Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 94 of 141
Found at i:26723545 original size:12 final size:12
Alignment explanation
Indices: 26723511--26723547 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
26723501 GTCTTTTATG
26723511 TTTTCAACATTA
1 TTTTCAACATTA
*
26723523 TTTT-AATATTA
1 TTTTCAACATTA
26723534 TTTTCAACATTA
1 TTTTCAACATTA
26723546 TT
1 TT
26723548 CATTGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TTTTCAACATTA
Found at i:26723723 original size:20 final size:19
Alignment explanation
Indices: 26723687--26723724 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26723677 ACATTTTTTA
*
26723687 TTATCAATATGTTTTAAAT
1 TTATCAATATATTTTAAAT
26723706 TTATCAATATTATTTTAAA
1 TTATCAATA-TATTTTAAA
26723725 AGTATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATCAATATATTTTAAAT
Found at i:26726915 original size:9 final size:9
Alignment explanation
Indices: 26726901--26726929 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
26726891 GAATGTGAAA
26726901 TGAATTGGT
1 TGAATTGGT
26726910 TGAATTGGT
1 TGAATTGGT
26726919 TGAATTGGT
1 TGAATTGGT
26726928 TG
1 TG
26726930 TGATTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (9 bp):
TGAATTGGT
Found at i:26731965 original size:5 final size:5
Alignment explanation
Indices: 26731955--26731998 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
26731945 NNNNNNNTTT
26731955 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA TTATA -TATA T
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA T
26731999 ACATAAAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
3 2 0.06
4 6 0.17
5 22 0.63
6 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:26731980 original size:19 final size:19
Alignment explanation
Indices: 26731956--26731998 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
26731946 NNNNNNTTTT
26731956 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
26731975 TATATTATATTATATTATA
1 TATATTATATTATATTATA
26731994 TATAT
1 TATAT
26731999 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:26732029 original size:16 final size:16
Alignment explanation
Indices: 26732008--26732054 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
26731998 TACATAAAAC
*
26732008 AAAAGAAAGAATAGAA
1 AAAAGAAAGAAAAGAA
26732024 AAAAGAAAGAAAAG-A
1 AAAAGAAAGAAAAGAA
*
26732039 AACAGAATAGAAAAGA
1 AAAAGAA-AGAAAAGA
26732055 CGAAACAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.04
Consensus pattern (16 bp):
AAAAGAAAGAAAAGAA
Found at i:26732070 original size:25 final size:26
Alignment explanation
Indices: 26732011--26732070 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 26
26732001 ATAAAACAAA
26732011 AGAAAGAATAGAAAAAAGAAAGAAAAG
1 AGAAAGAATAG-AAAAAGAAAGAAAAG
*
26732038 A-AACAGAATAG-AAAAG-ACGAAACAG
1 AGAA-AGAATAGAAAAAGAAAGAAA-AG
26732063 AGAAAGAA
1 AGAAAGAA
26732071 ACAGAGAGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 5 0.17
25 12 0.41
26 4 0.14
27 8 0.28
ACGTcount: A:0.70, C:0.05, G:0.22, T:0.03
Consensus pattern (26 bp):
AGAAAGAATAGAAAAAGAAAGAAAAG
Found at i:26732107 original size:4 final size:4
Alignment explanation
Indices: 26732100--26732127 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
26732090 GAGAAGGAAG
26732100 GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA
26732128 ATAGGGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:26733166 original size:39 final size:39
Alignment explanation
Indices: 26733093--26733259 Score: 176
Period size: 39 Copynumber: 4.2 Consensus size: 39
26733083 ATTTGCCGGC
* * *
26733093 TTACTGA-TCAGGCA-TTTATGTGCCGACTACTGTTACTG
1 TTACTGATTCA-GCACTTTGTGTGTCGAATACTGTTACTG
26733131 TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTG
* * *
26733170 TTACTGACTCGGCACTTTGTGTGTAGAATACAGTTACCGTTACTG
1 TTACTGATTCAGCACTTTGTGTGTCGAATAC---T---GTTACTG
* * *
26733215 TTACAGGTTCAGCACTTTGTGTGTTGAATACTGTTACTG
1 TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTG
26733254 TTACTG
1 TTACTG
26733260 TTACTGATTA
Statistics
Matches: 109, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
38 10 0.09
39 64 0.59
42 2 0.02
45 33 0.30
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATTCAGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:26733212 original size:45 final size:43
Alignment explanation
Indices: 26733124--26733268 Score: 172
Period size: 45 Copynumber: 3.4 Consensus size: 43
26733114 GCCGACTACT
*
26733124 GTTACTGTTACTGATTCAGCACTTTGTGTGTCGAATAC--T--
1 GTTACTGTTACTGATTCAGCACTTTGTGTGTAGAATACGTTAC
* *
26733163 GTTACTGTTACTGACTCGGCACTTTGTGTGTAGAATACAGTTACC
1 GTTACTGTTACTGATTCAGCACTTTGTGTGTAGAATAC-GTTA-C
* * *
26733208 GTTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTGTTAC
1 GTTACTGTTACTGATTCAGCACTTTGTGTGTAGAATAC-GTTAC
26733252 TGTTACTGTTACTGATT
1 -GTTACTGTTACTGATT
26733269 ACTGTATACT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
39 35 0.40
42 1 0.01
44 1 0.01
45 51 0.58
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (43 bp):
GTTACTGTTACTGATTCAGCACTTTGTGTGTAGAATACGTTAC
Found at i:26733278 original size:7 final size:6
Alignment explanation
Indices: 26733243--26733279 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
26733233 GTGTGTTGAA
26733243 TACTGT TACTGT TACTGT TACTGAT TACTGT ATACTG
1 TACTGT TACTGT TACTGT TACTG-T TACTGT -TACTG
26733280 GTGTGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (6 bp):
TACTGT
Found at i:26735220 original size:56 final size:56
Alignment explanation
Indices: 26735154--26735266 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
26735144 GTCTCGGCCC
26735154 GAATGTCTGCTCGAAAAGTGAGATGGTTTAGGTAAAAATATAGGCCCGAAAAATGG
1 GAATGTCTGCTCGAAAAGTGAGATGGTTTAGGTAAAAATATAGGCCCGAAAAATGG
* *
26735210 GAATGTCTGCTCGAAAAGTGAGATGTTTTAGGTAAAAATATAGGCTCGAAAAATGG
