Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 92 of 141
Found at i:26008488 original size:40 final size:40
Alignment explanation
Indices: 26008444--26008552 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 40
26008434 CACATTTGCC
* * * *
26008444 GTCACACGGTCGTGTCTCGCGCACGGCCATACCTATGACA
1 GTCACACGGTCGTGTCTCACACACGGCCACACCTACGACA
* * * * *
26008484 GTCACATGATCGTGTCTCACAAACGGTCACACTTACGACA
1 GTCACACGGTCGTGTCTCACACACGGCCACACCTACGACA
*
26008524 GTCACACGGCCGTGTCTCACACACGGCCA
1 GTCACACGGTCGTGTCTCACACACGGCCA
26008553 GCCACAGAGT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.24, C:0.35, G:0.22, T:0.19
Consensus pattern (40 bp):
GTCACACGGTCGTGTCTCACACACGGCCACACCTACGACA
Found at i:26009112 original size:11 final size:11
Alignment explanation
Indices: 26009092--26009121 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26009082 GAGAGAGAAG
26009092 AATAAAATAAA
1 AATAAAATAAA
*
26009103 AATAAGATAAA
1 AATAAAATAAA
26009114 AATAAAAT
1 AATAAAAT
26009122 TGATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:26017408 original size:18 final size:17
Alignment explanation
Indices: 26017381--26017414 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26017371 TGTTTGATGA
*
26017381 TGAAATATTAAAGATATG
1 TGAAAGATTAAA-ATATG
26017399 TGAAAGATTAAAATAT
1 TGAAAGATTAAAATAT
26017415 TTTGTCTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (17 bp):
TGAAAGATTAAAATATG
Found at i:26018063 original size:44 final size:43
Alignment explanation
Indices: 26018013--26018127 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
26018003 TGTGTTATCG
*
26018013 TGTAAGACCACGTCTGGGACATTGGCATCAACT-TGTGACTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCAA-TATGT-AATTACA
** * * *
26018057 TGTAAGACCTTGTCTAGGACAGTGGCATCGATATGTAATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCAATATGTAATTACA
* *
26018100 TATAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
26018128 TGTACGAAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
43 29 0.50
44 29 0.50
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCAATATGTAATTACA
Found at i:26025254 original size:40 final size:40
Alignment explanation
Indices: 26025210--26025299 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
26025200 TACATTCCGT
* * *
26025210 CACACGGCCACACCTACGACAGTCACACGATCGTGTCTCG
1 CACACGGCCACACCTACGACAGTCACACGACCATGTCTCA
* *
26025250 CACACAGCCACACCTACGACAGTCACACGGCCATGTCTCA
1 CACACGGCCACACCTACGACAGTCACACGACCATGTCTCA
26025290 CACACGGCCA
1 CACACGGCCA
26025300 GCCACACGCC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.28, C:0.42, G:0.18, T:0.12
Consensus pattern (40 bp):
CACACGGCCACACCTACGACAGTCACACGACCATGTCTCA
Found at i:26025754 original size:16 final size:15
Alignment explanation
Indices: 26025733--26025764 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
26025723 TATAGCAAAC
26025733 AGAAATCAAAGAAAGA
1 AGAAATCAAA-AAAGA
26025749 AGAAATCAAAAAAGA
1 AGAAATCAAAAAAGA
26025764 A
1 A
26025765 AACGTTTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.72, C:0.06, G:0.16, T:0.06
Consensus pattern (15 bp):
AGAAATCAAAAAAGA
Found at i:26025845 original size:11 final size:11
Alignment explanation
Indices: 26025825--26025854 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26025815 GAGAGAGAAG
26025825 AATAAAATAAA
1 AATAAAATAAA
*
26025836 AATAAGATAAA
1 AATAAAATAAA
26025847 AATAAAAT
1 AATAAAAT
26025855 TGATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:26034111 original size:34 final size:35
Alignment explanation
Indices: 26034056--26034122 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
26034046 CAAACACCAG
*
26034056 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
26034091 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
26034123 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:26034516 original size:23 final size:25
Alignment explanation
Indices: 26034471--26034539 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 25
26034461 TGTTTGAAAA
* * *
26034471 TAATAAAAATATTTTTATTTAAAT-T
1 TAATATAAA-ATTATTATATAAATAT
26034496 TAATTATAAAA-TA-TATATAAATAT
1 TAA-TATAAAATTATTATATAAATAT
26034520 TAATATAAAATTATTATATA
1 TAATATAAAATTATTATATA
26034540 TTTTTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
23 15 0.41
24 7 0.19
25 10 0.27
26 5 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATAAAATTATTATATAAATAT
Found at i:26041160 original size:12 final size:12
Alignment explanation
Indices: 26041145--26041175 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26041135 AAAATAAAAT
26041145 AAAAATATATTC
1 AAAAATATATTC
26041157 AAAAATATATTC
1 AAAAATATATTC
26041169 AAAAATA
1 AAAAATA
26041176 CAAAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAATATATTC
Found at i:26042071 original size:13 final size:13
Alignment explanation
Indices: 26042053--26042085 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
26042043 TAGATTTTTC
26042053 CTAAATATTATCA-
1 CTAAATATTAT-AG
26042066 CTAAATATTATAG
1 CTAAATATTATAG
26042079 CTAAATA
1 CTAAATA
26042086 ATTCAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 1 0.05
13 18 0.95
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (13 bp):
CTAAATATTATAG
Found at i:26042887 original size:76 final size:76
Alignment explanation
Indices: 26042803--26042953 Score: 284
Period size: 76 Copynumber: 2.0 Consensus size: 76
26042793 AAGATTACTT
*
26042803 ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAATGATTATAATATACAAGTAATT
1 ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAATGATTATAATACACAAGTAATT
26042868 ACAAACAATTA
66 ACAAACAATTA
*
26042879 ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAATGATTATAATGCACAAGTAATT
1 ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAATGATTATAATACACAAGTAATT
26042944 ACAAACAATT
66 ACAAACAATT
26042954 CTGGCAAACC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (76 bp):
ATTTGAATTTAATTACAAACAATCAAATCTTAAAAATAAAAAATGATTATAATACACAAGTAATT
ACAAACAATTA
Found at i:26051253 original size:12 final size:13
Alignment explanation
Indices: 26051231--26051307 Score: 57
Period size: 13 Copynumber: 5.6 Consensus size: 13
26051221 TAAAATAGGG
26051231 AAATAAAAAAATA
1 AAATAAAAAAATA
26051244 AAATAAAAAATATTCGA
1 AAATAAAAAA-A-T--A
**
26051261 AAATGCAAAAATA
1 AAATAAAAAAATA
*
26051274 AAATTAAGAAAATA
1 AAA-TAAAAAAATA
* *
26051288 AAATAAATAGAT-
1 AAATAAAAAAATA
26051300 AAATAAAA
1 AAATAAAA
26051308 TATTTTTTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
12 7 0.14
13 20 0.40
14 11 0.22
15 2 0.04
16 1 0.02
17 9 0.18
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (13 bp):
AAATAAAAAAATA
Found at i:26052172 original size:23 final size:23
Alignment explanation
Indices: 26052145--26052192 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
26052135 GCTAGATTTT
26052145 TTCTAAATATTATAACTAAATAA
1 TTCTAAATATTATAACTAAATAA
*
26052168 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATAACTAAATAA
26052191 TT
1 TT
26052193 TGAAAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (23 bp):
TTCTAAATATTATAACTAAATAA
Found at i:26058457 original size:31 final size:31
Alignment explanation
Indices: 26058419--26058478 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
26058409 GATAGAATCT
*
26058419 AAGTTCAAAG-ACCAAAATGGATCTAGTTGTC
1 AAGTTC-AAGTACCAAAATGGACCTAGTTGTC
*
26058450 AAGTTCAAGTACCAAAGTGGACCTAGTTG
1 AAGTTCAAGTACCAAAATGGACCTAGTTG
26058479 CTAAATTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 3 0.12
31 23 0.88
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAGTTCAAGTACCAAAATGGACCTAGTTGTC
Found at i:26060257 original size:63 final size:63
Alignment explanation
Indices: 26060145--26060276 Score: 201
Period size: 63 Copynumber: 2.1 Consensus size: 63
26060135 CGTTGCTCTC
* * * * * *
26060145 GTTGGTGGTGGTGTCGGTGTAGCTCTGAGAAGCATTGTTTTCGTGCTGACTTGCATTTTCATT
1 GTTGTTGGTGGTGTCGGTGAAGCTCTGAGAAGCATTGTTCTCATCCTGACTTGCATCTTCATT
*
26060208 GTTGTTGGTGGTGTCGGTGAAGCTCTGAGATGCATTGTTCTCATCCTGACTTGCATCTTCATT
1 GTTGTTGGTGGTGTCGGTGAAGCTCTGAGAAGCATTGTTCTCATCCTGACTTGCATCTTCATT
26060271 GTTGTT
1 GTTGTT
26060277 ACTGCTCTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.13, C:0.16, G:0.30, T:0.42
Consensus pattern (63 bp):
GTTGTTGGTGGTGTCGGTGAAGCTCTGAGAAGCATTGTTCTCATCCTGACTTGCATCTTCATT
Found at i:26060309 original size:51 final size:51
Alignment explanation
Indices: 26060229--26060327 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
26060219 TGTCGGTGAA
26060229 GCTCTGAGATGCATTGTTCTCATCCTGACTTGCATCTTCATTGTTGTTACT
1 GCTCTGAGATGCATTGTTCTCATCCTGACTTGCATCTTCATTGTTGTTACT
* ** * *
26060280 GCTCTGAGCA-GCATTGTTCTCGTTTTGACTTGCATTTTCGTTGTTGTT
1 GCTCTGAG-ATGCATTGTTCTCATCCTGACTTGCATCTTCATTGTTGTT
26060328 GTTGCTGTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.45
Consensus pattern (51 bp):
GCTCTGAGATGCATTGTTCTCATCCTGACTTGCATCTTCATTGTTGTTACT
Found at i:26060393 original size:27 final size:27
Alignment explanation
Indices: 26060363--26060562 Score: 92
Period size: 27 Copynumber: 7.4 Consensus size: 27
26060353 CTCTGAGTCA
26060363 CATTGTTCTCGTTCTGACCTGCATTCT
1 CATTGTTCTCGTTCTGACCTGCATTCT
* * * * * * * **
26060390 CATTGTTGTCGGTGTTACTTGGAGTGG
1 CATTGTTCTCGTTCTGACCTGCATTCT
*
26060417 CATTGTTCTCGTTCTGACCCGCATTCT
1 CATTGTTCTCGTTCTGACCTGCATTCT
* * * *
26060444 CATTGTTCTCAGTGT-T-ACTTGGA-GCAG
1 CATTGTTCTC-GT-TCTGACCTGCATTC-T
*
26060471 CATTGTGCTCGTTCTGATCC-GCATTCT
1 CATTGTTCTCGTTCTGA-CCTGCATTCT
* *
26060498 GATTGTTCTCGGTGT-TG-CTCTG-AGTT-G
1 CATTGTTCTC-GT-TCTGAC-CTGCA-TTCT
* * *
26060525 CATTGCTCTCGTTCTGACTTGCATTTT
1 CATTGTTCTCGTTCTGACCTGCATTCT
26060552 CATTGTTCTCG
1 CATTGTTCTCG
26060563 GTGTTGCTCT
Statistics
Matches: 120, Mismatches: 37, Indels: 32
0.63 0.20 0.17
Matches are distributed among these distances:
25 2 0.02
26 13 0.11
27 91 0.76
28 12 0.10
29 2 0.02
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (27 bp):
