Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 9 of 141
Found at i:2419544 original size:249 final size:247
Alignment explanation
Indices: 2419108--2419582 Score: 851
Period size: 249 Copynumber: 1.9 Consensus size: 247
2419098 TCAGAACAAG
2419108 GAACAAATGAGATGGATATATATAACTCTCCACAACAACAACCTCCCCAAATCCCAATATTCTCT
1 GAACAAATGAGATGGATATATATAACTCTCCACAACAACAACCTCCCCAAATCCCAATATTCTCT
* * *
2419173 CCTCAAATCTCTGCCCTTATCACTCCATCGATTTCCTCTTAACTCCCTCTATGACCAGTTCAAAC
66 CCTCAAATCTCTCCCCTTATCACTCCATCGATTTCCCCTTAACTCCCTCCATGACCAGTTCAAAC
* *
2419238 TTCTTTCGGCAATATTTCACTCCAACTCTGCCACTTAGACGACTCAAGCAGCAAAATAAATACCC
131 TTCCTTCGGCAATATTTCACTCCAACTCTGCCACTTACACGACTCAAGCAGCAAAATAAATACCC
*
2419303 CATTGTGCAACCAAGGACTTGAACCTCAGACATCAACATCTCCCCTCATTCA
196 CATTGCGCAACCAAGGACTTGAACCTCAGACATCAACATCTCCCCTCATTCA
*
2419355 GAACAAATGAGATGGATATATATAACTCTCCACAACAACAACCTCCCCAAATCTCAATATTCTCT
1 GAACAAATGAGATGGATATATATAACTCTCCACAACAACAACCTCCCCAAATCCCAATATTCTCT
2419420 CCTCAAATCTCTCCCCCCTTATCACTCCATCGATTTCCCCTTAACTCCCTCCATGACCAGTTCAA
66 CCTCAAATCTCT--CCCCTTATCACTCCATCGATTTCCCCTTAACTCCCTCCATGACCAGTTCAA
* *
2419485 ACTTCCTTCGGCAGTATTTCACTCCAACTCTGCCACTTACACGGCTCAAGCAGCAAAATAAATAC
129 ACTTCCTTCGGCAATATTTCACTCCAACTCTGCCACTTACACGACTCAAGCAGCAAAATAAATAC
2419550 CCCATTGCGCAACCAAGGACTTGAACCTCAGAC
194 CCCATTGCGCAACCAAGGACTTGAACCTCAGAC
2419583 CTCACAGTTT
Statistics
Matches: 217, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
247 76 0.35
249 141 0.65
ACGTcount: A:0.31, C:0.34, G:0.09, T:0.25
Consensus pattern (247 bp):
GAACAAATGAGATGGATATATATAACTCTCCACAACAACAACCTCCCCAAATCCCAATATTCTCT
CCTCAAATCTCTCCCCTTATCACTCCATCGATTTCCCCTTAACTCCCTCCATGACCAGTTCAAAC
TTCCTTCGGCAATATTTCACTCCAACTCTGCCACTTACACGACTCAAGCAGCAAAATAAATACCC
CATTGCGCAACCAAGGACTTGAACCTCAGACATCAACATCTCCCCTCATTCA
Found at i:2421338 original size:33 final size:33
Alignment explanation
Indices: 2421301--2421409 Score: 130
Period size: 33 Copynumber: 3.3 Consensus size: 33
2421291 ATAACCCAGT
2421301 TATGGTCTTATCATCAGAATGTCATAGCCCAAC
1 TATGGTCTTATCATCAGAATGTCATAGCCCAAC
* * * *
2421334 TATGGTCTTA-CATCCATAGTGTCATAACCCAAT
1 TATGGTCTTATCAT-CAGAATGTCATAGCCCAAC
* * *
2421367 TATGGTTTTATCACCAGAATGCCATAGCCCAAC
1 TATGGTCTTATCATCAGAATGTCATAGCCCAAC
*
2421400 TACGGTCTTA
1 TATGGTCTTA
2421410 CATATAAATA
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
32 3 0.05
33 56 0.92
34 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (33 bp):
TATGGTCTTATCATCAGAATGTCATAGCCCAAC
Found at i:2423624 original size:14 final size:13
Alignment explanation
Indices: 2423597--2423631 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
2423587 TTTACATATT
2423597 TTTATATTTTAAAA
1 TTTA-ATTTTAAAA
2423611 TTTAATTTTAAAA
1 TTTAATTTTAAAA
*
2423624 ATTAATTT
1 TTTAATTT
2423632 AATCTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTAATTTTAAAA
Found at i:2424176 original size:61 final size:62
Alignment explanation
Indices: 2424104--2424222 Score: 213
Period size: 61 Copynumber: 1.9 Consensus size: 62
2424094 GGTGACAGTT
*
2424104 ATTAATGTACCAACATCCCAAAAATAATTTCTTTTTG-AAAAAAAATAAATGAATGCCGGCA
1 ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAATAAATGAATGCCGGCA
*
2424165 ATTATTGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAATAAATGAATGCC
1 ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAATAAATGAATGCC
2424223 AACCATCTAG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 35 0.64
62 20 0.36
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (62 bp):
ATTAATGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAATAAATGAATGCCGGCA
Found at i:2424251 original size:62 final size:61
Alignment explanation
Indices: 2424104--2424244 Score: 178
Period size: 61 Copynumber: 2.3 Consensus size: 61
2424094 GGTGACAGTT
* * * **
2424104 ATTAATGTACCAACATCCCAAAAATAATTTCTTTTTGAAAAAAAATAAATGAATGCCGGCA
1 ATTAGTGTACCAACAACCCAAAAATAATTTCGTTTTGAAAAAAAATAAATGAATGCCAACA
* * *
2424165 ATTATTGTACCAACATCCCAAAAATAATTTCGTTTTGAAAAAAAAATAAATGAATGCCAACC
1 ATTAGTGTACCAACAACCCAAAAATAATTTCGTTTTG-AAAAAAAATAAATGAATGCCAACA
2424227 ATCTAGTGT-CCAA-AACCC
1 AT-TAGTGTACCAACAACCC
2424245 TCAAAATTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
61 39 0.55
62 27 0.38
63 5 0.07
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (61 bp):
ATTAGTGTACCAACAACCCAAAAATAATTTCGTTTTGAAAAAAAATAAATGAATGCCAACA
Found at i:2425198 original size:13 final size:14
Alignment explanation
Indices: 2425182--2425228 Score: 60
Period size: 13 Copynumber: 3.2 Consensus size: 14
2425172 ATATAAATGC
2425182 AAAAAATAA-AATA
1 AAAAAATAATAATA
2425195 AAAAAATAATAATA
1 AAAAAATAATAATA
2425209 ACTAAAAATATATAATA
1 A--AAAAATA-ATAATA
2425226 AAA
1 AAA
2425229 CAAAGGATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.30
14 5 0.17
15 2 0.07
16 7 0.23
17 7 0.23
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAATAATAATA
Found at i:2433176 original size:12 final size:12
Alignment explanation
Indices: 2433159--2433183 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2433149 GGTATAATAA
2433159 TTTTATAATATT
1 TTTTATAATATT
2433171 TTTTATAATATT
1 TTTTATAATATT
2433183 T
1 T
2433184 AATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATAATATT
Found at i:2433365 original size:28 final size:28
Alignment explanation
Indices: 2433312--2433365 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
2433302 TTTATCATGA
* *
2433312 TTTAAATATTAATATTAATATATTATAC
1 TTTAAATAATAATATTAAAATATTATAC
*
2433340 TTTAAATAATATTATTAACAAT-TTAT
1 TTTAAATAATAATATTAA-AATATTAT
2433366 TACAAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 20 0.91
29 2 0.09
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (28 bp):
TTTAAATAATAATATTAAAATATTATAC
Found at i:2433438 original size:17 final size:17
Alignment explanation
Indices: 2433418--2433469 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
2433408 TTAATGTCAA
2433418 TTTTATTAATATTTATT
1 TTTTATTAATATTTATT
2433435 TTTTA-TAAT-TTTATAT
1 TTTTATTAATATTTAT-T
*
2433451 TTGTTATGAATATCTTATT
1 TT-TTATTAATAT-TTATT
2433470 AAGTAGATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 5 0.17
16 7 0.24
17 8 0.28
18 3 0.10
19 2 0.07
20 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTTATTAATATTTATT
Found at i:2434147 original size:14 final size:15
Alignment explanation
Indices: 2434120--2434148 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2434110 GTTTTGGAGG
2434120 TTTGGGGAGTAAAAT
1 TTTGGGGAGTAAAAT
2434135 TTTGGGG-GTAAAAT
1 TTTGGGGAGTAAAAT
2434149 ATTCAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (15 bp):
TTTGGGGAGTAAAAT
Found at i:2438379 original size:16 final size:15
Alignment explanation
Indices: 2438311--2438393 Score: 71
Period size: 15 Copynumber: 5.5 Consensus size: 15
2438301 ACTATAGAAT
*
2438311 ACTATAGATTATGAA
1 ACTATAGATTTTGAA
*
2438326 ACTCTAGATTTTGAAAA
1 ACTATAGATTTTG--AA
2438343 ACTAT--ATTTTGAA
1 ACTATAGATTTTGAA
* *
2438356 ACTTTAGATTCTGAAA
1 ACTATAGATTTTG-AA
* *
2438372 ACTATAGATATTGAT
1 ACTATAGATTTTGAA
2438387 ACTATAG
1 ACTATAG
2438394 TGACGAAACT
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
13 6 0.11
15 30 0.56
16 12 0.22
17 6 0.11
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (15 bp):
ACTATAGATTTTGAA
Found at i:2439037 original size:9 final size:9
Alignment explanation
Indices: 2439023--2439090 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
2439013 TTTGGTTAAA
*
2439023 AATTACCCG
1 AATTAACCG
*
2439032 AATTACCCG
1 AATTAACCG
* *
2439041 AATTACCCA
1 AATTAACCG
2439050 AATTAACCG
1 AATTAACCG
2439059 AATTAACCG
1 AATTAACCG
2439068 AATTAACCG
1 AATTAACCG
2439077 AATTAACCG
1 AATTAACCG
2439086 AATTA
1 AATTA
2439091 CTGAAAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.43, C:0.25, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:2439276 original size:13 final size:13
Alignment explanation
Indices: 2439258--2439287 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2439248 TTTTAGTTTT
2439258 ATTGGGTTGAGTA
1 ATTGGGTTGAGTA
*
2439271 ATTGGGTTGGGTA
1 ATTGGGTTGAGTA
2439284 ATTG
1 ATTG
2439288 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGAGTA
Found at i:2445288 original size:16 final size:18
Alignment explanation
Indices: 2445267--2445299 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
2445257 AACTTGGACA
2445267 TTGGAT-ATTTT-TAATT
1 TTGGATGATTTTATAATT
2445283 TTGGATGATTTTATAAT
1 TTGGATGATTTTATAAT
2445300 ATCATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (18 bp):
TTGGATGATTTTATAATT
Found at i:2447477 original size:41 final size:40
Alignment explanation
Indices: 2447421--2447584 Score: 222
Period size: 41 Copynumber: 3.9 Consensus size: 40
2447411 GCATTTACAG
2447421 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
*
2447461 AAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCG-TTT
*
2447503 ACAAAAAACGCCGCTAAAGAACATAG-TCTTTTAGCGGCGCTTGGT
1 A-AAAAAACGCCGCTAAAGATCAT-GTTC-TTTAGCGGCG-TT--T
*
2447548 AAAAAAACGCCGCTATAGATCATGTTCTTTAGCGGCG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
2447585 CTTTTCATCA
Statistics
Matches: 111, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
40 6 0.05
41 31 0.28
42 21 0.19
43 30 0.27
44 22 0.20
45 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (40 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
Found at i:2447572 original size:86 final size:83
Alignment explanation
Indices: 2447422--2447587 Score: 255
Period size: 86 Copynumber: 2.0 Consensus size: 83
2447412 CATTTACAGA
*
2447422 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTAAAAAAGACGCCGCTAAAGATCATGT
1 AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAAAGACGCCGCTAAAGATCATGT
2447487 TCTTTAGCGGCGCTTAAC
66 TCTTTAGCGGCGCTTAAC
*
2447505 AAAAAACGCCGCTAAAGAACATAG-TCTTTTAGCGGCGCTTGGTAAAAAA-ACGCCGCTATAGAT
1 AAAAAACGCCGCTAAAGAACAT-GTTC-TTTAGCGGCG-TT--TAAAAAAGACGCCGCTAAAGAT
2447568 CATGTTCTTTAGCGGCGCTT
61 CATGTTCTTTAGCGGCGCTT
2447588 TTCATCACGA
Statistics
Matches: 76, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
83 23 0.30
84 11 0.14
85 2 0.03
86 33 0.43
87 7 0.09
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (83 bp):
AAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAAAGACGCCGCTAAAGATCATGT
TCTTTAGCGGCGCTTAAC
Found at i:2447601 original size:44 final size:43
Alignment explanation
Indices: 2447421--2447649 Score: 231
Period size: 44 Copynumber: 5.4 Consensus size: 43
2447411 GCATTTACAG
2447421 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG--TTT-
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTC
**
2447461 AAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAC
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTC
* *
2447505 -AAAAAACGCCGCTAAAGAACATAG-TCTTTTAGCGGCGCTTGGT-
1 AAAAAAACGCCGCTAAAGATCAT-GTTC-TTTAGCGGCGCTT-TTC
*
2447548 AAAAAAACGCCGCTATAGATCATGTTCTTTAGCGGCGCTTTTC
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTC
* ** * * *
2447591 ATCACGAACGCTGC-AAAAAGTAATGTTCTTTAGCGGCGCTTTT-
1 A-AAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTTTC
* *
2447634 ATAAAAACGCCACTAA
1 AAAAAAACGCCGCTAA
2447650 TTTTGGGATT
Statistics
Matches: 156, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
40 6 0.04
41 31 0.20
42 26 0.17
43 41 0.26
44 52 0.33
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTC
Found at i:2447640 original size:86 final size:84
Alignment explanation
Indices: 2447422--2447649 Score: 248
Period size: 86 Copynumber: 2.7 Consensus size: 84
2447412 CATTTACAGA
* *
2447422 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG--TTTAAAAAAGACGCCGCTAAAGATCAT
1 AAAAAACGCCGCAAAAGAACATGTTCTTTAGCGGCGCTTTTAAAAAA-ACGCCGCTAAAGATCAT
2447485 GTTCTTTAGCGGCGCTTAAC
65 GTTCTTTAGCGGCGCTTAAC
* * *
2447505 AAAAAACGCCGCTAAAGAACATAG-TCTTTTAGCGGCGCTTGGTAAAAAAACGCCGCTATAGATC
1 AAAAAACGCCGCAAAAGAACAT-GTTC-TTTAGCGGCGCTT-TTAAAAAAACGCCGCTAAAGATC
**
2447569 ATGTTCTTTAGCGGCGCTTTTC
63 ATGTTCTTTAGCGGCGCTTAAC
** * * * *
2447591 ATCACGAACGCTGCAAAAAGTA-ATGTTCTTTAGCGGCGCTTTTATAAAAACGCCACTAA
1 A--AAAAACGCCGC-AAAAGAACATGTTCTTTAGCGGCGCTTTTAAAAAAACGCCGCTAA
2447650 TTTTGGGATT
Statistics
Matches: 122, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
83 23 0.19
84 11 0.09
86 50 0.41
87 21 0.17
88 12 0.10
89 5 0.04
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (84 bp):
AAAAAACGCCGCAAAAGAACATGTTCTTTAGCGGCGCTTTTAAAAAAACGCCGCTAAAGATCATG
TTCTTTAGCGGCGCTTAAC
Found at i:2448038 original size:12 final size:12
Alignment explanation
Indices: 2448021--2448069 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
2448011 TTTTGAACCT
2448021 CTGCTTCTCTCG
1 CTGCTTCTCTCG
*
2448033 CTGCTTCTCGCG
1 CTGCTTCTCTCG
**
2448045 CTGCAGC-CT--
1 CTGCTTCTCTCG
2448054 CTGCTTCTCTCG
1 CTGCTTCTCTCG
2448066 CTGC
1 CTGC
2448070 AGCCTTTGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
9 5 0.18
10 2 0.07
11 1 0.04
12 20 0.71
ACGTcount: A:0.02, C:0.43, G:0.20, T:0.35
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:2448057 original size:21 final size:21
Alignment explanation
Indices: 2448033--2448101 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
2448023 GCTTCTCTCG
*
2448033 CTGCTTCTCGCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
2448054 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* * * *
2448075 TTGCTTCCCTCGTTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
2448096 CTGCTT
1 CTGCTT
2448102 TAAGTTGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.03, C:0.42, G:0.20, T:0.35
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:2452965 original size:9 final size:9
Alignment explanation
Indices: 2452946--2453363 Score: 248
Period size: 9 Copynumber: 48.7 Consensus size: 9
2452936 TATTCGTGTA
*
2452946 TAAGCTATG
1 TAAGTTATG
*
2452955 TAAGTTGTG
1 TAAGTTATG
2452964 T-A-TTATG
1 TAAGTTATG
2452971 TAAGTTATG
1 TAAGTTATG
*
2452980 TAAGTTATC
1 TAAGTTATG
* *
2452989 AAAGTAATG
1 TAAGTTATG
*
2452998 TATGTTATG
1 TAAGTTATG
2453007 TAAG-T-TG
1 TAAGTTATG
2453014 TAAGTTAT-
1 TAAGTTATG
*
2453022 TATGTATTATG
1 TAAG--TTATG
2453033 TAAGTTAAATG
1 TAAGTT--ATG
2453044 T-A-TTATG
1 TAAGTTATG
*
2453051 TAGGTTATG
1 TAAGTTATG
2453060 TAAG-T-T-
1 TAAGTTATG
2453066 T-A-TTATG
1 TAAGTTATG
*
2453073 TAGGTTATG
1 TAAGTTATG
*
2453082 TAAGTTGTG
1 TAAGTTATG
* *
2453091 TAAGATATT
1 TAAGTTATG
2453100 TAAGTTATG
1 TAAGTTATG
*
2453109 TAAGTTTTG
1 TAAGTTATG
2453118 T-A-TTATG
1 TAAGTTATG
2453125 TAAGTTATG
1 TAAGTTATG
*
2453134 TACGTGTA--
1 TAAGT-TATG
2453142 TAAGTTATG
1 TAAGTTATG
2453151 TAAGTTATG
1 TAAGTTATG
*
2453160 T-A-TTAAG
1 TAAGTTATG
* *
2453167 TAAGCTATA
1 TAAGTTATG
* *
2453176 T-ATTTGTG
1 TAAGTTATG
2453184 T-A-TTATG
1 TAAGTTATG
2453191 TAAGTTATG
1 TAAGTTATG
*
2453200 TAAGTTATC
1 TAAGTTATG
* *
2453209 AAAGTAATG
1 TAAGTTATG
*
2453218 TATGTTATG
1 TAAGTTATG
2453227 TAAG-T-TG
1 TAAGTTATG
2453234 TAAGTTAT-
1 TAAGTTATG
*
2453242 TATGTATTATG
1 TAAG--TTATG
2453253 TAAGTTAAATG
1 TAAGTT--ATG
2453264 T-A-TTATG
1 TAAGTTATG
*
2453271 TAGGTTATG
1 TAAGTTATG
*
2453280 TAAGTTGTG
1 TAAGTTATG
* *
2453289 TAAGATATT
1 TAAGTTATG
2453298 TAAGTTATG
1 TAAGTTATG
*
2453307 TAAGTTTTTG
1 TAAG-TTATG
2453317 T-A-TTATG
1 TAAGTTATG
2453324 TAAGTTATG
1 TAAGTTATG
*
2453333 TCAGTTATG
1 TAAGTTATG
* *
2453342 TATGCTATG
1 TAAGTTATG
2453351 T-A-TTATG
1 TAAGTTATG
2453358 TAAGTT
1 TAAGTT
2453364 GTTATGTTAT
Statistics
Matches: 308, Mismatches: 62, Indels: 78
0.69 0.14 0.17
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 54 0.18
8 29 0.09
9 190 0.62
10 17 0.06
11 14 0.05
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:2453050 original size:71 final size:73
Alignment explanation
Indices: 2452975--2453330 Score: 283
Period size: 71 Copynumber: 4.9 Consensus size: 73
2452965 ATTATGTAAG
** *
2452975 TTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG-T-TGTAAGTTATTATGTATTATGTAAGT
1 TTATGTAAGTTATGTAAGTAATGTAAGTTATGTAAGTTATGTAAGTTATTATGTATTATGTAAGT
2453038 TAAATGTA
66 TAAATGTA
* * * * *
2453046 TTATGTAGGTTATGTAAGTTTATTATGTAGGTTATGTAAGTTGTGTAAGATATT-T-AAGTTATG
1 TTATGTAAGTTATGTAAG--TA--ATGTAAGTTATGTAAGTTATGTAAGTTATTATGTA-TTATG
*
2453109 TAAGTT--TTGTA
61 TAAGTTAAATGTA
* * * * *
2453120 TTATGTAAGTTATGTACGT-GTATAAGTTATGTAAGTTATGT-A-TTAAGTAAGCTATATAT-T-
1 TTATGTAAGTTATGTAAGTAATGTAAGTTATGTAAGTTATGTAAGTT-ATTATG-TAT-TATGTA
* *
2453180 TGTGTATTATGTAA
63 AGT-TA-AATGT-A
** *
2453194 GTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG-T-TGTAAGTTATTATGTATTATGTAAG
1 -TTATGTAAGTTATGTAAGTAATGTAAGTTATGTAAGTTATGTAAGTTATTATGTATTATGTAAG
2453257 TTAAATGTA
65 TTAAATGTA
* ** * *
2453266 TTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTT-TT-TGTATTATGTAAGT
1 TTATGTAAGTTATGTAAGTAATGTAAGTTATGTAAGTTATGTAAGTTATTATGTATTATGTAAGT
2453329 TA
66 TA
2453331 TGTCAGTTAT
Statistics
Matches: 223, Mismatches: 37, Indels: 50
0.72 0.12 0.16
Matches are distributed among these distances:
67 1 0.00
68 3 0.01
69 20 0.09
70 3 0.01
71 63 0.28
72 5 0.02
73 20 0.09
74 30 0.13
75 40 0.18
76 28 0.13
77 10 0.04
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (73 bp):
TTATGTAAGTTATGTAAGTAATGTAAGTTATGTAAGTTATGTAAGTTATTATGTATTATGTAAGT
TAAATGTA
Found at i:2453072 original size:22 final size:22
Alignment explanation
Indices: 2453044--2453087 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2453034 AAGTTAAATG
2453044 TATTATGTAGGTTATGTAAGTT
1 TATTATGTAGGTTATGTAAGTT
2453066 TATTATGTAGGTTATGTAAGTT
1 TATTATGTAGGTTATGTAAGTT
2453088 GTGTAAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TATTATGTAGGTTATGTAAGTT
Found at i:2453152 original size:42 final size:43
Alignment explanation
Indices: 2453068--2453170 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
2453058 TGTAAGTTTA
* *
2453068 TTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAG
1 TTATGTA--TTATGTAAGTTATGTAAGATATATAAGTTATGTAAG
* * *
2453113 TTTTGTATTATGTAAGTTATGTACG-TGTATAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAGATATATAAGTTATGTAAG
*
2453155 TTATGTATTAAGTAAG
1 TTATGTATTATGTAAG
2453171 CTATATATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 29 0.57
43 16 0.31
45 6 0.12
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (43 bp):
TTATGTATTATGTAAGTTATGTAAGATATATAAGTTATGTAAG
Found at i:2453319 original size:53 final size:53
Alignment explanation
Indices: 2453120--2453393 Score: 153
Period size: 53 Copynumber: 5.2 Consensus size: 53
2453110 AAGTTTTGTA
* * * *
2453120 TTATGTAAGTTATGTACG-TGTATAAGTTATGTAAGTTA--TGTATTAAGTAAG
1 TTATGTAAGTT-TGTAAGATATTTAAGTTATGTAAGTTATTTGTATTATGTAAG
* * * ** *
2453171 CTATAT-A-TTTGT--GTATTATGTAAGTTATGTAAGTTATCAAAGTA--ATGTATG
1 TTATGTAAGTTTGTAAG-A-TATTTAAGTTATGTAAGTTAT--TTGTATTATGTAAG
* * ** *
2453222 TTATGTAAG-TTGTAAGTTA-TTATGTATTATGTAAGTTAAATGTATTATGTAGG
1 TTATGTAAGTTTGTAAGATATTTAAG--TTATGTAAGTTATTTGTATTATGTAAG
2453275 TTATGTAAGTTGTGTAAGATATTTAAGTTATGTAAGTT-TTTGTATTATGTAAG
1 TTATGTAAGTT-TGTAAGATATTTAAGTTATGTAAGTTATTTGTATTATGTAAG
* * * * * *
2453328 TTATGTCAGTTATGTATGCTATGT-A-TTATGTAAGTTGTTATGTTATTACGTAAG
1 TTATGTAAGTT-TGTAAGATATTTAAGTTATGTAAGTTATT-TG-TATTATGTAAG
*
2453382 TTATGCAAGTTT
1 TTATGTAAGTTT
2453394 ATATATAAGC
Statistics
Matches: 174, Mismatches: 28, Indels: 40
0.72 0.12 0.17
Matches are distributed among these distances:
46 1 0.01
48 3 0.02
49 20 0.11
50 1 0.01
51 31 0.18
52 10 0.06
53 64 0.37
54 32 0.18
55 8 0.05
56 4 0.02
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.47
Consensus pattern (53 bp):
TTATGTAAGTTTGTAAGATATTTAAGTTATGTAAGTTATTTGTATTATGTAAG
Found at i:2453421 original size:220 final size:218
Alignment explanation
Indices: 2453022--2453426 Score: 443
Period size: 220 Copynumber: 1.8 Consensus size: 218
2453012 TGTAAGTTAT
* *
2453022 TATGTATTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTTATTATGTAGGTTATGTAAGT
1 TATGTATTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTTAATATGTAAGTTATGTAAGT
* * *
2453087 TGTGTAAGATATTTAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTACGTGTATAAGTTATGT
66 TGTGTAAGATATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTGTATAAGTTATGT
* * ** * *
2453152 AAGTTATGTATTAAGTAAGCTATATATTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAAT
131 AAGTTAAG-ATTAAGCAAGCTATATATAAGTGTATGA-GTAACTTATGTAAGTTATCAAAGTAAT
2453217 GTATGTTATGTAAGTTGTAAGTTAT
194 GTATGTTATGTAAGTTGTAAGTTAT
*
2453242 TATGTATTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATG
1 TATGTATTATGTAAGTTAAATGTATTATGTAGGTTATGTAAG-T-T-T-A-ATATGTAAGTTATG
* * *
2453307 TAAGTTTTTGT-A-TTATGTAAGTTATGTCAGTTATGTATGCTATGT-A-TTATGTAAGTTGT-T
61 TAAG-TTGTGTAAGATATGTAAGTTATGTAAGTTATGTAT--TATGTAAGTTATGTAAG-TGTAT
* * * *
2453367 ATGTTAT-TACG-TAAG-TTATGCAAGTTTATATATAAGCTTGTA-GA-TAACTTATGTAAGTTA
122 AAGTTATGTAAGTTAAGATTAAGCAAG-CTATATATAAG--TGTATGAGTAACTTATGTAAGTTA
2453427 ATATGTAAGT
Statistics
Matches: 154, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
220 64 0.42
221 9 0.06
222 5 0.03
223 8 0.05
224 38 0.25
225 20 0.13
226 10 0.06
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.46
Consensus pattern (218 bp):
TATGTATTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTTAATATGTAAGTTATGTAAGT
TGTGTAAGATATGTAAGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTGTATAAGTTATGT
AAGTTAAGATTAAGCAAGCTATATATAAGTGTATGAGTAACTTATGTAAGTTATCAAAGTAATGT
ATGTTATGTAAGTTGTAAGTTAT
Found at i:2453483 original size:9 final size:9
Alignment explanation
Indices: 2453471--2453500 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
2453461 AAATTTTATA
*
2453471 TAAGTTATG
1 TAAGTAATG
2453480 TAAGTAATG
1 TAAGTAATG
2453489 TAAGTAATG
1 TAAGTAATG
2453498 TAA
1 TAA
2453501 TAAATTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (9 bp):
TAAGTAATG
Found at i:2453557 original size:33 final size:31
Alignment explanation
Indices: 2453481--2453564 Score: 107
Period size: 33 Copynumber: 2.6 Consensus size: 31
2453471 TAAGTTATGT
* *
2453481 AAGTAATGTAAGTAATGTAATAAATTTAACC
1 AAGTTATGTAAGTAATGTAAAAAATTTAACC
*
2453512 AAATTATGTAAGTAATGTATAAAAATTTTATA-C
1 AAGTTATGTAAGTAATGTA-AAAAA-TTTA-ACC
2453545 AAGTTATGTAAGTAATGTAA
1 AAGTTATGTAAGTAATGTAA
2453565 TATATACTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