1 GAATGTCTGCTCGAAAAGTGAGATGGTTTAGGTAAAAATATAGGCCCGAAAAATGG
26735266 G
1 G
26735267 TTTGGGCAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (56 bp):
GAATGTCTGCTCGAAAAGTGAGATGGTTTAGGTAAAAATATAGGCCCGAAAAATGG
Found at i:26736143 original size:44 final size:45
Alignment explanation
Indices: 26736076--26736169 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 45
26736066 AGGTTTCGGT
26736076 TGAAAAAAGAAGGGAAAAGTAAGGTTAATATTGTATATACAATAA
1 TGAAAAAAGAAGGGAAAAGTAAGGTTAATATTGTATATACAATAA
*
26736121 -GAAAAAAGAAGGGAAAATTAAGGTTAATATTGTATATACAATAA
1 TGAAAAAAGAAGGGAAAAGTAAGGTTAATATTGTATATACAATAA
26736165 TGAAA
1 TGAAA
26736170 TTATAAATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 43 0.91
45 4 0.09
ACGTcount: A:0.54, C:0.02, G:0.19, T:0.24
Consensus pattern (45 bp):
TGAAAAAAGAAGGGAAAAGTAAGGTTAATATTGTATATACAATAA
Found at i:26736540 original size:41 final size:41
Alignment explanation
Indices: 26736483--26736566 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26736473 GAAAAACCTT
26736483 AAGACTAATTAAATAATATAACATGAAGGATCCAACAAGAC
1 AAGACTAATTAAATAATATAACATGAAGGATCCAACAAGAC
26736524 AAGACTAATTAAATAATATAACATGAAGGATCCAACAAGAC
1 AAGACTAATTAAATAATATAACATGAAGGATCCAACAAGAC
26736565 AA
1 AA
26736567 CAAACAAGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.19
Consensus pattern (41 bp):
AAGACTAATTAAATAATATAACATGAAGGATCCAACAAGAC
Found at i:26738718 original size:39 final size:40
Alignment explanation
Indices: 26738675--26738761 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
26738665 GAATTATGGG
* * *
26738675 ATACTGGATATTGTTTTG-ATTACTG-AGTGAATTGTGAAA
1 ATACTGAATATTGTTATGTA-TAATGCAGTGAATTGTGAAA
*
26738714 ATACTGAATATTGTTATGTATAATGCATTGAATTGTGAAA
1 ATACTGAATATTGTTATGTATAATGCAGTGAATTGTGAAA
*
26738754 TTACTGAA
1 ATACTGAA
26738762 GTAAAGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 20 0.49
40 21 0.51
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (40 bp):
ATACTGAATATTGTTATGTATAATGCAGTGAATTGTGAAA
Found at i:26738988 original size:38 final size:39
Alignment explanation
Indices: 26738936--26739018 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
26738926 ATTTGCCGGC
*
26738936 TTACTGATCAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATCAGGCACTTTATGTGCCGAATACTGTTACTG
* *
26738974 TTACTGATTC-GGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGA-TCAGGCACTTTATGTGCCGAATACTGTTACTG
26739013 TTACTG
1 TTACTG
26739019 TTACTGACTC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 12 0.30
39 28 0.70
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATCAGGCACTTTATGTGCCGAATACTGTTACTG
Found at i:26739016 original size:39 final size:39
Alignment explanation
Indices: 26738936--26739108 Score: 152
Period size: 45 Copynumber: 4.2 Consensus size: 39
26738926 ATTTGCCGGC
* * *
26738936 TTACTGA-TCAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTC-GGCACTTTGTGTGTCGAATACTGTTACTG
26738974 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
26739013 TTACTGTTACTGACTCGGCACTTTGTGTGTCGAATACAGTTACCGTTACTG
1 TTACTG--A-T---TCGGCACTTTGTGTGTCGAATAC---T---GTTACTG
* * * *
26739064 TTACAGGTTCAGCACTTTGTGTGTTGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
26739103 TTACTG
1 TTACTG
26739109 TTACTGATTA
Statistics
Matches: 113, Mismatches: 8, Indels: 27
0.76 0.05 0.18
Matches are distributed among these distances:
38 12 0.11
39 40 0.35
41 1 0.01
42 2 0.02
45 44 0.39
48 2 0.02
51 12 0.11
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:26739031 original size:45 final size:45
Alignment explanation
Indices: 26738963--26739117 Score: 247
Period size: 45 Copynumber: 3.4 Consensus size: 45
26738953 ATGTGCCGAC
26738963 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
* *
26739008 TACTGTTACTGTTACTGACTCGGCACTTTGTGTGTCGAATACAGT
1 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
* * * * *
26739053 TACCGTTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
26739098 TACTGTTACTGTTACTGATT
1 TACTGTTACTGTTACTGATT
26739118 ACTGTATACT
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 98 1.00
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
Found at i:26739127 original size:7 final size:6
Alignment explanation
Indices: 26739092--26739128 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
26739082 GTGTGTTGAA
26739092 TACTGT TACTGT TACTGT TACTGAT TACTGT ATACTG
1 TACTGT TACTGT TACTGT TACTG-T TACTGT -TACTG
26739129 GTGTGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (6 bp):
TACTGT
Found at i:26750113 original size:31 final size:31
Alignment explanation
Indices: 26750078--26750139 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
26750068 TTTAACAACC
*
26750078 TAGTGGCTTAAATA-AAAACTTTTGAATAGTT
1 TAGTGACTTAAA-AGAAAACTTTTGAATAGTT
26750109 TAGTGACTTAAAAGAAAACTTTTGAATAGTT
1 TAGTGACTTAAAAGAAAACTTTTGAATAGTT
26750140 CAATGACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.37
Consensus pattern (31 bp):
TAGTGACTTAAAAGAAAACTTTTGAATAGTT
Found at i:26752879 original size:45 final size:45
Alignment explanation
Indices: 26752823--26752908 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
26752813 ACAAGACGAT
* *
26752823 TCAGCATGATTTCAGAGTACCTACTAGACCAGCTGATAGTGTGGG
1 TCAGCAGGATTTCAGAGTACCTACTAAACCAGCTGATAGTGTGGG
*
26752868 TCAGCAGGATTTTAGAGTACCTACTAAACCAGCTGATAGTG
1 TCAGCAGGATTTCAGAGTACCTACTAAACCAGCTGATAGTG
26752909 CAGAAAGTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (45 bp):
TCAGCAGGATTTCAGAGTACCTACTAAACCAGCTGATAGTGTGGG
Found at i:26757699 original size:11 final size:11
Alignment explanation
Indices: 26757683--26757726 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
26757673 AACTCTTTTG
26757683 AGCTTCTGTTC
1 AGCTTCTGTTC
26757694 AGCTTCTGTTC
1 AGCTTCTGTTC
