Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 93 of 141
Found at i:26372740 original size:19 final size:19
Alignment explanation
Indices: 26372698--26372743 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26372688 CCATTTTGAT
**
26372698 ATTTTGGTAAATTTTGGTA
1 ATTTTGGTAAATTTTAATA
*
26372717 ATTTTGGTAATTTTTAATA
1 ATTTTGGTAAATTTTAATA
*
26372736 GTTTTGGT
1 ATTTTGGT
26372744 GTATTGTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.57
Consensus pattern (19 bp):
ATTTTGGTAAATTTTAATA
Found at i:26375725 original size:15 final size:15
Alignment explanation
Indices: 26375705--26375737 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26375695 ACAATCCACT
26375705 TTACTATGGTCTTTA
1 TTACTATGGTCTTTA
*
26375720 TTACTATGTTCTTTA
1 TTACTATGGTCTTTA
26375735 TTA
1 TTA
26375738 GTATATTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (15 bp):
TTACTATGGTCTTTA
Found at i:26377105 original size:30 final size:28
Alignment explanation
Indices: 26377071--26377126 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 28
26377061 TTTATTAAAA
26377071 TTTTA-AATATAGATAATGTATATTTTTTAT
1 TTTTATAATATA-AT-AT-TATATTTTTTAT
*
26377101 TTTTATATTATAATATTATATTTTTT
1 TTTTATAATATAATATTATATTTTTT
26377127 GAAGACATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 10 0.42
29 2 0.08
30 7 0.29
31 5 0.21
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (28 bp):
TTTTATAATATAATATTATATTTTTTAT
Found at i:26384433 original size:35 final size:35
Alignment explanation
Indices: 26384392--26384504 Score: 90
Period size: 35 Copynumber: 3.2 Consensus size: 35
26384382 AAATTCTTTT
26384392 AAAATATTGCATTAAATATTTATATTATTATTTAA
1 AAAATATTGCATTAAATATTTATATTATTATTTAA
** * ** * *
26384427 AAAATATTATTATTAAAAAATGCACTA-CA-AACTTT--
1 AAAATATT-GCATT-AAATATTTA-TATTATTA-TTTAA
*
26384462 AAAATATTGCATTAATTATTTATATTATTATTTAA
1 AAAATATTGCATTAAATATTTATATTATTATTTAA
26384497 AAAATATT
1 AAAATATT
26384505 ATTATTAAAA
Statistics
Matches: 55, Mismatches: 15, Indels: 16
0.64 0.17 0.19
Matches are distributed among these distances:
32 2 0.04
33 9 0.16
34 4 0.07
35 24 0.44
36 4 0.07
37 10 0.18
38 2 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (35 bp):
AAAATATTGCATTAAATATTTATATTATTATTTAA
Found at i:26384436 original size:14 final size:16
Alignment explanation
Indices: 26384413--26384447 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
26384403 TTAAATATTT
26384413 ATATTATTATTTAAAAA
1 ATATTATTA-TTAAAAA
26384430 ATATTATTATTAAAAA
1 ATATTATTATTAAAAA
26384446 AT
1 AT
26384448 GCACTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATTATTATTAAAAA
Found at i:26384506 original size:14 final size:16
Alignment explanation
Indices: 26384483--26384517 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
26384473 TTAATTATTT
26384483 ATATTATTATTTAAAAA
1 ATATTATTA-TTAAAAA
26384500 ATATTATTATTAAAAA
1 ATATTATTATTAAAAA
26384516 AT
1 AT
26384518 GCACTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATTATTATTAAAAA
Found at i:26384539 original size:70 final size:70
Alignment explanation
Indices: 26384389--26384530 Score: 275
Period size: 70 Copynumber: 2.0 Consensus size: 70
26384379 ACTAAATTCT
26384389 TTTAAAATATTGCATTAAATATTTATATTATTATTTAAAAAATATTATTATTAAAAAATGCACTA
1 TTTAAAATATTGCATTAAATATTTATATTATTATTTAAAAAATATTATTATTAAAAAATGCACTA
26384454 CAAAC
66 CAAAC
*
26384459 TTTAAAATATTGCATTAATTATTTATATTATTATTTAAAAAATATTATTATTAAAAAATGCACTA
1 TTTAAAATATTGCATTAAATATTTATATTATTATTTAAAAAATATTATTATTAAAAAATGCACTA
26384524 CAAAC
66 CAAAC
26384529 TT
1 TT
26384531 CTATATATTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (70 bp):
TTTAAAATATTGCATTAAATATTTATATTATTATTTAAAAAATATTATTATTAAAAAATGCACTA
CAAAC
Found at i:26388133 original size:24 final size:25
Alignment explanation
Indices: 26388106--26388152 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
26388096 ATTGTGCCAT
*
26388106 CTTATGTTGCATGTTT-TGAAATGG
1 CTTATGTGGCATGTTTGTGAAATGG
*
26388130 CTTATGTGGTATGTTTGTGAAAT
1 CTTATGTGGCATGTTTGTGAAAT
26388153 CTTGAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.47
Consensus pattern (25 bp):
CTTATGTGGCATGTTTGTGAAATGG
Found at i:26389012 original size:2 final size:2
Alignment explanation
Indices: 26389005--26389037 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26388995 TGCTAGTTCT
26389005 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
26389038 CTGTGAGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:26389891 original size:48 final size:48
Alignment explanation
Indices: 26389820--26389959 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 48
26389810 AGGAAGGATA
* ** * *
26389820 TGAAAAGAATAAGTTAATATGACTCCGTATATGTTATATGTTATGTAT
1 TGAAAAGAGTAAGCAAATATGACTCTGTATGTGTTATATGTTATGTAT
* * * *
26389868 TGAAAAGGGTAAGCAAATATGACTTTGTGTGTGTGATA---TATGT-T
1 TGAAAAGAGTAAGCAAATATGACTCTGTATGTGTTATATGTTATGTAT
* ** *
26389912 TGGAAAGAGTAAGTTAGTATGACTCTGTATGTGTTATATGTTATGTAT
1 TGAAAAGAGTAAGCAAATATGACTCTGTATGTGTTATATGTTATGTAT
26389960 AATTGCTAAT
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
44 31 0.44
45 5 0.07
47 5 0.07
48 30 0.42
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (48 bp):
TGAAAAGAGTAAGCAAATATGACTCTGTATGTGTTATATGTTATGTAT
Found at i:26395038 original size:23 final size:23
Alignment explanation
Indices: 26395008--26395054 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
26394998 TACTTTCTTT
*
26395008 CTGTAGTAATTTTCGGGGTATTA
1 CTGTAGTAATTTTCGGGATATTA
26395031 CTGTAGTAATTTTCGGGATATTA
1 CTGTAGTAATTTTCGGGATATTA
26395054 C
1 C
26395055 ACTTCTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (23 bp):
CTGTAGTAATTTTCGGGATATTA
Found at i:26397552 original size:17 final size:17
Alignment explanation
Indices: 26397530--26397567 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26397520 ATTTAATTAA
*
26397530 TCAATTCAATTAGTTTT-
1 TCAATTAAATTA-TTTTC
26397547 TCAATTAAATTATTTTC
1 TCAATTAAATTATTTTC
26397564 TCAA
1 TCAA
26397568 CCCAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (17 bp):
TCAATTAAATTATTTTC
Found at i:26406163 original size:29 final size:29
Alignment explanation
Indices: 26406130--26406227 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 29
26406120 TCATTTAGCT
26406130 GAGATAACCACAAAGGCATCCATT-TAACCA
1 GAGATAACCACAAAGGCATCC-TTATAA-CA
** *
26406160 -AGATCTCCACAAAGGCTTCCTTATAACA
1 GAGATAACCACAAAGGCATCCTTATAACA
* *
26406188 GAGATAACCATAAAGGCTTCCTT-T--CA
1 GAGATAACCACAAAGGCATCCTTATAACA
*
26406214 GAGATAGCCACAAA
1 GAGATAACCACAAA
26406228 TTCATCCACT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
26 14 0.24
28 5 0.09
29 39 0.67
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.20
Consensus pattern (29 bp):
GAGATAACCACAAAGGCATCCTTATAACA
Found at i:26413307 original size:19 final size:19
Alignment explanation
Indices: 26413283--26413320 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26413273 TTAGTTATAG
*
26413283 TACGAAGAATATAAAATAA
1 TACGAAAAATATAAAATAA
26413302 TACGAAAAATATAAAATAA
1 TACGAAAAATATAAAATAA
26413321 CGGATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (19 bp):
TACGAAAAATATAAAATAA
Found at i:26425829 original size:77 final size:77
Alignment explanation
Indices: 26425702--26426012 Score: 604
Period size: 77 Copynumber: 4.0 Consensus size: 77
26425692 GGCACATAGT
26425702 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
1 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
26425767 GACTCCATTCTG
66 GACTCCATTCTG
26425779 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
1 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
26425844 GACTCCATTCTG
66 GACTCCATTCTG
26425856 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
1 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
26425921 GACTCCATTCTG
66 GACTCCATTCTG
* *
26425933 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAATCTTTAATGGCACATAAAGTGGATG
1 GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
26425998 GACTCCATTCTG
66 GACTCCATTCTG
26426010 GAT
1 GAT
26426013 ATGGGAAACA
Statistics
Matches: 232, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 232 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (77 bp):
GATCAAGAAGTGTGTCTGGTTAGTAAGGATTCACTCAAAAGCTTTAATGGCACATAAAGTGGGTG
GACTCCATTCTG
Found at i:26427689 original size:84 final size:84
Alignment explanation
Indices: 26427504--26427777 Score: 319
Period size: 84 Copynumber: 3.3 Consensus size: 84
26427494 AACACCAATT
* * * * * * *
26427504 TCTGTAAAAGTAAGCCTTTGTAGC--TGTCTATTAAAGGAAGTCATTGTGGTGATC--TATTAAA
1 TCTGTTAAAGGAAGCCTTTGTGGCAATCTCTATTAAAGGAAGCCTTTGTGGTGATCTTTGTTAAA
*
26427565 GGAA-TCCCTTGTGGCGATC
66 GGAAGT-CTTTGTGGCGATC
* *
26427584 TCTGTTAAAGGAAGCCCTTGTGGCGATCTCTATTAAAGGAAGCCTTTGTGGTGATCTTTGTTAAA
1 TCTGTTAAAGGAAGCCTTTGTGGCAATCTCTATTAAAGGAAGCCTTTGTGGTGATCTTTGTTAAA
* * * *
26427649 GGAAGTGTTTATGGCTATT
66 GGAAGTCTTTGTGGCGATC
* *
26427668 TCTGTTAAATGAAGCTTTTGTGGCAATCTCTATTAAAGGAAGCCTTT-TGGCT-ATCTTTGTTAA
1 TCTGTTAAAGGAAGCCTTTGTGGCAATCTCTATTAAAGGAAGCCTTTGTGG-TGATCTTTGTTAA
*
26427731 GGGAAGTCTTTGTGGCGATC
65 AGGAAGTCTTTGTGGCGATC
*
26427751 TCTGTTAAAGGAAGCCTTTGTGACAAT
1 TCTGTTAAAGGAAGCCTTTGTGGCAAT
26427778 ATCTGTCAAA
Statistics
Matches: 163, Mismatches: 25, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
80 20 0.12
82 27 0.17
83 53 0.33
84 62 0.38
85 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.36
Consensus pattern (84 bp):
TCTGTTAAAGGAAGCCTTTGTGGCAATCTCTATTAAAGGAAGCCTTTGTGGTGATCTTTGTTAAA
GGAAGTCTTTGTGGCGATC
Found at i:26427783 original size:28 final size:28
Alignment explanation
Indices: 26427504--26427772 Score: 251
Period size: 28 Copynumber: 9.8 Consensus size: 28
26427494 AACACCAATT
* * * *
26427504 TCTGTAAAAGTAAGCCTTTGTAGC--TG
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* * * *
26427530 TCTATTAAAGGAAGTCATTGTGGTGA--
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* * *
26427556 TCTATTAAAGGAATCCCTTGTGGCGATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
*
26427584 TCTGTTAAAGGAAGCCCTTGTGGCGATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* *
26427612 TCTATTAAAGGAAGCCTTTGTGGTGATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* ** * * *
26427640 TTTGTTAAAGGAAGTGTTTATGGCTATT
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* * *
26427668 TCTGTTAAATGAAGCTTTTGTGGCAATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* *
