 GATCTGTAAC
**** * *
25049192 CTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTA-CTGGCTTCAATGTACTCCACTGTAA
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATC-GGCTTCAATGTACTCCACTGTAG
* *
25049256 TCTCAGGGAGGTAAAATCTGCCATCTTCGAT
65 TCACAGGGAGGTAAAATCTGCCATCTTCAAT
* **
25049287 CTGCTTTCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
*
25049352 CACAGGGAGGTAAAATCTGCCATCTTTAAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
*
25049382 CTTCAATCTATTCCACTGCCAACCAAGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
* *
25049447 CACAGGAAGGTAAAATCTGCCATCTTCGAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* *
25049477 CTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGTTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
* **
25049542 --TAGGGAGGTAAAATCTGCCATCTTTGAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* * * *
25049570 ATTCAATCTATTCCACTACTAATCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
* **
25049635 --CAGGGAGGTAAAATTTGCCATCTTTGAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* * *
25049663 CTTTAATCTATTCCACTGCTAACTAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
* * *
25049728 CACAGTGAGGTAAAATCTGCCATTTTTAAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* * *
25049758 CTTCAATCTATTCCACTGCCAACCAGAGAAATAGAATTATCAGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
*
25049823 CACAGGCAGGTAAAATCTGCCATCTTCAAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* *
25049853 CTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATTTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
* *
25049918 CATAGGGAGGTAAAATCTACCATCTTCAAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
* *
25049948 CTTCAATCTATTCTACTGCCAACGAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
1 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
*
25050013 CACAGGGAGGTAAAATCTACCATCTTCAAT
66 CACAGGGAGGTAAAATCTGCCATCTTCAAT
25050043 CT
1 CT
25050045 GCTTCGCTAC
Statistics
Matches: 692, Mismatches: 63, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
93 172 0.25
95 519 0.75
96 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (95 bp):
CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
CACAGGGAGGTAAAATCTGCCATCTTCAAT
Found at i:25050099 original size:376 final size:374
Alignment explanation
Indices: 25049215--25050044 Score: 1139
Period size: 376 Copynumber: 2.2 Consensus size: 374
25049205 CACTGTTGCC
* * *
25049215 CAGGGAGATAGAACTA-CTGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCA
1 CAGGGAGATAGAATTATC-GGCTTCAATGTACTCCACTGT-A-GTCAGGGAGGTAAAATCTACCA
* * *** * * **
25049279 TCTTCGATCTGCTT--TCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACT
63 TCTTCAATCT--TTAAGCTA-TCCAC-AATAACTAGGAAGATAGAATTATAAGCTTCAATGTACT
25049342 CCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTTAATCTTCAATCTATTCCACTGCCAACCA
124 CCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTTAATCTTCAATCTATTCCACTGCCAACCA
* *
25049407 AGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGCCATCT
189 AGGAAATAGAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGCCATCT
* * *
25049472 TCGATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGTTTCAATGTACTCCACT
254 TCAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACT
* ** *
25049537 GTAGTTAGGGAGGTAAAATCTGCCATCTTTGATATTCAATCTATTCCACTACTAAT
319 GTAGTTAGGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTACCAAT
* *
25049593 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATTTGCCATCT
1 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCT
** * ** * **
25049658 TTGATCTTTAATCTATTCCACTGCTAACTAGGGAGATAGAATTATCGGCTTCAATGTACTCCACT
66 TCAATCTTTAAGCTA-TCCAC-AATAACTAGGAAGATAGAATTATAAGCTTCAATGTACTCCACT
* *
25049723 GTAGTCACAGTGAGGTAAAATCTGCCATTTTTAATCTTCAATCTATTCCACTGCCAACC-AGAGA
129 GTAGTCACAGGGAGGTAAAATCTGCCATCTTTAATCTTCAATCTATTCCACTGCCAACCAAG-GA
*
25049787 AATAGAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAA
193 AATAGAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGCCATCTTCAA
* *
25049852 TCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATTTACTCCACTGTAG
258 TCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAG
* * *
25049917 TCATAGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCTACTGCCAA-
323 T--TAGGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTACCAAT
25049970 CGAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCA
1 C-AGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTACCA
25050035 TCTTCAATCT
63 TCTTCAATCT
25050045 GCTTCGCTAC
Statistics
Matches: 416, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
374 2 0.00
375 2 0.00
376 263 0.63
377 2 0.00
378 120 0.29
379 1 0.00
380 26 0.06
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (374 bp):
CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTACCATCT
TCAATCTTTAAGCTATCCACAATAACTAGGAAGATAGAATTATAAGCTTCAATGTACTCCACTGT
AGTCACAGGGAGGTAAAATCTGCCATCTTTAATCTTCAATCTATTCCACTGCCAACCAAGGAAAT
AGAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGCCATCTTCAATCT
TCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTTA
GGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTACCAAT
Found at i:25050128 original size:231 final size:229
Alignment explanation
Indices: 25049850--25050269 Score: 687
Period size: 231 Copynumber: 1.8 Consensus size: 229
25049840 TGCCATCTTC
* * *
25049850 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATTTACTCCACTGT
1 AATCTTCAATCTATTCCACTGCCAAACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGT
* * *
25049915 AGTCATAGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCTACTGCCAACGAGGGAGAT
66 AGTCATAGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAGAT
25049980 AGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATCT
131 AGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATCT
25050045 GCTTCGCTACCAAATATAGGAAGGCAAGATCTGT
196 GCTTCGCTACCAAATATAGGAAGGCAAGATCTGT
* * *
25050079 AATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCTACT
1 AATCTTCAATCTATTCCACTGCC-AA-ACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACT
** *
25050144 GTAGTCATAGGGAGGTAAAATCTGTCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAG
64 GTAGTCATAGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAG
* * *
25050209 ATAGAATTATTGGCTTCAATGTACTCCACTGTAGTTACAGGGAGGTAAAATCTGCCATCTT
129 ATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTT
25050270 TAATATTCAA
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
229 22 0.13
230 2 0.01
231 150 0.86
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (229 bp):
AATCTTCAATCTATTCCACTGCCAAACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGT
AGTCATAGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAGAT
AGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATCT
GCTTCGCTACCAAATATAGGAAGGCAAGATCTGT
Found at i:25050182 original size:421 final size:414
Alignment explanation
Indices: 25049661--25050502 Score: 1272
Period size: 421 Copynumber: 2.0 Consensus size: 414
25049651 GCCATCTTTG
* * *
25049661 ATCTTTAATCTATTCCACTGCTAACTAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAAATAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* *