*
26757705 AGC-TCT-TAC
1 AGCTTCTGTTC
26757714 GAGCTTCTGTTC
1 -AGCTTCTGTTC
26757726 A
1 A
26757727 ACTCTTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 2 0.07
10 6 0.21
11 18 0.64
12 2 0.07
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (11 bp):
AGCTTCTGTTC
Found at i:26757718 original size:21 final size:21
Alignment explanation
Indices: 26757694--26757787 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
26757684 GCTTCTGTTC
*
26757694 AGCTTCTGTTCAGCTCTTACG
1 AGCTTCTGTTCAGCTCTTACA
*
26757715 AGCTTCTGTTCAACTCTTACA
1 AGCTTCTGTTCAGCTCTTACA
26757736 AG-TTCCTGTTCAGCTCTTACA
1 AGCTT-CTGTTCAGCTCTTACA
*
26757757 AG-TTCCTGTTCAGCTCTTACG
1 AGCTT-CTGTTCAGCTCTTACA
26757778 AGCTTCTGTT
1 AGCTTCTGTT
26757788 GGCATGTTCA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
20 2 0.03
21 63 0.94
22 2 0.03
ACGTcount: A:0.17, C:0.28, G:0.16, T:0.39
Consensus pattern (21 bp):
AGCTTCTGTTCAGCTCTTACA
Found at i:26762592 original size:20 final size:21
Alignment explanation
Indices: 26762546--26762594 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
26762536 TAGATCCTCC
* *
26762546 CATTATTTTTTTTTCTTTTTGT
1 CATTA-TTGTTTTTCTTTTTCT
*
26762568 TATTATTGTTTTTC-TTTTCT
1 CATTATTGTTTTTCTTTTTCT
26762588 CATTATT
1 CATTATT
26762595 ATTGTTTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.48
21 8 0.35
22 4 0.17
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.73
Consensus pattern (21 bp):
CATTATTGTTTTTCTTTTTCT
Found at i:26762593 original size:23 final size:22
Alignment explanation
Indices: 26762546--26762602 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
26762536 TAGATCCTCC
26762546 CATTATT-TT-TTTTTCTTTTT
1 CATTATTATTGTTTTTCTTTTT
*
26762566 -GTTATTATTGTTTTTCTTTTCT
1 CATTATTATTGTTTTTCTTTT-T
26762588 CATTATTATTGTTTT
1 CATTATTATTGTTTT
26762603 GGTATAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 5 0.16
20 2 0.06
21 10 0.32
22 1 0.03
23 13 0.42
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (22 bp):
CATTATTATTGTTTTTCTTTTT
Found at i:26762874 original size:26 final size:26
Alignment explanation
Indices: 26762834--26762892 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 26
26762824 GTAACGTCAA
26762834 TAAATAATTTGAAAATTAAA-AAATAT
1 TAAA-AATTTGAAAATTAAACAAATAT
*
26762860 TCAAAAATTTTAAAATTAAACAAATAT
1 T-AAAAATTTGAAAATTAAACAAATAT
26762887 TAAAAA
1 TAAAAA
26762893 GTTCATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (26 bp):
TAAAAATTTGAAAATTAAACAAATAT
Found at i:26768536 original size:17 final size:17
Alignment explanation
Indices: 26768516--26768615 Score: 94
Period size: 17 Copynumber: 5.9 Consensus size: 17
26768506 TCACTAAATG
26768516 TACGAGCTCTA-CAAAAC
1 TACGAGCTC-ACCAAAAC
* *
26768533 TACGAGCTCGCCAAATC
1 TACGAGCTCACCAAAAC
** * *
26768550 TATAAGCTCATCAAGAC
1 TACGAGCTCACCAAAAC
*
26768567 TACGAGCTCACCAAGAC
1 TACGAGCTCACCAAAAC
*
26768584 TACGAGCTCACCAAGAC
1 TACGAGCTCACCAAAAC
* *
26768601 TGCAAGCTCACCAAA
1 TACGAGCTCACCAAA
26768616 CTTGTGACGA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
17 68 1.00
ACGTcount: A:0.37, C:0.32, G:0.15, T:0.16
Consensus pattern (17 bp):
TACGAGCTCACCAAAAC
Found at i:26768916 original size:70 final size:70
Alignment explanation
Indices: 26768803--26768944 Score: 212
Period size: 70 Copynumber: 2.0 Consensus size: 70
26768793 AATCAAGTTG
** * * *
26768803 CAAGATTAAGCCAAATTGTAATTATTTTATTATTGTTTTTAGCTTATTTATGCTAACTTGTTCTT
1 CAAGATTAAGCCAAATTGTAATTATTTTATTATTACTATTAGCTTATTTAAGCTAACTTGTTATT
26768868 GTAAA
66 GTAAA
* * *
26768873 CAAGATTAAGCCAAGTTGTAATTATTTTATTATTACTATTAGCTTATTTAAGCTCATTTGTTATT
1 CAAGATTAAGCCAAATTGTAATTATTTTATTATTACTATTAGCTTATTTAAGCTAACTTGTTATT
26768938 GTAAA
66 GTAAA
26768943 CA
1 CA
26768945 TTGTATTAGC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (70 bp):
CAAGATTAAGCCAAATTGTAATTATTTTATTATTACTATTAGCTTATTTAAGCTAACTTGTTATT
GTAAA
Found at i:26772030 original size:27 final size:27
Alignment explanation
Indices: 26772000--26772843 Score: 758
Period size: 27 Copynumber: 31.4 Consensus size: 27
26771990 GGTATAATAG
* ** * *
26772000 TCATTTTACCTTATAAGGATATTTTGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
26772027 TCATTTTACCCTATGGGGGTATTCCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772054 TCATTCTACCCTATAGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
26772081 TCATTTTATCCC-ATGGGGGTATTTCGG
1 TCATTTTA-CCCTATGGGGGTATTTCGA
* * * * *
26772108 TTATTATACCTTATAGGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
26772134 GTCATTTTACCCTATGGGGGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
* * **
26772162 TCATTTTAACCTATAGGATTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772189 TTATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * * * *
26772216 CCATTCTATCTTATGGGAGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772243 TCATTTTACCCTATAGGGGTATTTTGT
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
26772270 TCATTTTACCTTATGGGGGTATTTTTG-
1 TCATTTTACCCTATGGGGGTA-TTTCGA
26772297 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * *
26772324 TCATTCTACCCTAT-AGGATTTTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772350 TCATTCTACCCAATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772377 TTATTTTACCTTATAGGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
**
26772403 GTCATTTTACCCTATAAGGGTATTTC-A
1 -TCATTTTACCCTATGGGGGTATTTCGA
* *
26772430 GTCATTTTACCCTATGGGAGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772458 TCATGTTACCCTATTGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
*
26772485 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772512 TCATTTTACCCTAT-CGAGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
*
26772538 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * * *
26772565 TCATTCTACCTTATTGAGGTAATTT-GG
1 TCATTTTACCCTATGGGGGT-ATTTCGA
*
26772592 TCATTTTACCCTATTGGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
26772618 GTCATTTTACCCTATGAGGGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
*
26772646 TCATTTTACCCTATGGGGGTA-TTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
** *
26772672 TCATTTTACCCTATGATGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
** ** *
26772699 TCATTTTATTCTATGCAGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * **
26772726 TCATTTTATCATATGCAGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772752 GTCATTTTACCCTATGGAGGTATTTTGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
*
26772780 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
26772807 TCATTTTACTCC-ATGGAGGTATTTTGG
1 TCATTTTAC-CCTATGGGGGTATTTCGA
26772834 TCATTTTACC
1 TCATTTTACC
26772844 TCTTTTGGGA
Statistics
Matches: 677, Mismatches: 122, Indels: 37
0.81 0.15 0.04
Matches are distributed among these distances:
26 80 0.12
27 583 0.86
28 14 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:26772127 original size:81 final size:80
Alignment explanation
Indices: 26771999--26772843 Score: 863
Period size: 81 Copynumber: 10.5 Consensus size: 80
26771989 GGGTATAATA
* ** * * * * *
26771999 GTCATTTTACCTTATAAGGATATTTTGATCATTTTACCCTATGGGGGTATTCCGGTCATTCTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACC
* *
26772064 CTATAGGGGTATTTCA
65 CTATGGGGGTATTTCG
* * * * **
26772080 ATCATTTTATCCC-ATGGGGGTATTTCGGTTATTATACCTTATAGGGGTATTTTAGTCATTTTAC
1 GTCATTTTA-CCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTAC
26772144 CCTATGGGGGTATTTCG
64 CCTATGGGGGTATTTCG
* * ** * * * * ** * *
26772161 GTCATTTTAACCTATAGGATTATTTCGATTATTCTACCTTATGGGGGTATTTCGACCATTCTATC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACC
* *
26772226 TTATGGGAGTATTTCG
65 CTATGGGGGTATTTCG
* * * * **
26772242 GTCATTTTACCCTATAGGGGTATTTTGTTCATTTTACCTTATGGGGGTATTTTTGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACC
26772307 CTATGGGGGTATTTCG
65 CTATGGGGGTATTTCG
* * * * * * * * *
26772323 ATCATTCTACCCTAT-AGGATTTTTCGATCATTCTACCCAATGGGGGTATTTCGGTTATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACC
* * *
26772387 TTATAGGGGTATTTCA
65 CTATGGGGGTATTTCG
** * *
26772403 GTCATTTTACCCTATAAGGGTATTTCAGTCATTTTACCCTATGGGAGTATTTCGGTCATGTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGG-GTATTTCGGTCATTTTACC
*
26772468 CTATTGGGGTATTTCG
65 CTATGGGGGTATTTCG
* * * *
26772484 GTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATCGAGTATTTCGGTCATTTTACCC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCC
26772549 TATGGGGGTATTTCG
66 TATGGGGGTATTTCG
* * * * *
26772564 GTCATTCTACCTTATTGAGGTAATTT-GGTCATTTTACCCTATTGGGGTATTTCAGTCATTTTAC
1 GTCATTTTACCCTATGGGGGT-ATTTCGGTCATTTTACCCTA-TGGGGTATTTCGGTCATTTTAC
*
26772628 CCTATGAGGGTATTTCG
64 CCTATGGGGGTATTTCG
* **
26772645 GTCATTTTACCCTATGGGGGTA-TTCGGTCATTTTACCCTATGATGGTATTTCGGTCATTTTATT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCGGTCATTTTACC
**
26772709 CTATGCAGGTATTTCG
65 CTATGGGGGTATTTCG
* * ** * *
26772725 GTCATTTTATCATATGCAGGTATTTCAGTCATTTTACCCTATGGAGGTATTTTGGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGG-GGTATTTCGGTCATTTTACC
26772790 CTATGGGGGTATTTCG
65 CTATGGGGGTATTTCG
* *
26772806 GTCATTTTACTCC-ATGGAGGTATTTTGGTCATTTTACC
1 GTCATTTTAC-CCTATGGGGGTATTTCGGTCATTTTACC
26772844 TCTTTTGGGA
Statistics
Matches: 633, Mismatches: 120, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
79 4 0.01
80 199 0.31
81 427 0.67
82 3 0.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCC
TATGGGGGTATTTCG
Found at i:26772823 original size:54 final size:53
Alignment explanation
Indices: 26771999--26772843 Score: 863
Period size: 54 Copynumber: 15.7 Consensus size: 53
26771989 GGGTATAATA
* * * * * *
26771999 GTCATTTTACCTTATAAGGATATTTTGATCATTTTACCCTATGGGGGTATTCCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* **
26772053 GTCATTCTACCCTATAGGGGTATTTCAATCATTTTATCCC-ATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTA-CCCTATGGGGGTATTTCG
* * * **
26772107 GTTATTATACCTTATAGGGGTATTTTAGTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* ** * * * *
26772161 GTCATTTTAACCTATAGGATTATTTCGATTATTCTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
** * * * * *
26772215 ACCATTCTATCTTATGGGAGTATTTCGGTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGG-GTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * **
26772269 TTCATTTTACCTTATGGGGGTATTTTTGTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * * * * *
26772323 ATCATTCTACCCTATAGGATTTTTCGATCATTCTACCCAATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * ** *
26772376 GTTATTTTACCTTATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* *
26772430 GTCATTTTACCCTATGGGAGTATTTCGGTCATGTTACCCTATTGGGGTATTTCG
1 GTCATTTTACCCTATGGG-GTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * *
26772484 GTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTAT-CGAGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * *
26772537 GTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCTTATTGAGGTAATTT-G
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGT-ATTTCG
* *
26772591 GTCATTTTACCCTATTGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTA-TGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
**
26772645 GTCATTTTACCCTATGGGGGTA-TTCGGTCATTTTACCCTATGATGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
** * * * ** *
26772698 GTCATTTTATTCTATGCAGGTATTTCGGTCATTTTATCATATGCAGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
*
26772752 GTCATTTTACCCTATGGAGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGG-GGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
*
26772806 GTCATTTTACTCC-ATGGAGGTATTTTGGTCATTTTACC