26427696 TCTATTAAAGGAAGCCTTT-TGGCTATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
* * *
26427723 TTTGTTAAGGGAAGTCTTTGTGGCGATC
1 TCTGTTAAAGGAAGCCTTTGTGGCGATC
26427751 TCTGTTAAAGGAAGCCTTTGTG
1 TCTGTTAAAGGAAGCCTTTGTG
26427773 ACAATATCTG
Statistics
Matches: 195, Mismatches: 43, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
26 39 0.20
27 22 0.11
28 134 0.69
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (28 bp):
TCTGTTAAAGGAAGCCTTTGTGGCGATC
Found at i:26427783 original size:111 final size:112
Alignment explanation
Indices: 26427573--26427801 Score: 271
Period size: 111 Copynumber: 2.1 Consensus size: 112
26427563 AAGGAATCCC
* * *
26427573 TTGTGGCGATCTCTGTTAAAGGAAGCCCTTGTGGCGATCTCTATTAAAGGAAGCCTTTGTGGTGA
1 TTGTGGCAATCTCTATTAAAGGAAGCCCTTGTGGCGATCTCTATTAAAGGAAGCCTTTGTGGCGA
* ** * * * * *
26427638 TCTTTGTTAAAGGAAGTGTTTATGGCTATTTCTGTTAAATGAAGCTT
66 TCTCTGTTAAAGGAAGCCTTTATGACAATATCTGTCAAAAGAAGCTT
* * * * * *
26427685 TTGTGGCAATCTCTATTAAAGGAAG-CCTTTTGGCTATCTTTGTTAAGGGAAGTCTTTGTGGCGA
1 TTGTGGCAATCTCTATTAAAGGAAGCCCTTGTGGCGATCTCTATTAAAGGAAGCCTTTGTGGCGA
* *
26427749 TCTCTGTTAAAGGAAGCCTTTGTGACAATATCTGTCAAAAGACGCTT
66 TCTCTGTTAAAGGAAGCCTTTATGACAATATCTGTCAAAAGAAGCTT
*
26427796 TCGTGG
1 TTGTGG
26427802 TGAGACTCTA
Statistics
Matches: 97, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
111 74 0.76
112 23 0.24
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (112 bp):
TTGTGGCAATCTCTATTAAAGGAAGCCCTTGTGGCGATCTCTATTAAAGGAAGCCTTTGTGGCGA
TCTCTGTTAAAGGAAGCCTTTATGACAATATCTGTCAAAAGAAGCTT
Found at i:26431155 original size:25 final size:24
Alignment explanation
Indices: 26431127--26431185 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
26431117 TCCCCTAGAA
*
26431127 GCCTTAGTGGCTAGTATCCTATGAT
1 GCCTTTGTGGCT-GTATCCTATGAT
*
26431152 GCCTTTGTGG-TGTATGCTATGAT
1 GCCTTTGTGGCTGTATCCTATGAT
26431175 GCCTTTGTGGC
1 GCCTTTGTGGC
26431186 ATATTCTGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 21 0.68
24 1 0.03
25 9 0.29
ACGTcount: A:0.14, C:0.19, G:0.29, T:0.39
Consensus pattern (24 bp):
GCCTTTGTGGCTGTATCCTATGAT
Found at i:26433086 original size:3 final size:3
Alignment explanation
Indices: 26433078--26433131 Score: 90
Period size: 3 Copynumber: 17.7 Consensus size: 3
26433068 TATTTTCTCC
*
26433078 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
26433124 TTA TTA TT
1 TTA TTA TT
26433132 TTCATGTACG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26433805 original size:15 final size:15
Alignment explanation
Indices: 26433766--26433807 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
26433756 TATATTTTAA
*
26433766 ATTAAAGTATTTATT
1 ATTATAGTATTTATT
* *
26433781 ATTGTTGTATTTATT
1 ATTATAGTATTTATT
26433796 ATTATAGTATTT
1 ATTATAGTATTT
26433808 GTATGTATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (15 bp):
ATTATAGTATTTATT
Found at i:26434832 original size:58 final size:58
Alignment explanation
Indices: 26434742--26434858 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
26434732 ACCCTTTTAA
* * *
26434742 GTGGGAGTGAGAAGGTATGCCTTCGTGAGGTTTTTACCTTCGTGTAGGATAGTGGATT
1 GTGGGAGTGAGAAGCTATGCCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATT
*
26434800 GTGGGAGTGAGAAGCTATGCCTTCGTGAGGTTTTCACCTCCGTGTAGGGTAGTGGATT
1 GTGGGAGTGAGAAGCTATGCCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATT
26434858 G
1 G
26434859 CTTCCGGGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.18, C:0.13, G:0.37, T:0.32
Consensus pattern (58 bp):
GTGGGAGTGAGAAGCTATGCCTTCGTGAGGTTTTCACCTCCGTGTAGGATAGTGGATT
Found at i:26439620 original size:132 final size:131
Alignment explanation
Indices: 26439447--26439810 Score: 595
Period size: 132 Copynumber: 2.8 Consensus size: 131
26439437 ACAGCAAAGC
*
26439447 AGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-TCT
26439512 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTAGA
65 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTAGA
26439577 GT
130 GT
*
26439579 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAACTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-TCT
* * *
26439644 ACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCGGATCTTATCTCCCTAAGCAGTAGTTGA
65 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTAGA
26439709 GT
130 GT
* *
26439711 AGATCGAAGATGGTGGATTTTACCTCTCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATCAT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATC-T
* * *
26439776 A-TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
65 ACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
26439811 GTAAGTTTTA
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
131 3 0.01
132 214 0.99
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (131 bp):
AGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATCTA
CTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAG
T
Found at i:26441004 original size:3 final size:3
Alignment explanation
Indices: 26440996--26441046 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
26440986 TATTTTCTCC
*
26440996 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
26441042 TTA TT
1 TTA TT
26441047 TTCATGTACG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26441313 original size:19 final size:19
Alignment explanation
Indices: 26441289--26441333 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26441279 ATACCCTTTT
26441289 ATATTTTATT-TTATTATAA
1 ATATTTT-TTATTATTATAA
* *
26441308 ATATTTTTTATTATTCTAT
1 ATATTTTTTATTATTATAA
26441327 ATATTTT
1 ATATTTT
26441334 CCATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
ATATTTTTTATTATTATAA
Found at i:26446059 original size:22 final size:23
Alignment explanation
Indices: 26446031--26446075 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26446021 AAACAATCTT
26446031 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
26446053 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
26446076 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:26449186 original size:22 final size:22
Alignment explanation
Indices: 26449147--26449195 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
26449137 AAATAATAGT
26449147 TTTAAAATGTATTAATTAAATA
1 TTTAAAATGTATTAATTAAATA
26449169 TATTAAATAT-TATT-ATTAAATA
1 T-TTAAA-ATGTATTAATTAAATA
26449191 TTTAA
1 TTTAA
26449196 TCCAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.16
22 10 0.40
23 9 0.36
24 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTAAAATGTATTAATTAAATA
Found at i:26449515 original size:23 final size:23
Alignment explanation
Indices: 26449489--26449534 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
26449479 ATTATTTAAA
**
26449489 TAATTTTTTTTAATTTTTATATT
1 TAATTTTTTTTAAAATTTATATT
26449512 TAATTTTTTTTAAAATTTATATT
1 TAATTTTTTTTAAAATTTATATT
26449535 ATTTATTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
TAATTTTTTTTAAAATTTATATT
Found at i:26453801 original size:28 final size:27
Alignment explanation
Indices: 26453742--26453803 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26453732 ATGTCATAGA
*
26453742 AATTAAAATAGGATAAAATAAATAATT
1 AATTAAAATAGGATAAAATAAAAAATT
*
26453769 AATTAATAATAGTA-AAAATAAAAATATT
1 AATTAA-AATAGGATAAAATAAAAA-ATT
*
26453797 TATTAAA
1 AATTAAA
26453804 TTAAATAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (27 bp):
AATTAAAATAGGATAAAATAAAAAATT
Found at i:26458044 original size:37 final size:37
Alignment explanation
Indices: 26457980--26458136 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
26457970 TACGTATGAT
*
26457980 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
26458016 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
26458053 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
26458096 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
26458136 C
1 C
26458137 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:26458106 original size:46 final size:46
Alignment explanation
Indices: 26458053--26458419 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
26458043 TAAGTGTAGC
* **
26458053 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
26458099 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
26458145 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
26458197 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
26458249 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
26458295 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
26458341 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
26458393 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
26458420 AGTACTCAAA
Statistics
Matches: 290, Mismatches: 18, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:26458172 original size:52 final size:52
Alignment explanation
Indices: 26458096--26458413 Score: 417
Period size: 52 Copynumber: 6.3 Consensus size: 52
26458086 TAGCTAAAGC
* *
26458096 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
26458149 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
26458201 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
26458253 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
26458299 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
26458345 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
26458397 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
26458414 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 17, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:26458361 original size:196 final size:196
Alignment explanation
Indices: 26458053--26458405 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
26458043 TAAGTGTAGC
* * * * * *
26458053 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
26458118 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
26458183 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
26458248 T
196 T
*
26458249 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
26458314 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
26458379 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
26458406 ATCACTTGAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:26458409 original size:98 final size:97
Alignment explanation
Indices: 26458053--26458419 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
26458043 TAAGTGTAGC
* * * *
26458053 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
26458118 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
26458152 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