CATTGTTCTCGTTCTGACCTGCATTCT
Found at i:26060744 original size:54 final size:54
Alignment explanation
Indices: 26060347--26060744 Score: 444
Period size: 54 Copynumber: 7.4 Consensus size: 54
26060337 GCTGTTGTCA
* * *
26060347 GTGTTGCTCTGAGTCA-CATTGTTCTCGTTCTGACCTGCATTCTCATTGTTGTCG
1 GTGTTGCTCTGAG-CAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
* ** * *
26060401 GTGTTACT-TGGAGTGGCATTGTTCTCGTTCTGACCCGCATTCTCATTGTTCTCA
1 GTGTTGCTCT-GAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
* * * * *
26060455 GTGTTACT-TGGAGCAGCATTGTGCTCGTTCTGATCCGCATTCTGATTGTTCTCG
1 GTGTTGCTCT-GAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
** * **
26060509 GTGTTGCTCTGAGTTGCATTGCTCTCGTTCTGACTTGCATTTTCATTGTTCTCG
1 GTGTTGCTCTGAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
* * *
26060563 GTGTTGCTCTGAGCAGCATTGCTCTCATTCTGACCCGCATTTTCATTGTTCTCA
1 GTGTTGCTCTGAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
* * * *
26060617 GTGTTGCTCTGAGCAGCATTGTTCTCATTCTGACCCACATTTTCATTGTTGTCA
1 GTGTTGCTCTGAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
* ** * *
26060671 GTGTTACTCTGAGTGGCATTCTTCTCGTCCTGACCCGCATTTTCATTGTTGCT-G
1 GTGTTGCTCTGAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTT-CTCG
* *
26060725 GTGTTGCTTTGTGCAGCATT
1 GTGTTGCTCTGAGCAGCATT
26060745 TTCATTTGAA
Statistics
Matches: 295, Mismatches: 45, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 292 0.99
55 2 0.01
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (54 bp):
GTGTTGCTCTGAGCAGCATTGTTCTCGTTCTGACCCGCATTTTCATTGTTCTCG
Found at i:26064673 original size:9 final size:9
Alignment explanation
Indices: 26064658--26064812 Score: 57
Period size: 10 Copynumber: 16.0 Consensus size: 9
26064648 GTCCAATTCA
26064658 AATTTTTAT
1 AATTTTTAT
* *
26064667 GATTTTTAA
1 AATTTTTAT
26064676 AATTTTTAT
1 AATTTTTAT
* *
26064685 AAAATTTTAA
1 -AATTTTTAT
*
26064695 ATATTTTTAAAA
1 A-ATTTTT--AT
26064707 AATATTTTATT
1 AAT-TTTTA-T
*
26064718 ATTTTATTAT
1 AATTT-TTAT
26064728 AATTTATTAT
1 AATTT-TTAT
26064738 --TTTTATAT
1 AATTTT-TAT
*
26064746 ATTTTTTTAT
1 A-ATTTTTAT
*
26064756 AATTTTTAG
1 AATTTTTAT
*
26064765 AAGTTTATAT
1 AA-TTTTTAT
26064775 AATTTTAATATT
1 AATTTT--TA-T
*
26064787 AATAATTT-T
1 AAT-TTTTAT
26064796 -ATTTTTAT
1 AATTTTTAT
26064804 AATTTTTAT
1 AATTTTTAT
26064813 TCTAATTTTT
Statistics
Matches: 111, Mismatches: 17, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
7 4 0.04
8 9 0.08
9 35 0.32
10 36 0.32
11 14 0.13
12 11 0.10
13 2 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (9 bp):
AATTTTTAT
Found at i:26064755 original size:18 final size:19
Alignment explanation
Indices: 26064708--26064755 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
26064698 TTTTTAAAAA
26064708 ATATTTTATTA-TTTTATT
1 ATATTTTATTATTTTTATT
*
26064726 ATAATTTATTATTTTTA-T
1 ATATTTTATTATTTTTATT
*
26064744 ATATTTTTTTAT
1 ATATTTTATTAT
26064756 AATTTTTAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
ATATTTTATTATTTTTATT
Found at i:26064781 original size:10 final size:10
Alignment explanation
Indices: 26064658--26064781 Score: 62
Period size: 10 Copynumber: 12.7 Consensus size: 10
26064648 GTCCAATTCA
26064658 AATTTT-TAT
1 AATTTTATAT
* *
26064667 GATTTT-TAA
1 AATTTTATAT
*
26064676 AATTTTTATAA
1 AA-TTTTATAT
*
26064687 AATTTTAAAT
1 AATTTTATAT
* * *
26064697 ATTTTTAAAA
1 AATTTTATAT
26064707 AATATTT-TAT
1 AAT-TTTATAT
*
26064717 TATTTTATTAT
1 AATTTTA-TAT
26064728 AA-TTTAT-T
1 AATTTTATAT
*
26064736 ATTTTTATAT
1 AATTTTATAT
* *
26064746 ATTTTTTTAT
1 AATTTTATAT
*
26064756 AATTTT-TAG
1 AATTTTATAT
*
26064765 AAGTTTATAT
1 AATTTTATAT
26064775 AATTTTA
1 AATTTTA
26064782 ATATTAATAA
Statistics
Matches: 88, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
8 2 0.02
9 24 0.27
10 50 0.57
11 12 0.14
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTATAT
Found at i:26066178 original size:26 final size:22
Alignment explanation
Indices: 26066121--26066163 Score: 77
Period size: 22 Copynumber: 1.9 Consensus size: 22
26066111 AACAAATATG
26066121 AATATAAATAAATATTTATATAA
1 AATA-AAATAAATATTTATATAA
26066144 AATAAAATAAATATTTATAT
1 AATAAAATAAATATTTATAT
26066164 TTAAAATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AATAAAATAAATATTTATATAA
Found at i:26067679 original size:21 final size:20
Alignment explanation
Indices: 26067648--26067699 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
26067638 ATTATAAACA
*
26067648 AACATTTTTTTTACAAAATTT
1 AACA-TTTTTTTACAAAAGTT
* *
26067669 AATCATTTTTTTCCATAAGTT
1 AA-CATTTTTTTACAAAAGTT
26067690 AACATTTTTT
1 AACATTTTTT
26067700 ATTTTTGTGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.30
21 17 0.63
22 2 0.07
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.54
Consensus pattern (20 bp):
AACATTTTTTTACAAAAGTT
Found at i:26068407 original size:124 final size:125
Alignment explanation
Indices: 26068219--26068472 Score: 449
Period size: 124 Copynumber: 2.0 Consensus size: 125
26068209 ACAATTCAAT
* *
26068219 GACATCAAGTTCAACACTAATACATATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACATATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
*
26068284 ATAA-ACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTAGCTTGAATAACA
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGCTTGAATAACA
*
26068343 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACATATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
*
26068408 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACA
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGCTTGAATAACA
26068468 -ACATC
1 GACATC
26068473 GTCCTGATAT
Statistics
Matches: 124, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
124 71 0.57
125 53 0.43
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (125 bp):
GACATCAAATTCAAAACTAATACATATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGCTTGAATAACA
Found at i:26069277 original size:497 final size:497
Alignment explanation
Indices: 26068343--26070017 Score: 3325
Period size: 497 Copynumber: 3.4 Consensus size: 497
26068333 TTGAATAACA
26068343 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
26068408 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
26068473 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
131 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
26068538 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
196 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
26068603 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
261 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
26068668 TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
326 TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
26068733 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
391 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
26068798 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
456 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
26068840 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
26068905 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
26068970 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
131 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
26069035 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
196 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
26069100 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
261 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
26069165 TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
326 TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
26069230 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
391 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
26069295 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
456 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
26069337 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
26069402 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
26069467 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
131 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
26069532 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
196 CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
26069597 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTC-AAAATAATTAACATGTTTCTATAACTT
261 AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
*
26069661 TTCACAATATATCCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
326 TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
*
26069726 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGTTCATAATTTAAAT
391 CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
26069791 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
456 CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
26069833 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
1 GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
26069898 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
66 ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
26069963 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCA
131 GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCA
26070018 TTTGTCACTT
Statistics
Matches: 1176, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
496 382 0.32
497 794 0.68
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (497 bp):
GACATCAAATTCAAAACTAATACGTATTTACCATTTAACTCAATGTTTATTGATTATACCATTCA
ATAACACATTTATGAAATTCTCAATTTAGCAATGAAAATATCACTTTAGTTTGAATAACAACATC
GTCCTGATATAAATACACTACCACTTATCCATTTACTTTAATTCTTTTGGGCCCAACCCCCCTTC
CCCGTATCCAACACCGGAATAGGGTACGAGGCATTACCAAAACACATACACTTGTAAACGTATTT
AACCGAGTTATAAAATTTCATCAAAATTAAAACTTTCAAAAATAATTAACATGTTTCTATAACTT
TTCACAATATATTCTCAAAATATTATAATCATAATAATTAGGGCCTGCGAGACCCGATACATACT
CATGCAATTTAATGCTTCATTTCCATTTCATTCAATTCGCAATTTCTCATGCTCATAATTTAAAT
CATATCACTAGCAATTTCCATTTAATTCACGTACAATTCAAT
Found at i:26070179 original size:37 final size:37