1 GTCATTTTAC-CCTATGG-GGTATTTCGGTCATTTTACC
26772844 TCTTTTGGGA
Statistics
Matches: 661, Mismatches: 114, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.00
53 147 0.22
54 497 0.75
55 16 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (53 bp):
GTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
Found at i:26779099 original size:12 final size:12
Alignment explanation
Indices: 26779082--26779108 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26779072 TCAATCAGTT
26779082 ACACGGCCTAGC
1 ACACGGCCTAGC
26779094 ACACGGCCTAGC
1 ACACGGCCTAGC
26779106 ACA
1 ACA
26779109 GGGCATGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:26782714 original size:12 final size:12
Alignment explanation
Indices: 26782697--26782733 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
26782687 CCGAAGGAAC
26782697 CAGCAACAACAA
1 CAGCAACAACAA
*
26782709 CAGCAACAGCAA
1 CAGCAACAACAA
26782721 CAGCAACAACAA
1 CAGCAACAACAA
26782733 C
1 C
26782734 CAATGTAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.54, C:0.35, G:0.11, T:0.00
Consensus pattern (12 bp):
CAGCAACAACAA
Found at i:26782715 original size:6 final size:6
Alignment explanation
Indices: 26782697--26782733 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
26782687 CCGAAGGAAC
* *
26782697 CAGCAA CAACAA CAGCAA CAGCAA CAGCAA CAACAA C
1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA C
26782734 CAATGTAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.54, C:0.35, G:0.11, T:0.00
Consensus pattern (6 bp):
CAGCAA
Found at i:26784748 original size:18 final size:19
Alignment explanation
Indices: 26784721--26784764 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
26784711 TCAAATTTTA
*
26784721 TTTTTCTCTTTT-TTTAT-G
1 TTTTTTTCTTTTCTTT-TGG
26784739 TTTTTTTCTTTTCTTTTGG
1 TTTTTTTCTTTTCTTTTGG
26784758 TTTTTTT
1 TTTTTTT
26784765 TTTCAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.02, C:0.09, G:0.07, T:0.82
Consensus pattern (19 bp):
TTTTTTTCTTTTCTTTTGG
Found at i:26785873 original size:30 final size:30
Alignment explanation
Indices: 26785832--26785904 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
26785822 ATGGCTATGT
*
26785832 GCTAGGCCATGTGAGCCACATGGCCGTGTG
1 GCTAGGCCATGTGAGCCACACGGCCGTGTG
* * *
26785862 GCTAGGTCATGTGCGCCACACGGCTGTGTG
1 GCTAGGCCATGTGAGCCACACGGCCGTGTG
* *
26785892 GCCAGGCCGTGTG
1 GCTAGGCCATGTG
26785905 GAATCCCCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.14, C:0.27, G:0.38, T:0.21
Consensus pattern (30 bp):
GCTAGGCCATGTGAGCCACACGGCCGTGTG
Found at i:26794767 original size:24 final size:24
Alignment explanation
Indices: 26794735--26794784 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
26794725 AATATAGAGA
26794735 ATACAAGGAAACGAGCATGCTAGT
1 ATACAAGGAAACGAGCATGCTAGT
26794759 ATACAAGGAAACGAGCATGCTAGT
1 ATACAAGGAAACGAGCATGCTAGT
26794783 AT
1 AT
26794785 GAATGATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (24 bp):
ATACAAGGAAACGAGCATGCTAGT
Found at i:26795452 original size:18 final size:18
Alignment explanation
Indices: 26795429--26795463 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26795419 ATGATATGCT
26795429 AAACTATTTTCATGCTTG
1 AAACTATTTTCATGCTTG
*
26795447 AAACTATTTTGATGCTT
1 AAACTATTTTCATGCTT
26795464 ACTATTCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:26801549 original size:51 final size:51
Alignment explanation
Indices: 26801473--26801579 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
26801463 AGGGATGTTG
*
26801473 CGACACACCCCTAAAGCTACATTGAGTACGAGC-ATATTGCCTCTAATGTCA
1 CGACACACCCCTAAAGCTACATTGAGTACGA-CAATATTGCCTCCAATGTCA
* * * * *
26801524 CGACACACCCTTGAAGCTACCTTGAGTATGACAATATTGCCTCCGATGTCA
1 CGACACACCCCTAAAGCTACATTGAGTACGACAATATTGCCTCCAATGTCA
26801575 CGACA
1 CGACA
26801580 TCGGTCCTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 1 0.02
51 48 0.98
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (51 bp):
CGACACACCCCTAAAGCTACATTGAGTACGACAATATTGCCTCCAATGTCA
Found at i:26825515 original size:35 final size:36
Alignment explanation
Indices: 26825438--26825515 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
26825428 TGAACACACA
*
26825438 TATATATATAAAGTATATAAATAATACATAAGTATG
1 TATATATATAAAGTAAATAAATAATACATAAGTATG
** *
26825474 TATATATATAAA-TAAATTAAA-AATATGTACGTATG
1 TATATATATAAAGTAAA-TAAATAATACATAAGTATG
26825509 TATATAT
1 TATATAT
26825516 TTATATAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 21 0.57
36 16 0.43
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (36 bp):
TATATATATAAAGTAAATAAATAATACATAAGTATG
Found at i:26825538 original size:30 final size:28
Alignment explanation
Indices: 26825498--26825557 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
26825488 AATTAAAAAT
* *
26825498 ATGTACGTATGTATATATTTATATAACAAA
1 ATGTACGTATGTACATA--TATACAACAAA
*
26825528 ATGTATGTATGTACATATATACAACAAA
1 ATGTACGTATGTACATATATACAACAAA
26825556 AT
1 AT
26825558 TTGAAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
30 15 0.56
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (28 bp):
ATGTACGTATGTACATATATACAACAAA
Found at i:26826416 original size:5 final size:6
Alignment explanation
Indices: 26826357--26826421 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
26826347 CACGGAGAAA
* * ** *
26826357 AAAAAGT AAAAAT AAAAAT AAAAAAT AAGAAT AAATAT GTACAT AAAAAT
1 AAAAA-T AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
26826407 AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAA
26826422 GAGAGAGAAG
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
6 37 0.77
7 11 0.23
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:26827237 original size:44 final size:44
Alignment explanation
Indices: 26827187--26827325 Score: 131