25049726 GTCACAGTGAGGTAAAATCTGCCATTTTTAATCTTCAATCTATTCCACTGCCAACCAGAGAAATA
66 GTCACAGGGAGGTAAAATCTGCCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAAATA
*
25049791 GAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTT
131 GAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATATT
* * *
25049856 TAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATTTACTCCACTGTAGTCAT
196 CAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAC
* * * *
25049921 AGGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCTACTGCCA-ACGAGGGAGATAGAAT
261 AGAGAGGTAAAATCTACCATCTTCAATC-T-AATCCA--CTACCG-AATAC-AGGGAGATAGAAT
*
25049985 TATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTC
320 TATCGGCTTCAATGTACTCCACTATAGTCACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTC
*
25050050 GCTACCAAATATAGGAAGGCAAGATCTGTA
385 GCTACCAAATACAGGAAGGCAAGATCTGTA
* * *
25050080 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCTACTG
1 ATCTTCAATCTATTCCACTGCCAAAT--AGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * *
25050145 TAGTCATAGGGAGGTAAAATCTGTCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAGA
64 TAGTCACAGGGAGGTAAAATCTGCCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAAA
** * * *
25050210 TAGAATTATTGGCTTCAATGTACTCCACTGTAGTTACAGGGAGGTAAAATCTGCCATCTTTAATA
129 TAGAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATA
* *
25050275 TTCAATCTATTCCACTGCCAATCAGGGAGATAGAATTATCGGCTTCAATGTACTCTACTGTAGTC
194 TTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTC
* * * * *
25050340 ACAGAGAGGTAAAATCTGCTATCTTCGATCTATTCCACTACCGAATACAGGGAGATAGAGTTATC
259 ACAGAGAGGTAAAATCTACCATCTTCAATCTAATCCACTACCGAATACAGGGAGATAGAATTATC
* * *
25050405 GGCTTCAATGTACTCCACTATAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTG
324 GGCTTCAATGTACTCCACTATAGTCACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTCGCTA
25050470 CCAAATACAGGAAGGCAAGATCTGTA
389 CCAAATACAGGAAGGCAAGATCTGTA
*
25050496 ATTTTCA
1 ATCTTCA
25050503 GTCTGCTCCG
Statistics
Matches: 383, Mismatches: 37, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
416 109 0.28
417 7 0.02
419 27 0.07
420 1 0.00
421 239 0.62
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (414 bp):
ATCTTCAATCTATTCCACTGCCAAATAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAAATA
GAATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATATT
CAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAC
AGAGAGGTAAAATCTACCATCTTCAATCTAATCCACTACCGAATACAGGGAGATAGAATTATCGG
CTTCAATGTACTCCACTATAGTCACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTCGCTACC
AAATACAGGAAGGCAAGATCTGTA
Found at i:25050189 original size:326 final size:324
Alignment explanation
Indices: 25049754--25050370 Score: 966
Period size: 326 Copynumber: 1.9 Consensus size: 324
25049744 CTGCCATTTT
*
25049754 TAATCTTCAATCTATTCCACTGCCAACCAGAGAAATAGAATTATCAGCTTCAATGTACTCCACTG
1 TAATCTTCAATCTATTCCACTGCCAAACAGAGAAATAGAATTATCAGCTTCAATGTACTCCACTG
* *
25049819 TAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTTTAATCTATTCCACTGCCAACCAGGGAGA
66 TAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAGA
* * *
25049884 TAGAATTATCGGCTTCAATTTACTCCACTGTAGTCATAGGGAGGTAAAATCTACCATCTTCAATC
131 TAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATA
*
25049949 TTCAATCTATTCTACTGCCAA-CGAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
196 TTCAATCTATTCCACTGCCAATC-AGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
*
25050013 CACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTCGCTACCAAATATAGGAAGGCAAGATCTG
260 CACAGAGAGGTAAAATCTACCATCTTCAATCTGCTTCGCTACCAAATATAGGAAGGCAAGATCTG
* * * * * *
25050078 TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCTAC
1 TAATCTTCAATCTATTCCACTGCC-AA-ACAGAGAAATAGAATTATCAGCTTCAATGTACTCCAC
* * * *
25050143 TGTAGTCATAGGGAGGTAAAATCTGTCATTTTCAATCTTCAATCTATTCCACTGCCAACCAGAGA
64 TGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGA
* * * *
25050208 GATAGAATTATTGGCTTCAATGTACTCCACTGTAGTTACAGGGAGGTAAAATCTGCCATCTTTAA
129 GATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAA
*
25050273 TATTCAATCTATTCCACTGCCAATCAGGGAGATAGAATTATCGGCTTCAATGTACTCTACTGTAG
194 TATTCAATCTATTCCACTGCCAATCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAG
* * *
25050338 TCACAGAGAGGTAAAATCTGCTATCTTCGATCT
259 TCACAGAGAGGTAAAATCTACCATCTTCAATCT
25050371 ATTCCACTAC
Statistics
Matches: 264, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
324 24 0.09
325 2 0.01
326 237 0.90
327 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (324 bp):
TAATCTTCAATCTATTCCACTGCCAAACAGAGAAATAGAATTATCAGCTTCAATGTACTCCACTG
TAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTTCAATCTATTCCACTGCCAACCAGAGAGA
TAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATA
TTCAATCTATTCCACTGCCAATCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTC
ACAGAGAGGTAAAATCTACCATCTTCAATCTGCTTCGCTACCAAATATAGGAAGGCAAGATCTG
Found at i:25050240 original size:95 final size:95
Alignment explanation
Indices: 25050078--25050448 Score: 499
Period size: 95 Copynumber: 4.0 Consensus size: 95
25050068 GCAAGATCTG
* * *
25050078 TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCTAC
1 TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC
*
25050143 TGTAGTCATAGGGAGGTAAAATCTGTCATTT
66 TGTAGTCACAGGGAGGTAAAATCTG-CATTT
* * *
25050174 TCAATCTTCAATCTATTCCACTGCC-AA-CCAGAGAGATAGAATTATTGGCTTCAATGTACTCCA
1 T-AATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCA
*
25050237 CTGTAGTTACAGGGAGGTAAAATCTGCCATCTT
65 CTGTAGTCACAGGGAGGTAAAATCTG-CAT-TT
* *
25050270 TAATATTCAATCTATTCCACTGCC-AAT-CAGGGAGATAGAATTATCGGCTTCAATGTACTCTAC
1 TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC
*
25050333 TGTAGTCACAGAGAGGTAAAATCTGC----
66 TGTAGTCACAGGGAGGTAAAATCTGCATTT
* * * *
25050359 T-ATCTTCGATCTATTCCACTACCGAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCAC
1 TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC
*
25050423 TATAGTCACAGGGAGGTAAAATCTGC
66 TGTAGTCACAGGGAGGTAAAATCTGC
25050449 CATCTTCGAT
Statistics
Matches: 248, Mismatches: 22, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
88 19 0.08
89 4 0.02
90 58 0.23
94 1 0.00
95 137 0.55
96 6 0.02
97 23 0.09
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (95 bp):
TAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC
TGTAGTCACAGGGAGGTAAAATCTGCATTT
Found at i:25050480 original size:90 final size:89
Alignment explanation
Indices: 25050279--25050460 Score: 294
Period size: 90 Copynumber: 2.0 Consensus size: 89
25050269 TTAATATTCA
* *
25050279 ATCTATTCCACTGCCAAT-CAGGGAGATAGAATTATCGGCTTCAATGTACTCTACTGTAGTCACA
1 ATCTATTCCACTGCCAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTATAGTCACA
*
25050343 GAGAGGTAAAATCTGCTATCTTCG
66 GAGAGGTAAAATCTGCCATCTTCG
* *
25050367 ATCTATTCCACTACCGAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTATAGTCAC
1 ATCTATTCCACTGCC-AATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTATAGTCAC
*
25050432 AGGGAGGTAAAATCTGCCATCTTCG
65 AGAGAGGTAAAATCTGCCATCTTCG
25050457 ATCT
1 ATCT
25050461 GCTTCGCTGC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