26458217 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
26458256 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
26458316 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
26458348 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
26458413 GATCAGA
65 GATCAGA
26458420 AGTACTCAAA
Statistics
Matches: 238, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 148 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:26462943 original size:14 final size:14
Alignment explanation
Indices: 26462924--26462957 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26462914 TTGTTTCACT
26462924 GAAAATGACTTCTA
1 GAAAATGACTTCTA
*
26462938 GAAAATGATTTCTA
1 GAAAATGACTTCTA
*
26462952 AAAAAT
1 GAAAAT
26462958 AATTTACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (14 bp):
GAAAATGACTTCTA
Found at i:26463533 original size:16 final size:16
Alignment explanation
Indices: 26463502--26463538 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
26463492 ATGTGAATAA
26463502 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
26463518 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
26463534 TATTA
1 TATTA
26463539 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:26463590 original size:22 final size:22
Alignment explanation
Indices: 26463550--26463605 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
26463540 AATAAAATTG
*
26463550 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
26463570 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
26463592 TATTAATAATTTAT
1 AAATAATAAATTAT
26463606 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:26463675 original size:9 final size:9
Alignment explanation
Indices: 26463661--26463689 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
26463651 TGAAAAATAT
26463661 AATATTTTA
1 AATATTTTA
26463670 AATATTTTA
1 AATATTTTA
26463679 AATATTTTA
1 AATATTTTA
26463688 AA
1 AA
26463690 AATAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATATTTTA
Found at i:26468595 original size:111 final size:110
Alignment explanation
Indices: 26468395--26468700 Score: 458
Period size: 111 Copynumber: 2.8 Consensus size: 110
26468385 AAGGAAAATG
* * *
26468395 TTTTAAAATAAGGCAATATTTCGCGTTTGGGAAATTCGAGAAAACATTCCCTAAGGTGCTGGGTG
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
** * *
26468460 TTGATTTTTCTCGTCCAACCAAATGGCTTAATATCCTTTTAAAAC
66 TTGATTTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
26468505 TTTTAAGAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
1 TTTTAA-AATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
26468570 GTTGATTTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
65 GTTGATTTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
* * * * *
26468616 TTTCAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
26468679 TTGA--TTTCTCGTTTAACCAAAT
66 TTGATTTTTCTCGTTAAACCAAAT
26468701 TGTCAAATAT
Statistics
Matches: 182, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
106 17 0.09
108 25 0.14
109 11 0.06
110 27 0.15
111 102 0.56
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (110 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
TTGATTTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
Found at i:26480647 original size:50 final size:50
Alignment explanation
Indices: 26480587--26481264 Score: 721
Period size: 50 Copynumber: 13.7 Consensus size: 50
26480577 GCGGTGGAAC
* * *
26480587 AGATTGAAGCTACAACAGTGGATCTTACTTCCATGATATTGCAATTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * ** *
26480637 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCATTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAAA
26480687 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAA-TAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * ** *
26480736 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCATTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAAA
26480786 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAA-TAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * ** *
26480835 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCATTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAAA
26480885 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAA-TAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * ** *
26480934 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCATTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAAA
26480984 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAA-TAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * * ** *
26481033 AGATTGAAGCTACAACAGCGGATCTTACTTCCCAGGCAATGCAATGGAAT
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * ** ** * *
26481083 AGATTGAAGCTACATCGGCAAATCACACTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
** * * * * * ** *
26481133 AGATTGAAGCTACAAC-GACAAATCTTATTTCCCAGGCGA-TACAGTGGAAC
1 AGATTGAAGCTACAACAG-CGGATCTTACTTCCCTGAC-ATTGCAATTAAAA
* * ** *
26481183 AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACATTGCAATT-AAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
* * * *
26481232 AGATTGAGGCCACAACGGCGAATCTTACTTCCC
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCC
26481265 AGGCGATGTA
Statistics
Matches: 526, Mismatches: 86, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
48 3 0.01
49 203 0.39
50 314 0.60
51 6 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
Found at i:26480776 original size:99 final size:99
Alignment explanation
Indices: 26480426--26481261 Score: 1076
Period size: 99 Copynumber: 8.4 Consensus size: 99
26480416 TAACCATAGT
* * * * * ** *
26480426 TTGCAATTTAAAAGATTGAGGCCACAAC-GACGAATCTTACTTTCTCAAGCGGTGCAGCGGAACA
1 TTGCAA-TAAAAAGATTGAAGCTACAACAG-CGGATCTTACTTTC-CTAGCATTGCAGTGGAACA
* * *
26480490 GATTGAAGCTACAACGGCGAATCTCACTTCCCTGACA
63 GATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * ** * ** *
26480527 TTGCAATCAAAAGATTGAGGCCACAAC-GACAAATCTTA-TTT-CGAGGCGGTGCGGTGGAACAG
1 TTGCAATAAAAAGATTGAAGCTACAACAG-CGGATCTTACTTTCCTA-GCATTGCAGTGGAACAG
* * *
26480589 ATTGAAGCTACAACAGTGGATCTTACTTCCATGATA
64 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
26480625 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGA
1 TTGCAA-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGA
26480690 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
65 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
26480725 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
1 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
26480790 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
66 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
26480824 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
1 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
26480889 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
66 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
26480923 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
1 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
26480988 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
66 TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
26481022 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCCAGGCAATGCAATGGAATAGA
1 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCATTGCAGTGGAACAGA
* * ** ** *
26481086 TTGAAGCTACATCGGCAAATCACACTTCCCCGACA
65 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* ** * *
26481121 TTGCAATTTAAAAGATTGAAGCTACAAC-GACAAATCTTA-TTTCCCAGGCGA-TACAGTGGAAC
1 TTGCAA-TAAAAAGATTGAAGCTACAACAG-CGGATCTTACTTTCCTA-GC-ATTGCAGTGGAAC
* * ** *
26481183 AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACA
62 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
26481221 TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTT
1 TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTT
26481262 CCCAGGCGAT
Statistics
Matches: 676, Mismatches: 47, Indels: 25
0.90 0.06 0.03
Matches are distributed among these distances:
97 2 0.00
98 56 0.08
99 435 0.64
100 174 0.26
101 9 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (99 bp):
TTGCAATAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGCAGTGGAACAGAT
TGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:26482331 original size:59 final size:59
Alignment explanation
Indices: 26482239--26482355 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
26482229 GTCGCCGGAG
*
26482239 TCCTTCGGGTAATCGAAAATGGACGGGGATGGCGGCTTTTGGGGGTTTTTCTCTCGGCA
1 TCCTTCGGGTAACCGAAAATGGACGGGGATGGCGGCTTTTGGGGGTTTTTCTCTCGGCA
26482298 TCCTTCGGGTAACCGAAAATGGACGGGGATGGCGGCTTTTGGGGGTTTTTCTCTCGGC
1 TCCTTCGGGTAACCGAAAATGGACGGGGATGGCGGCTTTTGGGGGTTTTTCTCTCGGC
26482356 TTTGGGGATA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.15, C:0.20, G:0.36, T:0.30
Consensus pattern (59 bp):
TCCTTCGGGTAACCGAAAATGGACGGGGATGGCGGCTTTTGGGGGTTTTTCTCTCGGCA
Found at i:26483164 original size:27 final size:25
Alignment explanation
Indices: 26483133--26483185 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
26483123 TACACTTTTT
*
26483133 TTTTACACTTGTACCCATTTATATATA
1 TTTTACACTT-TA-CAATTTATATATA
* *
26483160 TTTTATACTTTATAATTTATATATA
1 TTTTACACTTTACAATTTATATATA
26483185 T
1 T
26483186 ATACATATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 12 0.52
26 2 0.09
27 9 0.39
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.55
Consensus pattern (25 bp):
TTTTACACTTTACAATTTATATATA
Found at i:26483768 original size:111 final size:109
Alignment explanation
Indices: 26483568--26483873 Score: 456
Period size: 111 Copynumber: 2.8 Consensus size: 109
26483558 AAGGAAAATG
* *
26483568 TTTTAAAATAAGGCAATATTTCGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
** * *
26483633 TTGATTTTTCTCGTCCAACCAAATGGCTTAATATCCTTTTAAAAC
66 TTGA-TTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
26483678 TTTTAAGAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
1 TTTTAA-AATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
26483743 GTTGATTTTCCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
65 GTTGATTTT-CTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
* * * * *
26483789 TTTCAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
26483852 TTGA-TTTCTCGTTTAACCAAAT
66 TTGATTTTCTCGTTAAACCAAAT
26483874 TGTCAAATAT
Statistics
Matches: 182, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
106 14 0.08
107 3 0.02
108 25 0.14
109 11 0.06