Alignment explanation
Indices: 26070118--26070383 Score: 392
Period size: 37 Copynumber: 7.0 Consensus size: 37
26070108 TACGTATGAT
* *
26070118 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
26070153 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26070190 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26070227 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26070264 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
26070301 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T--AGC
*
26070344 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 ---CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26070384 TAAAGCTATC
Statistics
Matches: 215, Mismatches: 5, Indels: 17
0.91 0.02 0.07
Matches are distributed among these distances:
35 9 0.04
36 3 0.01
37 159 0.74
39 2 0.01
40 4 0.02
41 1 0.00
42 1 0.00
43 4 0.02
44 2 0.01
46 30 0.14
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:26070354 original size:46 final size:46
Alignment explanation
Indices: 26070301--26070713 Score: 520
Period size: 46 Copynumber: 8.6 Consensus size: 46
26070291 TAAGTGTAGC
* *
26070301 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
26070347 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * * *
26070393 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
26070439 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
26070491 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
26070537 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
26070589 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
26070635 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
26070687 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
26070714 AGTACTCAAA
Statistics
Matches: 327, Mismatches: 22, Indels: 36
0.85 0.06 0.09
Matches are distributed among these distances:
46 198 0.61
48 2 0.01
49 2 0.01
50 2 0.01
52 123 0.38
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:26070501 original size:98 final size:98
Alignment explanation
Indices: 26070301--26070713 Score: 667
Period size: 98 Copynumber: 4.3 Consensus size: 98
26070291 TAAGTGTAGC
* * **
26070301 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
26070360 GTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
* * *
26070393 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
26070458 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
26070491 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
26070556 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
26070589 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
26070654 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
26070687 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
26070714 AGTACTCAAA
Statistics
Matches: 303, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
92 52 0.17
94 1 0.00
98 250 0.83
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:26073493 original size:15 final size:17
Alignment explanation
Indices: 26073466--26073499 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26073456 TAATGGATGG
26073466 AAATAATTATTTT-ATA
1 AAATAATTATTTTAATA
26073482 AAATAA-TATTTTAATA
1 AAATAATTATTTTAATA
26073498 AA
1 AA
26073500 TTTGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATAATTATTTTAATA
Found at i:26077558 original size:114 final size:114
Alignment explanation
Indices: 26077420--26077652 Score: 466
Period size: 114 Copynumber: 2.0 Consensus size: 114
26077410 GACAAAAAGG
26077420 AAAAAAGAGAAGGCAGAAAAGGAAAACAAACCTTTTTTCTTAAAACCTCGGGTGTTGAGCTTTTG
1 AAAAAAGAGAAGGCAGAAAAGGAAAACAAACCTTTTTTCTTAAAACCTCGGGTGTTGAGCTTTTG
26077485 TTTAAGCTACAATGGCCAACAAAGATTTGGGAAACAGAGACAAGTTACT
66 TTTAAGCTACAATGGCCAACAAAGATTTGGGAAACAGAGACAAGTTACT
26077534 AAAAAAGAGAAGGCAGAAAAGGAAAACAAACCTTTTTTCTTAAAACCTCGGGTGTTGAGCTTTTG
1 AAAAAAGAGAAGGCAGAAAAGGAAAACAAACCTTTTTTCTTAAAACCTCGGGTGTTGAGCTTTTG
26077599 TTTAAGCTACAATGGCCAACAAAGATTTGGGAAACAGAGACAAGTTACT
66 TTTAAGCTACAATGGCCAACAAAGATTTGGGAAACAGAGACAAGTTACT
26077648 AAAAA
1 AAAAA
26077653 TAATAGAAGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 119 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.23
Consensus pattern (114 bp):
AAAAAAGAGAAGGCAGAAAAGGAAAACAAACCTTTTTTCTTAAAACCTCGGGTGTTGAGCTTTTG
TTTAAGCTACAATGGCCAACAAAGATTTGGGAAACAGAGACAAGTTACT
Found at i:26084526 original size:47 final size:46
Alignment explanation
Indices: 26084474--26084570 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 46
26084464 AAGAAAAGGA
*
26084474 GATGTTAAATGATTGAGGGTATAATTTTAGCCAAAAAAAGTCTTTGT
1 GATGTTAAATGATTGAGGGTATAATTTTAGCC-AAAAAAGTCTCTGT
*
26084521 GATGTTAAATGATTGAGGGTATAATTTTAGGCAAAAAAGTCTCTGT
1 GATGTTAAATGATTGAGGGTATAATTTTAGCCAAAAAAGTCTCTGT
26084567 -ATGT
1 GATGT
26084571 AAGAAAATGT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 4 0.08
46 13 0.27
47 31 0.65
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (46 bp):
GATGTTAAATGATTGAGGGTATAATTTTAGCCAAAAAAGTCTCTGT
Found at i:26087735 original size:32 final size:32
Alignment explanation
Indices: 26087694--26087767 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
26087684 ATTACATCAA
26087694 TAGCAACAAGTACAAAAAAGATTTAAAATTGT
1 TAGCAACAAGTACAAAAAAGATTTAAAATTGT
26087726 TAGCAACAAGTACAAAAAAGATTTAAAATTGT
1 TAGCAACAAGTACAAAAAAGATTTAAAATTGT
*
26087758 TACCAACAAG
1 TAGCAACAAG
26087768 ATTTGAACCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (32 bp):
TAGCAACAAGTACAAAAAAGATTTAAAATTGT
Found at i:26091260 original size:44 final size:43
Alignment explanation
Indices: 26091166--26091267 Score: 149
Period size: 39 Copynumber: 2.4 Consensus size: 43
26091156 CGGATCTTAA
26091166 CATTACATTCAACCAAACACAAGATTACTATTACACCTCTATT
1 CATTACATTCAACCAAACACAAGATTACTATTACACCTCTATT
* *
26091209 C----CATTCAACCAAACATAAGATTACTATTACGCCTCTATT
1 CATTACATTCAACCAAACACAAGATTACTATTACACCTCTATT
26091248 CCATTACATTCAACCAAACA
1 -CATTACATTCAACCAAACA
26091268 GTTGATTTGC
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
39 36 0.69
40 1 0.02
43 1 0.02
44 14 0.27
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.28
Consensus pattern (43 bp):
CATTACATTCAACCAAACACAAGATTACTATTACACCTCTATT
Found at i:26091302 original size:16 final size:16
Alignment explanation
Indices: 26091281--26091316 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
26091271 GATTTGCTAT
*
26091281 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
26091297 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26091313 TACA
1 TACA
26091317 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26101489 original size:29 final size:29
Alignment explanation
Indices: 26101452--26101509 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
26101442 TAAATCAATT
26101452 CTAATCAATAATTTCA-TCAA-ATAAACCC
1 CTAATCAATAATTT-ATTCAACATAAACCC
*
26101480 CTAATTCAATCATTTATTCAACATAAACCC
1 CTAA-TCAATAATTTATTCAACATAAACCC
26101510 TACTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 5 0.19
29 13 0.50
30 8 0.31
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (29 bp):
CTAATCAATAATTTATTCAACATAAACCC
Found at i:26101705 original size:25 final size:25
Alignment explanation
Indices: 26101655--26101706 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
26101645 CCTATTTCTC
* * *
26101655 CTTTCTTTCTTTCCCTTTTTCTTTT
1 CTTTCTTTCTTTCCCCTATTCGTTT
26101680 CTTTCTTT-TTTCTCCCTATTCGTTT
1 CTTTCTTTCTTTC-CCCTATTCGTTT
26101705 CT
1 CT
26101707 ATTTTGTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.67
Consensus pattern (25 bp):
CTTTCTTTCTTTCCCCTATTCGTTT
Found at i:26101972 original size:41 final size:40
Alignment explanation
Indices: 26101892--26101972 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 40
26101882 TTCATTAATC
* *
26101892 TAATAATATAATATCAATTAAATAATAACAATAATTATTA
1 TAATAATATAATATCAATTAAATAACAACAATAAATATTA
* *
26101932 TAATAATAATAATATCTATTTAATAACAA-ATATAAATATTA
1 TAATAAT-ATAATATCAATTAAATAACAACA-ATAAATATTA
26101973 CAAATGTTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 8 0.23
41 27 0.77
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (40 bp):
TAATAATATAATATCAATTAAATAACAACAATAAATATTA
Found at i:26102085 original size:31 final size:30
Alignment explanation
Indices: 26102050--26102119 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
26102040 TATTTATCAT
26102050 ATAAAAAT-CTTTTACTAATTAATAATAAATA
1 ATAAAAATACTTTTACTAATT-AT-ATAAATA
* *
26102081 ATAAAATATATTTTTACTAATTATATATATA
1 ATAAAA-ATACTTTTACTAATTATATAAATA
*
26102112 ATACAAAT
1 ATAAAAAT
26102120 GTACTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 2 0.06
31 17 0.50
32 4 0.12
33 11 0.32
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAAATACTTTTACTAATTATATAAATA
Found at i:26107856 original size:25 final size:25
Alignment explanation
Indices: 26107828--26107883 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
26107818 ATTTGTTTTT
*
26107828 TTTAATAT-AATAA-TTATATTTAATA
1 TTTAATATAAATAACTTA-ATAT-ATA
*
26107853 TTTAACATAAATAACTTAATATATA
1 TTTAATATAAATAACTTAATATATA
26107878 TTTAAT
1 TTTAAT
26107884 TATTTTTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 15 0.58
26 8 0.31
27 3 0.12
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
TTTAATATAAATAACTTAATATATA
Found at i:26108031 original size:23 final size:20
Alignment explanation
Indices: 26107981--26108032 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 20
26107971 AAGAGCCGAA
26107981 ATTAAATTGTAATTTTTATG
1 ATTAAATTGTAATTTTTATG
26108001 ATAATAAATATGTAATTTTTAAATG
1 AT--TAAAT-TGTAATTTTT--ATG
26108026 ATTAAAT
1 ATTAAAT
26108033 CAAAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.07
22 5 0.19
23 15 0.56
25 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (20 bp):
ATTAAATTGTAATTTTTATG
Found at i:26109896 original size:21 final size:21
Alignment explanation
Indices: 26109872--26109942 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