88 14 0.16
89 3 0.03
90 69 0.80
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (89 bp):
ATCTATTCCACTGCCAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTATAGTCACA
GAGAGGTAAAATCTGCCATCTTCG
Found at i:25050502 original size:326 final size:324
Alignment explanation
Indices: 25049792--25050502 Score: 754
Period size: 326 Copynumber: 2.2 Consensus size: 324
25049782 AGAGAAATAG
* * * * * * * ** * *
25049792 AATTATCAGCTTCAATGTACTCCACTGTAGTCACAGGCAGGTAAAATCTGCCATCTTCAATCTTT
1 AATTACCAGCTTCAATCTACTCTACTGAAATCACAGGAAGGCAAAATCTGTAATTTTCAATCTTC
* * *
25049857 AATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATTTACTCCACTGTAGTCATA
66 AATCTATTCCACTGCCAACCAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACA
* *
25049922 GGGAGGTAAAATCTACCATCTTCAATCTTCAATCTATTCTACTGCCAACGAGGGAGATAGAATTA
131 GGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTGCCAACGAGGGAGATAGAATTA
* * *
25049987 TCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTACCATCTTCAATCTGCTTCGC
196 TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTACCATCTTCAATCTGATTCAC
* * * *
25050052 TACCAAATATAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATA
261 TACCAAATACAGGAAGGCAAGATCTATAAGCTTCAATCTACTCCACT--CAAATACAGGGAGATA
*
25050117 G
324 A
* * * * * * * * * * *
25050118 AGTTATCGGCTTTAATGTACTCTACTGTAGTCATAGGGAGGTAAAATCTGTCATTTTCAATCTTC
1 AATTACCAGCTTCAATCTACTCTACTGAAATCACAGGAAGGCAAAATCTGTAATTTTCAATCTTC
* *
25050183 AATCTATTCCACTGCCAACCAGAGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAGTTACA
66 AATCTATTCCACTGCCAACCAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACA
* *
25050248 GGGAGGTAAAATCTGCCATCTTTAATATTCAATCTATTCCACTGCCAATC-AGGGAGATAGAATT
131 GGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTGCCAA-CGAGGGAGATAGAATT
* * * *
25050312 ATCGGCTTCAATGTACTCTACTGTAGTCACAGAGAGGTAAAATCTGCTATCTTCGATCT-ATTCC
195 ATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTACCATCTTCAATCTGATT-C
* * ** * *
25050376 ACTACCGAATACAGGGA-G-ATAGAGT-TATCGGCTTCAATGTACTCCACT-ATAGTCACAGGGA
259 ACTACCAAATACAGGAAGGCA-AGA-TCTATAAGCTTCAATCTACTCCACTCA-AAT-ACAGGGA
*
25050437 GGTAA
320 GATAA
* * * * * *
25050442 AATCTGCCATCTTCGATCTGCT-TCGCTGCCAAAT-ACAGGAAGGCAAGATCTGTAATTTTCA
1 AAT-TACCAGCTTCAATCTACTCT-ACTG--AAATCACAGGAAGGCAAAATCTGTAATTTTCA
25050503 GTCTGCTCCG
Statistics
Matches: 321, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
322 1 0.00
323 2 0.01
324 14 0.04
325 36 0.11
326 265 0.83
327 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (324 bp):
AATTACCAGCTTCAATCTACTCTACTGAAATCACAGGAAGGCAAAATCTGTAATTTTCAATCTTC
AATCTATTCCACTGCCAACCAGAGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACA
GGGAGGTAAAATCTACCATCTTCAATATTCAATCTATTCCACTGCCAACGAGGGAGATAGAATTA
TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTACCATCTTCAATCTGATTCAC
TACCAAATACAGGAAGGCAAGATCTATAAGCTTCAATCTACTCCACTCAAATACAGGGAGATAA
Found at i:25050571 original size:44 final size:45
Alignment explanation
Indices: 25050475--25050592 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 45
25050465 CGCTGCCAAA
* *
25050475 TACAGGAAGGCAAGATCT-G-TAAT-TTTCAGTCTGCTCCGCTGTCAG
1 TACAGGAAGGCAAGA-CTGGCT-ATCTTTGA-TCTGCTCCGCCGTCAG
*
25050520 TACAGGAAGGCAAGACTGGCT-TCTTTGATCTGCTTCGCCGTCAG
1 TACAGGAAGGCAAGACTGGCTATCTTTGATCTGCTCCGCCGTCAG
* * *
25050564 TATAGGAAGGCAAGATTTGCTATCTTTGA
1 TACAGGAAGGCAAGACTGGCTATCTTTGA
25050593 CCAGCTCCAC
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
44 35 0.56
45 27 0.43
46 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (45 bp):
TACAGGAAGGCAAGACTGGCTATCTTTGATCTGCTCCGCCGTCAG
Found at i:25050619 original size:44 final size:44
Alignment explanation
Indices: 25050571--25050712 Score: 114
Period size: 44 Copynumber: 3.2 Consensus size: 44
25050561 CAGTATAGGA
25050571 AGGCAAGATTTGCTATCTTTGACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATTTGCTATCTTTGACCAGCTCCACTGCAACCGATGG
* * * * * * * *
25050615 AGGCAAGGTTTTG-T-T-TTCGATCTGCTTCGCTGTTAA-TGCA-GG
1 AGGCAA-GATTTGCTATCTTTGACCAGCTCCACTG-CAACCG-ATGG
* *
25050657 AAGGCAAGATCTGCTATCTTTGACCAGCTCCACTACAACCGATGG
1 -AGGCAAGATTTGCTATCTTTGACCAGCTCCACTGCAACCGATGG
*
25050702 AGGTAAGATTT
1 AGGCAAGATTT
25050713 TACTTTCGAT
Statistics
Matches: 69, Mismatches: 20, Indels: 18
0.64 0.19 0.17
Matches are distributed among these distances:
42 19 0.28
43 11 0.16
44 20 0.29
45 19 0.28
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (44 bp):
AGGCAAGATTTGCTATCTTTGACCAGCTCCACTGCAACCGATGG
Found at i:25051644 original size:13 final size:13
Alignment explanation
Indices: 25051626--25051675 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
25051616 TTGGCCTCTC
25051626 CTTTTTC-TCTTTT
1 CTTTTTCGT-TTTT
25051639 CTTTTTCGTTTTT
1 CTTTTTCGTTTTT
* *
25051652 CTTTTCCTTTTTTT
1 CTTTTTC-GTTTTT
25051666 CTTTTT-GTTT
1 CTTTTTCGTTT
25051676 CTTTTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 3 0.10
13 17 0.55
14 11 0.35
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (13 bp):
CTTTTTCGTTTTT
Found at i:25051660 original size:32 final size:29
Alignment explanation
Indices: 25051624--25051686 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 29
25051614 CCTTGGCCTC
*
25051624 TCCTTTTTCTCTTTTCTTTTTCGTTTTTCTTT
1 TCCTTTTTCTCTTTT-TGTTTC-TTTTT-TTT
*
25051656 TCCTTTTTTTCTTTTTGTTTCTTTTTTTT
1 TCCTTTTTCTCTTTTTGTTTCTTTTTTTT
25051685 TC
1 TC
25051687 AAGTGAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 5 0.17
31 5 0.17
32 14 0.48
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (29 bp):
TCCTTTTTCTCTTTTTGTTTCTTTTTTTT
Found at i:25051663 original size:7 final size:6
Alignment explanation
Indices: 25051626--25051685 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
25051616 TTGGCCTCTC
*
25051626 CTTTTT CTCTTTT CTTTTT CGTTTTT CTTTTC CTTTTT -TTCTTT -TTGTTT
1 CTTTTT CT-TTTT CTTTTT C-TTTTT CTTTTT CTTTTT CTT-TTT CTT-TTT
25051676 CTTTTT -TTTT
1 CTTTTT CTTTT
25051686 CAAGTGAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
5 6 0.13
6 27 0.57
7 14 0.30
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:25051684 original size:19 final size:21
Alignment explanation
Indices: 25051640--25051684 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
25051630 TTCTCTTTTC
*
25051640 TTTTTCGTTTTTCTTTTCCTT
1 TTTTTCGTTTTTCGTTTCCTT
*
25051661 TTTTTC-TTTTT-GTTTCTTT
1 TTTTTCGTTTTTCGTTTCCTT
25051680 TTTTT
1 TTTTT
25051685 TCAAGTGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 11 0.50
20 5 0.23
21 6 0.27
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.82
Consensus pattern (21 bp):
TTTTTCGTTTTTCGTTTCCTT
Found at i:25052160 original size:25 final size:26
Alignment explanation
Indices: 25052132--25052188 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
25052122 TTTTCTTTTA
25052132 TTTTTGTTTTTGTT-TTTTTATTATT
1 TTTTTGTTTTTGTTGTTTTTATTATT
* * *
25052157 TTTTTATTTTTGTTGTTTTTGTTTTT
1 TTTTTGTTTTTGTTGTTTTTATTATT
25052183 TTTTTG
1 TTTTTG
25052189 CCTCCACTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.05, C:0.00, G:0.11, T:0.84
Consensus pattern (26 bp):
TTTTTGTTTTTGTTGTTTTTATTATT
Found at i:25052175 original size:9 final size:8