110 31 0.17
111 98 0.54
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
TTGATTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
Found at i:26488165 original size:16 final size:16
Alignment explanation
Indices: 26488140--26488173 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26488130 TATGTTTTGC
* *
26488140 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
26488156 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
26488172 TT
1 TT
26488174 CATCCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:26493687 original size:16 final size:18
Alignment explanation
Indices: 26493667--26493706 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
26493657 ACGCAAGACA
*
26493667 AAGAAGGAGT-GAGATAG
1 AAGAAGGAGTCGAGAAAG
26493684 -AGAA-GAGTCGAGAAAG
1 AAGAAGGAGTCGAGAAAG
26493700 AAGAAGG
1 AAGAAGG
26493707 GCACGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 5
0.76 0.04 0.20
Matches are distributed among these distances:
15 4 0.21
16 10 0.53
17 4 0.21
18 1 0.05
ACGTcount: A:0.50, C:0.03, G:0.40, T:0.07
Consensus pattern (18 bp):
AAGAAGGAGTCGAGAAAG
Found at i:26498370 original size:12 final size:12
Alignment explanation
Indices: 26498353--26498377 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26498343 AAGTTGAGAC
26498353 TATCCCTTCAGA
1 TATCCCTTCAGA
26498365 TATCCCTTCAGA
1 TATCCCTTCAGA
26498377 T
1 T
26498378 TTTGTGGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:26499120 original size:132 final size:132
Alignment explanation
Indices: 26498879--26499563 Score: 1004
Period size: 132 Copynumber: 5.2 Consensus size: 132
26498869 GAATAAACCA
* * * * *
26498879 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG-A---TA-G
1 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
**** *
26498939 TGGAGAAGTAGTAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGTAGTGGAG
66 TTCCCAAG-A-TAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAG
26499004 TAGG
129 TAGG
* *
26499008 TTGAAGATTGCAGATTCTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAAATGGTGAATCTTATC
1 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
*
26499073 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAACA-CTAGTGGAGT
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGC-AGTGGAGT
26499137 AGG
130 AGG
*
26499140 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGTGAATCTTATC
1 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
* * * *
26499205 TTCCCAAGATAATGAAGAAGCAAATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTAGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
26499270 GG
131 GG
* * *
26499272 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATC
1 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
* * *
26499337 TTCCCAATATAGTGGAGAAGCAGATTTAAACCATTAGTCCTTTCTCCCTGAGCAGCAGTGGAGTA
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
26499402 GG
131 GG
* *
26499404 TTGAAGATTGCAGATTCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATC
1 TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
* * *
26499469 TTCCCAAGATAGTGGAGAAGCAAATTTAAGCCATTAATCCTATCTCCCTGAGCAGCAGTGGAGTG
66 TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
26499534 GG
131 GG
* * * *
26499536 TTGAATATTGTAAATCCTGTCTCCCTAA
1 TTGAAGATTGCAGATTCTGTCTCCCTAA
26499564 TCTTCATTAC
Statistics
Matches: 505, Mismatches: 44, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
129 50 0.10
130 1 0.00
132 446 0.88
133 4 0.01
134 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAAATGGTGAATCTTATC
TTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTGAGCAGCAGTGGAGTA
GG
Found at i:26499455 original size:44 final size:44
Alignment explanation
Indices: 26498980--26499448 Score: 181
Period size: 44 Copynumber: 10.7 Consensus size: 44
26498970 GCCATTAGTC
* * *
26498980 CTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * ** *
26499024 CTATCTCCCTAAGCAGTAGTAGAGCAGA-TCAAAAATGGTGAAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* *
26499067 CTTATCTTCCC-AAG-A-TAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-TCCCTAAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGCAGATT
* * *
26499112 CTATCTCCCTGAA-CACTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** *
26499156 CTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAA-AATGGTGAAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * *
26499199 CTTATCTTCCC-AAG-A-TAATGAAGAAGCAAATTTAAGCCATT--AG-TC
1 C-TATC-TCCCTAAGCAGTAGTG--G-AGCAGATTGAAG--ATTGCAGATT
* * * * *
26499244 CTATCTCCCTGAGCAGCAGTAGAGTAGGTTGAAGATTGCAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** *
26499288 CTGTCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGGTGAAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * *
26499331 CTTATCTTCCC-AA-TA-TAGTGGAGAAGCAGATTTAAACCATT--AG-TC
1 C-TATC-TCCCTAAGCAGTAGT-G-G-AGCAGA-TTGAA-GATTGCAGATT
* * * * *
26499376 CTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
26499420 CTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 CTATCTCCCTAAGCAGTAGTGGAGCAGAT
26499449 CAAAGATGGT
Statistics
Matches: 301, Mismatches: 80, Indels: 88
0.64 0.17 0.19
Matches are distributed among these distances:
41 9 0.03
42 16 0.05
43 68 0.23
44 143 0.48
45 41 0.14
46 18 0.06
47 1 0.00
48 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
Found at i:26499686 original size:24 final size:24
Alignment explanation
Indices: 26499658--26499714 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
26499648 TCATTACTAC
26499658 TATTACTATTG-TTAATAATATTGT
1 TATTA-TATTGATTAATAATATTGT
* *
26499682 TATTAT-TATGATTATTACTATTGT
1 TATTATAT-TGATTAATAATATTGT
26499706 TATTATATT
1 TATTATATT
26499715 TTTGTAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
23 3 0.11
24 23 0.82
25 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.58
Consensus pattern (24 bp):
TATTATATTGATTAATAATATTGT
Found at i:26499696 original size:12 final size:12
Alignment explanation
Indices: 26499658--26499711 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
26499648 TCATTACTAC
*
26499658 TATTACTATTGT
1 TATTATTATTGT
* *
26499670 TAATAATATTGT
1 TATTATTATTGT
26499682 TATTATTA-TGAT
1 TATTATTATTG-T
*
26499694 TATTACTATTGT
1 TATTATTATTGT
26499706 TATTAT
1 TATTAT
26499712 ATTTTTGTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
11 2 0.06
12 30 0.88
13 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.57
Consensus pattern (12 bp):
TATTATTATTGT
Found at i:26500158 original size:81 final size:81
Alignment explanation
Indices: 26500023--26500183 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 81
26500013 CATTTTATCT
* * *
26500023 GCAAGTTTTCAAGATATTCGGTGTCCAAAATTCTCGAGGAGATTGTGTCCTAACTTACTGGGCTT
1 GCAAGTTTTCAAAATATTCGGCGTCCAAAATTCTCGAGGAGATTGTGCCCTAACTTACTGGGCTT
26500088 C-AATTTTCTCCGTTGC
66 CAAATTTT-TCCGTTGC
26500104 GCAAGTTTTCAAAATATTCGGCGTCCAAAATTCTCGAGGAGATTGTGCCCTAACTTACTGGGCTT
1 GCAAGTTTTCAAAATATTCGGCGTCCAAAATTCTCGAGGAGATTGTGCCCTAACTTACTGGGCTT
26500169 CAAATTTTTCCGTTG
66 CAAATTTTTCCGTTG
26500184 AATTTAAATA
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
81 70 0.92
82 6 0.08
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (81 bp):
GCAAGTTTTCAAAATATTCGGCGTCCAAAATTCTCGAGGAGATTGTGCCCTAACTTACTGGGCTT
CAAATTTTTCCGTTGC
Found at i:26503011 original size:21 final size:21
Alignment explanation
Indices: 26502986--26503041 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
26502976 ACAAAAATTG
*
26502986 ATAAGAGTTAAACAGAAGCTC
1 ATAAGAGCTAAACAGAAGCTC
*
26503007 GTAAGAGCTAAACAGAAGCTC
1 ATAAGAGCTAAACAGAAGCTC
*
26503028 AAAAGAGCTAAACA
1 ATAAGAGCTAAACA
26503042 TAAAGTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.50, C:0.16, G:0.20, T:0.14
Consensus pattern (21 bp):
ATAAGAGCTAAACAGAAGCTC
Found at i:26511295 original size:24 final size:24
Alignment explanation
Indices: 26511268--26511319 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26511258 TTAGTAAGTC
*
26511268 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26511292 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26511316 AAAT
1 AAAT
26511320 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26513265 original size:24 final size:24
Alignment explanation
Indices: 26513238--26513289 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26513228 TTAGTAAGTC
*
26513238 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26513262 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26513286 AAAT
1 AAAT
26513290 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26516629 original size:39 final size:38
Alignment explanation
Indices: 26516573--26516672 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 38
26516563 CGAATATAAT
*
26516573 AATTATAATTATC-ATAATTATAATAATGTTTGACCGAAA
1 AATTATAATTA-CAATAATTATAATAATGTTCGACC-AAA
* * * *
26516612 AATTACAATTACAATAATTATAATATTGTTCGATCATA
1 AATTATAATTACAATAATTATAATAATGTTCGACCAAA
26516650 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
26516673 CAAGGATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
38 25 0.46
39 29 0.54
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATGTTCGACCAAA
Found at i:26527194 original size:17 final size:18
Alignment explanation
Indices: 26527160--26527194 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26527150 TGAGAGTGAA
*
26527160 AAGAAATGTGAAACAGAT
1 AAGAAATGTGAAAAAGAT
26527178 AAGAAAT-TGAAAAAGAT
1 AAGAAATGTGAAAAAGAT
26527195 GTTGAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.03, G:0.20, T:0.17
Consensus pattern (18 bp):
AAGAAATGTGAAAAAGAT
Found at i:26529219 original size:20 final size:20
Alignment explanation
Indices: 26529194--26529233 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26529184 TTAAGCCTAT
26529194 ATCAAGCATCTTTGTCTCAA
1 ATCAAGCATCTTTGTCTCAA
26529214 ATCAAGCATCTTTGTCTCAA
1 ATCAAGCATCTTTGTCTCAA
26529234 GTTCACTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCAAGCATCTTTGTCTCAA
Found at i:26530382 original size:20 final size:20
Alignment explanation
Indices: 26530339--26530392 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
26530329 ATATATTAAG
26530339 ATAAAAATATTGAAATTTAGA
1 ATAAAAATATTG-AATTTAGA
26530360 ATAAAAATATTG-ATTT-G-
1 ATAAAAATATTGAATTTAGA
26530377 ATAATAAATTATTGAA
1 ATAA-AAA-TATTGAA
26530393 AAAGGGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 4 0.13
18 4 0.13
19 9 0.30
20 1 0.03
21 12 0.40