26109862 TTTTCAGTGT
*
26109872 TATTTTGCTATTGTTTGCTAC
1 TATTTTGCTATTATTTGCTAC
* **
26109893 TATTTTGTTGCTATTTGCTAC
1 TATTTTGCTATTATTTGCTAC
* * *
26109914 TAGTTTACTATTATATTGTTAC
1 TATTTTGCTATTAT-TTGCTAC
26109936 TATTTTG
1 TATTTTG
26109943 TTGTTTTTAT
Statistics
Matches: 37, Mismatches: 12, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
21 26 0.70
22 11 0.30
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.58
Consensus pattern (21 bp):
TATTTTGCTATTATTTGCTAC
Found at i:26117723 original size:21 final size:21
Alignment explanation
Indices: 26117686--26117743 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
26117676 TTTAAAAATA
26117686 TTTTAAAATACTTTTTTT-AT
1 TTTTAAAATACTTTTTTTAAT
26117706 TTTTAAAATACTTTTTTTAAT
1 TTTTAAAATACTTTTTTTAAT
26117727 TTTCTAAAAT--TTTTTTT
1 TTT-TAAAATACTTTTTTT
26117744 GGTGTTTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 25 0.69
21 5 0.14
22 6 0.17
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTAAAATACTTTTTTTAAT
Found at i:26121111 original size:21 final size:21
Alignment explanation
Indices: 26121074--26121131 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
26121064 TTTAAAAATA
26121074 TTTTAAAATACTTTTTTT-AT
1 TTTTAAAATACTTTTTTTAAT
26121094 TTTTAAAATACTTTTTTTAAT
1 TTTTAAAATACTTTTTTTAAT
26121115 TTTCTAAAAT--TTTTTTT
1 TTT-TAAAATACTTTTTTT
26121132 GGTGTTTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 25 0.69
21 5 0.14
22 6 0.17
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTAAAATACTTTTTTTAAT
Found at i:26125455 original size:143 final size:143
Alignment explanation
Indices: 26125195--26125993 Score: 1100
Period size: 143 Copynumber: 5.6 Consensus size: 143
26125185 GATTAAAGTC
* * * *
26125195 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAAATTGAAGCAATCAACCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
* * * * * *
26125260 CTGAAGTTGCAGCGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGTAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACAG
26125325 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * *
26125338 ATTATGGTGGATCTTATCTTTCTAAAGTTGCAGT-GAAGCAGATTGAAGCCACCAGCCTTATCCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAA-CAGATTGAAGCCACCAGCCTTATCTC
* * *
26125402 CCTGAAGTTACAACGGAGCAGACTGAAGACAGGGAATCTTATTTCCCTAGCGTTGCAGTGGAACA
65 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACA
*
26125467 AATTAAAGCTACAA
130 GATTAAAGCTACAA
* * * *
26125481 ATTATGGCAGATCTTATCTTCCTGAAGTTGTAGTGGAACGGATTGAAGCCACCAACCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
* *
26125546 CTGAAGTTACAGCGGAGCAGACTAAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACAG
*
26125611 ATTAAAGCTATAA
131 ATTAAAGCTACAA
* * * * *
26125624 ATTATAGCGAACCTTATCTTCCTGAAGTTGCAGTGGAACATATTGAAGCCACTAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
* * *** *
26125689 CTAAAGTTGCAGCGGAGCAGACTGAATACAACAAATCTTATTTCTCTAGCGTTGCAGTAGAACAG
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACAG
26125754 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * *
26125767 ATTATGGTGGATCTTATCTT-TTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
* * * * * *
26125831 TTAAAGTTGCAACGGAGCAAACTGAAGACAGTGG-ATCTTATTTCTCTAGCGTTGTAGTTGAACA
66 CTGAAGTTGCAGCGGAGCAGACTGAAGACAG-GGAATCTTATTTCTCTAGCGTTGCAGTGGAACA
26125895 GATTAAAGCTACAA
130 GATTAAAGCTACAA
* * *
26125909 ATTATGGCGGATCTTATCTTCCTGAAGTCGCAGTGGAGCATATTGAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
* *
26125974 CTGAAGTTGTAGTGGAGCAG
66 CTGAAGTTGCAGCGGAGCAG
26125994 GTTGAAATTA
Statistics
Matches: 578, Mismatches: 74, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
142 131 0.23
143 444 0.77
144 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (143 bp):
ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCACCAGCCTTATCTCC
CTGAAGTTGCAGCGGAGCAGACTGAAGACAGGGAATCTTATTTCTCTAGCGTTGCAGTGGAACAG
ATTAAAGCTACAA
Found at i:26132381 original size:36 final size:36
Alignment explanation
Indices: 26132295--26132382 Score: 122
Period size: 36 Copynumber: 2.4 Consensus size: 36
26132285 TAGGCCCATG
* *
26132295 AAACGACATCGTTTTGGGCTTGAGAACCAATAGTCA
1 AAACAACATCGTTTTGGGCTTGAGAACCAATAGCCA
* * *
26132331 AAACAGCATTGTTTTGGGCTTGAGCACCAATAGCCA
1 AAACAACATCGTTTTGGGCTTGAGAACCAATAGCCA
*
26132367 AAACAACGTCGTTTTG
1 AAACAACATCGTTTTG
26132383 TTCTGTAACC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (36 bp):
AAACAACATCGTTTTGGGCTTGAGAACCAATAGCCA
Found at i:26132785 original size:18 final size:17
Alignment explanation
Indices: 26132731--26132787 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
26132721 AATAGTTTAA
26132731 TATTATT-TTATT-TAT
1 TATTATTATTATTGTAT
* * *
26132746 TATTATTAGTACTGCTAC
1 TATTATTATTATTG-TAT
26132764 TATTATTATTATTGGTAT
1 TATTATTATTATT-GTAT
26132782 TATTAT
1 TATTAT
26132788 ACTTATTACA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 7 0.22
16 3 0.09
18 21 0.66
19 1 0.03
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (17 bp):
TATTATTATTATTGTAT
Found at i:26140278 original size:10 final size:11
Alignment explanation
Indices: 26140254--26140278 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26140244 TTTGTACCTC
26140254 AAAATGTTTGA
1 AAAATGTTTGA
26140265 AAAATGTTTGA
1 AAAATGTTTGA
26140276 AAA
1 AAA
26140279 GATAGTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (11 bp):
AAAATGTTTGA
Found at i:26153820 original size:9 final size:9
Alignment explanation
Indices: 26153802--26153860 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
26153792 AGAATATTTC
26153802 AAAA-AAAG
1 AAAAGAAAG
26153810 AAAAGAAAG
1 AAAAGAAAG
26153819 AATAAG-AAG
1 AA-AAGAAAG
26153828 AAAAGATAAAG
1 AAAAG--AAAG
26153839 AAAAG-AAG
1 AAAAGAAAG
26153847 AAAAAGAAAG
1 -AAAAGAAAG
26153857 AAAA
1 AAAA
26153861 AAAATGAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
8 10 0.23
9 20 0.45
10 6 0.14
11 8 0.18
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:26153830 original size:18 final size:17
Alignment explanation
Indices: 26153802--26153860 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 17
26153792 AGAATATTTC
*
26153802 AAAAAAAGAAAAGAAAG
1 AAAAGAAGAAAAGAAAG
26153819 AATAAGAAGAAAAGATAAAG
1 AA-AAGAAGAAAAG--AAAG
26153839 AAAAGAAGAAAAAGAAAG
1 AAAAGAAG-AAAAGAAAG
26153857 AAAA
1 AAAA
26153861 AAAATGAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
17 2 0.05
18 18 0.49
19 6 0.16
20 11 0.30
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (17 bp):
AAAAGAAGAAAAGAAAG
Found at i:26153838 original size:6 final size:5
Alignment explanation
Indices: 26153805--26153869 Score: 52
Period size: 5 Copynumber: 13.6 Consensus size: 5
26153795 ATATTTCAAA
*
26153805 AAAAG AAAAG -AAAG AATAAG --AAG AAAAG ATAAAG AAAAG AAGA- AAAAG
1 AAAAG AAAAG AAAAG AA-AAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG
26153853 -AAAG AAAA- AAAATG AAA
1 AAAAG AAAAG AAAA-G AAA
26153870 GGAGAGGCCA
Statistics
Matches: 49, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
3 3 0.06
4 15 0.31
5 20 0.41
6 11 0.22
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (5 bp):
AAAAG
Found at i:26153839 original size:14 final size:14
Alignment explanation
Indices: 26153804--26153864 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
26153794 AATATTTCAA
*
26153804 AAAAAGAAAAGAAAG
1 AAAAAGAAGA-AAAG
*
26153819 AATAAGAAGAAAAG
1 AAAAAGAAGAAAAG
*
26153833 ATAAAGAA-AAGAAG
1 AAAAAGAAGAA-AAG
26153847 AAAAAGAAAGAAAA-
1 AAAAAG-AAGAAAAG
26153861 AAAA
1 AAAA
26153865 TGAAAGGAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 2 0.05
14 22 0.58
15 12 0.32
16 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAAAGAAGAAAAG
Found at i:26154823 original size:24 final size:24
Alignment explanation
Indices: 26154789--26154842 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
26154779 ATGTCCCAGA
* *
26154789 ATTACAGTGGACTT-AACCTTGAAG
1 ATTACAATGGA-TTAAACCTTAAAG
*
26154813 ATTACAATGGATTAAACTTTAAAG
1 ATTACAATGGATTAAACCTTAAAG
26154837 ATTACA
1 ATTACA
26154843 GTGGGGGGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (24 bp):
ATTACAATGGATTAAACCTTAAAG
Found at i:26155426 original size:89 final size:89
Alignment explanation
Indices: 26155216--26155452 Score: 307
Period size: 89 Copynumber: 2.7 Consensus size: 89
26155206 GTTGAAGATT
* *
26155216 GCAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAAATCGAAGACACAAGCCTTGCCTCCCTAAGT
1 GCAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCGAAGACACAAGCCTTACCTCCCTAAGT
*
26155281 TTGCAGCGGAGCAGACTAAAAGCA
66 TTGCAGCGGAACAGACTAAAAGCA
* * * * *
26155305 GTAGATCTTGTCTTCCTGTACCAGTAGCGAAGCAGATCGAAGACACAAGCTTTACCTCCCTGAGT
1 GCAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCGAAGACACAAGCCTTACCTCCCTAAGT
* *
26155370 TTGTAGTGGAACAGACTAAAAGCA
66 TTGCAGCGGAACAGACTAAAAGCA
* * * * * * *
26155394 GCAGATCTTGTCTTCTTATACTGGCAGTGAAGCAGATC-AA-AAACTAGCCTTATCTCCCT
1 GCAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCGAAGACACAAGCCTTACCTCCCT
26155453 GAGCAGCAAC
Statistics
Matches: 127, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
87 15 0.12
88 2 0.02
89 110 0.87
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (89 bp):
GCAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCGAAGACACAAGCCTTACCTCCCTAAGT
TTGCAGCGGAACAGACTAAAAGCA
Found at i:26155530 original size:87 final size:87
Alignment explanation
Indices: 26155439--26155601 Score: 247
Period size: 87 Copynumber: 1.9 Consensus size: 87
26155429 ATCAAAAACT
26155439 AGCCTTATCTCCCTGAGCAGCAAC-GTAATAGGTCAAAGATTGTAGATCTTATCCCCCTAAGCAG
1 AGCCTTATCTCCCTGAGCAGCAACAG-AATAGGTCAAAGATTGTAGATCTTATCCCCCTAAGCAG
*
26155503 TAGTGGAGCAGATCGAAAGCACC
65 TAGAGGAGCAGATCGAAAGCACC
* * * * * *
26155526 AGCCTTATCTCCTTGAGCAGTAGCAGAGTAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGCAACAGAATAGGTCAAAGATTGTAGATCTTATCCCCCTAAGCAGT
26155591 AGAGGAGCAGA
66 AGAGGAGCAGA