Alignment explanation
Indices: 25052138--25052184 Score: 51
Period size: 8 Copynumber: 5.6 Consensus size: 8
25052128 TTTATTTTTG
25052138 TTTTTGTT
1 TTTTTGTT
*
25052146 TTTTTATT
1 TTTTTGTT
25052154 ATTTTT-TT
1 -TTTTTGTT
25052162 ATTTTTGTT
1 -TTTTTGTT
25052171 GTTTTTGTT
1 -TTTTTGTT
25052180 TTTTT
1 TTTTT
25052185 TTTGCCTCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 20 0.57
9 15 0.43
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (8 bp):
TTTTTGTT
Found at i:25052178 original size:6 final size:6
Alignment explanation
Indices: 25052127--25052188 Score: 51
Period size: 6 Copynumber: 10.8 Consensus size: 6
25052117 AGGTTTTTTC
* * * *
25052127 TTTTAT TTTTGT TTTTGT TTTT-T TATTAT TTTT-T TATTT-T TGTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT T-TTTGT TTTTGT
25052173 TTTTGT TTTT-T TTTTG
1 TTTTGT TTTTGT TTTTG
25052189 CCTCCACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
5 13 0.28
6 34 0.72
ACGTcount: A:0.06, C:0.00, G:0.10, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:25053477 original size:21 final size:20
Alignment explanation
Indices: 25053437--25053479 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
25053427 TATTGTATGC
*
25053437 AATGAAATATAATGTTAATG
1 AATGAAATATAATGTCAATG
25053457 AATGAAAATATACATG-CAATG
1 AATG-AAATATA-ATGTCAATG
25053478 AA
1 AA
25053480 ATGTAATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 13 0.65
22 3 0.15
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (20 bp):
AATGAAATATAATGTCAATG
Found at i:25055469 original size:6 final size:6
Alignment explanation
Indices: 25055460--25055484 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25055450 ATGAAGTAAA
25055460 ATATGT ATATGT ATATGT ATATGT A
1 ATATGT ATATGT ATATGT ATATGT A
25055485 AATATATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATATGT
Found at i:25056408 original size:52 final size:53
Alignment explanation
Indices: 25056324--25056424 Score: 195
Period size: 52 Copynumber: 1.9 Consensus size: 53
25056314 ACTCATTCAG
25056324 CCATTCAAAGTAAAAAAAACCTCACAATCTCTCAACACTCCCCACACCTTTAA
1 CCATTCAAAGTAAAAAAAACCTCACAATCTCTCAACACTCCCCACACCTTTAA
25056377 CCATTCAAAGTAAAAAAAA-CTCACAATCTCTCAACACTCCCCACACCT
1 CCATTCAAAGTAAAAAAAACCTCACAATCTCTCAACACTCCCCACACCT
25056425 CTGACCTATG
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.60
53 19 0.40
ACGTcount: A:0.42, C:0.37, G:0.02, T:0.20
Consensus pattern (53 bp):
CCATTCAAAGTAAAAAAAACCTCACAATCTCTCAACACTCCCCACACCTTTAA
Found at i:25057364 original size:69 final size:69
Alignment explanation
Indices: 25057267--25057426 Score: 216
Period size: 69 Copynumber: 2.3 Consensus size: 69
25057257 TAAAATTAAC
*
25057267 GTAAAAGAACACAGTTTT-AAGACAACAAATCAGCCCTACACAACAACACATTAAGAACTTAAAT
1 GTAAATGAACACA-TTTTAAAGACAACAAATCAGCCCTACACAACAACACATTAAGAACTTAAAT
*
25057331 GGAAT
65 AGAAT
*** * * *
25057336 GTAAATGAACACATTTTAAAGA-ATACAAATCAGCCCTTTGCAACAGCACATTAAGCATTTAAAT
1 GTAAATGAACACATTTTAAAGACA-ACAAATCAGCCCTACACAACAACACATTAAGAACTTAAAT
25057400 AGAAT
65 AGAAT
25057405 GTAAATGAACACATTTTAAAGA
1 GTAAATGAACACATTTTAAAGA
25057427 TGCTGAGTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
68 5 0.06
69 76 0.94
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.23
Consensus pattern (69 bp):
GTAAATGAACACATTTTAAAGACAACAAATCAGCCCTACACAACAACACATTAAGAACTTAAATA
GAAT
Found at i:25058070 original size:18 final size:19
Alignment explanation
Indices: 25058047--25058083 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
25058037 ATTTACTAAC
25058047 ATGTAACT-ATCCATTCAT
1 ATGTAACTAATCCATTCAT
25058065 ATGTAACTAATCCATTCAT
1 ATGTAACTAATCCATTCAT
25058084 GTGCAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (19 bp):
ATGTAACTAATCCATTCAT
Found at i:25061933 original size:6 final size:6
Alignment explanation
Indices: 25061919--25061959 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
25061909 AGGATTACAA
* *
25061919 ATTTCC ATTTTC ATTTTC ATTTCC ATTTCC ATTTCC ATTTC
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTC
25061960 TAGAAACCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:25063666 original size:20 final size:20
Alignment explanation
Indices: 25063624--25063667 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
25063614 ATAAATACAA
* *
25063624 ATGTATTTAAAATTTGATTC
1 ATGTATTTAAAATTTAATCC
*
25063644 ATGTATTTTAAATTTAATCC
1 ATGTATTTAAAATTTAATCC
25063664 ATGT
1 ATGT
25063668 CAAATTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (20 bp):
ATGTATTTAAAATTTAATCC
Found at i:25068882 original size:30 final size:31
Alignment explanation
Indices: 25068820--25068883 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
25068810 ACTTATTTTA
*
25068820 TTGTCAATTTTGTTATTTTTTTTAAAAACAT
1 TTGTCAATTTTGTTATTTATTTTAAAAACAT
* * *
25068851 TTGTTAATTTTGTTA-TTATTTTAGAAGCAT
1 TTGTCAATTTTGTTATTTATTTTAAAAACAT
25068881 TTG
1 TTG
25068884 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.58
Consensus pattern (31 bp):
TTGTCAATTTTGTTATTTATTTTAAAAACAT
Found at i:25068987 original size:18 final size:18
Alignment explanation
Indices: 25068966--25069005 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
25068956 GAAATATTTA
*
25068966 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
25068984 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
25069002 TTTT
1 TTTT
25069006 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:25069036 original size:12 final size:12
Alignment explanation
Indices: 25069006--25069038 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
25068996 ATATATTTTT
25069006 AAAATT-ATATA
1 AAAATTAATATA
25069017 AAAA-TAATATA
1 AAAATTAATATA
25069028 AAAATTAATAT
1 AAAATTAATAT
25069039 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:25072155 original size:15 final size:15
Alignment explanation
Indices: 25072131--25072165 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
25072121 CTTTTCGGAC
*
25072131 AATGGTTTCTCTTCA
1 AATGGCTTCTCTTCA
*
25072146 AATGGCTTCTCTTGA
1 AATGGCTTCTCTTCA
25072161 AATGG
1 AATGG
25072166 TTCCTCACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (15 bp):
AATGGCTTCTCTTCA
Found at i:25074241 original size:21 final size:20
Alignment explanation
Indices: 25074209--25074247 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
25074199 TATAATTATT
*
25074209 TTGGGAATAAATATAACAAC
1 TTGGGAAAAAATATAACAAC
*
25074229 TTGGGCAAAAAATGTAACA
1 TTGGG-AAAAAATATAACA
25074248 TACATCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.23
Consensus pattern (20 bp):
TTGGGAAAAAATATAACAAC
Found at i:25074638 original size:27 final size:28
Alignment explanation
Indices: 25074608--25074664 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
25074598 ATGTTATGCT
* *
25074608 TTGTTTTAACTTA-ATTT-TACATTATAA
1 TTGTTCTAACATATATTTATAC-TTATAA
25074635 TTGTTCTAACATATATTTATACTTATAA
1 TTGTTCTAACATATATTTATACTTATAA
25074663 TT
1 TT
25074665 ATATTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 11 0.42
28 12 0.46
29 3 0.12
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.54
Consensus pattern (28 bp):
TTGTTCTAACATATATTTATACTTATAA