Period size: 44 Copynumber: 3.2 Consensus size: 44
26827177 TTTTTAATCC
26827187 GCTCCACTGTAACTTCAGAGAGATAGGATTTATTTCTTCTGTCT
1 GCTCCACTGTAACTTCAGAGAGATAGGATTTATTTCTTCTGTCT
* * * * * * ** * *
26827231 GCTCCACTACT-GCTT-AGGGAGATAAGATCT-GTGGTTCTAATCC
1 GCTCCACT-GTAACTTCAGAGAGATAGGATTTATTTCTTCT-GTCT
* *
26827274 GCTCCACTGCAACTTCAGAGAGATAGGATTGATTTCTTCTGTCT
1 GCTCCACTGTAACTTCAGAGAGATAGGATTTATTTCTTCTGTCT
26827318 GCTCCACT
1 GCTCCACT
26827326 ACTGATTAAG
Statistics
Matches: 68, Mismatches: 22, Indels: 10
0.68 0.22 0.10
Matches are distributed among these distances:
42 5 0.07
43 25 0.37
44 32 0.47
45 6 0.09
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (44 bp):
GCTCCACTGTAACTTCAGAGAGATAGGATTTATTTCTTCTGTCT
Found at i:26827281 original size:87 final size:87
Alignment explanation
Indices: 26827167--26827355 Score: 306
Period size: 87 Copynumber: 2.2 Consensus size: 87
26827157 TATGGGGATG
* * * *
26827167 AGATTTGTGGTTTTTAATCCGCTCCACTGTAACTTCAGAGAGATAGGATTTATTTCTTCTGTCTG
1 AGATCTGTGG-TTCTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGATTTCTTCTGTCTG
* *
26827232 CTCCACTACTGCTTAGGGAGATA
65 CTCCACTACTGATTAAGGAGATA
26827255 AGATCTGTGGTTCTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGATTTCTTCTGTCTGC
1 AGATCTGTGGTTCTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGATTTCTTCTGTCTGC
26827320 TCCACTACTGATTAAGGAGATA
66 TCCACTACTGATTAAGGAGATA
*
26827342 AGACCTGTGGTTCT
1 AGATCTGTGGTTCT
26827356 GTCTGCTCCA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 85 0.90
88 9 0.10
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (87 bp):
AGATCTGTGGTTCTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGATTTCTTCTGTCTGC
TCCACTACTGATTAAGGAGATA
Found at i:26827359 original size:42 final size:41
Alignment explanation
Indices: 26827223--26827384 Score: 137
Period size: 42 Copynumber: 3.8 Consensus size: 41
26827213 GATTTATTTC
* *
26827223 TTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGG
1 TTCTGTCTGCTCCACTACTGATTAAGGAGATAAGA-CTGTGG
* * * * * * * **
26827265 TTCTAATCCGCTCCACTGC-AACTTCAGAGAGATAGGATTGATTTC
1 TTCT-GTCTGCTCCACTACTGA-TTAAG-GAGATAAGACTG--TGG
26827310 TTCTGTCTGCTCCACTACTGATTAAGGAGATAAGACCTGTGG
1 TTCTGTCTGCTCCACTACTGATTAAGGAGATAAGA-CTGTGG
* *
26827352 TTCTGTCTGCTCCACTACTGCTTAGGGAGATAA
1 TTCTGTCTGCTCCACTACTGATTAAGGAGATAA
26827385 AACTTGAGGC
Statistics
Matches: 91, Mismatches: 22, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
42 36 0.40
43 24 0.26
44 25 0.27
45 6 0.07
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (41 bp):
TTCTGTCTGCTCCACTACTGATTAAGGAGATAAGACTGTGG
Found at i:26827573 original size:132 final size:132
Alignment explanation
Indices: 26827396--26828713 Score: 2109
Period size: 132 Copynumber: 10.0 Consensus size: 132
26827386 ACTTGAGGCA
* * * ** * *
26827396 ATCTACTCAACTACTGCTTAGGGAGATAAGATCAGTGGT-TCTCAATCTATTCCATTGCTGCCGA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT-TCAATCTATTCCACTGCTGCCCA
* * ** *
26827460 GGGAGATAAAACTA-TCAGCTTCAATGTACTCCACTGTAATTTCAGGGAGGTAAAATCCGCCATC
65 GGGAGATAGAACTACT-GGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATC
26827524 TTCG
129 TTCG
* * *
26827528 ACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
** ** *
26827593 GGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAATCTCAGGAAGGTAAAATCCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26827658 CG
131 CG
* * * *
26827660 ACCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTACCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* *
26827725 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAAGGAGGTAAAATTCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26827790 CG
131 CG
* *
26827792 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCTCTGCTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* *
26827857 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAAGGAGGTAAAATTCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26827922 CG
131 CG
*
26827924 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* * *
26827989 GGAGATAGAACTACTGGCTTCAATGTACTCCATCATAATCTCAAGGAGGTAAAATTCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828054 CG
131 CG
* *
26828056 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCTCTGCTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* *
26828121 GGAGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCTCAGGGAAGTAAAATCCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828186 CG
131 CG
26828188 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
26828253 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828318 CG
131 CG
* * *
26828320 ACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCTACCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* *
26828385 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCTGTCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828450 CG
131 CG
*
26828452 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* ** *
26828517 GGAGATAGAACTACAGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828582 CG
131 CG
* * *
26828584 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCAACTGTTGCCCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
** * *
26828649 GGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
66 GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
26828714 GAATCTTTTA
Statistics
Matches: 1121, Mismatches: 63, Indels: 4
0.94 0.05 0.00
Matches are distributed among these distances:
132 1120 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (132 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
GGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCTCAGGGAGGTAAAATCCGCCATCTT
CG
Found at i:26827627 original size:43 final size:43
Alignment explanation