31 17 0.37
32 5 0.11
33 23 0.50
34 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.36
Consensus pattern (31 bp):
AAGTTATGTAAGTAATGTAAAAAATTTAACC
Found at i:2453601 original size:13 final size:13
Alignment explanation
Indices: 2453583--2453748 Score: 129
Period size: 13 Copynumber: 12.5 Consensus size: 13
2453573 TAAATTTTAG
*
2453583 TAAGTAATGTATT
1 TAAGTAATATATT
*
2453596 TAAGTAACATATT
1 TAAGTAATATATT
*
2453609 TAAGTAATAAATT
1 TAAGTAATATATT
** *
2453622 TAACCAA-ATTTT
1 TAAGTAATATATT
*
2453634 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
2453649 TAAGTAAACATATT
1 TAAGT-AATATATT
*
2453663 TAAGTAATAAATT
1 TAAGTAATATATT
** *
2453676 TAACCAA-ATTTT
1 TAAGTAATATATT
*
2453688 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
2453703 TAAGTAATTTATT
1 TAAGTAATATATT
2453716 TAAGTAATATATT
1 TAAGTAATATATT
*
2453729 CAAGTAATATATT
1 TAAGTAATATATT
*
2453742 AAAGTAA
1 TAAGTAA
2453749 ATTTTAGTAA
Statistics
Matches: 118, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
12 6 0.05
13 85 0.72
14 21 0.18
15 6 0.05
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:2453637 original size:23 final size:23
Alignment explanation
Indices: 2453606--2453692 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 23
2453596 TAAGTAACAT
*
2453606 ATTTAAGTAATAAATTTAACCAA
1 ATTTTAGTAATAAATTTAACCAA
**
2453629 ATTTTAGTAAGTAATGTATTTAAGTAAA
1 ATTTTAGTAA-TAA---ATTTAA-CCAA
2453657 CATATTTAAGTAATAAATTTAACCAA
1 -AT-TTT-AGTAATAAATTTAACCAA
2453683 ATTTTAGTAA
1 ATTTTAGTAA
2453693 GTAATGTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
23 14 0.27
24 6 0.12
25 2 0.04
26 2 0.04
27 12 0.24
28 2 0.04
29 2 0.04
30 6 0.12
31 5 0.10
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (23 bp):
ATTTTAGTAATAAATTTAACCAA
Found at i:2453683 original size:54 final size:53
Alignment explanation
Indices: 2453574--2453724 Score: 275
Period size: 54 Copynumber: 2.8 Consensus size: 53
2453564 ATATATACTT
2453574 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
2453627 AAATTTTAGTAAGTAATGTATTTAAGTAAACATATTTAAGTAATAAATTTAACC
1 AAATTTTAGTAAGTAATGTATTTAAGT-AACATATTTAAGTAATAAATTTAACC
**
2453681 AAATTTTAGTAAGTAATGTATTTAAGTAATTTATTTAAGTAATA
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATA
2453725 TATTCAAGTA
Statistics
Matches: 95, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 42 0.44
54 53 0.56
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (53 bp):
AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
Found at i:2453703 original size:27 final size:27
Alignment explanation
Indices: 2453574--2453705 Score: 119
Period size: 27 Copynumber: 4.9 Consensus size: 27
2453564 ATATATACTT
**
2453574 AAATTTTAGTAAGTAATGTATTTAAGT
1 AAATTTTAGTAAGTAATGTATTTAACC
* **
2453601 AACATATT--TAAGTAATAAATTTAACC
1 AA-ATTTTAGTAAGTAATGTATTTAACC
**
2453627 AAATTTTAGTAAGTAATGTATTTAAGTA
1 AAATTTTAGTAAGTAATGTATTTAA-CC
* **
2453655 AACATATT--TAAGTAATAAATTTAACC
1 AA-ATTTTAGTAAGTAATGTATTTAACC
2453681 AAATTTTAGTAAGTAATGTATTTAA
1 AAATTTTAGTAAGTAATGTATTTAA
2453706 GTAATTTATT
Statistics
Matches: 80, Mismatches: 18, Indels: 14
0.71 0.16 0.12
Matches are distributed among these distances:
25 8 0.10
26 18 0.22
27 44 0.55
28 6 0.08
29 4 0.05
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (27 bp):
AAATTTTAGTAAGTAATGTATTTAACC
Found at i:2453775 original size:66 final size:67
Alignment explanation
Indices: 2453636--2453775 Score: 165
Period size: 66 Copynumber: 2.1 Consensus size: 67
2453626 CAAATTTTAG
* * ** *
2453636 TAAGTAATGTATTTAAGTAAACATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAATGTA
1 TAAGTAATGTATTTAAGTAAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATA
2453701 TT
66 TT
* * * ** *
2453703 TAAGTAATTTATTTAAGT-AATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATG
1 TAAGTAATGTATTTAAGTAAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATA
2453767 TT
66 TT
*
2453769 TTAGTAA
1 TAAGTAA
2453776 GTAATGTAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
66 44 0.72
67 17 0.28
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (67 bp):
TAAGTAATGTATTTAAGTAAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATA
TT
Found at i:2454033 original size:21 final size:21
Alignment explanation
Indices: 2454008--2454049 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2453998 TCACATTAAT
2454008 AGCTAATTGGGTTTCATCCAC
1 AGCTAATTGGGTTTCATCCAC
2454029 AGCTAATTGGGTTTCATCCAC
1 AGCTAATTGGGTTTCATCCAC
2454050 TGCACTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (21 bp):
AGCTAATTGGGTTTCATCCAC
Found at i:2454387 original size:11 final size:12
Alignment explanation
Indices: 2454364--2454399 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
2454354 GCAAAGTTAA
2454364 ATTAAAAAA-AT
1 ATTAAAAAATAT
2454375 A-TAAAAAATAT
1 ATTAAAAAATAT
2454386 ATTAAAAAAT-T
1 ATTAAAAAATAT
2454397 ATT
1 ATT
2454400 TTGCAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.30
11 8 0.35
12 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATTAAAAAATAT
Found at i:2454669 original size:6 final size:6
Alignment explanation
Indices: 2454658--2454687 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
2454648 ATAAAATTGT
2454658 TCCAAA TCCAAA TCCAAA TCCAAA TCCAAA
1 TCCAAA TCCAAA TCCAAA TCCAAA TCCAAA
2454688 GGAGCAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCAAA
Found at i:2455582 original size:147 final size:146
Alignment explanation
Indices: 2455411--2455789 Score: 365
Period size: 147 Copynumber: 2.6 Consensus size: 146
2455401 ATTTTCGAAT
* * * *
2455411 AAACGCCGCAAATAATATAG-CAAAACGACATCGTATCAATAAATGTTGAAACATTTTTGCGGCG
1 AAACGCCACTAATAACATAGACAAAACGACAACGTATCAATAAATGTT-AAACATTTTTGCGGCG
* * ** *
2455475 TTTTAAGCAAAGCGCCACTAACTATAAG-TCAAAACGCA-GTCGCTTCATTAACA-TTTACGTCA
65 TTTTAAGAAAAGCGCCACTAACTATAAGTTC-AAACG-ATGCCGCTTCAGCAACAGTTAAC-TCA
2455537 AGCCCGTGGCGTTTCC-GAAA
127 AGCCCGTGGCGTTTCCAG-AA
** * * * * * * *
2455557 AAACGCCACTAATAACATTTACAAAACGGCAGCGTTTCTATAAATCTTAGAACAATTTTGTGGCG
1 AAACGCCACTAATAACATAGACAAAACGACAACGTATCAATAAATGTTA-AACATTTTTGCGGCG
* * * *
2455622 TTTTAAGTAAAGCGCCACCAACTATAAGTTCAAACGATGCCGTTTCCGCAACAGTTAACTCAAGC
65 TTTTAAGAAAAGCGCCACTAACTATAAGTTCAAACGATGCCGCTTCAGCAACAGTTAACTCAAGC
**
2455687 TTGTGGCGTTTCCAGAA
130 CCGTGGCGTTTCCAGAA
* ** * *
2455704 AAACGCCACTAATACCATAGACAAAACGACAAAATCTCAATAAACG-TAATTACATTTTTGCGGC
1 AAACGCCACTAATAACATAGACAAAACGACAACGTATCAATAAATGTTAA--ACATTTTTGCGGC
* *
2455768 GTTTTATGAAAAGTGCCACTAA
64 GTTTTAAGAAAAGCGCCACTAA
2455790 TAGCAACGTA
Statistics
Matches: 186, Mismatches: 39, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
145 1 0.01
146 19 0.10
147 159 0.85
148 7 0.04
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (146 bp):
AAACGCCACTAATAACATAGACAAAACGACAACGTATCAATAAATGTTAAACATTTTTGCGGCGT
TTTAAGAAAAGCGCCACTAACTATAAGTTCAAACGATGCCGCTTCAGCAACAGTTAACTCAAGCC
CGTGGCGTTTCCAGAA
Found at i:2457721 original size:73 final size:73
Alignment explanation
Indices: 2457641--2457826 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
2457631 AGATAAAAGG
***
2457641 TTTTTGCGGCGCTTTTTTAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGG
1 TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGG
2457706 CTTAGGTT
66 CTTAGGTT
2457714 TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGG
1 TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGG
2457779 CTTAGGTT
66 CTTAGGTT
2457787 TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAA
1 TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAA
2457827 GCATTAGCGG
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (73 bp):
TTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGG
CTTAGGTT
Found at i:2458175 original size:224 final size:223
Alignment explanation
Indices: 2457785--2458365 Score: 751
Period size: 224 Copynumber: 2.6 Consensus size: 223
2457775 TGGGCTTAGG
* ** *
2457785 TTTTTTTGCGGCGCTTTAACAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCATTCTTAAAA
1 TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCTTAAAA
* * * * * *
2457850 TGCCGCTAAAGCTCAC-AAATTG-TCAGAAAACAGTGCCGTTGGGCTTA-GT-TTTTGTTGCGAC
65 CGCCGCTAAATC-CACGAAA--GCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTT-TT-CGGC
* * **
2457911 GCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAATGCCACTAAAT
125 GCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAAT
*
2457976 CCCCGAAAGCTCAAAAAACGGCGTCGTTAGGC-T
190 CCCCGAAAGCTCAAAAAACAGCGTCGTTAGGCTT
*
2458009 TTTTTTTGTGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAATA
1 TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT-CTTAA-A
* * *
2458074 ACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAGGTATTTTTTCGGCGCTT
64 ACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCGGCGCTT
* * *
2458139 TCCCAAAAACGCCGTTAAAGCCCTGAGCATTAGCGGCGTTTACTTAAAAACACTACTAAATCCCC
129 TCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAATCCCC
* *
2458204 GAAAGCTCAGAAAACAGCGTCGTTGGGCTT
194 GAAAGCTCAAAAAACAGCGTCGTTAGGCTT
* * *
2458234 TGGTTTTTTGTGGCGCTTTCTCGAAAACGCCGCGAAAGCCCTGAGCATTAGCGGCGTTGTCTTAA
1 T--TTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCT-TCTT-A
* *
2458299 AAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTA-TTTTGCGGCGC
62 AAACGCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCGGCGC
2458363 TTT
127 TTT
2458366 ATGGAAAATG
Statistics
Matches: 314, Mismatches: 32, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
223 3 0.01
224 168 0.54
225 20 0.06
226 17 0.05
227 103 0.33
228 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (223 bp):
TTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCTTAAAAC
GCCGCTAAATCCACGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTTTCGGCGCTTTC
CCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACACCACTAAATCCCCGA
AAGCTCAAAAAACAGCGTCGTTAGGCTT
Found at i:2458291 original size:113 final size:113
Alignment explanation
Indices: 2457732--2458365 Score: 753
Period size: 114 Copynumber: 5.6 Consensus size: 113
2457722 GCGCTTTAAC
* * ** * * * *
2457732 AAAAACGCCGCTAAAGCCCTAAAAGTTTAGAAAACGACGCCGTTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGGC
** *
2457797 GCTTTAACAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCATT-CTT
65 GCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTACTT
* * * * * * * *
2457846 -AAAATGCCGCTAAAGCTCAC-AAATTG-TCAGAAAACAGTGCCGTTGGGCTTAGTTTTTGTTGC
1 AAAAACGCCACTAAATC-CCCGAAA--GCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT-TTGC
* *
2457908 GACGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
62 GGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
* * * *
2457960 AAAAATGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTAGGCTT---TTTTTTGTGGCG
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCG
*
2458022 CTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
66 CTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
* * *
2458070 AATAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCATTGGGCTTAGGTATTTTTTCGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGT-TTTTTGCGGC