Found at i:25076207 original size:66 final size:68
Alignment explanation
Indices: 25076129--25076265 Score: 197
Period size: 66 Copynumber: 2.0 Consensus size: 68
25076119 TAAAAAATTG
25076129 ACAGAATCTTTTTTATAAATAATTGTTGAATAA-AA-AAATTATGACAACATATCCATCAATCCA
1 ACAGAATCTTTTTTATAAATAATTGTTGAATAATAAGAAATTATGACAACATATCCATCAATCCA
25076192 TAA
66 TAA
* * * ** *
25076195 ACAGAATTTTTTTTATAATTAATTGTTGAATAATTAAGAGATTATGACAACATATGTATCAATTC
1 ACAGAATCTTTTTTATAAATAATTGTTGAATAA-TAAGAAATTATGACAACATATCCATCAATCC
25076260 ATAA
65 ATAA
25076264 AC
1 AC
25076266 GTAGCTAGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
66 31 0.50
68 2 0.03
69 29 0.47
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (68 bp):
ACAGAATCTTTTTTATAAATAATTGTTGAATAATAAGAAATTATGACAACATATCCATCAATCCA
TAA
Found at i:25079130 original size:20 final size:20
Alignment explanation
Indices: 25079087--25079137 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
25079077 TATACTATTT
* *
25079087 TTAAAATATATA-TAATATA
1 TTAAAATAAATATTAAAATA
25079106 -T-AAATAAATATTAAAATA
1 TTAAAATAAATATTAAAATA
25079124 TTAAAATAAATATT
1 TTAAAATAAATATT
25079138 TCTTAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.30
18 7 0.26
19 1 0.04
20 11 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAAATAAATATTAAAATA
Found at i:25079273 original size:19 final size:17
Alignment explanation
Indices: 25079231--25079275 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
25079221 CTAAAATAGT
25079231 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
*
25079248 AACCAAAGTTATACAATAA
1 AA-CAAAATTA-ACAATAA
25079267 CAACAAAAT
1 -AACAAAAT
25079276 AATAGCAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 7 0.30
19 12 0.52
20 2 0.09
ACGTcount: A:0.64, C:0.16, G:0.02, T:0.18
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:25080872 original size:38 final size:38
Alignment explanation
Indices: 25080830--25080937 Score: 103
Period size: 40 Copynumber: 2.7 Consensus size: 38
25080820 AGCAATTAAG
*
25080830 TATTTTTTAAATTTAAAAATTCA-AAAAAATTAT-AAATA
1 TATTTTTTAAATTT-AAAATT-ATAAAAAAGTATAAAATA
*
25080868 TATTTTTTAAAAATTAAAATTATTAAAAAAGTATAAAATA
1 TATTTTTT-AAATTTAAAATTA-TAAAAAAGTATAAAATA
** *
25080908 TATATTTTTAATATTTTTAATTTTAAAAAA
1 TAT-TTTTTAA-ATTTAAAATTATAAAAAA
25080938 TCAATTAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
37 1 0.02
38 14 0.24
39 14 0.24
40 17 0.29
41 12 0.21
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (38 bp):
TATTTTTTAAATTTAAAATTATAAAAAAGTATAAAATA
Found at i:25080886 original size:39 final size:39
Alignment explanation
Indices: 25080830--25080918 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 39
25080820 AGCAATTAAG
* *
25080830 TATTTTTT-AAATTTAAAAATTCA-AAAAAATTAT-AAATA
1 TATTTTTTAAAAATT-AAAATT-ATAAAAAAGTATAAAATA
25080868 TATTTTTTAAAAATTAAAATTATTAAAAAAGTATAAAATA
1 TATTTTTTAAAAATTAAAATTA-TAAAAAAGTATAAAATA
25080908 TATATTTTTAA
1 TAT-TTTTTAA
25080919 TATTTTTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
37 1 0.02
38 14 0.32
39 14 0.32
40 8 0.18
41 7 0.16
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (39 bp):
TATTTTTTAAAAATTAAAATTATAAAAAAGTATAAAATA
Found at i:25081438 original size:29 final size:30
Alignment explanation
Indices: 25081339--25081481 Score: 110
Period size: 31 Copynumber: 4.7 Consensus size: 30
25081329 TTGAGAAGCT
* * * * *
25081339 CTTATTTGAGCCCTTTCAAAAAAGATTTGATT
1 CTTATTTGAGCACTTT-GAAAATG-TTTGGTC
*
25081371 CTTATTTGAGCACTTTGAAAAAGCTTTGGTC
1 CTTATTTGAGCACTTTGAAAATG-TTTGGTC
*
25081402 CTTATTTGAGAACTTTG-AAATGTTT-GTC
1 CTTATTTGAGCACTTTGAAAATGTTTGGTC
* * *
25081430 TTTCATTTGAGCACTTTTGTAAATGTTAGGTC
1 CTT-ATTTGAGCAC-TTTGAAAATGTTTGGTC
* * *
25081462 CTTATATGAGTATTTTGAAA
1 CTTATTTGAGCACTTTGAAA
25081482 GATTTGGCTT
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
28 5 0.05
29 12 0.13
30 14 0.15
31 41 0.45
32 20 0.22
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (30 bp):
CTTATTTGAGCACTTTGAAAATGTTTGGTC
Found at i:25081501 original size:60 final size:60
Alignment explanation
Indices: 25081359--25081502 Score: 150
Period size: 60 Copynumber: 2.4 Consensus size: 60
25081349 CCCTTTCAAA
* * *
25081359 AAAGATTT-GATTCTTATTTGAGCACTTTGAAAAAGCTTTGGTCCTTATTTGAGAACTTTG
1 AAAGATTTGGCTT-TTATTTGAGCACTTTGAAAAAGCTTAGGTCCTTATATGAGAACTTTG
* * * * * *
25081419 AAATG-TTTGTCTTTCATTTGAGCACTTTTGTAAATG-TTAGGTCCTTATATGAGTATTTTG
1 AAA-GATTTGGCTTTTATTTGAGCAC-TTTGAAAAAGCTTAGGTCCTTATATGAGAACTTTG
*
25081479 AAAGATTTGGCTTTTATGTGAGCA
1 AAAGATTTGGCTTTTATTTGAGCA
25081503 ACCCCTAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
59 1 0.01
60 56 0.82
61 11 0.16
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (60 bp):
AAAGATTTGGCTTTTATTTGAGCACTTTGAAAAAGCTTAGGTCCTTATATGAGAACTTTG
Found at i:25081746 original size:2 final size:2
Alignment explanation
Indices: 25081739--25081764 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25081729 TCCAAACATC
25081739 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
25081765 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:25086517 original size:22 final size:21
Alignment explanation
Indices: 25086489--25086532 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
25086479 GTACAACAAG
25086489 GGAAGAGGT-AGGAAGGAGATAT
1 GGAAGAGGTAAGG-AGGAG-TAT
25086511 GGAAGAGGTAAGGAGGAGTAT
1 GGAAGAGGTAAGGAGGAGTAT
25086532 G
1 G
25086533 AGGTGGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 14 0.67
23 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.48, T:0.14
Consensus pattern (21 bp):
GGAAGAGGTAAGGAGGAGTAT
Found at i:25088358 original size:18 final size:18
Alignment explanation
Indices: 25088337--25088385 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
25088327 AAAGCATTCT
25088337 TAAAAATATTTAAATAAA
1 TAAAAATATTTAAATAAA
* *
25088355 TAAAATTA-TTATAATGAA
1 TAAAAATATTTA-AATAAA
*
25088373 TTAAAATATTTAA
1 TAAAAATATTTAA
25088386 CATGTGTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAAAATATTTAAATAAA
Found at i:25093190 original size:4 final size:4
Alignment explanation
Indices: 25093181--25093205 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
25093171 AAAAAATAGT
25093181 TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC T
25093206 GTTTACTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:25095409 original size:18 final size:19
Alignment explanation
Indices: 25095387--25095423 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
25095377 ATATAAATCT
25095387 TAAAAAAT-TAT-TAAAAA
1 TAAAAAATATATATAAAAA
25095404 TAAAAAATATATATAAAAA
1 TAAAAAATATATATAAAAA
25095423 T
1 T
25095424 TCAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 3 0.17
19 7 0.39
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAAAATATATATAAAAA
Found at i:25112078 original size:5 final size:5
Alignment explanation
Indices: 25112042--25112162 Score: 126
Period size: 5 Copynumber: 24.4 Consensus size: 5
25112032 GCAACCCAAT
*
25112042 TTTTA TTTT- TCTTTA -TTTA TTATT- TATTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA T-TTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA
* *
25112091 TTTTA TTTTA TTTTA TTTTA TTATT- TATTA CTTTA TTTTA TTTTA TTATT-