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (20 bp):
ATAAAAATATTGAATTTAGA
Found at i:26530586 original size:5 final size:5
Alignment explanation
Indices: 26530576--26530605 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
26530566 ACCATATTTG
26530576 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
26530606 ATAAAATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:26531269 original size:27 final size:25
Alignment explanation
Indices: 26531226--26531281 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 25
26531216 ATTTAATTAA
* *
26531226 ATTTCATTTCTACTTATTTTTACTCTT
1 ATTTCATTTCTAATTATCTTTA-T-TT
26531253 ATTTCAATTTC-AATTATCTTTATTT
1 ATTTC-ATTTCTAATTATCTTTATTT
26531278 ATTT
1 ATTT
26531282 TTTACTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 6 0.23
26 1 0.04
27 14 0.54
28 5 0.19
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.62
Consensus pattern (25 bp):
ATTTCATTTCTAATTATCTTTATTT
Found at i:26535831 original size:37 final size:36
Alignment explanation
Indices: 26535779--26535851 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 36
26535769 CACCGGTTTA
* * *
26535779 CACTCTTTCTTGCATTCTTCAACCCTATTATTTTTC
1 CACTCTTTCTCGCATTCTTCAACCCCATCATTTTTC
26535815 NCACTCTTTCTCGCATTCTTCAACCCCATCATTTTTC
1 -CACTCTTTCTCGCATTCTTCAACCCCATCATTTTTC
26535852 TCAACAACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.16, C:0.34, G:0.03, T:0.45
Consensus pattern (36 bp):
CACTCTTTCTCGCATTCTTCAACCCCATCATTTTTC
Found at i:26550161 original size:67 final size:68
Alignment explanation
Indices: 26549861--26550161 Score: 382
Period size: 67 Copynumber: 4.5 Consensus size: 68
26549851 TTTGTATTTG
* * * * *
26549861 TCATAGTTGAGCTATGGTCTTACACATCATACCCCATGTTTAATATTCTCACAGACTCTCTAT-A
1 TCATAGTTGAGCTATGGTCTTACACATCATACCTCATGTTTAATGTCCTGACAGACTCTCTATGT
*
26549925 TGG
66 TGC
* * *
26549928 TCATA-TCGAGCTATGGTTTTACACATCATACAC-CATGTTTAATGTCCT-AGCAGATTCTCTAT
1 TCATAGTTGAGCTATGGTCTTACACATCATAC-CTCATGTTTAATGTCCTGA-CAGACTCTCTAT
26549990 GTTG-
64 GTTGC
*** *
26549994 TCATAACCGAGCTATGGTCTTACACATCATACCACATGTTTAATGTCCTGACAGACTCTCTATGT
1 TCATAGTTGAGCTATGGTCTTACACATCATACCTCATGTTTAATGTCCTGACAGACTCTCTATGT
26550059 TGC
66 TGC
* * *
26550062 -CATAGTTGAGTTATGGTCTTACATATCATACCTCATGTTTAATGTCCTGGCAGACTCTCTATGT
1 TCATAGTTGAGCTATGGTCTTACACATCATACCTCATGTTTAATGTCCTGACAGACTCTCTATGT
26550126 TGC
66 TGC
*
26550129 T-ATAGTTGAGCTATGGTCTTACACATTATACCT
1 TCATAGTTGAGCTATGGTCTTACACATCATACCT
26550162 ATTACAACCC
Statistics
Matches: 207, Mismatches: 19, Indels: 16
0.86 0.08 0.07
Matches are distributed among these distances:
65 1 0.00
66 54 0.26
67 151 0.73
68 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (68 bp):
TCATAGTTGAGCTATGGTCTTACACATCATACCTCATGTTTAATGTCCTGACAGACTCTCTATGT
TGC
Found at i:26554973 original size:66 final size:66
Alignment explanation
Indices: 26554776--26555138 Score: 264
Period size: 67 Copynumber: 5.4 Consensus size: 66
26554766 TGTCATAGTT
* * * * ** * * * *
26554776 GAGCTATGGTCTTACACATAATGCCCCATGTTTAATATCTTAACAGTCTCTCTATGTGGCCATAG
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTAGGA-ACTCTATATGTTGCCATAA
*
26554841 CC
65 TC
* * * * * * * * *
26554843 AAGCTATGGTTTTACACATCATGCCCTATTTTTAATATCCTAGCAGGCTCTTTATG-TGACCATA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTAGGA-ACTCTATATGTTG-CCATA
26554907 ATC
64 ATC
* * * * *
26554910 GTGCTATGGTTTTACAAATCATA-CACATGTTTAATGTCCTAGTGAACTCTCTATGTTGCCATAA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTAG-GAACTCTATATGTTGCCATAA
26554974 TC
65 TC
* * * * * *
26554976 GAGCTATGGTCTTACACATCATACCCCATGTTCAATGTCTTGGGGGACTCTATATATTACCATAA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCT-AGGAACTCTATATGTTGCCATAA
*
26555041 CC
65 TC
* * * * *
26555043 GAGCTATGGTCTTACACATCATACCCCATGTTTAAT-TTCTTGGAGTACGCTTTATGTTGCTATA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTAGGA--ACTCTATATGTTGCCATA
* *
26555107 GTT
64 ATC
* * *
26555110 AAGCTATGATTTTACACATCATACCCCAT
1 GAGCTATGGTCTTACACATCATACCCCAT
26555139 TATAGCCCAT
Statistics
Matches: 238, Mismatches: 51, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
65 2 0.01
66 54 0.23
67 181 0.76
68 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (66 bp):
GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTAGGAACTCTATATGTTGCCATAAT
C
Found at i:26555084 original size:67 final size:67
Alignment explanation
Indices: 26554776--26555087 Score: 272
Period size: 67 Copynumber: 4.7 Consensus size: 67
26554766 TGTCATAGTT
* * * * * * *
26554776 GAGCTATGGTCTTACACATAATGCCCCATGTTTAATATCTT-AACAGTCTCTCTATGTGGCCATA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCTTGGA-GGACTCTCTATGTGACCATA
*
26554840 GCC
65 ACC
* * * * * * * * *
26554843 AAGCTATGGTTTTACACATCATGCCCTATTTTTAATATCCTAGCAGG-CTCTTTATGTGACCATA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGT-CTTGGAGGACTCTCTATGTGACCATA
*
26554907 ATC
65 ACC
* * * * * * * *
26554910 GTGCTATGGTTTTACAAATCATA-CACATGTTTAATGTCCTAGTGAACTCTCTATGTTG-CCATA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCTTGGAGGACTCTCTATG-TGACCATA
*
26554973 ATC
65 ACC
* * * * *
26554976 GAGCTATGGTCTTACACATCATACCCCATGTTCAATGTCTTGGGGGACTCTATATATTACCATAA
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCTTGGAGGACTCTCTATGTGACCATAA
26555041 CC
66 CC
*
26555043 GAGCTATGGTCTTACACATCATACCCCATGTTTAATTTCTTGGAG
1 GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCTTGGAG
26555088 TACGCTTTAT
Statistics
Matches: 196, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
65 2 0.01
66 47 0.24
67 143 0.73
68 3 0.02
69 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (67 bp):
GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCTTGGAGGACTCTCTATGTGACCATAA
CC
Found at i:26555547 original size:45 final size:45
Alignment explanation
Indices: 26555496--26555677 Score: 170
Period size: 45 Copynumber: 4.0 Consensus size: 45
26555486 GTACGATATT
* *
26555496 GATAAACCACTCATTGGTGCTAATAAAAGTTGCTAGTATGTTGTG
1 GATAAACCACTCATTAGTGCTAATAAAAGCTGCTAGTATGTTGTG
* * **
26555541 GATAAACCACTCATTAGTAC-ATATAAAATCTGCTAGTAAATTGTG
1 GATAAACCACTCATTAGTGCTA-ATAAAAGCTGCTAGTATGTTGTG
* * ** * * *
26555586 GATAAATCACTCATCAGTGAAAATAAAAGCTACTAGTACGTTGTA
1 GATAAACCACTCATTAGTGCTAATAAAAGCTGCTAGTATGTTGTG
* * * * *
26555631 GATAAACCAGTTATTGGTG-TGGATAAAAACTGCTAGTATGTTGTG
1 GATAAACCACTCATTAGTGCT-AATAAAAGCTGCTAGTATGTTGTG
26555676 GA
1 GA
26555678 CAAATGTAAC
Statistics
Matches: 108, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
44 1 0.01
45 106 0.98
46 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (45 bp):
GATAAACCACTCATTAGTGCTAATAAAAGCTGCTAGTATGTTGTG
Found at i:26558774 original size:24 final size:24
Alignment explanation
Indices: 26558747--26558792 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
26558737 CACCGGCTTG
*
26558747 AAGCTTACTAAATACACTAGCAAA
1 AAGCTGACTAAATACACTAGCAAA
*
26558771 AAGCTGGCTAAATACACTAGCA
1 AAGCTGACTAAATACACTAGCA
26558793 CAAATCCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.22, G:0.13, T:0.20
Consensus pattern (24 bp):
AAGCTGACTAAATACACTAGCAAA
Found at i:26560147 original size:34 final size:34
Alignment explanation
Indices: 26560104--26560216 Score: 136
Period size: 34 Copynumber: 3.3 Consensus size: 34
26560094 AATGCATTAT
* * *
26560104 GACATGCTTATAATAGATCAAAATGGTAGTAATG
1 GACATGCTTATAATAGATCAATATGGTAGCAATA
* *
26560138 GACATGCTTATAATAGATCAATACGGTAGGAATA
1 GACATGCTTATAATAGATCAATATGGTAGCAATA
* * * * *
26560172 GATATGCTTATAACAAATCAATATAGTAGCAAAA
1 GACATGCTTATAATAGATCAATATGGTAGCAATA
26560206 GACATGCTTAT
1 GACATGCTTAT
26560217 CATTATTCGA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (34 bp):
GACATGCTTATAATAGATCAATATGGTAGCAATA
Found at i:26560579 original size:59 final size:62
Alignment explanation
Indices: 26560508--26560624 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
26560498 ATCACTTTAA
* * *
26560508 TATTAAATTAATATAATATTT-T-T-CAAGGTAAATATTAAATTAAATTAAATATTAATTAT
1 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTAAATATTAATTAT
* * * *
26560567 TATTAAATTAATAGAATGTTTATCTACAATATAAACATTAAATTTAATTTAATATTAA
1 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTAAATATTAA
26560625 GATAATCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 19 0.40
60 1 0.02
61 1 0.02
62 27 0.56
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (62 bp):
TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTAAATATTAATTAT
Found at i:26560663 original size:25 final size:25
Alignment explanation
Indices: 26560609--26560663 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
26560599 AAACATTAAA
*
26560609 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
26560634 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
26560658 TATTAA
1 T-TTAA
26560664 GATAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:26573154 original size:5 final size:6
Alignment explanation
Indices: 26573114--26573155 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
26573104 AAAGGTTAGA
26573114 TTTTAT TTTTAT TCGTTT-T TTCTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT T--TTTAT TT-TTAT TTTTAT TTTTAT TTTT
26573156 GATATGAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 1 0.03
6 23 0.72
7 5 0.16
8 3 0.09
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:26574172 original size:84 final size:84
Alignment explanation
Indices: 26573836--26574191 Score: 446
Period size: 84 Copynumber: 4.2 Consensus size: 84
26573826 GTCCCTTTCT
*
26573836 CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACAACCGTGTGGCCAA
1 CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACGACCGTGTGGCCAA
*
26573901 CTTGGGGATTTAGGGATCC
66 CTTGGTGATTTAGGGATCC
* * * * * * * * *
26573920 TATATGAGCGTGTGTGTTCGAGAATTAGGGTTATGTGATTTGATGCCAGAC-AGTCGTTTGGCCA
1 CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACGA-CCGTGTGGCCA
* *
26573984 ACTTGGTAATTTAGAGATCC
65 ACTTGGTGATTTAGGGATCC
* * * * *
26574004 CACACGAGCATATGTGTTAGGGAATTAGGGTTATGTGATTTGATGCCACATGACCGTGTGGCCAA
1 CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACGACCGTGTGGCCAA
* * *
26574069 CTTAGAGATTTAAGGATCC
66 CTTGGTGATTTAGGGATCC
* * *
26574088 CTCACGGGCGTGTGTGTTTGGGAGTTAGGGTTATGTGATTTGATGCCACACGACCATGTGGCCAA
1 CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACGACCGTGTGGCCAA
*
26574153 CTTGGTGATTTGGGGATCC
66 CTTGGTGATTTAGGGATCC
* *
26574172 CACATGGGCATGTGT-TTTGG
1 CACACGGGCGTGTGTGTTTGG
26574192 ACACACGGTC
Statistics