* * *
2458135 GCTTTCCCAAAAACGCCGTTAAAGCCCTGAGCATTAGCGGCGTTTACTT
65 GCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
* * * * *
2458184 AAAAACACTACTAAATCCCCGAAAGCTCAGAAAACAGCGTCGTTGGGCTTTGGTTTTTTGTGGCG
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCG
* * *
2458249 CTTTCTCGAAAACGCCGCGAAAGCCCTGAGCATTAGCGGCG-TTGTCTT
66 CTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT-ACTT
* * *
2458297 AAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATTTTGCGGCG
1 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCG
2458362 CTTT
66 CTTT
2458366 ATGGAAAATG
Statistics
Matches: 452, Mismatches: 55, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
110 99 0.22
111 4 0.01
112 2 0.00
113 136 0.30
114 193 0.43
115 18 0.04
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (113 bp):
AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCG
CTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTT
Found at i:2458698 original size:40 final size:40
Alignment explanation
Indices: 2458643--2458757 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 40
2458633 GTTTGGATAA
2458643 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
* * *
2458683 AAAATGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
* * *
2458723 AAAACGCTGCTAAA-AACAAGCATTAGCGGCG-TTTT
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTT
2458758 CCAAAAAGCA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
38 4 0.06
39 14 0.21
40 48 0.73
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
Found at i:2458973 original size:41 final size:41
Alignment explanation
Indices: 2458811--2458960 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
2458801 TGAGCTTTCG
* * *
2458811 GGGCTTTAGCAGTGTTTTTGAGAAAACGCCGCTAATGC-CTA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC-A
* * *
2458852 GGGCTTTAGCGGTGTTTTTGGGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
* * *
2458893 GGGCTTTAGCGGCGTTTTTTAGAAAGTGTCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
*
2458934 GGGCTTTAGCGGCGTTTTTGATAAAGC
1 GGGCTTTAGCGGCGTTTTTGAGAAAGC
2458961 ACCACGAGTG
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 94 0.99
42 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.31
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCA
Found at i:2459013 original size:40 final size:40
Alignment explanation
Indices: 2458938--2459013 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
2458928 TGCTCAGGGC
* * *
2458938 TTTAGCGGCGTTTTTGATAAAGCACCACGAGTGCTCTATT
1 TTTAGCAGCGTTTTTGAAAAAGCACCACGAATGCTCTATT
* *
2458978 TTTAGCAGCGTTTTCT-AAAAAGCACCGCTAATGCTC
1 TTTAGCAGCGTTTT-TGAAAAAGCACCACGAATGCTC
2459014 AGGGATTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 29 0.97
41 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTAGCAGCGTTTTTGAAAAAGCACCACGAATGCTCTATT
Found at i:2459189 original size:14 final size:14
Alignment explanation
Indices: 2459170--2459271 Score: 64
Period size: 14 Copynumber: 7.1 Consensus size: 14
2459160 CGTTCGAGTA
*
2459170 TAGGGTTTTTGGTT
1 TAGGGTTTATGGTT
*
2459184 TAGGGTATATGGTT
1 TAGGGTTTATGGTT
* *
2459198 TAGAGTTTAAGGTT
1 TAGGGTTTATGGTT
*
2459212 TAGGCGTTACCAT--TT
1 TAGG-GTT--TATGGTT
* *
2459227 TAAGGTTTATGGAT
1 TAGGGTTTATGGTT
* *
2459241 TATGGGTTTAGGGGT
1 TA-GGGTTTATGGTT
*
2459256 TATGGTTTATGGTT
1 TAGGGTTTATGGTT
2459270 TA
1 TA
2459272 AAGGTTGGGG
Statistics
Matches: 65, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
12 2 0.03
14 43 0.66
15 19 0.29
17 1 0.02
ACGTcount: A:0.20, C:0.03, G:0.31, T:0.46
Consensus pattern (14 bp):
TAGGGTTTATGGTT
Found at i:2459250 original size:22 final size:21
Alignment explanation
Indices: 2459225--2459277 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
2459215 GCGTTACCAT
2459225 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTAT-GG
* * *
2459247 TTTAGGGGTTATGGTTTATGG
1 TTTAAGGTTTATGGATTATGG
2459268 TTTAAAGGTT
1 TTT-AAGGTT
2459278 GGGGTTTAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (21 bp):
TTTAAGGTTTATGGATTATGG
Found at i:2459283 original size:21 final size:21
Alignment explanation
Indices: 2459259--2459298 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2459249 TAGGGGTTAT
*
2459259 GGTTTATGGTTTAAAGGTTGG
1 GGTTTAAGGTTTAAAGGTTGG
*
2459280 GGTTTAAGGTTTAGAGGTT
1 GGTTTAAGGTTTAAAGGTT
2459299 ATGTGTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAAGGTTGG
Found at i:2459588 original size:14 final size:15
Alignment explanation
Indices: 2459562--2459599 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
2459552 AGTAATTATA
2459562 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
2459577 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
2459591 TATGG-TTTA
1 TATGGATTTA
2459600 AGGGTTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:2459646 original size:21 final size:22
Alignment explanation
Indices: 2459622--2459681 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
2459612 TAAGGTTTAA
2459622 GGGTTAGGAGTTAGGG-GTTAG
1 GGGTTAGGAGTTAGGGAGTTAG
** *
2459643 GGGTTAATAGTTAGGGATTTAG
1 GGGTTAGGAGTTAGGGAGTTAG
* *
2459665 GGTTTAGGATTTAGGGA
1 GGGTTAGGAGTTAGGGA
2459682 TTCAAGGGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 14 0.45
22 17 0.55
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.33
Consensus pattern (22 bp):
GGGTTAGGAGTTAGGGAGTTAG
Found at i:2460196 original size:15 final size:16
Alignment explanation
Indices: 2460171--2460201 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2460161 CTTGGTTTTT
2460171 TTAATTTTATAAAAAA
1 TTAATTTTATAAAAAA
2460187 TTAA-TTTATAAAAAA
1 TTAATTTTATAAAAAA
2460202 CAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATTTTATAAAAAA
Found at i:2463406 original size:48 final size:52
Alignment explanation
Indices: 2463336--2463434 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
2463326 AATAATTATT
2463336 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
2463384 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
2463435 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:2463416 original size:17 final size:17
Alignment explanation
Indices: 2463391--2463424 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2463381 ATAATTTTAA
*
2463391 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
2463408 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
2463425 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:2463441 original size:17 final size:16
Alignment explanation
Indices: 2463396--2463443 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
2463386 TTTAAATTTT
2463396 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
2463413 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
2463427 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
2463444 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:2463498 original size:54 final size:54
Alignment explanation
Indices: 2463440--2463618 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
2463430 ATAATCATAT
2463440 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
* * * * * * * *
2463494 ATTATATATTTTAATTATATT-ATATTTAATAATAATTATGTTATTTTA-TATTTTACAGTATCA
1 ATTAT-GA-TTTGAGTAAATTCATA--TAAGAAT-ATTA-ATTA-TTAAGAATTTT--A-T-T-A
2463557 TA
54 -A
*
2463559 TATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
1 -ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
2463614 ATTAT
1 ATTAT
2463619 ATATTTTAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 10 0.11
57 7 0.08
58 5 0.05
59 9 0.10
60 6 0.07
61 9 0.10
62 5 0.05
63 7 0.08
64 10 0.11
65 4 0.04
66 5 0.05
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (54 bp):
ATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAA
Found at i:2463501 original size:61 final size:61
Alignment explanation
Indices: 2463436--2463623 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
2463426 AGTTATAATC
2463436 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
2463497 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
2463556 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
2463617 ATATATT
1 ATATATT
2463624 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 30 0.32
60 14 0.15
61 38 0.40
62 6 0.06
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:2463515 original size:18 final size:17
Alignment explanation
Indices: 2463484--2463518 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
2463474 ATTATTAAGA
2463484 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
2463501 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
2463519 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:2463557 original size:120 final size:120
Alignment explanation
Indices: 2463433--2463655 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
2463423 ATTAGTTATA
2463433 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
2463498 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
*
2463553 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
2463618 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
2463656 TAAATATGAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGT
Found at i:2463632 original size:18 final size:17
Alignment explanation
Indices: 2463604--2463638 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
2463594 ATTATTAAGA
*
2463604 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
2463621 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
2463639 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:2463650 original size:54 final size:54
Alignment explanation
Indices: 2463467--2463652 Score: 142
Period size: 54 Copynumber: 3.2 Consensus size: 54
2463457 TTCATATAAG
* *
2463467 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATATTATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
* * * *
2463521 AATAATAATTATGT--TATTTTATATTTTACAGTATCATATATTATGGTTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--AT--TATA-TAT--TTTAATTAAATT-ATAT
**
2463584 AAG
53 -TT
* *
2463587 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
2463641 AATAATAATTAT
1 AATAATAATTAT
2463653 GTTTAAATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 4 0.04
54 24 0.24
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 13 0.13
67 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTATATTT
Found at i:2463759 original size:144 final size:147
Alignment explanation
Indices: 2463592--2463863 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
2463582 ATAAGAATAT
*
2463592 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
2463657 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
2463719 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
2463736 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
2463801 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
2463864 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:2463776 original size:18 final size:17
Alignment explanation
Indices: 2463748--2463782 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