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TT-TTA
* *
25112141 TATTA CTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TT
25112163 ATTTATTACT
Statistics
Matches: 97, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
4 11 0.11
5 80 0.82
6 6 0.06
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:25112190 original size:25 final size:25
Alignment explanation
Indices: 25112053--25112179 Score: 204
Period size: 25 Copynumber: 5.1 Consensus size: 25
25112043 TTTATTTTTC
*
25112053 TTTA-TTTATTATTTATTATTTTAT
1 TTTATTTTATTATTTATTACTTTAT
* *
25112077 TTTATTTTATT-TTATTTTATTTTAT
1 TTTATTTTATTATT-TATTACTTTAT
25112102 TTTATTTTATTATTTATTACTTTAT
1 TTTATTTTATTATTTATTACTTTAT
25112127 TTTATTTTATTATTTATTACTTTAT
1 TTTATTTTATTATTTATTACTTTAT
25112152 TTTATTTTATTATTTATTACTTTAT
1 TTTATTTTATTATTTATTACTTTAT
25112177 TTT
1 TTT
25112180 GTTTGGATAT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
24 6 0.06
25 89 0.92
26 2 0.02
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (25 bp):
TTTATTTTATTATTTATTACTTTAT
Found at i:25113536 original size:111 final size:112
Alignment explanation
Indices: 25113342--25113545 Score: 293
Period size: 111 Copynumber: 1.8 Consensus size: 112
25113332 CAAAAAATTT
* * *
25113342 TTAGGAATGTGTTGGGCTGGGTAACCGAGCTAAGGTGCTTGGCTGTTATCTCTCTTCGTGTCAAA
1 TTAGGAATATGTTGGGCTGAGTAACCGAGCTAAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAA
*
25113407 AGGTTTAATATATTCTTAAG-AAAAAAATATATATAAATATAATAAA
66 AGGTTCAATATATTCTTAAGCAAAAAAATATATATAAATATAATAAA
* * * ** * * *
25113453 TTAGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGTTTGGTTGTCATCTTTCTTCGTGTCAAA
1 TTAGGAATATGTTGGGCTGAGTAACCGAGCTAAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAA
25113518 AGGTTCAATATATTCTTAAGCAAAAAAA
66 AGGTTCAATATATTCTTAAGCAAAAAAA
25113546 AAAGAGAAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
111 73 0.91
112 7 0.09
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.34
Consensus pattern (112 bp):
TTAGGAATATGTTGGGCTGAGTAACCGAGCTAAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAA
AGGTTCAATATATTCTTAAGCAAAAAAATATATATAAATATAATAAA
Found at i:25125432 original size:43 final size:43
Alignment explanation
Indices: 25125357--25125630 Score: 236
Period size: 43 Copynumber: 6.3 Consensus size: 43
25125347 ACGACGCTAA
* * *
25125357 CTTTTGCGGCGCTTACAGAAAAAAACGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGCTTA-GGAAAAAAACGCCGCTAAAAGTCATGTT
*
25125401 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCT-AATGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAG-TCATGTT
* ***
25125444 CTTTAGCAGCGCTTAGG-AAAAAACGCCGCTAATTTTTCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAA-AAGTCATGTT
* * * *
25125487 CTTTAGCGGCACTTTGGAAAAAAATGCCGCTAAAAGTAATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAGTCATGTT
* *** *
25125530 CTTTAGTGGCGCTTCA-TCTACAAACGCCGCTAAAAGT-AGTGTT
1 CTTTAGCGGCGCTT-AGGAAAAAAACGCCGCTAAAAGTCA-TGTT
* *** *
25125573 CTTTAGTGGCGCTTCA-TCTACAAACGCCGCTAAAAGT-AGTGTT
1 CTTTAGCGGCGCTT-AGGAAAAAAACGCCGCTAAAAGTCA-TGTT
*
25125616 CTTTAGCGACGCTTA
1 CTTTAGCGGCGCTTA
25125631 TTTCACAAAC
Statistics
Matches: 200, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
42 18 0.09
43 153 0.76
44 29 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAGTCATGTT
Found at i:25126096 original size:21 final size:21
Alignment explanation
Indices: 25126072--25126132 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
25126062 AACCTCTACA
* *
25126072 TCTCTCGCTGCGGCCTCTTCT
1 TCTCTCGCTGCAGCCTCTGCT
25126093 TCTCTCGCTGCAGCCTCTGCT
1 TCTCTCGCTGCAGCCTCTGCT
* * *
25126114 TCCCTTGCTGCCGCCTCTG
1 TCTCTCGCTGCAGCCTCTG
25126133 TTTTAAGTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.02, C:0.44, G:0.20, T:0.34
Consensus pattern (21 bp):
TCTCTCGCTGCAGCCTCTGCT
Found at i:25130187 original size:27 final size:27
Alignment explanation
Indices: 25130139--25130190 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
25130129 TCTTACATTT
* *
25130139 AAATAATTAATTACCAATTTATTTAAC
1 AAATAAATAATTACCAACTTATTTAAC
**
25130166 AAATAAATAATTACTTACTTATTTA
1 AAATAAATAATTACCAACTTATTTA
25130191 TTTGTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (27 bp):
AAATAAATAATTACCAACTTATTTAAC
Found at i:25132321 original size:82 final size:82
Alignment explanation
Indices: 25132201--25132380 Score: 290
Period size: 82 Copynumber: 2.2 Consensus size: 82
25132191 GTGCTTTGGC
* *
25132201 AAAAACGCCGCTAAAGCTAAATGCATTAGCGGCGCTTAGATACAAACGCCGCTAAAGGCCAGAGA
1 AAAAACGCCGCTAAAGATAAATGCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGA
*
25132266 ATTAGTGGCGCTCAGAT
66 ATTAGCGGCGCTCAGAT
**
25132283 AAAAACGCCGCTAAAGATCCGA-GCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAG
1 AAAAACGCCGCTAAAGAT-AAATGCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAG
*
25132347 AATTAGCGGCGCTTAGAT
65 AATTAGCGGCGCTCAGAT
25132365 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
25132381 GTTTAAAAAT
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
82 90 0.99
83 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (82 bp):
AAAAACGCCGCTAAAGATAAATGCATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGAGA
ATTAGCGGCGCTCAGAT
Found at i:25132381 original size:41 final size:41
Alignment explanation
Indices: 25132201--25132381 Score: 258
Period size: 41 Copynumber: 4.4 Consensus size: 41
25132191 GTGCTTTGGC
* * *
25132201 AAAAACGCCGCTAAA-GCTAAATGCATTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAGGCCAGA-GAATTAGCGGCGCTTAGAT
* * *
25132242 ACAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGAT
1 AAAAACGCCGCTAAAGGCCAGAGAATTAGCGGCGCTTAGAT
* *
25132283 AAAAACGCCGCTAAAGATCC-GAGCATTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAG-GCCAGAGAATTAGCGGCGCTTAGAT
25132324 AAAAACGCCGCTAAAGGCCAGAGAATTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAGGCCAGAGAATTAGCGGCGCTTAGAT
25132365 AAAAACGCCGCTAAAGG
1 AAAAACGCCGCTAAAGG
25132382 TTTAAAAATC
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 2 0.02
41 116 0.94
42 6 0.05
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.15
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGCCAGAGAATTAGCGGCGCTTAGAT
Found at i:25132505 original size:40 final size:39
Alignment explanation
Indices: 25132442--25132534 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 39
25132432 TTATATAAAA
* ** *
25132442 CGCCGCTAATTC-CTATTTTTAGCGGTGCTTCTTGG-AAAT
1 CGCCGCTAATGCTCTACCTTTAGCGGCGC-T-TTGGCAAAT
*
25132481 CGCCGCTGATGCTCTACCTTTAGCGGCGCTTTGGCTAAAT
1 CGCCGCTAATGCTCTACCTTTAGCGGCGCTTTGGC-AAAT
25132521 CGCCGCTAATGCTC
1 CGCCGCTAATGCTC
25132535 GATTTTTTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.09
39 11 0.24
40 30 0.67
ACGTcount: A:0.16, C:0.29, G:0.23, T:0.32
Consensus pattern (39 bp):
CGCCGCTAATGCTCTACCTTTAGCGGCGCTTTGGCAAAT
Found at i:25135192 original size:26 final size:24
Alignment explanation
Indices: 25135126--25135192 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
25135116 TTTGCCCTCA
* *
25135126 TCTCTGCCCTCTGCTAGTTCTTTG
1 TCTCTGCCCTCTGCTGGTTATTTG
* * *
25135150 -GTCTGCCCTTTGTTGGTTATTTG