26155602 CAGAAGAAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 67 0.99
88 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (87 bp):
AGCCTTATCTCCCTGAGCAGCAACAGAATAGGTCAAAGATTGTAGATCTTATCCCCCTAAGCAGT
AGAGGAGCAGATCGAAAGCACC
Found at i:26155589 original size:44 final size:44
Alignment explanation
Indices: 26155467--26155592 Score: 114
Period size: 43 Copynumber: 2.9 Consensus size: 44
26155457 AGCAACGTAA
* * **
26155467 TAGGTCAAAGATTGTAGATCTTATCCCCCTAAGCAGTAGTGGAG
1 TAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAG
* * * * * * *
26155511 CAGATCGAA-A--GCACCAGCCTTATCTCCTTGAGCAGTAGCAGAG
1 TAGGTCGAAGATTGTA-GA-TCTTATCTCCCTAAGCAGTAGCAGAG
26155554 TAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAG
1 TAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAG
26155593 AGGAGCAGAC
Statistics
Matches: 59, Mismatches: 18, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
41 2 0.03
42 1 0.02
43 28 0.47
44 25 0.42
45 1 0.02
46 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25
Consensus pattern (44 bp):
TAGGTCGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAG
Found at i:26155945 original size:44 final size:45
Alignment explanation
Indices: 26155844--26156030 Score: 136
Period size: 44 Copynumber: 4.2 Consensus size: 45
26155834 GATAACAAAC
* * * * *
26155844 CTTAT-CTCACTGAAGTTGCAGTGGAGTGGATT-GAA-GCT-AAT
1 CTTATACTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAAT
26155885 CTTAT-CTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAAT
1 CTTATACTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAAT
* * * *
26155929 CTTATAC-CTCTGAAGTTGCAGTAG-GTCGGATTAAATCTTATCATAT
1 CTTATACTCCCTGAAGTTGCAGTAGAG-CGGATTAAAAC-GATGA-AT
* * * *
26155975 CAAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAAT
1 C--TTA-TA-CTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAAT
*
26156024 CCTATAC
1 CTTATAC
26156031 CTTTGAAGCT
Statistics
Matches: 116, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
41 29 0.25
42 2 0.02
43 3 0.03
44 34 0.29
45 5 0.04
46 5 0.04
47 2 0.02
48 2 0.02
49 5 0.04
50 4 0.03
51 24 0.21
52 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (45 bp):
CTTATACTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAAT
Found at i:26156051 original size:95 final size:94
Alignment explanation
Indices: 26155886--26156086 Score: 305
Period size: 95 Copynumber: 2.1 Consensus size: 94
26155876 GAAGCTAATC
* * * *
26155886 TTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACGATGAATCTTATACCTCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGCTGCAGT
26155951 AGGTCGGATTAAATCTTATCATATCAAATA
66 AGGTCGGATTAAATCTTATCATATCAAA-A
* *
26155981 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCTTTGAAGCTGCAG-
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGCTGCAGT
*
26156045 AGGGTCGGATTAAATCTTATCATATCAAAC
66 A-GGTCGGATTAAATCTTATCATATCAAAA
*
26156075 TTATCTCTCTGA
1 TTATCTCCCTGA
26156087 GGTCGCAATA
Statistics
Matches: 97, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
94 12 0.12
95 85 0.88
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (94 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGCTGCAGT
AGGTCGGATTAAATCTTATCATATCAAAA
Found at i:26156902 original size:13 final size:13
Alignment explanation
Indices: 26156880--26156912 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26156870 CGTTTCTTTA
26156880 TTTATCTTTATTT
1 TTTATCTTTATTT
*
26156893 TTTATTTTTATTT
1 TTTATCTTTATTT
26156906 TTT-TCTT
1 TTTATCTT
26156913 ACAAATGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTATCTTTATTT
Found at i:26157790 original size:4 final size:4
Alignment explanation
Indices: 26157781--26157824 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
26157771 AAATCTTCGT
26157781 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
26157825 TACATTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:26166401 original size:16 final size:16
Alignment explanation
Indices: 26166380--26166432 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
26166370 TTGGTTCGCT
26166380 GTAATGGAATAGAAGC
1 GTAATGGAATAGAAGC
*
26166396 GTAATGGAATAGATGC
1 GTAATGGAATAGAAGC
* * *
26166412 ATAATGGATTAGAGGC
1 GTAATGGAATAGAAGC
26166428 GTAAT
1 GTAAT
26166433 AGCAATTCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.25
Consensus pattern (16 bp):
GTAATGGAATAGAAGC
Found at i:26166464 original size:45 final size:44
Alignment explanation
Indices: 26166413--26166508 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
26166403 AATAGATGCA
* *
26166413 TAATGGATTAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAATG
1 TAATGGAATAGAGACGTAATAG-AATTC-ATGTGTTTGGTTGAATG
* *
26166458 TAATGGAATAGAGACGTAATAGTATTCTTGTGTTTGGTTGAATG
1 TAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAATG
*
26166502 GAATGGA
1 TAATGGA
26166509 GGTGTAATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 24 0.53
45 20 0.44
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.35
Consensus pattern (44 bp):
TAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAATG
Found at i:26166692 original size:18 final size:17
Alignment explanation
Indices: 26166671--26166705 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26166661 TTATTATTAA
*
26166671 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26166689 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26166706 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26166874 original size:120 final size:120
Alignment explanation
Indices: 26166661--26167058 Score: 760
Period size: 120 Copynumber: 3.3 Consensus size: 120
26166651 TTTCACATAT
* *
26166661 TTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
1 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
26166726 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
66 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
26166781 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
1 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
26166846 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
66 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
26166901 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
1 TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
26166966 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
66 ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
* *
26167021 TAATTATTAAATATAATTTAATAGAAATATATAATTTA
1 TTATTATTAAATATAATTTAATAAAAATATATAATTTA
26167059 CATATATTGC
Statistics
Matches: 274, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 274 1.00
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
TTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTT
ATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAA
Found at i:26167025 original size:13 final size:12
Alignment explanation
Indices: 26167001--26167041 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
26166991 TATAATACTA
26167001 TAAAATATAATT
1 TAAAATATAATT
26167013 TAAAATAATAATT
1 TAAAAT-ATAATT
*
26167026 ATTAAATATAATT
1 -TAAAATATAATT
26167039 TAA
1 TAA
26167042 TAGAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:26167576 original size:93 final size:93
Alignment explanation
Indices: 26167417--26167604 Score: 367
Period size: 93 Copynumber: 2.0 Consensus size: 93
26167407 TGTTGAATAA
*
26167417 GATCAAGAAGGCAAATCTGTTGACAAGTTGCAGTACTGCCTCAATATCTCAGTTCATGCACAAAC
1 GATCAAGAAGGCAAATATGTTGACAAGTTGCAGTACTGCCTCAATATCTCAGTTCATGCACAAAC
26167482 ATAAATCAAGCATTCATTGGAAGAAATT
66 ATAAATCAAGCATTCATTGGAAGAAATT
26167510 GATCAAGAAGGCAAATATGTTGACAAGTTGCAGTACTGCCTCAATATCTCAGTTCATGCACAAAC
1 GATCAAGAAGGCAAATATGTTGACAAGTTGCAGTACTGCCTCAATATCTCAGTTCATGCACAAAC
26167575 ATAAATCAAGCATTCATTGGAAGAAATT
66 ATAAATCAAGCATTCATTGGAAGAAATT
26167603 GA
1 GA
26167605 AGCACTTGAA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 94 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (93 bp):
GATCAAGAAGGCAAATATGTTGACAAGTTGCAGTACTGCCTCAATATCTCAGTTCATGCACAAAC
ATAAATCAAGCATTCATTGGAAGAAATT
Found at i:26186636 original size:21 final size:21
Alignment explanation
Indices: 26186612--26186657 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26186602 AATCCAAAAT
26186612 AATAGTACATAAT-AATTTTAA
1 AATAGTA-ATAATAAATTTTAA
* *
26186633 AATATTAATGATAAATTTTAA
1 AATAGTAATAATAAATTTTAA
26186654 AATA
1 AATA
26186658 AATATACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (21 bp):
AATAGTAATAATAAATTTTAA
Found at i:26186693 original size:25 final size:24
Alignment explanation
Indices: 26186597--26186752 Score: 98
Period size: 24 Copynumber: 6.8 Consensus size: 24
26186587 TAAACATATG
**
26186597 TGATAAATCCAAAATAAT-AGTACA
1 TGATAAATTTAAAATAATGA-TACA
* *
26186621 TAATAATTTTAAAAT-AT--TA-A
1 TGATAAATTTAAAATAATGATACA
26186641 TGATAAATTTTAAAATAAAT-ATACA
1 TGATAAA-TTTAAAAT-AATGATACA
*
26186666 TGATAAATTTAAAATAATGTTAC-
1 TGATAAATTTAAAATAATGATACA
* *
26186689 -GATGAATTTAAAATAATGATA-T
1 TGATAAATTTAAAATAATGATACA
* * *
26186711 TGATAAA-TTACAAATAATAAAACG
1 TGATAAATTTA-AAATAATGATACA
* *
26186735 TGATAAATCTAAATTAAT
1 TGATAAATTTAAAATAAT
26186753 AATATACAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 22
0.74 0.10 0.15
Matches are distributed among these distances:
20 6 0.06
21 10 0.09
22 22 0.21
23 21 0.20
24 37 0.35
25 10 0.09
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (24 bp):
TGATAAATTTAAAATAATGATACA
Found at i:26186702 original size:46 final size:45
Alignment explanation
Indices: 26186607--26186728 Score: 117
Period size: 45 Copynumber: 2.7 Consensus size: 45
26186597 TGATAAATCC
* * *
26186607 AAAATAATAGTACATAATAATTTTAAAAT-ATTAATGATAAATTTT
1 AAAATAATA-TACATGATAAATTTAAAATAATTAACGATAAATTTT
* *
26186652 AAAATAAATATACATGATAAATTTAAAATAATGTTACGATGAA-TTT
1 AAAAT-AATATACATGATAAATTTAAAATAAT-TAACGATAAATTTT
*
26186698 AAAATAATGATA-TTGATAAA-TTACAAATAAT
1 AAAATAAT-ATACATGATAAATTTA-AAATAAT
26186729 AAAACGTGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