2463738 ATTATTAAGA
*
2463748 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
2463765 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
2463783 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:2464033 original size:45 final size:44
Alignment explanation
Indices: 2463943--2464037 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 44
2463933 TTACATCTCT
*
2463943 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGTTTTACTATTACACCTCTATTCC
* *
2463987 ATTACATTCAACC-AA-ACAGTTAATTTGCTATTATACCTCTATTCC
1 ATTACATTCAACCAAACACAG-T--TTTACTATTACACCTCTATTCC
2464032 ATTACA
1 ATTACA
2464038 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
42 4 0.09
43 3 0.07
44 13 0.29
45 25 0.56
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGTTTTACTATTACACCTCTATTCC
Found at i:2464058 original size:21 final size:21
Alignment explanation
Indices: 2464029--2464071 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2464019 ATACCTCTAT
*
2464029 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
2464050 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
2464071 T
1 T
2464072 ACAGCGAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:2467176 original size:691 final size:692
Alignment explanation
Indices: 2465850--2467235 Score: 2693
Period size: 691 Copynumber: 2.0 Consensus size: 692
2465840 ATAGATAAGG
2465850 CTCATGAGTTGGGTATACTTGTTCTTATGGATATTGTGCACAGGTAATAGTTATGTCTGCAGGAG
1 CTCATGAGTTGGGTATACTTGTTCTTATGGATATTGTGCACAGGTAATAGTTATGTCTGCAGGAG
*
2465915 AATATAATTTCTAGAAACATGCCCTTTAGCTATATTTGATGTTATACTTTTTGTGCAAACATTTT
66 AATATAATTTCTAGAAACATGCCCTTCAGCTATATTTGATGTTATACTTTTTGTGCAAACATTTT
2465980 CCCTGATTGTTTTGTAAATAAAATGAAAACTTAAACTCTTCTGTGTTTGTTGTTAGATTTTTTGT
131 CCCTGATTGTTTTGTAAATAAAATGAAAACTTAAACTCTTCTGTGTTTGTTGTTAGATTTTTTGT
2466045 GCAAACAAAATTTCCTGGATTGTTTGTACAGGAAATGAGAACTTGAACTCTTATTCTTTTCCTAC
196 GCAAACAAAATTTCCTGGATTGTTTGTACAGGAAATGAGAACTTGAACTCTTATTCTTTTCCTAC
*
2466110 TTTGGCTTTATGCACATTTTTCCAGTAGACTTGATGTAAATATGGCCATGAGAATTTAGGCTCTT
261 TTTGGCTTTATGCACATTTTTCCAGTAGACTTGATGCAAATATGGCCATGAGAATTTAGGCTCTT
2466175 ATTGGTTGTCACTTTTACTCCTTCGTTTCTCTAGTTGATTTTTGCTTCCTAAAAGGTTGCTAAAA
326 ATTGGTTGTCACTTTTACTCCTTCGTTTCTCTAGTTGATTTTTGCTTCCTAAAAGGTTGCTAAAA
2466240 AATAAATCTAAAAGAGAGAAGCAAAGTCGTAATTGATTGAGAATATATAAATGACTAGAATACAA
391 AATAAATCTAAAAGAGAGAAGCAAAGTCGTAATTGATTGAGAATATATAAATGACTAGAATACAA
2466305 TAAAATTTCTAGTATGATTGTTCACGACCAGCTTGTTGTGAAAGCATTTGTTTGCTATATCCCCT
456 TAAAATTTCTAGTATGATTGTTCACGACCAGCTTGTTGTGAAAGCATTTGTTTGCTATATCCCCT
*
2466370 TTCATTTTTATTCTATAGTTAAGTTAAGTTGCTAATTTTATTTTCTTATCTACCTGTGTATCTGA
521 TTCATTTTTATTCTATAGTTAAGTTAAGTTGCTAATTTTATTTTATTATCTACCTGTGTATCTGA
2466435 ATGATGTTTTATGAATACAGCCATGCTTCCAATAATGTGTTAGATGGGCTGAACATGTTTGATGG
586 ATGATGTTTTATGAATACAGCCATGCTTCCAATAATGTGTTAGATGGGCTGAACATGTTTGATGG
*
2466500 AACTGATGGTCATTACTTCCACACGGGGTCAAGGGGTCATCA
651 AACTGATGGTCATTACTTCCACACGGGGTCAAGGGGTCACCA
2466542 CTCA-GAGTTGGGTATACTTGTTCTTATGGATATTGTGCACAGGTAATAGTTATGTCTGCAGGAG
1 CTCATGAGTTGGGTATACTTGTTCTTATGGATATTGTGCACAGGTAATAGTTATGTCTGCAGGAG
2466606 AATATAATTTCTAGAAACATGCCCTTCAGCTATATTTGATGTTATACTTTTTGTGCAAACATTTT
66 AATATAATTTCTAGAAACATGCCCTTCAGCTATATTTGATGTTATACTTTTTGTGCAAACATTTT
2466671 CCCTGATTGTTTTGTAAATAAAATGAAAACTTAAACTCTTCTGTGTTTGTTGTTAGATTTTTTGT
131 CCCTGATTGTTTTGTAAATAAAATGAAAACTTAAACTCTTCTGTGTTTGTTGTTAGATTTTTTGT
*
2466736 GCAAACAAAATTTCCTGGATTGTTTGTACAGGAAATGAGAACTTGAACTCTTATTCTTTTCCTGC
196 GCAAACAAAATTTCCTGGATTGTTTGTACAGGAAATGAGAACTTGAACTCTTATTCTTTTCCTAC
*
2466801 TTTGGCTTTATGCTCATTTTTCCAGTAGACTTGATGCAAATATGGCCATGAGAATTTAGGCTCTT
261 TTTGGCTTTATGCACATTTTTCCAGTAGACTTGATGCAAATATGGCCATGAGAATTTAGGCTCTT
2466866 ATTGGTTGTCACTTTTACTCCTTCGTTTCTCTAGTTGATTTTTGCTTCCTAAAAGGTTGCTAAAA
326 ATTGGTTGTCACTTTTACTCCTTCGTTTCTCTAGTTGATTTTTGCTTCCTAAAAGGTTGCTAAAA
*
2466931 AATAAATCTAAAAGAGAGAAGCAAAGTCGTAATTGATTGAGAATATATAAATGACTAGAATACTA
391 AATAAATCTAAAAGAGAGAAGCAAAGTCGTAATTGATTGAGAATATATAAATGACTAGAATACAA
*
2466996 TAAAATTTCTAGTATGCTTGTTCACGACCAGCTTGTTGTGAAAGCATTTGTTTGCTATATCCCCT
456 TAAAATTTCTAGTATGATTGTTCACGACCAGCTTGTTGTGAAAGCATTTGTTTGCTATATCCCCT
2467061 TTCATTTTTATTCTATAGTTAAGTTAAGTTGCTAATTTTATTTTATTATCTACCTGTGTATCTGA
521 TTCATTTTTATTCTATAGTTAAGTTAAGTTGCTAATTTTATTTTATTATCTACCTGTGTATCTGA
2467126 ATGATGTTTTATGAATACAGCCATGCTTCCAATAATGTGTTAGATGGGCTGAACATGTTTGATGG
586 ATGATGTTTTATGAATACAGCCATGCTTCCAATAATGTGTTAGATGGGCTGAACATGTTTGATGG
2467191 AACTGATGGTCATTACTTCCACACGGGGTCAAGGGGTCACCA
651 AACTGATGGTCATTACTTCCACACGGGGTCAAGGGGTCACCA
2467233 CTC
1 CTC
2467236 GGTGTGGGAT
Statistics
Matches: 686, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
691 682 0.99
692 4 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (692 bp):
CTCATGAGTTGGGTATACTTGTTCTTATGGATATTGTGCACAGGTAATAGTTATGTCTGCAGGAG
AATATAATTTCTAGAAACATGCCCTTCAGCTATATTTGATGTTATACTTTTTGTGCAAACATTTT
CCCTGATTGTTTTGTAAATAAAATGAAAACTTAAACTCTTCTGTGTTTGTTGTTAGATTTTTTGT
GCAAACAAAATTTCCTGGATTGTTTGTACAGGAAATGAGAACTTGAACTCTTATTCTTTTCCTAC
TTTGGCTTTATGCACATTTTTCCAGTAGACTTGATGCAAATATGGCCATGAGAATTTAGGCTCTT
ATTGGTTGTCACTTTTACTCCTTCGTTTCTCTAGTTGATTTTTGCTTCCTAAAAGGTTGCTAAAA
AATAAATCTAAAAGAGAGAAGCAAAGTCGTAATTGATTGAGAATATATAAATGACTAGAATACAA
TAAAATTTCTAGTATGATTGTTCACGACCAGCTTGTTGTGAAAGCATTTGTTTGCTATATCCCCT
TTCATTTTTATTCTATAGTTAAGTTAAGTTGCTAATTTTATTTTATTATCTACCTGTGTATCTGA
ATGATGTTTTATGAATACAGCCATGCTTCCAATAATGTGTTAGATGGGCTGAACATGTTTGATGG
AACTGATGGTCATTACTTCCACACGGGGTCAAGGGGTCACCA
Found at i:2467536 original size:43 final size:43
Alignment explanation
Indices: 2467469--2467555 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
2467459 CAATGATGTA
* *
2467469 CAAGATTTCCTTGATTAAATAAATGTATTATATCTTTTATTAC
1 CAAGATTTACTTGATTAAATAAATGCATTATATCTTTTATTAC
* *
2467512 CAAGATTTACTTGATTAAGA-AAATGCATTGTATGTTTTATTAC
1 CAAGATTTACTTGATTAA-ATAAATGCATTATATCTTTTATTAC
2467555 C
1 C
2467556 TTGCATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
CAAGATTTACTTGATTAAATAAATGCATTATATCTTTTATTAC
Found at i:2467899 original size:43 final size:43
Alignment explanation
Indices: 2467831--2468049 Score: 267
Period size: 43 Copynumber: 5.1 Consensus size: 43
2467821 TTTTAACGGT
* * * * **
2467831 GTTTGTGGGAAAAGTGCCACAAAAAGTCACGGCCTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * *
2467874 GTTTGTGGGAAAAGCGCTGCTAAAAGTCATGATCTTTAGCGAC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * *
2467917 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATAATCTTTAGTGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * *
2467960 GTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
* * * *
2468003 GTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
2468046 GTTT
1 GTTT
2468050 ATTTCTAAAA
Statistics
Matches: 156, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (43 bp):
GTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGC
Found at i:2471792 original size:34 final size:34
Alignment explanation
Indices: 2471744--2471810 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
2471734 AAATTCCTGT
2471744 GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
1 GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
2471778 GAAAAAAGCT-AGCAAAGAATATGGTTTTAGTAA
1 GAAAAAAG-TGAGCAAAGAATATGGTTTTAGTAA
2471811 ACGCCCATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (34 bp):
GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
Found at i:2474328 original size:202 final size:202
Alignment explanation
Indices: 2473981--2474353 Score: 611
Period size: 202 Copynumber: 1.8 Consensus size: 202
2473971 ATGTTATCAA
*
2473981 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAATAATACATTGCAATAATAATATGAGTTAC
1 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
**
2474046 AAATCAAATATCATCTCTACATCATCCAAACCATTACTCTATAGAGAGGACACTTCATTCCTAAC
66 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTATAGAGAGGACACTTCATTCCTAAC
* * * *
2474111 CTATGAAGAACGGACACGCCAGAAATCCCCTTGTACTGGTGCCAACACGTTGTCCGACAATGGAG
131 CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTGCCAACACGTTGTCCGACAATGGAG
2474176 ATGTCAG
196 ATGTCAG
* *
2474183 ATTTGTTGTTCAATTTGCTAATGCTAGCTCATCAAACAATTCATTGCAATAATAATATGAGTTAC
1 ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
* * *
2474248 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTATAGAGTGGACATTTCATTCCTAGC
66 AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTATAGAGAGGACACTTCATTCCTAAC
* **
2474313 CAATGAAGCACGGACAAGCTGGAAATCCCCTCGTACAGGTG
131 CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTG
2474354 TCGACATGGT
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
202 156 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (202 bp):
ATTTGTTGCTCAATTTGCTAATGCTAGCTCATCAAACAATACATTGCAATAATAATATGAGTTAC
AAATCAAATATCATCTCTACATCATCCAAACCATTAAACTATAGAGAGGACACTTCATTCCTAAC
CAATGAAGAACGGACAAGCCAGAAATCCCCTCGTACAGGTGCCAACACGTTGTCCGACAATGGAG
ATGTCAG
Found at i:2477012 original size:2 final size:2
Alignment explanation
Indices: 2477005--2477061 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
2476995 TACATATACA
* *
2477005 TG TG TG TG TG TA CG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
2477047 TG TG TG CG TG TG TG T
1 TG TG TG TG TG TG TG T
2477062 ACATATACAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.02, C:0.04, G:0.47, T:0.47
Consensus pattern (2 bp):
TG
Found at i:2482643 original size:50 final size:50
Alignment explanation
Indices: 2482519--2482685 Score: 187
Period size: 50 Copynumber: 3.4 Consensus size: 50
2482509 GATAATAACA
* * *
2482519 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* *
2482568 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** ** *
2482618 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
*
2482668 TGCCAACGCCATGTCCCA
1 TGCCAATGCCATGTCCCA
2482686 NNNNNNNNNN
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
48 4 0.04
49 38 0.38
50 58 0.58
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:2491867 original size:50 final size:50
Alignment explanation
Indices: 2491739--2491979 Score: 213
Period size: 49 Copynumber: 4.7 Consensus size: 50
2491729 GATAATAACA
* * *
2491739 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * *
2491788 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** ** *
2491838 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * *
2491888 TGCCAACG-CATGTCCCAGACATGGTCTTACATGGGACCTT-TCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCAT-A--TC---GG
* *
2491943 TGCCAATGCCATGTTCCAAACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
2491980 TCTCATCACC
Statistics
Matches: 156, Mismatches: 25, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
48 4 0.03
49 67 0.43
50 49 0.31
52 2 0.01
55 8 0.05
56 26 0.17
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:2496765 original size:75 final size:75
Alignment explanation
Indices: 2496642--2496786 Score: 290
Period size: 75 Copynumber: 1.9 Consensus size: 75
2496632 AAAAGATTGG
2496642 TGGCGACTCCCAATTTTCATTTTTTAAAGTCGACAACCTAAAAATTTTGTTTTTCAAAAAATGGT