1 TCTCTGCCCTCTGCTGGTTATTTG
25135173 TTTCTCTGCCCTCTGCTGGT
1 --TCTCTGCCCTCTGCTGGT
25135193 GAGTTTATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 18 0.56
26 14 0.44
ACGTcount: A:0.03, C:0.28, G:0.21, T:0.48
Consensus pattern (24 bp):
TCTCTGCCCTCTGCTGGTTATTTG
Found at i:25135374 original size:47 final size:47
Alignment explanation
Indices: 25135320--25135411 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
25135310 CCTTTTTTAC
25135320 TTCGATTTTCTACGATTTCTCATTTTTTTAAATTTTATGCTGAAATT
1 TTCGATTTTCTACGATTTCTCATTTTTTTAAATTTTATGCTGAAATT
25135367 TTCGATTTTCTACGATTTCTCATTTTTTTAAATTTTATGCTGAAA
1 TTCGATTTTCTACGATTTCTCATTTTTTTAAATTTTATGCTGAAA
25135412 CTTAATTTCG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.24, C:0.13, G:0.09, T:0.54
Consensus pattern (47 bp):
TTCGATTTTCTACGATTTCTCATTTTTTTAAATTTTATGCTGAAATT
Found at i:25139240 original size:22 final size:22
Alignment explanation
Indices: 25139213--25139301 Score: 65
Period size: 21 Copynumber: 4.0 Consensus size: 22
25139203 ATGAAGATCA
*
25139213 TTTTTAATAATTTCT-ATAATT
1 TTTTTTATAATTTCTAATAATT
*
25139234 TTTTTTATAATTTTTAATAATT
1 TTTTTTATAATTTCTAATAATT
* * * ** *
25139256 TCTTATAATTATTAATAACTACTAT
1 T-TTTTTATAATTTCTAA-TAAT-T
25139281 TTTTTTATAATTT-TAATAATT
1 TTTTTTATAATTTCTAATAATT
25139302 ATCTAAATAA
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
21 14 0.27
22 10 0.20
23 14 0.27
24 11 0.22
25 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTTTATAATTTCTAATAATT
Found at i:25139253 original size:10 final size:10
Alignment explanation
Indices: 25139212--25139273 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
25139202 AATGAAGATC
25139212 ATTTTTAATA
1 ATTTTTAATA
25139222 ATTTCTATAAT-
1 ATTT-T-TAATA
* *
25139233 TTTTTTTATA
1 ATTTTTAATA
25139243 ATTTTTAATA
1 ATTTTTAATA
25139253 ATTTCTT-ATA
1 ATTT-TTAATA
*
25139263 ATTATTAATA
1 ATTTTTAATA
25139273 A
1 A
25139274 CTACTATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
9 5 0.12
10 27 0.64
11 6 0.14
12 4 0.10
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:25139287 original size:38 final size:38
Alignment explanation
Indices: 25139244--25139319 Score: 102
Period size: 37 Copynumber: 2.0 Consensus size: 38
25139234 TTTTTTATAA
* *
25139244 TTTTTAATAATTTCTTATAATTAT-T-AATAACTACTAT
1 TTTTTTATAATTT-TAATAATTATCTAAATAACTACTAT
*
25139281 TTTTTTATAATTTTAATAATTATCTAAATAATTACTAT
1 TTTTTTATAATTTTAATAATTATCTAAATAACTACTAT
25139319 T
1 T
25139320 AATGAATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 9 0.26
37 13 0.38
38 12 0.35
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (38 bp):
TTTTTTATAATTTTAATAATTATCTAAATAACTACTAT
Found at i:25145701 original size:13 final size:13
Alignment explanation
Indices: 25145683--25145716 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
25145673 TCCTTCCCTC
25145683 TCTCTTTTTCTCT
1 TCTCTTTTTCTCT
*
25145696 TCTCTTTTTTTCT
1 TCTCTTTTTCTCT
25145709 T-TCTTTTT
1 TCTCTTTTT
25145717 TCCCTTCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TCTCTTTTTCTCT
Found at i:25145717 original size:13 final size:15
Alignment explanation
Indices: 25145641--25145717 Score: 54
Period size: 15 Copynumber: 5.1 Consensus size: 15
25145631 AAAAAATACC
25145641 TTTT-TCTTCTCTATT
1 TTTTCTCTTCTCT-TT
*
25145656 TTTTTTCCTTCTCTTT
1 TTTTCT-CTTCTCTTT
* * *
25145672 CTCCTTC-CCTCTCTCT
1 -T-TTTCTCTTCTCTTT
25145688 TTTTCTCTTCTCTTT
1 TTTTCTCTTCTCTTT
25145703 TTTTCT-TTCT-TTT
1 TTTTCTCTTCTCTTT
25145716 TT
1 TT
25145718 CCCTTCCCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
13 5 0.10
14 7 0.14
15 18 0.36
16 10 0.20
17 8 0.16
18 2 0.04
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCTCTTCTCTTT
Found at i:25145759 original size:15 final size:14
Alignment explanation
Indices: 25145739--25145791 Score: 81
Period size: 15 Copynumber: 3.7 Consensus size: 14
25145729 CCGCCCTCTC
25145739 CTTCTCCTTCTTCTT
1 CTTCTCCTTCTT-TT
25145754 CTTCT-CTTCTTTT
1 CTTCTCCTTCTTTT
25145767 CTTCTCCTTCTATTT
1 CTTCTCCTTCT-TTT
25145782 CTTCTCCTTC
1 CTTCTCCTTC
25145792 ACTCACCGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.19
14 11 0.31
15 18 0.50
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (14 bp):
CTTCTCCTTCTTTT
Found at i:25146419 original size:23 final size:22
Alignment explanation
Indices: 25146387--25146429 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
25146377 AGTCTCTATA
25146387 TTTTTATTTTAATAATTTAATT
1 TTTTTATTTTAATAATTTAATT
* *
25146409 TTTTTACTTTTCATAGTTTAA
1 TTTTTA-TTTTAATAATTTAA
25146430 AATTTAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTATTTTAATAATTTAATT
Found at i:25154809 original size:3 final size:3
Alignment explanation
Indices: 25154801--25154837 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
25154791 ACAGAAGCGT
25154801 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
25154838 GAATGGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:25156635 original size:110 final size:110
Alignment explanation
Indices: 25156144--25156802 Score: 1052
Period size: 110 Copynumber: 6.0 Consensus size: 110
25156134 GCAATTCAAG
* * * * *
25156144 AGGATATTTGGCTATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * * *
25156209 GAATTT-TCAAACGCAAAATATTGTCTTATTT-TAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
25156252 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
25156317 GAATTTCCCAAATGCAAAACATTGCGTTATTTCGAAAATTTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAA-TTTTTAAA
**
25156364 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTCCTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
25156429 GAATTTCCCAAACGCAAAATATTGCCTTATTTTAAAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTA-TTT-GAAAATTTTTAAA
* *
25156476 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
25156541 GAATTTCCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
* * *
25156586 AGGATATTTAGTCATTTGGTTGAATGAGAAAAATCGACACTCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
25156651 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
* *
25156696 AGGATATTTAGCCATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGACACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
25156761 GAATTTCCCAAACGTAAAACATTGCCTTATTTGAAAATTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
25156803 GTTTTTGATA
Statistics
Matches: 514, Mismatches: 32, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
108 66 0.13
109 20 0.04
110 219 0.43
111 6 0.01
112 196 0.38
113 7 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (110 bp):
AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
Found at i:25157011 original size:108 final size:110
Alignment explanation
Indices: 25156851--25157065 Score: 335
Period size: 108 Copynumber: 2.0 Consensus size: 110
25156841 GCAATTCAAG
* * *
25156851 AGGATATTTGGCTATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * * *
25156916 GAATTT-TCAAACGCAAAATATTGTCTTATTT-TAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
* *
25156959 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
25157024 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
25157066 GTTTTTGATA