44 3 0.05
45 39 0.59
46 17 0.26
47 7 0.11
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (45 bp):
AAAATAATATACATGATAAATTTAAAATAATTAACGATAAATTTT
Found at i:26186725 original size:23 final size:21
Alignment explanation
Indices: 26186665--26186728 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
26186655 ATAAATATAC
*
26186665 ATGATAAATTTAAAATAATGTT
1 ATGATAAA-TTAAAATAATGAT
* *
26186687 ACGATGAATTTAAAATAATGAT
1 ATGAT-AAATTAAAATAATGAT
26186709 ATTGATAAATTACAAATAAT
1 A-TGATAAATTA-AAATAAT
26186729 AAAACGTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 22 0.65
23 12 0.35
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (21 bp):
ATGATAAATTAAAATAATGAT
Found at i:26186802 original size:24 final size:23
Alignment explanation
Indices: 26186633--26186802 Score: 91
Period size: 24 Copynumber: 7.1 Consensus size: 23
26186623 ATAATTTTAA
26186633 AATATTAATGATAAATTTTAAAAT
1 AATATTAATGATAAA-TTTAAAAT
26186657 AA-ATATACATGATAAATTTAAAAT
1 AATAT-TA-ATGATAAATTTAAAAT
* * *
26186681 AATGTT-ACGATGAATTTAAAAT
1 AATATTAATGATAAATTTAAAAT
*
26186703 AATGA-TATTGATAAA-TTACAAAT
1 AAT-ATTAATGATAAATTTA-AAAT
* * *
26186726 AATA-AAACGTGATAAATCTAAATT
1 AATATTAA--TGATAAATTTAAAAT
* **
26186750 AATAATATACAATAAA-TTAACTTAGAT
1 AATATTA-ATGATAAATTTAA---A-AT
26186777 AATATTAATGATAAATTTAATAAT
1 AATATTAATGATAAATTTAA-AAT
26186801 AA
1 AA
26186803 GTTTAAACAT
Statistics
Matches: 111, Mismatches: 19, Indels: 32
0.69 0.12 0.20
Matches are distributed among these distances:
22 23 0.21
23 17 0.15
24 38 0.34
25 14 0.13
26 8 0.07
27 11 0.10
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
AATATTAATGATAAATTTAAAAT
Found at i:26187618 original size:23 final size:22
Alignment explanation
Indices: 26187588--26187632 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26187578 AAATTAAATC
26187588 TCTAAGATTACAAAATCTTATCT
1 TCTAAGATTAC-AAATCTTATCT
* *
26187611 TCTAAGATTGCATATCTTATCT
1 TCTAAGATTACAAATCTTATCT
26187633 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (22 bp):
TCTAAGATTACAAATCTTATCT
Found at i:26188481 original size:21 final size:19
Alignment explanation
Indices: 26188457--26188498 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
26188447 AAATATTTTA
26188457 AAAAATTCAAAAGATAAAAAT
1 AAAAATTCAAAA-A-AAAAAT
*
26188478 AAAAATTCATAAAAAAAAT
1 AAAAATTCAAAAAAAAAAT
26188497 AA
1 AA
26188499 GCATGAACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 11 0.55
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAAATTCAAAAAAAAAAT
Found at i:26203390 original size:30 final size:31
Alignment explanation
Indices: 26203356--26203418 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
26203346 ATTAACATCC
26203356 CAATGACTTAAAT-AAAAATTTCAAATAGTT
1 CAATGACTTAAATGAAAAATTTCAAATAGTT
*
26203386 CAATGACTTAAATGAAAACTTTCAAATAGTT
1 CAATGACTTAAATGAAAAATTTCAAATAGTT
26203417 CA
1 CA
26203419 GTGAGCATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATGAAAAATTTCAAATAGTT
Found at i:26234378 original size:46 final size:45
Alignment explanation
Indices: 26234311--26234554 Score: 294
Period size: 46 Copynumber: 5.6 Consensus size: 45
26234301 TTTGAGTACT
* *
26234311 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
26234357 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
26234393 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
*
26234439 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* * *
26234485 TCTAATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
26234530 TCTGATC-AG-GGACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
26234555 ATCTTACGTA
Statistics
Matches: 175, Mismatches: 13, Indels: 23
0.83 0.06 0.11
Matches are distributed among these distances:
36 28 0.16
38 1 0.01
39 1 0.01
40 3 0.02
41 1 0.01
42 4 0.02
43 15 0.09
44 3 0.02
45 19 0.11
46 100 0.57
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:26234393 original size:36 final size:36
Alignment explanation
Indices: 26234347--26234419 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
26234337 GGTAGCTTTA
26234347 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
26234383 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
26234419 G
1 G
26234420 TTAGCCTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:26234414 original size:82 final size:85
Alignment explanation
Indices: 26234311--26234554 Score: 302
Period size: 82 Copynumber: 2.8 Consensus size: 85
26234301 TTTGAGTACT
* *
26234311 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAGTGAAAAAGT
26234376 GATAAGTG-C-TA-T-ACTTA
65 GATAAGTGCCTTACTAACTTA
* *
26234393 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAAGTGAGAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAAGTGAAAAAGT
26234458 GATAAGTGGTAGCCTTAGCTACACTTA
65 GATAA---GT-GCCTTA-CTA-ACTTA
* * * *
26234485 TCTAATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATC-AG-GGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAAAAAGTG
26234548 ATAAGTG
66 ATAAGTG
26234555 ATCTTACGTA
Statistics
Matches: 141, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
82 64 0.45
83 1 0.01
85 3 0.02
86 3 0.02
87 1 0.01
88 2 0.01
89 10 0.07
90 3 0.02
91 20 0.14
92 34 0.24
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (85 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGAAAAAGTG
ATAAGTGCCTTACTAACTTA
Found at i:26239047 original size:41 final size:41
Alignment explanation
Indices: 26238990--26239149 Score: 241
Period size: 41 Copynumber: 3.9 Consensus size: 41
26238980 AATGAGATAA
* *
26238990 TTCAGACTTTACGTCTAGTAGGCTTGATGCCGATGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
26239031 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
* * *
26239072 TTCAGACTTTACGTCTAGCAGGCTTGACGTCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
* *
26239113 TTCAGACTTTACGTCTAGTAGGC-TAATTGCCGGTGAA
1 TTCAGACTTTACGTCTAGCAGGCTTGA-TGCCGGTGAA
26239150 TCTGTTGAAA
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 2 0.02
41 107 0.98
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
Found at i:26241255 original size:23 final size:23
Alignment explanation
Indices: 26241225--26241270 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
26241215 TGCACTTTCT
*
26241225 TTTAACAAGTCCTAAGTTTGAAA
1 TTTAACAAGTCCTAAGTTCGAAA
26241248 TTTAACAAGTCCTAAGTTCGAAA
1 TTTAACAAGTCCTAAGTTCGAAA
26241271 CCCTTCCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (23 bp):
TTTAACAAGTCCTAAGTTCGAAA
Found at i:26245930 original size:110 final size:110
Alignment explanation
Indices: 26245691--26245917 Score: 404
Period size: 110 Copynumber: 2.1 Consensus size: 110
26245681 TATACCGAAA
26245691 TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAATTAAAAAAAATTTGTACTGTGACT
1 TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAATTAAAAAAAATTTGTACTGTGACT
26245756 GGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTAT
66 GGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTAT
26245801 TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAA-TAAAAAAAATTTTGTACTGTGTA
1 TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAATTAAAAAAAA-TTTGTACTGTG-A
* *
26245865 TTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA-TTTTTTTTTGT
64 CTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTAT
26245911 TTTTTTC
1 TTTTTTC
26245918 TTTTTCGTAT
Statistics
Matches: 113, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
109 9 0.08
110 69 0.61
111 35 0.31
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (110 bp):
TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAATTAAAAAAAATTTGTACTGTGACT
GGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTAT
Found at i:26248385 original size:36 final size:36
Alignment explanation
Indices: 26248336--26248408 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
26248326 TCTCCCCGAG
* * *
26248336 ACGAAGGCACTTTGATTTTGATTTATACACTCGGGA
1 ACGAAGGCACTTTGACTTTGACTTATACAATCGGGA
**
26248372 ACGAAGGTGCTTTGACTTTGACTTATACAATCGGGA
1 ACGAAGGCACTTTGACTTTGACTTATACAATCGGGA
26248408 A
1 A
26248409 GGATAGCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (36 bp):
ACGAAGGCACTTTGACTTTGACTTATACAATCGGGA
Found at i:26251296 original size:14 final size:14
Alignment explanation
Indices: 26251277--26251316 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
26251267 TTGATAGCCA
26251277 GTAAAATGTTTTCT
1 GTAAAATGTTTTCT
*
26251291 GTAAAATGATTTCT
1 GTAAAATGTTTTCT
*
26251305 GGAAAATGTTTT
1 GTAAAATGTTTT
26251317 ACTTTTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (14 bp):
GTAAAATGTTTTCT
Found at i:26251325 original size:20 final size:20
Alignment explanation
Indices: 26251300--26251339 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26251290 TGTAAAATGA
*
26251300 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
26251320 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
26251340 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:26251328 original size:34 final size:35
Alignment explanation
Indices: 26251285--26251351 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
26251275 CAGTAAAATG
*
26251285 TTTTCTGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
26251319 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
26251352 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:26251355 original size:14 final size:15
Alignment explanation
Indices: 26251279--26251355 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 15
26251269 GATAGCCAGT
*
26251279 AAAATG-TTTTCTGT
1 AAAATGATTTTCTGG
26251293 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
26251307 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
26251327 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
26251342 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
26251356 TGTTTGATTG
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 26 0.51