1 TGGCGACTCCCAATTTTCATTTTTTAAAGTCGACAACCTAAAAATTTTGTTTTTCAAAAAATGGT
2496707 TTCGATAGCT
66 TTCGATAGCT
2496717 TGGCGACTCCCAATTTTCATTTTTTAAAGTCGACAACCTAAAAATTTTGTTTTTCAAAAAATGGT
1 TGGCGACTCCCAATTTTCATTTTTTAAAGTCGACAACCTAAAAATTTTGTTTTTCAAAAAATGGT
2496782 TTCGA
66 TTCGA
2496787 CAAACATCAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (75 bp):
TGGCGACTCCCAATTTTCATTTTTTAAAGTCGACAACCTAAAAATTTTGTTTTTCAAAAAATGGT
TTCGATAGCT
Found at i:2513091 original size:60 final size:63
Alignment explanation
Indices: 2512965--2513093 Score: 165
Period size: 64 Copynumber: 2.1 Consensus size: 63
2512955 AATTAATCAA
*
2512965 AATTTGATATTAAATTAATTAAAATTCAACATGTTAATAATTTAAGTGTATACATTTTGACAAG
1 AATTTGATATTAAATTAATTAAAATTCAACATGTTAATAA-TTAAGTATATACATTTTGACAAG
** * * **
2513029 AATTTGATATTAAATTAATTAAAATT-ATTAT-TTTATAA-TAATTATATATTTTTTGACAAG
1 AATTTGATATTAAATTAATTAAAATTCAACATGTTAATAATTAAGTATATACATTTTGACAAG
2513089 AATTT
1 AATTT
2513094 TACAGAAACT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 23 0.40
62 6 0.10
63 3 0.05
64 26 0.45
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (63 bp):
AATTTGATATTAAATTAATTAAAATTCAACATGTTAATAATTAAGTATATACATTTTGACAAG
Found at i:2514751 original size:19 final size:21
Alignment explanation
Indices: 2514713--2514751 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
2514703 TCTTTTTTAA
*
2514713 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
2514734 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
2514752 AAGAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:2514976 original size:21 final size:21
Alignment explanation
Indices: 2514950--2515046 Score: 162
Period size: 21 Copynumber: 4.7 Consensus size: 21
2514940 AATCATATCT
*
2514950 TCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATATCATA
2514971 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
2514992 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
2515013 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
*
2515032 TCTAAGATTGTATAT
1 TCTAAGATTGCATAT
2515047 CCTCGAAAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.25
21 54 0.75
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:2516537 original size:3 final size:3
Alignment explanation
Indices: 2516525--2516553 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
2516515 CTCTCTGGGA
2516525 TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
2516554 GGATCCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:2521473 original size:18 final size:18
Alignment explanation
Indices: 2521447--2521491 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
2521437 CGTTCGTTTC
2521447 CAAAACATTATTC-ATTT
1 CAAAACATTATTCAATTT
*
2521464 ACAAATCATTATTCAATTT
1 -CAAAACATTATTCAATTT
2521483 CAAAACATT
1 CAAAACATT
2521492 TTCTTATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (18 bp):
CAAAACATTATTCAATTT
Found at i:2524418 original size:138 final size:138
Alignment explanation
Indices: 2524170--2524787 Score: 958
Period size: 138 Copynumber: 4.5 Consensus size: 138
2524160 TAGAAAAAGG
* * *
2524170 AATTATATTCTTTCCAAAAGAATACTAATTTCCATGTCTTTTATATTTTGACTGAAAATAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
2524235 TATAATTGTTTATATTAATAAATTCGTTAAAATATATACAATTAATATTTTGAATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
2524300 CATATATT
131 CATATATT
* * *
2524308 AATTATATTCTTTCCAAAAGAACATTAACTTCCATGTCTTTTATATTTTGACCGGAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
2524373 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
2524438 CATATATT
131 CATATATT
* * * * ** *
2524446 AATTATATTCTTTTCGAAAGAATATTAATTTTCATGTATTTTATATTTCAACCGAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
2524511 TATAATTGTTTATATTTATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
2524576 CATATATT
131 CATATATT
* * *
2524584 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTGTGA-CTAGAATTACTTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGA-AATTAATTA
*
2524648 ATATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTT-ATATGAATCAAA
65 ATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGA-ATGAATCAAA
2524712 TTCATATATT
129 TTCATATATT
*
2524722 AATTATATTCTTTCCAAAAGAATATTAACTTT-CATGTC--TTATATTTTGACCAAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAA-TTTCCATGTCTTTTATATTTTGACCGAAATTAATTA
2524784 ATAT
65 ATAT
2524788 GTAACACCCC
Statistics
Matches: 437, Mismatches: 39, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
136 22 0.05
137 4 0.01
138 408 0.93
139 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATT
CATATATT
Found at i:2526754 original size:84 final size:84
Alignment explanation
Indices: 2526604--2526837 Score: 324
Period size: 84 Copynumber: 2.8 Consensus size: 84
2526594 CGTTACTTGG
* * * * * *
2526604 TGGATTCAACACTTAGCAACCACCTTAAATTCAGTGATACAGGGAATCAGCACATACCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTTAATTCAGTGATACGGGGAATCAACACATAGCAACCCCT
2526669 TTCACAATCAAAGATACGA
66 TTCACAATCAAAGATACGA
*
2526688 TGGAATCAGCACTTAGCAACCACCTTTATTTCAGTGATACGGGGAATCAACACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTTAATTCAGTGATACGGGGAATCAACACATAGCAACCCCT
* *
2526753 TTCACAATCAAATATACGG
66 TTCACAATCAAAGATACGA
* * * * * *
2526772 TGGAATCAGCACTTAGAAACCACCTTTAGAATCAATAATTCGGGGAATCAACACTTAGCAACCCC
1 TGGAATCAGCACTTAGCAACCACCTTTA-ATTCAGTGATACGGGGAATCAACACATAGCAACCCC
2526837 T
65 T
2526838 CGGGGAATCT
Statistics
Matches: 133, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
84 102 0.77
85 31 0.23
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (84 bp):
TGGAATCAGCACTTAGCAACCACCTTTAATTCAGTGATACGGGGAATCAACACATAGCAACCCCT
TTCACAATCAAAGATACGA
Found at i:2526827 original size:42 final size:41
Alignment explanation
Indices: 2526609--2526834 Score: 183
Period size: 43 Copynumber: 5.4 Consensus size: 41
2526599 CTTGGTGGAT
* * *
2526609 TCAACACTTAGCAACCACC-TTAAATTCAGTGATACAGGGAA
1 TCAACACTTAGCAACCACCTTTAAA-TCAATAATACGGGGAA
* * * *
2526650 TCAGCACATACCAACC-CCTTTCACAATCAA-AGATACGATGGAA
1 TCAACACTTAGCAACCACCTTT-A-AATCAATA-ATACG-GGGAA
* ** * *
2526693 TCAGCACTTAGCAACCACCTTTATTTCAGTGATACGGGGAA
1 TCAACACTTAGCAACCACCTTTAAATCAATAATACGGGGAA
*
2526734 TCAACACATAGCAACC-CCTTTCACAATCAA-ATATACGGTGGAA
1 TCAACACTTAGCAACCACCTTT-A-AATCAATA-ATACGG-GGAA
* * *
2526777 TCAGCACTTAGAAACCACCTTTAGAATCAATAATTCGGGGAA
1 TCAACACTTAGCAACCACCTTTA-AATCAATAATACGGGGAA
2526819 TCAACACTTAGCAACC
1 TCAACACTTAGCAACC
2526835 CCTCGGGGAA
Statistics
Matches: 145, Mismatches: 27, Indels: 25
0.74 0.14 0.13
Matches are distributed among these distances:
40 7 0.05
41 34 0.23
42 43 0.30
43 50 0.34
44 11 0.08
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (41 bp):
TCAACACTTAGCAACCACCTTTAAATCAATAATACGGGGAA
Found at i:2526840 original size:26 final size:26
Alignment explanation
Indices: 2526811--2526863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2526801 AATCAATAAT
2526811 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
** *
2526837 TCGGGGAATCTGCACTTAGCGACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
2526863 T
1 T
2526864 TTTTATCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:2541467 original size:3 final size:3
Alignment explanation
Indices: 2541459--2541496 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
2541449 AATTAAAGCT
2541459 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
2541497 GCCTTTGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:2547936 original size:3 final size:3
Alignment explanation
Indices: 2547928--2547969 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
2547918 CAGAATCTCC
2547928 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
2547970 TTGTTCCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:2550478 original size:285 final size:286
Alignment explanation
Indices: 2549935--2550523 Score: 1090
Period size: 285 Copynumber: 2.1 Consensus size: 286
2549925 GCTTCTTTGT
* **
2549935 TCTAAGAAGGTAGCAGGACCGAACAAGGTTTTGTGAAAAAATAACTTTAGTTTCTATATAAACCA
1 TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
*
2550000 ACAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
66 AAAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
2550065 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
131 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
*
2550130 AACATCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
196 AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
2550195 CTCAAGGCACCAATAAGAAAGTGGAG
261 CTCAAGGCACCAATAAGAAAGTGGAG
*
2550221 TCTAAGAAGGTAGCAGGGCCGAACAAGGTCTT-TGAAAAAATAACTGCAGTTTCTATATAAACCA
1 TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
2550285 AAAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
66 AAAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
*
2550350 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTCGTTATTTAAGATATTTTCAATCT
131 AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
*
2550415 AACAGCTCTTTTCCAATAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
196 AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
*
2550480 CTCAAGGCACCAATAAGAAAGTGGTG
261 CTCAAGGCACCAATAAGAAAGTGGAG
2550506 TCTAAGAAGGTAGCAGGA
1 TCTAAGAAGGTAGCAGGA
2550524 AAGTCTCTAA
Statistics
Matches: 293, Mismatches: 10, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
285 263 0.90
286 30 0.10
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (286 bp):
TCTAAGAAGGTAGCAGGACCGAACAAGGTCTTGTGAAAAAATAACTGCAGTTTCTATATAAACCA
AAAAAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTG
AATGTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAATCT
AACAGCTCTTTTCCAACAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGG
CTCAAGGCACCAATAAGAAAGTGGAG
Found at i:2550699 original size:235 final size:235
Alignment explanation
Indices: 2550288--2550740 Score: 843
Period size: 235 Copynumber: 1.9 Consensus size: 235
2550278 TAAACCAAAA
2550288 AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
1 AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
* *
2550353 GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTCGTTATTTAAGATATTTTCAATCTAAC
66 GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAAGCTAAC
* * *
2550418 AGCTCTTTTCCAATAGCTCTACCTCAACAACATTTTTTACAACTGTTCTAGGGTCAAATTGGCTC
131 AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
2550483 AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
196 AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
2550523 AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
1 AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
2550588 GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAAGCTAAC
66 GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAAGCTAAC
* *
2550653 ATCTCTTTTCCAACAACTCTACCTCAACAATATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
131 AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
2550718 AAGGCACCAATAAGAAAGTGGTG
196 AAGGCACCAATAAGAAAGTGGTG
2550741 AAACTAACAA
Statistics