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 66 0.69
109 22 0.23
110 8 0.08
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (110 bp):
AGGATATTTAGCCATTCGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
Found at i:25157055 original size:263 final size:265
Alignment explanation
Indices: 25156586--25157092 Score: 885
Period size: 263 Copynumber: 1.9 Consensus size: 265
25156576 AATTTTTAAA
* * *
25156586 AGGATATTTAGTCATTTGGTTGAATGAGAAAAATCGACACTCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGTCATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
25156651 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGT
* *
25156716 TGAATGAGAAAAATCGACACCCAGCACCTTAGGACACGTTTTCTCGAATTTCCCAAACGTAAAAC
131 TGAACGAGAAAAATCGACACCCAGCACCTTAGGACACGTTTTCTCGAATTTCCCAAACGCAAAAC
25156781 ATTGCCTTATTTGAAAATTTTTGTTTTTGATAAATCCGAGTAAAATGTATAATATGGATTGCAAT
196 ATTGCCTTATTTGAAAATTTTTGTTTTTGATAAATCCGAGTAAAATGTATAATATGGATTGCAAT
25156846 TCAAG
261 TCAAG
*
25156851 AGGATATTT-GGCTATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
1 AGGATATTTAGTC-ATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
* * * *
25156915 CGAATTT-TCAAACGCAAAATATTGTCTTATTT-TAAATTTTTAAAAGGATATTTAGCCATTTGG
65 CGAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGG
*
25156978 TTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGCAAAA
130 TTGAACGAGAAAAATCGACACCCAGCACCTTAGGACACGTTTTCTCGAATTTCCCAAACGCAAAA
25157043 CATTGCCTTATTTGAAAATTTTTGTTTTTGATAAATCCGAGTAAAATGTA
195 CATTGCCTTATTTGAAAATTTTTGTTTTTGATAAATCCGAGTAAAATGTA
25157093 AGATAATGAT
Statistics
Matches: 230, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
263 142 0.62
264 24 0.10
265 64 0.28
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (265 bp):
AGGATATTTAGTCATTCGGTTAAATGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGT
TGAACGAGAAAAATCGACACCCAGCACCTTAGGACACGTTTTCTCGAATTTCCCAAACGCAAAAC
ATTGCCTTATTTGAAAATTTTTGTTTTTGATAAATCCGAGTAAAATGTATAATATGGATTGCAAT
TCAAG
Found at i:25157204 original size:18 final size:17
Alignment explanation
Indices: 25157173--25157208 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
25157163 ATATATAATG
*
25157173 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
25157190 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
25157208 A
1 A
25157209 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:25157762 original size:21 final size:20
Alignment explanation
Indices: 25157719--25157762 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
25157709 TAAATAACAA
* *
25157719 ATATAAAAAAATATATGTGT
1 ATATAAAAAAATATATATAT
*
25157739 ATATATAAAAAATGTATATAT
1 ATATA-AAAAAATATATATAT
25157760 ATA
1 ATA
25157763 AGGGCAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (20 bp):
ATATAAAAAAATATATATAT
Found at i:25157858 original size:180 final size:181
Alignment explanation
Indices: 25157556--25157894 Score: 662
Period size: 180 Copynumber: 1.9 Consensus size: 181
25157546 TTAAAAGGAT
25157556 TGTATATATAAAAAATGTATATATATAAGGGCAATTATAATAATAATATTATTAAAAGTAATAAT
1 TGTATATATAAAAAATGTATATATATAAGGGCAATTATAATAATAATATTATTAAAAGTAATAAT
25157621 GTTAAAAAACAATTGACTAAATAATAAAAGATGCTAAAAAAGGATTAAATCGAAATAAGAACGAA
66 GTTAAAAAACAATTGACTAAATAATAAAAGATGCTAAAAAAGGATTAAATCGAAATAAGAACGAA
*
25157686 GATACAGGGCCAATTCGAAATAAT-AAATAACAAATATAAAAAAATATATG
131 GATACAGGGCCAATTCAAAATAATCAAATAACAAATATAAAAAAATATATG
25157736 TGTATATATAAAAAATGTATATATATAAGGGCAATTATAATAATAATATTATTAAAAGTAATAAT
1 TGTATATATAAAAAATGTATATATATAAGGGCAATTATAATAATAATATTATTAAAAGTAATAAT
25157801 GTTAAAAAACAATTGACTAAATAATAAAAGATGCTAAAAAAGGATTAAATCGAAATAAGAACGAA
66 GTTAAAAAACAATTGACTAAATAATAAAAGATGCTAAAAAAGGATTAAATCGAAATAAGAACGAA
25157866 GATACAGGGCCAATTCAAAATAATCAAAT
131 GATACAGGGCCAATTCAAAATAATCAAAT
25157895 TGCGACACGC
Statistics
Matches: 157, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
180 153 0.97
181 4 0.03
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (181 bp):
TGTATATATAAAAAATGTATATATATAAGGGCAATTATAATAATAATATTATTAAAAGTAATAAT
GTTAAAAAACAATTGACTAAATAATAAAAGATGCTAAAAAAGGATTAAATCGAAATAAGAACGAA
GATACAGGGCCAATTCAAAATAATCAAATAACAAATATAAAAAAATATATG
Found at i:25159192 original size:91 final size:91
Alignment explanation
Indices: 25159012--25159188 Score: 315
Period size: 88 Copynumber: 2.0 Consensus size: 91
25159002 GGCATTAGGT
25159012 GATATATATGGTTTTCTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTAT
1 GATATATATGGTTTTCTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTAT
25159077 TATGTTATAATAAACATTAAAAAAGA
66 TATGTTATAATAAACATTAAAAAAGA
* *
25159103 GATATATATGGTTTTTTTATATTATT-A-AT-ATATATATGTTATATTAAGGTATAATATATTAT
1 GATATATATGGTTTTCTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTAT
25159165 TATGTTATAATAAACATTAAAAAA
66 TATGTTATAATAAACATTAAAAAA
25159189 AAAGCCATTA
Statistics
Matches: 84, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
88 56 0.67
89 2 0.02
90 1 0.01
91 25 0.30
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (91 bp):
GATATATATGGTTTTCTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTAT
TATGTTATAATAAACATTAAAAAAGA
Found at i:25159206 original size:88 final size:91
Alignment explanation
Indices: 25159023--25159208 Score: 272
Period size: 88 Copynumber: 2.1 Consensus size: 91
25159013 ATATATATGG
*
25159023 TTTTCTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTATTATGTTATAAT
1 TTTTTTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTATTATGTTATAAT
* * **
25159088 AAACATTAAAAAAGAGATATATATGG
66 AAACATTAAAAAAAAGACATATATCA
*
25159114 TTTTTTTATATTATT-A-AT-ATATATATGTTATATTAAGGTATAATATATTATTATGTTATAAT
1 TTTTTTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTATTATGTTATAAT
*
25159176 AAACATTAAAAAAAAAGCCAT-TATCA
66 AAACATT-AAAAAAAAGACATATATCA
25159202 TTTTTTT
1 TTTTTTT
25159209 CCCTTCATCT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
88 60 0.69
89 12 0.14
90 1 0.01
91 14 0.16
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (91 bp):
TTTTTTTATATTATTAATATAATATATATGTTATAATAAGGTATAATATATTATTATGTTATAAT
AAACATTAAAAAAAAGACATATATCA
Found at i:25159891 original size:2 final size:2
Alignment explanation
Indices: 25159884--25159913 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25159874 TTATTAATTA
25159884 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25159914 CTATTGTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25160869 original size:41 final size:41
Alignment explanation
Indices: 25160824--25160956 Score: 212
Period size: 41 Copynumber: 3.2 Consensus size: 41
25160814 GGCTCGGTGC
* * * **
25160824 CTAGCAGGCTTGATGCCAGTGATATGTTTCAGACTTTAAGT
1 CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTAAGT
25160865 CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTAAGT
1 CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTAAGT
*
25160906 CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTATGT
1 CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTAAGT
25160947 CTAGCAGGCT
1 CTAGCAGGCT
25160957 AAGTGCCAGT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (41 bp):
CTAGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTAAGT
Done.