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:26264669 original size:27 final size:28
Alignment explanation
Indices: 26264609--26264680 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 28
26264599 AAAAATAAAA
*
26264609 ATTTACCAAAATGT-TATAACTTTTTTTTT
1 ATTTACCAAAATATATATAA--TTTTTTTT
26264638 ATTTACCAAAATATATATAA-TTTTTTT
1 ATTTACCAAAATATATATAATTTTTTTT
26264665 ATTTACCAAAATATAT
1 ATTTACCAAAATATAT
26264681 TAAAAAAACA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 23 0.56
29 13 0.32
30 5 0.12
ACGTcount: A:0.39, C:0.10, G:0.01, T:0.50
Consensus pattern (28 bp):
ATTTACCAAAATATATATAATTTTTTTT
Found at i:26264702 original size:16 final size:17
Alignment explanation
Indices: 26264681--26264713 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26264671 CAAAATATAT
26264681 TAAAAAA-ACAAAAAAA
1 TAAAAAATACAAAAAAA
*
26264697 TAAAAAATAGAAAAAAA
1 TAAAAAATACAAAAAAA
26264714 AACCTGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.09
Consensus pattern (17 bp):
TAAAAAATACAAAAAAA
Found at i:26264842 original size:27 final size:27
Alignment explanation
Indices: 26264745--26264829 Score: 161
Period size: 27 Copynumber: 3.1 Consensus size: 27
26264735 TCCCTGGTGG
*
26264745 AGGGAACACTGTTGGCGGCACCAAACA
1 AGGGAACCCTGTTGGCGGCACCAAACA
26264772 AGGGAACCCTGTTGGCGGCACCAAACA
1 AGGGAACCCTGTTGGCGGCACCAAACA
26264799 AGGGAACCCTGTTGGCGGCACCAAACA
1 AGGGAACCCTGTTGGCGGCACCAAACA
26264826 AGGG
1 AGGG
26264830 TTCCTTGTTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.31, C:0.27, G:0.32, T:0.11
Consensus pattern (27 bp):
AGGGAACCCTGTTGGCGGCACCAAACA
Found at i:26265692 original size:15 final size:14
Alignment explanation
Indices: 26265652--26265680 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26265642 TTTTTGTATC
26265652 AATTTAATTATTCT
1 AATTTAATTATTCT
26265666 AATTTAATTATTCT
1 AATTTAATTATTCT
26265680 A
1 A
26265681 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:26268084 original size:18 final size:18
Alignment explanation
Indices: 26268058--26268095 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26268048 ATCCCAATGA
* *
26268058 TCGCCACCACCTTCTTCT
1 TCGCAACCACATTCTTCT
26268076 TCGCAACCACATTCTTCT
1 TCGCAACCACATTCTTCT
26268094 TC
1 TC
26268096 ACCACCAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.45, G:0.05, T:0.34
Consensus pattern (18 bp):
TCGCAACCACATTCTTCT
Found at i:26268102 original size:18 final size:18
Alignment explanation
Indices: 26268061--26268102 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26268051 CCAATGATCG
* *
26268061 CCACCACCTTCTTCTTCG
1 CCACCACATTCTTCTTCA
*
26268079 CAACCACATTCTTCTTCA
1 CCACCACATTCTTCTTCA
26268097 CCACCA
1 CCACCA
26268103 ACCATATCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (18 bp):
CCACCACATTCTTCTTCA
Found at i:26269024 original size:24 final size:24
Alignment explanation
Indices: 26268987--26269059 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 24
26268977 GGTAAGACAT
*
26268987 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACTGCTCCTCTCTTCACCC
*
26269011 TTTCCACTGTTCCTCTCTTCACCC
1 TTTCCACTGCTCCTCTCTTCACCC
*
26269035 TTTCCA-TAGCTCCTCTATTCACCC
1 TTTCCACT-GCTCCTCTCTTCACCC
26269059 T
1 T
26269060 ATCGATTGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.02
24 43 0.98
ACGTcount: A:0.12, C:0.45, G:0.04, T:0.38
Consensus pattern (24 bp):
TTTCCACTGCTCCTCTCTTCACCC
Found at i:26273936 original size:27 final size:27
Alignment explanation
Indices: 26273868--26273942 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
26273858 ATTCCTCCAC
* **
26273868 TGGTGCCGCCAACAAGGAACCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
26273895 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
26273922 TGGTGCCGCCAACAGTGTTCC
1 TGGTGCCGCCAACAGGGTTCC
26273943 ATCCATTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.16, C:0.31, G:0.28, T:0.25
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:26274009 original size:19 final size:19
Alignment explanation
Indices: 26273974--26274010 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26273964 ATCAGTCCAG
*
26273974 ATTTTTTTTTCTGTTTTTT
1 ATTTTTTTTTATGTTTTTT
26273993 ATTTTTTTTTAT-TTTTTT
1 ATTTTTTTTTATGTTTTTT
26274011 GATATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.08, C:0.03, G:0.03, T:0.86
Consensus pattern (19 bp):
ATTTTTTTTTATGTTTTTT
Found at i:26274046 original size:26 final size:27
Alignment explanation
Indices: 26274012--26274074 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
26274002 TATTTTTTTG
26274012 ATAT-ATTTTGATAAAT-AAAAAAATT
1 ATATAATTTTGATAAATGAAAAAAATT
26274037 ATATAATTTTGATAAATGAAAAAAATT
1 ATATAATTTTGATAAATGAAAAAAATT
26274064 ATA-ACATTTTG
1 ATATA-ATTTTG
26274075 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
25 4 0.11
26 13 0.37
27 18 0.51
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (27 bp):
ATATAATTTTGATAAATGAAAAAAATT
Found at i:26274058 original size:25 final size:25
Alignment explanation
Indices: 26274012--26274066 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 25
26274002 TATTTTTTTG
26274012 ATATATTTTGATAAATAAAAAAATT
1 ATATATTTTGATAAATAAAAAAATT
26274037 ATATAATTTTGATAAATGAAAAAAATT
1 ATAT-ATTTTGATAAAT-AAAAAAATT
26274064 ATA
1 ATA
26274067 ACATTTTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (25 bp):
ATATATTTTGATAAATAAAAAAATT
Found at i:26275387 original size:31 final size:30
Alignment explanation
Indices: 26275305--26275387 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 30
26275295 GATTTGTTAT
26275305 TTTTATTAAAGTTTAGTGATTGAATTGTA--A
1 TTTTATTAAAGTTTAGTGATT--ATTGTATTA
* * *
26275335 TTTT-TTAAAGTTTAATAATTATTTTATTA
1 TTTTATTAAAGTTTAGTGATTATTGTATTA
*
26275364 TTTTAATTAAAGTTGAGTGATTAT
1 TTTT-ATTAAAGTTTAGTGATTAT
26275388 CAGTTTACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 5 0.12
29 19 0.44
30 4 0.09
31 15 0.35
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (30 bp):
TTTTATTAAAGTTTAGTGATTATTGTATTA
Found at i:26276223 original size:16 final size:16
Alignment explanation
Indices: 26276202--26276237 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26276192 CTTTTTTGTA
* *
26276202 AATTTATAATAAATTC
1 AATTTATAAGAAATGC
26276218 AATTTATAAGAAATGC
1 AATTTATAAGAAATGC
26276234 AATT
1 AATT
26276238 ACTTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
AATTTATAAGAAATGC
Found at i:26276408 original size:7 final size:7
Alignment explanation
Indices: 26276394--26276430 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
26276384 ATAAATGGAG
26276394 AAAA-GA
1 AAAAGGA
26276400 AAAAGGA
1 AAAAGGA
26276407 AAAAGGA
1 AAAAGGA
26276414 AAAAGGA
1 AAAAGGA
26276421 AAAAGGA
1 AAAAGGA
26276428 AAA
1 AAA
26276431 CATCCTTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.13
7 26 0.87
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (7 bp):
AAAAGGA
Found at i:26279843 original size:39 final size:39
Alignment explanation
Indices: 26279789--26279869 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
26279779 CAAGATTCCG
26279789 GGAGTCCTTGTCAGTGTAGCAGACTAACTTCTGATTTGA
1 GGAGTCCTTGTCAGTGTAGCAGACTAACTTCTGATTTGA
*
26279828 GGAGTCCTTTTCAGTGTAGCAGACTAACTTCTGATTTGA
1 GGAGTCCTTGTCAGTGTAGCAGACTAACTTCTGATTTGA
26279867 GGA
1 GGA
26279870 TTTTGACTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.33
Consensus pattern (39 bp):
GGAGTCCTTGTCAGTGTAGCAGACTAACTTCTGATTTGA
Found at i:26294999 original size:89 final size:89
Alignment explanation
Indices: 26294892--26296138 Score: 1784
Period size: 89 Copynumber: 14.1 Consensus size: 89
26294882 GACTGGATAT
* * * * ** * * *
26294892 GATCTGCTATTTTTGATCTACTTCACTGCCAGTACAGGAAGGTAAGATCTGTTATCCTT-GATCT
1 GATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTAT-CTTCAATCC
* * * * *
26294956 ACTTC-ATGCCAATACATGAAGACAA
64 ACTTCGCTACCAATATAGGAAGACAG
** * * * * *** *
26294981 GATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGCTATCTTCAATCCA
1 GATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCA
26295046 CTTCGCTACCAATATAGGAAGACAG
65 CTTCGCTACCAATATAGGAAGACAG
* * * * *
26295071 GATTTGCTTTCTTCGATCTATTTCACGCCAATACATGAAGACAAGATTTGC-ATCTTCGATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295135 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295159 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295224 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295248 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295313 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295337 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295402 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295426 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295491 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295515 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295580 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295604 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295669 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295693 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295758 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
26295782 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
26295847 TTCGCTACCAATATAGGAAGACAG
66 TTCGCTACCAATATAGGAAGACAG
* ** * * *
26295871 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTAATTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
* * * *
26295936 TTCGCCACCAGTATGGGAAGACAA
66 TTCGCTACCAATATAGGAAGACAG
* * * * * * * * *
26295960 GATCTAC-ATCTTCGATCAACTTC-CTACCAATATAGGAAGACATGACCTGCTATCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCTTCAATCCA
* * * * * *
26296023 CTTCAC-GCTAATACATGAAGACAA
65 CTTCGCTACCAATATAGGAAGACAG
* * * * *** *
26296047 TATCTGCTTTCTTTGATCTACTTCACCACCAATATGGGAAGAC-A-A---G--ATCTTCGATCCA
1 GATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCA
*
26296105 CTTC-CTACCAATATAGGAAGACAA
65 CTTCGCTACCAATATAGGAAGACAG