Matches: 227, Mismatches: 43, Indels: 5
0.83 0.16 0.02
Matches are distributed among these distances:
83 6 0.03
84 220 0.97
85 1 0.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (84 bp):
CACACGGGCGTGTGTGTTTGGGAATTAGGGTTATGTGATTTGATGCCACACGACCGTGTGGCCAA
CTTGGTGATTTAGGGATCC
Found at i:26582146 original size:20 final size:20
Alignment explanation
Indices: 26582109--26582156 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26582099 ATGTATGGGG
* *
26582109 TTGCACTTCGGTGACTCTGT
1 TTGCACTTCGATGACTCTAT
*
26582129 TTGCACTTCGATGCCTCTAT
1 TTGCACTTCGATGACTCTAT
*
26582149 TTTCACTT
1 TTGCACTT
26582157 TAGTGCTCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.12, C:0.27, G:0.17, T:0.44
Consensus pattern (20 bp):
TTGCACTTCGATGACTCTAT
Found at i:26583119 original size:24 final size:24
Alignment explanation
Indices: 26583084--26583145 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
26583074 GAAGACATTC
* *
26583084 AGCTG-CATACGGCCTGTGACACG
1 AGCTGTCACACGGCCTGAGACACG
* *
26583107 AGCTGTCACACGGCTTGAGACATG
1 AGCTGTCACACGGCCTGAGACACG
* *
26583131 GGTTGTCACACGGCC
1 AGCTGTCACACGGCC
26583146 ATATGCCACA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 5 0.16
24 26 0.84
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (24 bp):
AGCTGTCACACGGCCTGAGACACG
Found at i:26585031 original size:30 final size:30
Alignment explanation
Indices: 26584997--26585072 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
26584987 CCCTTGCCCT
*
26584997 TGTGGCCCACACGGCCTGGCCCATAACCCG
1 TGTGGCCCACACGGCCTGGCCAATAACCCG
* * * *
26585027 TGTGGCCCATACGGCTTGGCCAATAGCCCT
1 TGTGGCCCACACGGCCTGGCCAATAACCCG
*
26585057 TATGGCCCACACGGCC
1 TGTGGCCCACACGGCC
26585073 ATACACTTGC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.17, C:0.39, G:0.26, T:0.17
Consensus pattern (30 bp):
TGTGGCCCACACGGCCTGGCCAATAACCCG
Found at i:26599861 original size:43 final size:43
Alignment explanation
Indices: 26599800--26600022 Score: 290
Period size: 43 Copynumber: 5.2 Consensus size: 43
26599790 GGCCTATTAC
* * *
26599800 AGCGGCGTTTGCGAGAAAAGCGCCGCTAAAGAACATGATCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTT
* * * *
26599843 AGCGGCATTTGTGGGAAAAGCGCAGCTAAAGAACATGGCATTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTT
* *
26599886 AGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGGCCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTT
* * *
26599929 AGCGGCGTTTGTGGGAAAGGCGTCGCTAAAGAACATGGCCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTT
* *
26599972 AGCGGCGTTT-TCAGGAAAAGCG--ACTAAAGAACATGACCTTT
1 AGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGAACATGACCTTT
26600013 AGCGGCGTTT
1 AGCGGCGTTT
26600023 ATTTCAATAA
Statistics
Matches: 161, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 27 0.17
42 1 0.01
43 133 0.83
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (43 bp):
AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTT
Found at i:26603620 original size:15 final size:16
Alignment explanation
Indices: 26603587--26603620 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26603577 TTGAGAGCCG
26603587 TTTTCACGAAATCATT
1 TTTTCACGAAATCATT
* *
26603603 TTTTCATGAAATTATT
1 TTTTCACGAAATCATT
26603619 TT
1 TT
26603621 CAAATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (16 bp):
TTTTCACGAAATCATT
Found at i:26604074 original size:22 final size:20
Alignment explanation
Indices: 26604033--26604077 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
26604023 AAAGGAAGAG
* *
26604033 ATTAATTTTTTTATATATAA
1 ATTAATTTTTTTAAAAATAA
26604053 ATTAATTAATTTTTAAAAATAA
1 ATTAATT--TTTTTAAAAATAA
26604075 ATT
1 ATT
26604078 CTTTTCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
22 14 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTAATTTTTTTAAAAATAA
Found at i:26604324 original size:15 final size:15
Alignment explanation
Indices: 26604304--26604342 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
26604294 TGATAAATTG
*
26604304 AAAAATTAAGTGTTA
1 AAAAATTAAGTATTA
26604319 AAAAA-TAAGTATTA
1 AAAAATTAAGTATTA
26604333 AAAAATTAAG
1 AAAAATTAAG
26604343 GGTTGAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (15 bp):
AAAAATTAAGTATTA
Found at i:26607096 original size:3 final size:3
Alignment explanation
Indices: 26607090--26607130 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26607080 ATTATTATTA
26607090 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
26607131 ATTTAGTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:26611085 original size:44 final size:43
Alignment explanation
Indices: 26610994--26611123 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
26610984 ATTTCGTACA
* *
26610994 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCACATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAACG
** *
26611037 ATGCCATTGTCCCAGACAG-GGTCTTACACGTAAGTCACA-AGTCG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAA-TCACATA-ACG
*
26611081 ATGCCAACGTCCTAGACGTGGTCTTACACGATAA-CACATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATAACG
26611124 GAATCCTATG
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
43 35 0.49
44 34 0.47
45 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAACG
Found at i:26613495 original size:91 final size:90
Alignment explanation
Indices: 26613366--26613530 Score: 212
Period size: 91 Copynumber: 1.8 Consensus size: 90
26613356 AATACGCTGC
*
26613366 CAGTAGTTGTGAATACACAACGGATTTGAAGATAAAAGTTGCAAGTAAAAG-TTGTGGATAAACC
1 CAGTAGTTGTGAATACACAACGGATTTGAAGATAAAAGTTGCAAGT--AAGTTTGTAGATAAACC
26613430 ACCAATGTTTGCAGGTTAATATGTTGT
64 ACCAATGTTTGCAGGTTAATATGTTGT
* *
26613457 CAGTAGGTTGTGAATGCAC-ACAGG-TTTGCAA-ATAAAAGTTGCCAGTAAGTTTGTAGATAAAC
1 CAGTA-GTTGTGAATACACAAC-GGATTTG-AAGATAAAAGTTGCAAGTAAGTTTGTAGATAAAC
* *
26613519 CACTAGTGTTTG
63 CACCAATGTTTG
26613531 TAAATAACTG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
89 3 0.05
90 21 0.32
91 25 0.38
92 16 0.25
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (90 bp):
CAGTAGTTGTGAATACACAACGGATTTGAAGATAAAAGTTGCAAGTAAGTTTGTAGATAAACCAC
CAATGTTTGCAGGTTAATATGTTGT
Found at i:26614980 original size:20 final size:20
Alignment explanation
Indices: 26614939--26614982 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26614929 TAAAAATTTT
*
26614939 AAAA-TTCAAAAAATATATA
1 AAAATTTCAAAAAATATAAA
26614958 AAAATTTCATAAAAAT-TAAA
1 AAAATTTCA-AAAAATATAAA
26614978 AAAAT
1 AAAAT
26614983 AGCATGAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 12 0.55
21 6 0.27
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATTTCAAAAAATATAAA
Found at i:26616448 original size:14 final size:12
Alignment explanation
Indices: 26616427--26616460 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
26616417 AATGGGTGTG
26616427 TTATAATTTAGTA
1 TTATAATTT-GTA
26616440 TTAATAATTTGTA
1 TT-ATAATTTGTA
26616453 TTATAATT
1 TTATAATT
26616461 AACAAGGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 7 0.35
14 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (12 bp):
TTATAATTTGTA
Found at i:26617374 original size:18 final size:19
Alignment explanation
Indices: 26617337--26617430 Score: 72
Period size: 18 Copynumber: 5.1 Consensus size: 19
26617327 ATTAAAAAAT
*
26617337 AATTTAAAATAATTTTTAA
1 AATTTAAAATAATTTATAA
26617356 AATTTAAAAT-ATTTATAA
1 AATTTAAAATAATTTATAA
**
26617374 AATTTTCAA-AATTTAT-A
1 AATTTAAAATAATTTATAA
** *
26617391 TTTTTAAAAAAATTCTA-AA
1 AATTTAAAATAATT-TATAA
*
26617410 AATTCTAAAA-AATATATAA
1 AATT-TAAAATAATTTATAA
26617429 AA
1 AA
26617431 AATATAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
17 6 0.10
18 26 0.44
19 22 0.37
20 5 0.08
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTTAAAATAATTTATAA
Found at i:26617378 original size:9 final size:9
Alignment explanation
Indices: 26617337--26617447 Score: 52
Period size: 9 Copynumber: 12.2 Consensus size: 9
26617327 ATTAAAAAAT
*
26617337 AATTTAAAA
1 AATTTATAA
*
26617346 TAATTTTTAA
1 -AATTTATAA
26617356 AATTTA-AA
1 AATTTATAA
26617364 ATATTTATAA
1 A-ATTTATAA
26617374 AATTT-TCAA
1 AATTTAT-AA
26617383 AATTTAT-A
1 AATTTATAA
** *
26617391 TTTTTAAAAA
1 AATTT-ATAA
26617401 AATTCTA-AA
1 AATT-TATAA
*
26617410 AATTCTAAAA
1 AATT-TATAA
*
26617420 AATATATAA
1 AATTTATAA
**
26617429 AAAATATAA
1 AATTTATAA
26617438 AATTT-TAA
1 AATTTATAA
26617446 AA
1 AA
26617448 ATTTTCTAAA
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
8 13 0.16
9 46 0.57
10 20 0.25
11 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTTATAA
Found at i:26617402 original size:27 final size:28
Alignment explanation
Indices: 26617322--26617451 Score: 88
Period size: 27 Copynumber: 4.6 Consensus size: 28
26617312 TCTCTCATAA
* *
26617322 TAAAAATTAAAAAATAATTTAAAATAATTT
1 TAAAAATT-TAAAAT-ATTTAAAAAAATTT
* *
26617352 TTAAAATTTAAAATATTT-ATAAAATTT
1 TAAAAATTTAAAATATTTAAAAAAATTT
* * * *
26617379 TCAAAATTT-ATATTTTTAAAAAAATTC
1 TAAAAATTTAAAATATTTAAAAAAATTT
* * *
26617406 TAAAAATTCTAAAAAATATATAAAAAA-TA
1 TAAAAATT-TAAAATATTTA-AAAAAATTT
*
26617435 TAAAATTTTAAAA-ATTT
1 TAAAAATTTAAAATATTT
26617452 TCTAAAACAA
Statistics
Matches: 79, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
26 6 0.08
27 32 0.41
28 10 0.13
29 18 0.23
30 13 0.16
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (28 bp):
TAAAAATTTAAAATATTTAAAAAAATTT
Found at i:26622826 original size:27 final size:27
Alignment explanation
Indices: 26622794--26622862 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
26622784 CGCTTATCTC
26622794 AGAGGCGCCAATGGTGGTGCC-TATCTG
1 AGAGGCGCCAATGGTGGTGCCATA-CTG
* * **
26622821 GGAGGCGCCATTATTGGTGCCATACTG
1 AGAGGCGCCAATGGTGGTGCCATACTG
*
26622848 AGAGACGCCAATGGT
1 AGAGGCGCCAATGGT
26622863 CTGTTTTTTC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.22, C:0.22, G:0.35, T:0.22
Consensus pattern (27 bp):
AGAGGCGCCAATGGTGGTGCCATACTG
Found at i:26630573 original size:38 final size:37
Alignment explanation
Indices: 26630465--26630573 Score: 87
Period size: 38 Copynumber: 2.8 Consensus size: 37
26630455 AATTGTATAG
* * *
26630465 GATCTTGAAAATTACCAACTACTTTTCTTTTGAAGTTTTC
1 GATCTTGTAAATTACCAAATAC-TTTCTTTTGAA--TTAC
* * *
26630505 TATCTTGTAAATT-CCGCATTATCTTTCTTTTAGAA-TAC
1 GATCTTGTAAATTACC-AAATA-CTTTCTTTT-GAATTAC
26630543 GATCTTGTAAATTACCAAATACTTTACTTTT
1 GATCTTGTAAATTACCAAATACTTT-CTTTT
26630574 TAGTTTTCTC
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
37 4 0.07
38 22 0.39
39 4 0.07