Matches: 211, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
235 211 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (235 bp):
AAAGTCTCTAAAGGTTAAAGGCAGAAACTTAAAGTATTGACAAAGAGTTGCATTGACAACTGAAT
GTCTTCATAAAATACTTGAGAAGACAACAAGTATTCTTAGTTATTTAAGATATTTTCAAGCTAAC
AGCTCTTTTCCAACAACTCTACCTCAACAACATTTTTCACAACTGTTCTAGGGTCAAATTGGCTC
AAGGCACCAATAAGAAAGTGGTGTCTAAGAAGGTAGCAGG
Found at i:2561423 original size:31 final size:33
Alignment explanation
Indices: 2561378--2561438 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 33
2561368 TCTACTATTT
* **
2561378 TTTTAAGGTTAGAATAGTTTA-CTCCTAATGTA
1 TTTTAAGGATAGAATAAATTAGCTCCTAATGTA
2561410 TTTT-AGGATAGAATAAATTAGCTCCTAAT
1 TTTTAAGGATAGAATAAATTAGCTCCTAAT
2561439 TCTCATGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (33 bp):
TTTTAAGGATAGAATAAATTAGCTCCTAATGTA
Found at i:2567808 original size:18 final size:19
Alignment explanation
Indices: 2567785--2567822 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
2567775 TAATGATAAG
2567785 ATATG-TGAAATTTAAAAT
1 ATATGTTGAAATTTAAAAT
*
2567803 ATATGTTTAAATTTAAAAT
1 ATATGTTGAAATTTAAAAT
2567822 A
1 A
2567823 CTAAGTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
ATATGTTGAAATTTAAAAT
Found at i:2572503 original size:19 final size:19
Alignment explanation
Indices: 2572453--2572499 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
2572443 TTTTTTGAAA
* *
2572453 AAAATTAATTTTAATCAAGT
1 AAAATTAA-ATTAATCAAAT
2572473 AAAATTAAATTAATCAAAT
1 AAAATTAAATTAATCAAAT
2572492 -AAATTAAA
1 AAAATTAAA
2572500 ATTAGTATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.32
19 9 0.36
20 8 0.32
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAATTAAATTAATCAAAT
Found at i:2572929 original size:37 final size:37
Alignment explanation
Indices: 2572878--2572985 Score: 109
Period size: 37 Copynumber: 2.9 Consensus size: 37
2572868 ATTCCAAAAA
*
2572878 AAATATTATTTTAATAGTTTAATATTAAATTTAAT-TT
1 AAATATTATCTTAATAGTTTAATATT-AATTTAATATT
*
2572915 -AATACTTATCTTAATAGTATT-TTATTAATTTAATATT
1 AAATA-TTATCTTAATAGT-TTAATATTAATTTAATATT
*
2572952 AAAGTAATTATCTTAATA-TTAAAT-TTAATTTAAT
1 AAA-T-ATTATCTTAATAGTTTAATATTAATTTAAT
2572986 GTTTATCTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
36 12 0.20
37 29 0.48
38 6 0.10
39 12 0.20
40 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.52
Consensus pattern (37 bp):
AAATATTATCTTAATAGTTTAATATTAATTTAATATT
Found at i:2584591 original size:27 final size:27
Alignment explanation
Indices: 2584560--2584737 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
2584550 TAAATTGTAC
2584560 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
2584587 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
2584613 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
2584641 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
2584669 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
2584696 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
2584723 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
2584738 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:2584674 original size:82 final size:81
Alignment explanation
Indices: 2584561--2584716 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
2584551 AAATTGTACA
* *
2584561 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
2584625 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
2584642 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
2584707 TGCGAGTTGA
65 TGCGAATTGA
2584717 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:2584728 original size:82 final size:81
Alignment explanation
Indices: 2584557--2584737 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
2584547 GATTAAATTG
* *
2584557 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
2584622 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
2584638 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
2584702 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
2584720 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
2584738 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:2593510 original size:20 final size:20
Alignment explanation
Indices: 2593465--2593511 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
2593455 CATATATCAT
2593465 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTCTTTACTTAC
*
2593484 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTCTTTACTTAC
2593504 TTGCTTAC
1 TTGCTTAC
2593512 GTAAATAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (20 bp):
TTGCTTACTTCTTTACTTAC
Found at i:2593775 original size:49 final size:49
Alignment explanation
Indices: 2593715--2593956 Score: 225
Period size: 49 Copynumber: 4.8 Consensus size: 49
2593705 GATAATAACA
* * *
2593715 TGCCAAAGCCATGTCCCAGACATGGTCTCACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
* * * *
2593764 TGCCAATGCCATATCCCAGATATGGTCTTACATTGGATGTTTCCTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
* * * * * *
2593813 TGCCAATGTCATATCCCAGATATGGTTTTACATGGGA-GTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTAT-AC
* * * * *
2593863 TTCCCATGCCATGTCCCAGACATGGTCTTACTTGGGACCTCTCTTAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TGT-TT--CCT--ATAC
*
2593919 TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
2593957 CTGATCCCCT
Statistics
Matches: 158, Mismatches: 25, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
48 3 0.02
49 82 0.52
50 31 0.20
53 2 0.01
54 2 0.01
55 2 0.01
56 34 0.22
57 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
Found at i:2602553 original size:20 final size:20
Alignment explanation
Indices: 2602508--2602554 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
2602498 CATATATCAT
2602508 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTCTTTACTTAC
*
2602527 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTCTTTACTTAC
2602547 TTGCTTAC
1 TTGCTTAC
2602555 GTAAATAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (20 bp):
TTGCTTACTTCTTTACTTAC
Found at i:2602818 original size:49 final size:49
Alignment explanation
Indices: 2602758--2602999 Score: 225
Period size: 49 Copynumber: 4.8 Consensus size: 49
2602748 GGTAATAACA
* * *
2602758 TGCCAAAGCCATGTCCCAGACATGGTCTCACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
* * * *
2602807 TGCCAATGCCATATCCCAGATATGGTCTTACATTGGATGTTTCCTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
* * * * * *
2602856 TGCCAATGTCATATCCCAGATATGGTTTTACATGGGA-GTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTAT-AC
* * * * *
2602906 TTCCCATGCCATGTCCCAGACATGGTCTTACTTGGGACCTCTCTTAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TGT-TT--CCT--ATAC
*
2602962 TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
2603000 CTGATCCCCT
Statistics
Matches: 158, Mismatches: 25, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
48 3 0.02
49 82 0.52
50 31 0.20
53 2 0.01
54 2 0.01
55 2 0.01
56 34 0.22
57 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATAC
Found at i:2610037 original size:20 final size:20
Alignment explanation
Indices: 2610012--2610050 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2610002 TTGCTTCTTC
2610012 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTCTTACTTG
*
2610032 TTTACTTACTTTCTTACTT
1 TTTACTTACTCTCTTACTT
2610051 ATAACTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTACTTACTCTCTTACTTG
Found at i:2610374 original size:50 final size:50
Alignment explanation
Indices: 2610299--2610444 Score: 152
Period size: 50 Copynumber: 2.9 Consensus size: 50
2610289 TTTCCTGCAC
* * * * * * **
2610299 TGCCAATTCCATATCCCATATATGGTTTTACATGGGAGTTCTCATATCGG
1 TGCCAACTCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGG
* * *
2610349 TGCCCA-TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACT-CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGG
*
2610399 TGCCAACTCCATGTCCCAGACATGGTCTTA-TGTGGGACCTCTCATA
1 TGCCAACTCCATGTCCCAGACATGGTCTTACAG-GGGACCTCTCATA
2610445 ACCTCAATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.03
50 77 0.96
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACTCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGG
Found at i:2615108 original size:44 final size:44
Alignment explanation
Indices: 2615060--2615154 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
2615050 ATATCTCAAG
*
2615060 GTCCATGTTTATAACATGGAAATTAAGGAAGAATTGACGAAAAA
1 GTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAAAA
* * *
2615104 GTCCATATTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAAAA
*
2615148 GACCATG
1 GTCCATG
2615155 GTTTGACCAC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGAAATTAAGAAAGAATTGACGAAAAA
Found at i:2615236 original size:50 final size:47
Alignment explanation
Indices: 2615175--2615351 Score: 167
Period size: 50 Copynumber: 3.6 Consensus size: 47
2615165 GGTAGTAAGT
* *
2615175 GTGCCAATGTAAGACCATGTCTGGGACATGGCATTTGTACAGACCGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGTAC-GA--GAGGA
* * *
2615225 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAATAGAGAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGTACG---AGAGGA
** * * * * *
2615275 AAGTCAGTGTAAGACCATGTTTGGGAGATGGCATTGGCT-CGAGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAG-TACGAGAGGA
*
2615322 GTGCTAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGACCATGTCTGGGACATG
2615352 ACATCGGCAC
Statistics
Matches: 102, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
47 28 0.27
49 1 0.01
50 72 0.71
52 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.23
Consensus pattern (47 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGTACGAGAGGA
Found at i:2615351 original size:97 final size:99
Alignment explanation
Indices: 2615182--2615361 Score: 258
Period size: 97 Copynumber: 1.8 Consensus size: 99
2615172 AGTGTGCCAA
*
2615182 TGTAAGACCATGTCTGGGACATGGCATTTGTACAGACCGAGGAGTGCCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATTGGTACAGA-CGAGGAGTGCCAGTGTAAGACCATGTCT
*
2615247 GGGACATGGCATCAGCACGAATAGAGAAAAGTCAG
65 GGGACATGACATCAGCACGAATAGAGAAAAGTCAG
* * * *
2615282 TGTAAGACCATGTTTGGGAGATGGCATTGGCT-C-GA-GATGAGTGCTAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATTGG-TACAGACGAGGAGTGCCAGTGTAAGACCATGTCT
*
2615344 GGGACATGACATCGGCAC
65 GGGACATGACATCAGCAC
2615362 CGATATGTGA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
97 41 0.57
99 2 0.03
100 28 0.39
101 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.22
Consensus pattern (99 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGTACAGACGAGGAGTGCCAGTGTAAGACCATGTCTG
GGACATGACATCAGCACGAATAGAGAAAAGTCAG
Found at i:2618039 original size:25 final size:25
Alignment explanation
Indices: 2617984--2618039 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
2617974 TTAGATTTAT
*
2617984 ACTTGAATAGGGGATAGTGATTTCC
1 ACTTGAATAGGGGATAGTGAATTCC
*
2618009 AATTGAATAGGGGATAGTGAAATTCC
1 ACTTGAATAGGGGATAGTG-AATTCC
2618035 -CTTGA
1 ACTTGA
2618040 TCCTTCAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (25 bp):
ACTTGAATAGGGGATAGTGAATTCC