26296129 GATCTGCTAT
1 GATCTGCTAT
26296139 TTTCAACCTA
Statistics
Matches: 1071, Mismatches: 78, Indels: 25
0.91 0.07 0.02
Matches are distributed among these distances:
81 1 0.00
82 37 0.03
84 1 0.00
87 19 0.02
88 148 0.14
89 828 0.77
90 37 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (89 bp):
GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCAATCCAC
TTCGCTACCAATATAGGAAGACAG
Found at i:26296117 original size:37 final size:38
Alignment explanation
Indices: 26296056--26296133 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
26296046 ATATCTGCTT
* * *
26296056 TCTTTGATCTACTTCACCACCAATATGGGAAGACAAGA
1 TCTTCGATCCACTTCACCACCAATATAGGAAGACAAGA
*
26296094 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGA
1 TCTTCGATCCACTTCACCACCAATATAGGAAGACAAGA
26296131 TCT
1 TCT
26296134 GCTATTTTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 23 0.64
38 13 0.36
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (38 bp):
TCTTCGATCCACTTCACCACCAATATAGGAAGACAAGA
Found at i:26297023 original size:25 final size:26
Alignment explanation
Indices: 26296985--26297033 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26296975 GTGTCTTGAA
26296985 AAGAAAAAGATATT-CAAGAACAATG
1 AAGAAAAAGATATTACAAGAACAATG
26297010 AAGAATAAAG-TATTACAAGAACAA
1 AAGAA-AAAGATATTACAAGAACAA
26297034 ATATATGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.16
Consensus pattern (26 bp):
AAGAAAAAGATATTACAAGAACAATG
Found at i:26315751 original size:19 final size:20
Alignment explanation
Indices: 26315727--26315766 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
26315717 ACTAAGTCGA
26315727 GAATTTATATGT-T-TAAATT
1 GAATTT-TATGTATGTAAATT
26315746 GAATTTTATGTATGTAAATT
1 GAATTTTATGTATGTAAATT
26315766 G
1 G
26315767 TGTAATTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 7 0.37
20 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (20 bp):
GAATTTTATGTATGTAAATT
Found at i:26316076 original size:25 final size:25
Alignment explanation
Indices: 26316048--26316157 Score: 82
Period size: 25 Copynumber: 4.4 Consensus size: 25
26316038 CTTATGAGTG
26316048 TCCCGA-TATATGGCTCTTTGGAGCT
1 TCCCGATTA-ATGGCTCTTTGGAGCT
* *
26316073 TCCCGATTAAAGGCTCTTTCATGAGCT
1 TCCCGATTAATGGCTCTTT--GGAGCT
* **
26316100 TCCTGATTAATGGCTCTCCGGAGCT
1 TCCCGATTAATGGCTCTTTGGAGCT
* * * *
26316125 TCTCGA-TATTGGCTCGCTT-GAACT
1 TCCCGATTAATGGCTC-TTTGGAGCT
26316149 TCCCGATTA
1 TCCCGATTA
26316158 TGACTTTTAT
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
24 17 0.26
25 26 0.40
26 2 0.03
27 20 0.31
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTTGGAGCT
Found at i:26316194 original size:25 final size:25
Alignment explanation
Indices: 26316166--26316213 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26316156 TATGACTTTT
* *
26316166 ATGAGCTTCTTGTTACATGGCTCAC
1 ATGAGCTTCCTATTACATGGCTCAC
*
26316191 ATGAGCTTCCTATTATATGGCTC
1 ATGAGCTTCCTATTACATGGCTC
26316214 GAAAGAGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
ATGAGCTTCCTATTACATGGCTCAC
Found at i:26318554 original size:20 final size:20
Alignment explanation
Indices: 26318531--26318574 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
26318521 CCATTAAATA
* *
26318531 TTTATTTATAAGATTATTAT
1 TTTATTTACAAAATTATTAT
26318551 TTTATTTACAAAATTATTAT
1 TTTATTTACAAAATTATTAT
26318571 TTTA
1 TTTA
26318575 ATAAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTATTTACAAAATTATTAT
Found at i:26326383 original size:21 final size:21
Alignment explanation
Indices: 26326358--26326405 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
26326348 GATGTAAATA
*
26326358 AACCTAGCTATAGTAATAACT
1 AACCTAGCTATAATAATAACT
26326379 AACCTAGCTATAATAATAACT
1 AACCTAGCTATAATAATAACT
26326400 AACCTA
1 AACCTA
26326406 ACTAACTACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.27
Consensus pattern (21 bp):
AACCTAGCTATAATAATAACT
Found at i:26327734 original size:30 final size:30
Alignment explanation
Indices: 26327656--26327739 Score: 100
Period size: 29 Copynumber: 2.8 Consensus size: 30
26327646 GGGTAACCTC
**
26327656 GATATAATGTCAACTTGTGTGAGCAACTTT
1 GATATAATGTCAACTTGTGTGAGCAACCCT
*
26327686 GTTA-AATGT-AAGCTTGTGTGAGCAACCCT
1 GATATAATGTCAA-CTTGTGTGAGCAACCCT
* *
26327715 GATATATTGTCAACTTGTGTAAGCA
1 GATATAATGTCAACTTGTGTGAGCA
26327740 TTATATTCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 23 0.51
30 18 0.40
31 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (30 bp):
GATATAATGTCAACTTGTGTGAGCAACCCT
Found at i:26353402 original size:5 final size:5
Alignment explanation
Indices: 26353394--26353535 Score: 284
Period size: 5 Copynumber: 28.4 Consensus size: 5
26353384 TCATTTAGTT
26353394 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
26353444 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
26353494 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
26353536 TTCATTTTCG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 137 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:26353567 original size:6 final size:6
Alignment explanation
Indices: 26353558--26353606 Score: 71
Period size: 6 Copynumber: 7.8 Consensus size: 6
26353548 TTCATTTTCA
*
26353558 TTTTTG TTTTTG TTTTTG CTTTTTTG TTTTTG CTTTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG --TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
26353607 TTATTTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 33 0.85
8 6 0.15
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (6 bp):
TTTTTG
Found at i:26353573 original size:18 final size:19
Alignment explanation
Indices: 26353534--26353606 Score: 71
Period size: 18 Copynumber: 3.9 Consensus size: 19
26353524 TTATATTATA
*
26353534 TTTTCATTTTCG-TTTT-C
1 TTTTCATTTTTGTTTTTGC
*
26353551 ATTTTCATTTTTGTTTTTGT
1 -TTTTCATTTTTGTTTTTGC
*
26353571 TTTTGCTTTTTTGTTTTTGC
1 TTTT-CATTTTTGTTTTTGC
*
26353591 TTTT-GTTTTTGTTTTT
1 TTTTCATTTTTGTTTTT
26353607 TTATTTCATT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
18 22 0.47
19 8 0.17
20 17 0.36
ACGTcount: A:0.04, C:0.08, G:0.11, T:0.77
Consensus pattern (19 bp):
TTTTCATTTTTGTTTTTGC
Found at i:26353583 original size:14 final size:14
Alignment explanation
Indices: 26353564--26353607 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
26353554 TTCATTTTTG
26353564 TTTTTGTTTTTGCT
1 TTTTTGTTTTTGCT
26353578 TTTTTGTTTTTGC-
1 TTTTTGTTTTTGCT
26353591 -TTTTGTTTTTG-T
1 TTTTTGTTTTTGCT
26353603 TTTTT
1 TTTTT
26353608 TATTTCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.39
13 4 0.14
14 13 0.46
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.82
Consensus pattern (14 bp):
TTTTTGTTTTTGCT
Found at i:26353583 original size:20 final size:18
Alignment explanation
Indices: 26353558--26353606 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 18
26353548 TTCATTTTCA
*
26353558 TTTTTGTTTTTGTTTTTG
1 TTTTTGTTTTTGCTTTTG
26353576 CTTTTTTGTTTTTGCTTTTG
1 --TTTTTGTTTTTGCTTTTG
26353596 TTTTTGTTTTT
1 TTTTTGTTTTT
26353607 TTATTTCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 11 0.39
20 17 0.61
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (18 bp):
TTTTTGTTTTTGCTTTTG
Found at i:26353588 original size:26 final size:26
Alignment explanation
Indices: 26353558--26353608 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26353548 TTCATTTTCA
*
26353558 TTTTTGTTTTTGTTTTTGCTTTTTTG
1 TTTTTGCTTTTGTTTTTGCTTTTTTG
*
26353584 TTTTTGCTTTTGTTTTTGTTTTTTT
1 TTTTTGCTTTTGTTTTTGCTTTTTT
26353609 ATTTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (26 bp):
TTTTTGCTTTTGTTTTTGCTTTTTTG
Found at i:26366080 original size:23 final size:21
Alignment explanation
Indices: 26366049--26366104 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
26366039 TATACTAAGG
*
26366049 TTAAA-TTTAATTAAACTTAA
1 TTAAACTTTAATCAAACTTAA
**
26366069 TTAATTACTTTAATCATTCTTAA
1 TTAA--ACTTTAATCAAACTTAA
26366092 TTAAACTTTAATC
1 TTAAACTTTAATC
26366105 CTTAATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.13
21 9 0.30
22 1 0.03
23 16 0.53
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAACTTTAATCAAACTTAA
Found at i:26366101 original size:21 final size:22
Alignment explanation
Indices: 26366063--26366118 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
26366053 ATTTAATTAA
26366063 ACTTAATTAATTACTTTAATCATT
1 ACTTAATTAA--ACTTTAATCATT
*
26366087 -CTTAATTAAACTTTAATCCTT
1 ACTTAATTAAACTTTAATCATT
*
26366108 AATTAATTAAA
1 ACTTAATTAAA
26366119 TCTAATGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 11 0.38
22 9 0.31
23 9 0.31
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.46
Consensus pattern (22 bp):
ACTTAATTAAACTTTAATCATT
Found at i:26366895 original size:26 final size:27
Alignment explanation
Indices: 26366862--26366919 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
26366852 TTCAAAATAA
*
26366862 TTTTC-AAATTTTGA-AAGAAATAAATT
1 TTTTCAAAATTTT-ATAAAAAATAAATT
*
26366888 TTTTCAAAATTTTATAAAAAATTAATT
1 TTTTCAAAATTTTATAAAAAATAAATT
26366915 TTTTC
1 TTTTC
26366920 TATAAAATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTTCAAAATTTTATAAAAAATAAATT
Found at i:26366954 original size:21 final size:21
Alignment explanation
Indices: 26366900--26366956 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
26366890 TTCAAAATTT
* *
26366900 TATAAAAA-ATTAATTTTTTC
1 TATAAAAATATTAAATTTCTC
**
26366920 TAT-AAAATCCTAAATTTCTC
1 TATAAAAATATTAAATTTCTC
*
26366940 TATAAAAATGTTAAATT
1 TATAAAAATATTAAATT
26366957 ATCAAATCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAAAAATATTAAATTTCTC
Found at i:26372731 original size:10 final size:9
Alignment explanation
Indices: 26372698--26372730 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
26372688 CCATTTTGAT
26372698 ATTTTGGTAA
1 ATTTTGGT-A
26372708 ATTTTGGTA
1 ATTTTGGTA
26372717 ATTTTGGTA
1 ATTTTGGTA
26372726 ATTTT
1 ATTTT
26372731 TAATAGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (9 bp):
ATTTTGGTA
Done.