40 22 0.39
41 4 0.07
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.46
Consensus pattern (37 bp):
GATCTTGTAAATTACCAAATACTTTCTTTTGAATTAC
Found at i:26635061 original size:16 final size:16
Alignment explanation
Indices: 26635040--26635104 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
26635030 TTGATTTGCT
26635040 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
26635056 ATTACGCTTCTATTCC
1 ATTACGCCTCTATTCC
26635072 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
26635088 ATTGCGCCTCTATTCC
1 ATTACGCCTCTATTCC
26635104 A
1 A
26635105 ATACAGCGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.18, C:0.35, G:0.08, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:26641541 original size:15 final size:15
Alignment explanation
Indices: 26641521--26641552 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26641511 CATTTCACTA
*
26641521 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
26641536 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
26641551 TT
1 TT
26641553 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:26643342 original size:25 final size:25
Alignment explanation
Indices: 26643311--26643361 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
26643301 ATTTAATATA
* *
26643311 AAGATAAATATTCTATTATTTTAAT
1 AAGATAAATATTATATTAATTTAAT
26643336 AAGATAAATATTATATTAATTTAAT
1 AAGATAAATATTATATTAATTTAAT
26643361 A
1 A
26643362 TTAAAGTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (25 bp):
AAGATAAATATTATATTAATTTAAT
Found at i:26645266 original size:11 final size:11
Alignment explanation
Indices: 26645210--26645270 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
26645200 ATTATTTCTA
26645210 AAAAT-ATATT
1 AAAATAATATT
* *
26645220 AAAAGAAAATT
1 AAAATAATATT
26645231 CGAAAATAATATT
1 --AAAATAATATT
**
26645244 AAGCTAAATATT
1 AAAAT-AATATT
26645256 AAAATAATATT
1 AAAATAATATT
26645267 AAAA
1 AAAA
26645271 ACAATGAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
10 4 0.10
11 17 0.44
12 9 0.23
13 9 0.23
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (11 bp):
AAAATAATATT
Found at i:26647163 original size:85 final size:84
Alignment explanation
Indices: 26647074--26647526 Score: 284
Period size: 88 Copynumber: 5.1 Consensus size: 84
26647064 CCGTGATTTT
* * *
26647074 AGGGAGATAAGACCTGATGTGATCCACTCTACTATAACTTCAGATAGATAAGATCCTTTGTTTTA
1 AGGGAGATAAGACCTGAT-TGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTA
26647139 ATCCGCTCCACTGTAATCTC
65 ATCCGCTCCACTGTAATCTC
* * * * * * * * * *
26647159 AGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAA-TCTCAGGGAGATAGGATTAC-TAG
1 AGGGAGATAAGA--CCT-GATT-GATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTG
* * * **
26647222 CTTCAATCTGCTCTGCTGTAATCTC
60 TTTTAATCCGCTCCACTGTAATCTC
* *
26647247 AGGGAGATAAGACCTGATATGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTA
1 AGGGAGATAAGACCTGAT-TGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTA
26647312 ATCCGCTCCACTGTAATCTC
65 ATCCGCTCCACTGTAATCTC
* * * * * * * * * *
26647332 AGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAA-TCTCAGGGAGATAGGATTAC-TAG
1 AGGGAGATAAGA--CCT-GATT-GATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTTG
* * * * *
26647395 CTTCAATCTGCTCCGCTGTAATCTT
60 TTTTAATCCGCTCCACTGTAATCTC
* *
26647420 AGGGAGATAAGATTTCTGGCTTCAATCTGCTGCGATCTACTCTACTATAACTTCAGAGAGATAAG
1 AGGGAGATAAGA---C---C-T-GA--T--T--GATCTACTCTACTGTAACTTCAGAGAGATAAG
*
26647485 ATCCTTTATTTTAATCCGCTCCACTGTAATCTC
52 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTC
26647518 AGGGAGATA
1 AGGGAGATA
26647527 GGATAACTAG
Statistics
Matches: 270, Mismatches: 71, Indels: 41
0.71 0.19 0.11
Matches are distributed among these distances:
84 1 0.00
85 71 0.26
86 4 0.01
87 8 0.03
88 118 0.44
89 5 0.02
92 1 0.00
93 1 0.00
95 1 0.00
97 3 0.01
98 56 0.21
99 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (84 bp):
AGGGAGATAAGACCTGATTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAA
TCCGCTCCACTGTAATCTC
Found at i:26647197 original size:44 final size:44
Alignment explanation
Indices: 26647138--26647592 Score: 370
Period size: 44 Copynumber: 10.2 Consensus size: 44
26647128 CCTTTGTTTT
* * *
26647138 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
26647182 AATCTGCTCTGCTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
26647226 AATCTGCTCTGCTGTAATCTCAGGGAGATAAGA--CCT-GATAT-
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCT-TC
* * * ** * *
26647267 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCTTTTA-TTTT
1 AATCTGCTCTACTGTAATC-TCAGGGAGATAAGAT-TACTAGCTTC
* * *
26647311 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
26647355 AATCTGCTCTGCTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
** * * *
26647399 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
26647443 AATCTGCTGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AA--T-CTGC--TCTACTGTA--AT--C-TCAGGGAGATAAGAT--TACTAGCTTC
* * * *
26647497 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATAACTAGCTTC
1 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
26647541 AATCTGCTCCT-CTGTAATCTCAAGGAGATAAGATTTCTGGCTTC
1 AATCTGCT-CTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
26647585 AATCTGCT
1 AATCTGCT
26647593 TCCTTACACT
Statistics
Matches: 331, Mismatches: 56, Indels: 48
0.76 0.13 0.11
Matches are distributed among these distances:
40 1 0.00
41 29 0.09
42 3 0.01
43 6 0.02
44 243 0.73
45 3 0.01
46 1 0.00
47 6 0.02
49 13 0.04
51 5 0.02
52 1 0.00
53 1 0.00
54 17 0.05
55 1 0.00
56 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:26647363 original size:173 final size:173
Alignment explanation
Indices: 26647074--26647592 Score: 770
Period size: 173 Copynumber: 2.9 Consensus size: 173
26647064 CCGTGATTTT
* * * *
26647074 AGGGAGATAAGACCTGATGTGATCCACTCTACTATAACTTCAGATAGATAAGATCCTTTGTTTTA
1 AGGGAGATAAGACCTGATATGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
26647139 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCA
66 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCA
*
26647204 GGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTC
131 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
* *
26647247 AGGGAGATAAGACCTGATATGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTA
1 AGGGAGATAAGACCTGATATGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
26647312 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCA
66 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCA
*
26647377 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTT
131 GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
* *
26647420 AGGGAGATAAGATTTCTGGCTTCAATCTGCTGCGATCTACTCTACTATAACTTCAGAGAGATAAG
1 AGGGAGATAAGA---C---C-T-GA--T-AT--GATCTACTCTACTATAACTTCAGAGAGATAAG
*
26647485 ATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATAACTAGCTTCAATCTGCTC
53 ATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT-
* * * *
26647550 CT-CTGTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGCT
117 CTGCTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
26647593 TCCTTACACT
Statistics
Matches: 315, Mismatches: 17, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
173 177 0.56
176 1 0.00
179 1 0.00
180 1 0.00
181 1 0.00
183 1 0.00
184 1 0.00
186 130 0.41
187 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (173 bp):
AGGGAGATAAGACCTGATATGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCA
GGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
Found at i:26665653 original size:12 final size:12
Alignment explanation
Indices: 26665636--26665662 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26665626 TGAATCAGGT
26665636 AAATTTCGAGGC
1 AAATTTCGAGGC
26665648 AAATTTCGAGGC
1 AAATTTCGAGGC
26665660 AAA
1 AAA
26665663 AATTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (12 bp):
AAATTTCGAGGC
Found at i:26666860 original size:29 final size:29
Alignment explanation
Indices: 26666798--26666863 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
26666788 GCTAGACAGT
* **
26666798 CGTGTGCCAGACCGTATGAGCCACATGAC
1 CGTGTGCCAGACCATATGAGCCACACAAC
*
26666827 TGTGTGCCAGACCATATGAGCCACACAAC
1 CGTGTGCCAGACCATATGAGCCACACAAC
26666856 CGTGTGCC
1 CGTGTGCC
26666864 CACACAATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (29 bp):
CGTGTGCCAGACCATATGAGCCACACAAC
Found at i:26668437 original size:31 final size:30
Alignment explanation
Indices: 26668397--26668495 Score: 100
Period size: 31 Copynumber: 3.4 Consensus size: 30
26668387 CAACTTAAGA
26668397 AAAAATGTCAAGTTTAGGTACCAAATTAGG
1 AAAAATGTCAAGTTTAGGTACCAAATTAGG
**
26668427 AAAAAGTGTCAAGTTT-GGATATGAAATT-GG
1 AAAAA-TGTCAAGTTTAGG-TACCAAATTAGG
* *
26668457 ACAAAA---AAAGTTTAAGTACCAAATTAGG
1 A-AAAATGTCAAGTTTAGGTACCAAATTAGG
26668485 AAAAATGTCAA
1 AAAAATGTCAA
26668496 TTTCAAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
27 17 0.31
28 4 0.07
30 12 0.22
31 21 0.39
ACGTcount: A:0.47, C:0.08, G:0.19, T:0.25
Consensus pattern (30 bp):
AAAAATGTCAAGTTTAGGTACCAAATTAGG
Found at i:26668454 original size:91 final size:88
Alignment explanation
Indices: 26668326--26668495 Score: 216
Period size: 91 Copynumber: 1.9 Consensus size: 88
26668316 AGATTACATG
* * *
26668326 CCAAATTAAGAAAAAGAGTCAAGTTCAGGTATCAAATTGGACCCCAAAAAAGATTAAGTATCAAC
1 CCAAATTAAGAAAAAGAGTCAAGTTCAGGTATCAAATTGGA--CAAAAAAAGATTAAGTACCAAA
26668391 TTAAGAAAAAATGTCAAGTTTAGGTA
64 TT-AGAAAAAATGTCAAGTTTAGGTA
* * * * *
26668417 CCAAATTAGGAAAAAGTGTCAAGTT-TGGATATGAAATTGGACAAAAAAAGTTTAAGTACCAAAT
1 CCAAATTAAGAAAAAGAGTCAAGTTCAGG-TATCAAATTGGACAAAAAAAGATTAAGTACCAAAT
*
26668481 TAGGAAAAATGTCAA
65 TAGAAAAAATGTCAA
26668496 TTTCAAGTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
88 13 0.19
89 20 0.29
90 2 0.03
91 34 0.49
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.24
Consensus pattern (88 bp):
CCAAATTAAGAAAAAGAGTCAAGTTCAGGTATCAAATTGGACAAAAAAAGATTAAGTACCAAATT
AGAAAAAATGTCAAGTTTAGGTA
Found at i:26675562 original size:17 final size:17
Alignment explanation
Indices: 26675520--26675565 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
26675510 TTTTTATTTT
*
26675520 ATTTAATATTAATATAAA
1 ATTTAA-ATTTATATAAA
*
26675538 A-ATAAATTTATATAAA
1 ATTTAAATTTATATAAA
26675554 ATTTAAATTTAT
1 ATTTAAATTTAT
26675566 TTCTTTTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 11 0.46
17 12 0.50
18 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTTAAATTTATATAAA
Found at i:26677597 original size:17 final size:17
Alignment explanation
Indices: 26677560--26677593 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26677550 TTCTCGATAC
*
26677560 TAATTAAAGAAAATTAA
1 TAATTAAAGAAAATAAA
26677577 TAATT-AAGAAAATAAA
1 TAATTAAAGAAAATAAA
26677593 T
1 T
26677594 TAATGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
TAATTAAAGAAAATAAA
Found at i:26681393 original size:18 final size:19
Alignment explanation
Indices: 26681366--26681405 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
26681356 CCTCTGAACT
* *
26681366 TTTGGGTTTT-ATTTTGGA
1 TTTGGATTTTAATTTGGGA
26681384 TTTGGATTTTAATTTGGGA
1 TTTGGATTTTAATTTGGGA
26681403 TTT
1 TTT
26681406 CTAGCATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.15, C:0.00, G:0.25, T:0.60
Consensus pattern (19 bp):
TTTGGATTTTAATTTGGGA
Found at i:26685578 original size:18 final size:18
Alignment explanation
Indices: 26685557--26685593 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26685547 CGATATTGAT
26685557 GATAGTGATGCTAATGAC
1 GATAGTGATGCTAATGAC
* *
26685575 GATATTGATGCTAGTGAC
1 GATAGTGATGCTAATGAC
26685593 G
1 G
26685594 CTATTGATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (18 bp):
GATAGTGATGCTAATGAC
Found at i:26685578 original size:27 final size:27
Alignment explanation
Indices: 26685547--26685605 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
26685537 TTGATGATAT
*
26685547 CGATATTGATGATAGTGATGCTAATGA
1 CGATATTGATGATAGTGACGCTAATGA
* *
26685574 CGATATTGATGCTAGTGACGCTATTGA
1 CGATATTGATGATAGTGACGCTAATGA
*
26685601 TGATA
1 CGATA
26685606 GTGACGCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (27 bp):
CGATATTGATGATAGTGACGCTAATGA
Found at i:26685598 original size:18 final size:18
Alignment explanation
Indices: 26685562--26685619 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
26685552 TTGATGATAG
* *
26685562 TGATGCTAATGACGATAT
1 TGATGCTAGTGACGCTAT
26685580 TGATGCTAGTGACGCTAT
1 TGATGCTAGTGACGCTAT
*
26685598 TGATGATAGTGACGCTAT
1 TGATGCTAGTGACGCTAT
26685616 TGAT
1 TGAT
26685620 CGTGACCTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (18 bp):
TGATGCTAGTGACGCTAT
Found at i:26685614 original size:27 final size:27
Alignment explanation
Indices: 26685559--26685614 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
26685549 ATATTGATGA
* * *
26685559 TAGTGATGCTAATGACGATATTGATGC
1 TAGTGACGCTAATGACGATAGTGACGC
* *
26685586 TAGTGACGCTATTGATGATAGTGACGC
1 TAGTGACGCTAATGACGATAGTGACGC
26685613 TA
1 TA
26685615 TTGATCGTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (27 bp):
TAGTGACGCTAATGACGATAGTGACGC
Found at i:26687116 original size:18 final size:18
Alignment explanation
Indices: 26687082--26687134 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
26687072 ATATCATTAA
*
26687082 TAATAATATTACAAATAC
1 TAATAATATCACAAATAC
*
26687100 TAATAATATCACGAATA-
1 TAATAATATCACAAATAC
* *
26687117 TTATAAATAACACAAATA
1 TAAT-AATATCACAAATA
26687135 AACTAATCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 3 0.10
18 26 0.90
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (18 bp):
TAATAATATCACAAATAC
Found at i:26688747 original size:14 final size:14
Alignment explanation
Indices: 26688728--26688754 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26688718 TTTTACTTTA
26688728 TTATATAGATTATG
1 TTATATAGATTATG
26688742 TTATATAGATTAT
1 TTATATAGATTAT
26688755 TATTTATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (14 bp):
TTATATAGATTATG
Found at i:26688784 original size:30 final size:32
Alignment explanation
Indices: 26688724--26688784 Score: 74
Period size: 34 Copynumber: 1.9 Consensus size: 32
26688714 CCTTTTTTAC
*
26688724 TTTATTATATAGATTATGTTATATAGATTATTA
1 TTTATTATATAGAGTA-GTTATATAGATTATTA
26688757 TTTATCTATATAGAGTA-TTAT-TA-ATTAT
1 TTTAT-TATATAGAGTAGTTATATAGATTAT
26688785 ATAGAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
30 5 0.19
31 2 0.08
32 4 0.15
33 5 0.19
34 10 0.38
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (32 bp):
TTTATTATATAGAGTAGTTATATAGATTATTA
Found at i:26688787 original size:19 final size:19
Alignment explanation
Indices: 26688742--26688800 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
26688732 ATAGATTATG
* *
26688742 TTATATAGATTATTATTTA
1 TTATATAGAGTATTATTAA
26688761 TCTATATAGAGTATTATTAA
1 T-TATATAGAGTATTATTAA
26688781 TTATATAGAGTATTATTAA
1 TTATATAGAGTATTATTAA
26688800 T
1 T
26688801 CCATAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (19 bp):
TTATATAGAGTATTATTAA
Found at i:26690412 original size:3 final size:3
Alignment explanation
Indices: 26690404--26690442 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26690394 TTTGTTATGC
26690404 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
26690443 CAAAAAAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26692206 original size:11 final size:11
Alignment explanation
Indices: 26692190--26692214 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26692180 GGGTCCATTT
26692190 ATATACAATAA
1 ATATACAATAA
26692201 ATATACAATAA
1 ATATACAATAA
26692212 ATA
1 ATA
26692215 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:26699955 original size:5 final size:5
Alignment explanation
Indices: 26699945--26700008 Score: 65
Period size: 5 Copynumber: 12.8 Consensus size: 5
26699935 TAGGACATGT
* * * * * *
26699945 TATGA TATGA TATGA TCTGA TATGG TATGA TATAA TATGA TACGT TGTGA
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA
*
26699995 TATGA TAAGA TATG
1 TATGA TATGA TATG
26700009 TTCTGGTATG
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (5 bp):
TATGA
Found at i:26703476 original size:29 final size:30
Alignment explanation
Indices: 26703434--26703495 Score: 117
Period size: 29 Copynumber: 2.1 Consensus size: 30
26703424 ACTTAAAAAG
26703434 CAAATGCCTCTAAAATAATAAC-AAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
26703463 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
26703493 CAA
1 CAA
26703496 TAAAACAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.56, C:0.18, G:0.03, T:0.23
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:26704990 original size:17 final size:17
Alignment explanation
Indices: 26704968--26705007 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26704958 TCGAAATAGT
26704968 CCCACAAGGCCATGTGG
1 CCCACAAGGCCATGTGG
*
26704985 CCCACAAGGCCGTGTGG
1 CCCACAAGGCCATGTGG
*
26705002 CTCACA
1 CCCACA
26705008 CGACCTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.28, T:0.12
Consensus pattern (17 bp):
CCCACAAGGCCATGTGG
Found at i:26708463 original size:20 final size:19
Alignment explanation
Indices: 26708427--26708464 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26708417 ACATTTTTTA
*
26708427 TTATCAATATGTTTTAAAT
1 TTATCAATATATTTTAAAT
26708446 TTATCAATATTATTTTAAA
1 TTATCAATA-TATTTTAAA
26708465 AGTATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATCAATATATTTTAAAT
Found at i:26720836 original size:44 final size:44
Alignment explanation
Indices: 26720788--26721104 Score: 133
Period size: 44 Copynumber: 7.2 Consensus size: 44
26720778 AAGATAGTAG
* *
26720788 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGATGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
* * * ** *
26720832 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCTACCGA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGATGGCAA
* * * * * ** ** * * * * *
26720876 ACCTTGTCTCCCTGAGTAGCAACGGAGTTGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
* * *
26720920 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
* * **** *
26720964 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCGA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGATGGCAA
* * * ** * * * * * *
26721008 ACCTTGTCTCCCTGAGCAGCGGTGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
* *
26721052 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
26721096 ATCTTATCT
1 ATCTTATCT
26721105 TTCCAAGATA
Statistics
Matches: 184, Mismatches: 77, Indels: 24
0.65 0.27 0.08
Matches are distributed among these distances:
42 8 0.04
43 12 0.07
44 149 0.81
45 12 0.07
46 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGCAA
Found at i:26721013 original size:132 final size:132
Alignment explanation
Indices: 26720776--26721307 Score: 868
Period size: 132 Copynumber: 4.0 Consensus size: 132
26720766 AACAGATCAG
* * * *
26720776 TGAAGATAGTAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCT
* * * *
26720841 TTCCAAGATAGTGGGAAGCAGATTTAAGCTACCGAACCTTGTCTCCCTGAGTAGCAACGGAGTTG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTAG
26720906 GT
131 GT
26720908 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCT
* *
26720973 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCGGTGGAGTAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTAG
26721038 GT
131 GT
*
26721040 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCT
* * *
26721105 TTCCAAGATAGTGGGAAGCAAATTTAAGCCACCGAACCTTGTCTCTCTGAGCAGCAGCGGAGTAA
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTAG
26721170 GT
131 GT
* *
26721172 TGAAGATTGTAGATCTTATCTCTCTAAACAGTAGTGGAGCAGATCAAAGAC-GACAAATCTTATC
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGA-AAATCTTATC
* * * *
26721236 TTTCCAATATAGTGGGAAGCAGATTTAAGCCACCGAACCTTATCTCCCTGAGCAGTAGTGGAGTA
65 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTA
26721301 GGT
130 GGT
26721304 TGAA
1 TGAA
26721308 AATTACAAGT
Statistics
Matches: 373, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
131 1 0.00
132 372 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCT
TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTAG
GT
Found at i:26721463 original size:50 final size:50
Alignment explanation
Indices: 26721409--26721554 Score: 148
Period size: 50 Copynumber: 2.9 Consensus size: 50
26721399 CCACATCGGT
* * *
26721409 GAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAATAGC
1 GAATCTTGCTTCCCCGACATTGCAGTTAAACAGATTAAAGCTACAACAAC
* * * ** * ** * *
26721459 GAATCTTACTTCCCAGGCGGTGTAGTGGAACAGATTGAAGCTACAACAAT
1 GAATCTTGCTTCCCCGACATTGCAGTTAAACAGATTAAAGCTACAACAAC
* **
26721509 GAATCTTGCTTCCTCGACATCACAGTTAAACAGATTAAAGCTACAA
1 GAATCTTGCTTCCCCGACATTGCAGTTAAACAGATTAAAGCTACAA
26721555 GTTACAAATC
Statistics
Matches: 71, Mismatches: 25, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (50 bp):
GAATCTTGCTTCCCCGACATTGCAGTTAAACAGATTAAAGCTACAACAAC
Done.