Found at i:2628953 original size:3 final size:3
Alignment explanation
Indices: 2628947--2628975 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
2628937 TGACAATAAT
2628947 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
2628976 TAGATGCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:2629929 original size:57 final size:57
Alignment explanation
Indices: 2629837--2629947 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 57
2629827 ACACGTATAA
* *
2629837 AGGAGACAAACAACTCTTCCGTTATATCAATAATCCTGCTGAGGATATAAACTATGG
1 AGGAGACAAACAACTCTTCCATTATATCAAGAATCCTGCTGAGGATATAAACTATGG
* * *
2629894 AGGAGACAAGCAACTCTTCCATTATATCAAGAATCCTGTTGAGGTTATAAACTA
1 AGGAGACAAACAACTCTTCCATTATATCAAGAATCCTGCTGAGGATATAAACTA
2629948 CATCGAGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (57 bp):
AGGAGACAAACAACTCTTCCATTATATCAAGAATCCTGCTGAGGATATAAACTATGG
Found at i:2640267 original size:40 final size:39
Alignment explanation
Indices: 2640169--2640431 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
2640159 TCCTCGTTCA
* * * *
2640169 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
2640208 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
2640247 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
2640287 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
2640327 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
2640367 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
2640408 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
2640432 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:2640391 original size:120 final size:119
Alignment explanation
Indices: 2640169--2640431 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
2640159 TCCTCGTTCA
* * *
2640169 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
2640234 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
2640287 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
2640352 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
2640408 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
2640432 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:2640440 original size:41 final size:41
Alignment explanation
Indices: 2640363--2640440 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
2640353 TTTGTATCTC
* * *
2640363 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
2640404 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
2640441 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:2648214 original size:40 final size:40
Alignment explanation
Indices: 2648116--2648458 Score: 424
Period size: 40 Copynumber: 8.6 Consensus size: 40
2648106 TCCTCGTTCA
* * * * *
2648116 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
2648155 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2648195 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2648235 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2648275 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
2648315 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
2648355 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
2648395 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
2648435 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
2648459 CAGCATTCAA
Statistics
Matches: 275, Mismatches: 23, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.14
40 224 0.81
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:2648467 original size:41 final size:41
Alignment explanation
Indices: 2648390--2648467 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
2648380 TTTGTATCTC
* * *
2648390 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
2648431 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
2648468 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:2656746 original size:37 final size:37
Alignment explanation
Indices: 2656695--2656781 Score: 113
Period size: 37 Copynumber: 2.3 Consensus size: 37
2656685 ACAAAATAGT
2656695 ATAATAGGCATGATTAAAACATGCAATCAGT-AGCAAAA
1 ATAAT-GGCATGATTAAAACATGCAATCAGTGA-CAAAA
* **
2656733 ATAATGGCATGATTCAAACATGTGATCAGTGACAAAA
1 ATAATGGCATGATTAAAACATGCAATCAGTGACAAAA
*
2656770 ATAGTGGCATGA
1 ATAATGGCATGA
2656782 ATTATAATGC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
37 38 0.86
38 6 0.14
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.23
Consensus pattern (37 bp):
ATAATGGCATGATTAAAACATGCAATCAGTGACAAAA
Found at i:2656962 original size:40 final size:40
Alignment explanation
Indices: 2656912--2657022 Score: 168
Period size: 40 Copynumber: 2.8 Consensus size: 40
2656902 TAACGTTACT
* * *
2656912 AGTCACAATTACAGATTAGTGGCTTATTTATAACATAATC
1 AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
* *
2656952 AGTCTTAATTACAAATCAGTGGCTTATTTATAACATAAAC
1 AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
2656992 AGTCTCAATTACAGATCAGTGGCTTACTTTA
1 AGTCTCAATTACAGATCAGTGGCTTA-TTTA
2657023 ATATCACAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 59 0.94
41 4 0.06
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (40 bp):
AGTCTCAATTACAGATCAGTGGCTTATTTATAACATAAAC
Found at i:2661047 original size:20 final size:20
Alignment explanation
Indices: 2661024--2661069 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
2661014 TTATCTACAT
* *
2661024 TATTGGTGGCTTGTCCATAA
1 TATTGGTAGCTTGTCCACAA
*
2661044 TATTGGTAGCTTGTCGACAA
1 TATTGGTAGCTTGTCCACAA
2661064 TATTGG
1 TATTGG
2661070 CAGTTTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.39
Consensus pattern (20 bp):
TATTGGTAGCTTGTCCACAA
Found at i:2661117 original size:60 final size:60
Alignment explanation
Indices: 2661012--2661167 Score: 174
Period size: 60 Copynumber: 2.6 Consensus size: 60
2661002 AGTACTGGTT
* * * *** * *
2661012 GTTTATCT-ACATTATTGGTGGCTTGTCCATAATATTGGTAGCTTGTCGACAATATTGGCA
1 GTTTATCTGA-ATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCGACAATACTGGCA
*
2661072 GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCTACAATACTGGCA
1 GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCGACAATACTGGCA
* *
2661132 GTTTATCTGCAA-TACTGGTAGATTGTCCACAA-ACTA
1 GTTTATCTG-AATTACTGGTGGCTTGTCCACAATACTA
2661168 GTGTGTTATT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
59 4 0.05
60 76 0.92
61 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (60 bp):
GTTTATCTGAATTACTGGTGGCTTGTCCACAATACTAACAACTTGTCGACAATACTGGCA
Found at i:2665949 original size:35 final size:34
Alignment explanation
Indices: 2665909--2666007 Score: 126
Period size: 35 Copynumber: 2.9 Consensus size: 34
2665899 ACGATTTAAC
2665909 ATAGTGGCATGCTTAACATGCGAATCAAACTCAGA
1 ATAGTGGCATGCTTAACATGCGAATCAAA-TCAGA
* *
2665944 CTAGTGGCATGCTTAACATGTGAATCATAATCAGA
1 ATAGTGGCATGCTTAACATGCGAATCA-AATCAGA
* * * *
2665979 ATAATAGCACGCTTAACACGCGAATCAAA
1 ATAGTGGCATGCTTAACATGCGAATCAAA
2666008 ATACCAATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 2 0.04
35 51 0.93
36 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (34 bp):
ATAGTGGCATGCTTAACATGCGAATCAAATCAGA
Found at i:2668108 original size:40 final size:40
Alignment explanation
Indices: 2668010--2668272 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
2668000 TCCTCGTTCA
* * * * *
2668010 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
2668049 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2668089 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
2668129 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
2668169 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
2668209 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
2668249 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
2668273 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:2674771 original size:39 final size:39
Alignment explanation
Indices: 2674607--2674789 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
2674597 TTGAATGCTG
* * * * * * *
2674607 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
2674647 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
2674687 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
2674727 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
2674766 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
2674790 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:2674809 original size:79 final size:80
Alignment explanation
Indices: 2674643--2674824 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
2674633 GCTAAGTGAA
* * * *
2674643 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
2674707 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
2674723 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
2674787 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
2674802 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
2674825 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:2679143 original size:19 final size:19
Alignment explanation
Indices: 2679119--2679156 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
2679109 TGGGTTGGGT
*
2679119 TGCGTATTGATGCAAGAAG
1 TGCGTATTAATGCAAGAAG
2679138 TGCGTATTAATGCAAGAAG
1 TGCGTATTAATGCAAGAAG
2679157 GTCGAGTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (19 bp):
TGCGTATTAATGCAAGAAG
Found at i:2682561 original size:40 final size:39
Alignment explanation
Indices: 2682530--2682739 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
2682520 GGACTAAGAT
* *
2682530 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
2682570 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
2682610 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
2682650 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
2682690 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
2682729 CCGAAGGCATT
1 CCGAAGGCATT
2682740 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:2682693 original size:120 final size:120
Alignment explanation
Indices: 2682477--2682739 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
2682467 TTGAATGCTG
* *
2682477 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
2682541 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
2682597 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
2682660 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
2682716 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
2682740 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:2682759 original size:79 final size:80
Alignment explanation
Indices: 2682478--2682774 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
2682468 TGAATGCTGT
* ** * * * **
2682478 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
2682541 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
2682558 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
2682622 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
2682638 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
2682702 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
2682717 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
2682775 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Done.