Indices: 26827567--26828696 Score: 136
Period size: 44 Copynumber: 25.7 Consensus size: 43
26827557 GATCTGTAAT
*
26827567 CTTCAATCTATTCCACTGCTACCCAGGGAGATAGAACTACCAG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * * ** *
26827610 CTTCAATGTACTCCACTG-TAATCTCAGGAAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCT-A-CCCAGGGAGATAGAA-CTACCAG
* * * * ** * *** *
26827655 CTTCGACCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * **
26827699 CTTCAATCTATTCCTCTGCTACCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * * * * *
26827742 CTTCAATGTACTCCAC--CATAATCTCAAGGAGGTAAAATTCGCCAT
1 CTTCAATCTACTCCACTGC-T-A-CCCAGGGAGATAGAACT-ACCAG
* * * * ** * ** *
26827787 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * * **
26827831 CTTCAATCTATTCCTCTGCTGCCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * * * * *
26827874 CTTCAATGTACTCCAC--CATAATCTCAAGGAGGTAAAATTCGCCAT
1 CTTCAATCTACTCCACTGC-T-A-CCCAGGGAGATAGAACT-ACCAG
* * * * ** * * *
26827919 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA-AAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACT-ACCAG
* * **
26827963 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * * * * *
26828006 CTTCAATGTACTCCA-T-CATAATCTCAAGGAGGTAAAATTCGCCAT
1 CTTCAATCTACTCCACTGC-T-A-CCCAGGGAGATAGAACT-ACCAG
* * * * ** * * *
26828051 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA-AAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACT-ACCAG
* * * **
26828095 CTTCAATCTATTCCTCTGCTGCCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * ** *
26828138 CTTCAATGTACTCCACCG-TAATCTCAGGGA-AGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCT-A-CCCAGGGAGA-TAGAA-CTACCAG
* * * * ** * *** *
26828183 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * **
26828227 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * ** *
26828270 CTTCAATGTACTCCAC--CATAATCTCAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGC-T-A-CCCAGGGAGATAGAA-CTACCAG
* * * * * ** * *** *
26828315 CTTCGACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * **
26828359 CTTCAATCTATTCCTCTGCTACCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
* * * * ** *
26828402 CTTCAATGTACTCCAC--CATAATCTCAGGGAGGTAAAATCTGTCAT
1 CTTCAATCTACTCCACTGC-T-A-CCCAGGGAGATAGAA-CTACCAG
* * * * ** * *** *
26828447 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * *
26828491 ATTCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTA-CAGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCA-G
* * * * * *
26828534 CTTCAATGTACTCCACTG-TAATCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCT-A-CCCAGGGAGATAGAA-CTACCAG
* * * ** * *** *
26828579 CTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTGCTACCCAGGGAGAT-AGAACTACCAG
* * * * **
26828623 CTTCAATCTATTCAACTGTTGCCCAGGGAGATAGAACTACTGG
1 CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
*
26828666 CTTCAATGTACTCCACTG-TAACCACAGGGAG
1 CTTCAATCTACTCCACTGCT-ACC-CAGGGAG
26828697 GTAAAATCCG
Statistics
Matches: 741, Mismatches: 288, Indels: 115
0.65 0.25 0.10
Matches are distributed among these distances:
41 5 0.01
42 13 0.02
43 173 0.23
44 394 0.53
45 140 0.19
46 11 0.01
47 5 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTACCCAGGGAGATAGAACTACCAG
Found at i:26828594 original size:88 final size:88
Alignment explanation
Indices: 26827437--26828598 Score: 268
Period size: 88 Copynumber: 13.2 Consensus size: 88
26827427 TCAGTGGTTC
* * * * * * *
26827437 TCAATCTATTCCATTGCTGCCGAGGGAGATAAAACTATCA-GCTTCAATGTACTCCACTGTAATT
1 TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTA-CAGGCTTCAATCTACTCCACTGTAATC
* *
26827501 TCAGGGAGGTAAAATCCGCCATCT
65 TCAGGGAGATAAAATCTGCCATCT
* * * * ** * ** ** *
26827525 TCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT-A-
1 TCAATCTACTCCACTACTGCCCAGGGAGAT-AGAACTACAGGCTTCAATCTACTCCACTG-TAAT
* * * *
26827588 CCCAGGGAGATAGAA-CTACCAGCT
64 CTCAGGGAGATAAAATCTGCCATCT
* * * * * * ** * * *
26827612 TCAATGTACTCCACTGTAAT-CTCAGGAAGGTAAAATCCGCCA-TCTTCGACCTACTCCAC--TA
1 TCAATCTACTCCAC--TACTGCCCAGGGAGATAGAA--CTACAGGCTTCAATCTACTCCACTGTA
* * * **
26827673 CTGCTTAGGGAGATAAGATCTGTAATCT
62 AT-CTCAGGGAGATAAAATCTGCCATCT
* * * * * * **
26827701 TCAATCTATTCCTCTGCTACCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCT
1 TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTACAGGCTTCAATCTACTCCACTGTAATCT
* *
26827766 CAAGGAGGTAAAAT-TCGCCATCT
66 CAGGGAGATAAAATCT-GCCATCT
* * ** * * ** * * *
26827789 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCTCTGCT--G
1 TCAATCTACTCCACTACTGCCCAGGGAGAT-AGAACTACAGGCTTCAATCTACTCCACTG-TAAT
* * * ***
26827852 CCCAGGGAGATAGAA-CTACTGGCT
64 CTCAGGGAGATAAAATCTGCCATCT
* * * * * * ** * * *
26827876 TCAATGTACTCCACCATAAT-CTCAAGGAGGTAAAATTCGCCA-TCTTCGATCTGCTCCAC--TA
1 TCAATCTACTCCA-C-TACTGCCCAGGGAGATAGAA--CTACAGGCTTCAATCTACTCCACTGTA
* * * **
26827937 CTGCTTAGGGAGATAAGATCTGAAATCT
62 AT-CTCAGGGAGATAAAATCTGCCATCT
* * * * *
26827965 TCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCA-TCATAATC
1 TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTACAGGCTTCAATCTACTCCACT-GTAATC
* *
26828029 TCAAGGAGGTAAAAT-TCGCCATCT
65 TCAGGGAGATAAAATCT-GCCATCT
* * ** * ** * *
26828053 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGA-AATCTTCAATCTATTCCTCTGCT--
1 TCAATCTACTCCACTACTGCCCAGGGAGAT-AGAACT-ACAGGCTTCAATCTACTCCACTG-TAA
* * * * ***
26828115 GCCCAGGGAGATAGAA-CTACTGGCT
63 TCTCAGGGAGATAAAATCTGCCATCT
* * * * ** * * *
26828140 TCAATGTACTCCACCGTAAT-CTCAGGGA-AGTAAAATCCGCCA-TCTTCGATCTGCTCCAC--T
1 TCAATCTACTCCA-C-TACTGCCCAGGGAGA-TAGAA--CTACAGGCTTCAATCTACTCCACTGT
* * * **
26828200 ACTGCTTAGGGAGATAAGATCTGTAATCT
61 AAT-CTCAGGGAGATAAAATCTGCCATCT
* * * * **
26828229 TCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACCATAATCT
1 TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTACAGGCTTCAATCTACTCCACTGTAATCT
* *
26828294 CAGGGAGGTAAAATCCGCCATCT
66 CAGGGAGATAAAATCTGCCATCT
* * * ** * ** ** * *
26828317 TCGACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCTCTGCT-A-
1 TCAATCTACTCCACTACTGCCCAGGGAGAT-AGAACTACAGGCTTCAATCTACTCCACTG-TAAT
* * * ***
26828380 CCCAGGGAGATAGAA-CTACTGGCT
64 CTCAGGGAGATAAAATCTGCCATCT
* * * * * * * * *
26828404 TCAATGTACTCCACCATAAT-CTCAGGGAGGTAAAATCTGTCA-TCTTCGATCTGCTCCAC--TA
1 TCAATCTACTCCA-C-TACTGCCCAGGGAGATAGAA-CT-ACAGGCTTCAATCTACTCCACTGTA
* * * ** *
26828465 CTGCTTAGGGAGATAAGATCTGTAATAT
62 AT-CTCAGGGAGATAAAATCTGCCATCT
* * *
26828493 TCAATCTATTCCACTGCTGCCCAGGGAGATAGAACTACAGGCTTCAATGTACTCCACTGTAATCT
1 TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTACAGGCTTCAATCTACTCCACTGTAATCT
*
26828558 CAGGGAGGTAAAATCTGCCATCT
66 CAGGGAGATAAAATCTGCCATCT
* *
26828581 TCGATCTGCTCCACTACT
1 TCAATCTACTCCACTACT
26828599 ACTTAGGGAG
Statistics
Matches: 720, Mismatches: 287, Indels: 134
0.63 0.25 0.12
Matches are distributed among these distances:
85 4 0.01
86 8 0.01
87 127 0.18
88 407 0.57
89 168 0.23
90 6 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (88 bp):
TCAATCTACTCCACTACTGCCCAGGGAGATAGAACTACAGGCTTCAATCTACTCCACTGTAATCT
CAGGGAGATAAAATCTGCCATCT
Found at i:26828769 original size:50 final size:50
Alignment explanation
Indices: 26828715--26828869 Score: 247
Period size: 50 Copynumber: 3.1 Consensus size: 50
26828705 CGCCATCTTG
* * * *
26828715 AATCTTTTAAATTGCACTGTCAGGGAAGTAAGATTCACCGTCGTAGCTTT
1 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
* * *
26828765 AATCTTTTAAATTGCAATATCAAGGAAGCAAGATTTGTCGTCGTAGCTTT
1 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
26828815 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
1 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
26828865 AATCT
1 AATCT
26828870 GCTCTACTGT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 95 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (50 bp):
AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
Found at i:26828899 original size:100 final size:98
Alignment explanation
Indices: 26828715--26829267 Score: 470
Period size: 100 Copynumber: 5.6 Consensus size: 98
26828705 CGCCATCTTG
* * * * ** ** * *
26828715 AATCTTTTAAATTGCACTGTCAGGGAAGTAAGATTCACCGTCGTAGCTTTAATCTTTTAAATTGC
1 AATCTTTT-AATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGT
* ** * * * * *
26828780 AATATCAAGGAAGCAAGATTTGTCGTCGTAGCTTT
65 ACTCCCAA-GAAGTAAGATTCGTCGTTGTGGCTTC
*
26828815 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGT
1 AATCTTTT-AATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGT
* **
26828880 ACTCCCAGAGAAGTGAGATTCACCGTTGTGGCTTC
65 ACTCCCA-AGAAGTAAGATTCGTCGTTGTGGCTTC
* * * * * * * *
26828915 AATCTCTTTAATTGCAAT-GCCGAGGAA-TAAGATTCGCTGTTGTTGCTTCAATCTGATCCACTG
1 AATCT-TTTAATTGCAATATCAG-GGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTG
* * * * *
26828978 CA-TCGCCAAGAAAATAAGATTAGCCGTTGCGGCTTC
64 TACTC-CCAAG-AAGTAAGATTCGTCGTTGTGGCTTC
* * **
26829014 AATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCACCGTCGTAGCTATAATCTGCTGGACTGT
1 AATC-TTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGT
* * *
26829079 ACT-GCAAGGGAAGTGAGATTCATCGTTGTGGCTTC
65 ACTCCCAA--GAAGTAAGATTCGTCGTTGTGGCTTC
* * * * * *
26829114 AATCTCTTTAATTGCAATGTC-GGGAAACAAGATTCGCTGTTGTAGCTTCAATCTGATCCACTGT
1 AATCT-TTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGT
*
26829178 A-TCGCCAAGAAAGTAAGATTCGTCGTTGCGGCTTC
65 ACTC-CCAAG-AAGTAAGATTCGTCGTTGTGGCTTC
**
26829213 AATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTTATAGCTTTAATCT
1 AATC-TTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCT
26829268 ACTATACTGT
Statistics
Matches: 361, Mismatches: 75, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
98 6 0.02
99 154 0.43
100 195 0.54
101 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (98 bp):
AATCTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTA
CTCCCAAGAAGTAAGATTCGTCGTTGTGGCTTC
Found at i:26828998 original size:99 final size:99
Alignment explanation
Indices: 26828810--26829267 Score: 416
Period size: 99 Copynumber: 4.6 Consensus size: 99
26828800 TGTCGTCGTA
* * * * * *
26828810 GCTTTAATCT-TTTAAATTGCAATATC-AGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCT
1 GCTTCAATCTCTTT-AATTGCAATGTCGA-GGAA-CAAGATTCGCTGTTGTAGCTTCAATCTGAT
* * *
26828873 CTACTGTACTC-CC-AGAGAAGTGAGATTCACCGTTGTG
63 CCACTGTA-TCGCCAAGA-AAGTAAGATTCACCGTTGCG
* * *
26828910 GCTTCAATCTCTTTAATTGCAATGCCGAGGAATAAGATTCGCTGTTGTTGCTTCAATCTGATCCA
1 GCTTCAATCTCTTTAATTGCAATGTCGAGGAACAAGATTCGCTGTTGTAGCTTCAATCTGATCCA
* *
26828975 CTGCATCGCCAAGAAAATAAGATT-AGCCGTTGCG
66 CTGTATCGCCAAGAAAGTAAGATTCA-CCGTTGCG
* * * * * *
26829009 GCTTCAATCTTTTTAATTGCAATATC-AGGGAAGCAAGATTCACCGTCGTAGCTAT-AATCTGCT
1 GCTTCAATCTCTTTAATTGCAATGTCGA-GGAA-CAAGATTCGCTGTTGTAGCT-TCAATCTGAT
** * * * *
26829072 GGACTGTA-CTG-CAAGGGAAGTGAGATTCATCGTTGTG
63 CCACTGTATC-GCCAA-GAAAGTAAGATTCACCGTTGCG
26829109 GCTTCAATCTCTTTAATTGCAATGTCG-GGAAACAAGATTCGCTGTTGTAGCTTCAATCTGATCC
1 GCTTCAATCTCTTTAATTGCAATGTCGAGG-AACAAGATTCGCTGTTGTAGCTTCAATCTGATCC
**
26829173 ACTGTATCGCCAAGAAAGTAAGATTCGTCGTTGCG
65 ACTGTATCGCCAAGAAAGTAAGATTCACCGTTGCG
* * * * *
26829208 GCTTCAATCTTTTTAATTGCAATATC-AGGGAAGCAAGATTCGCCGTTATAGCTTTAATCT
1 GCTTCAATCTCTTTAATTGCAATGTCGA-GGAA-CAAGATTCGCTGTTGTAGCTTCAATCT
26829268 ACTATACTGT
Statistics
Matches: 291, Mismatches: 48, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
98 5 0.02
99 155 0.53
100 125 0.43
101 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (99 bp):
GCTTCAATCTCTTTAATTGCAATGTCGAGGAACAAGATTCGCTGTTGTAGCTTCAATCTGATCCA
CTGTATCGCCAAGAAAGTAAGATTCACCGTTGCG
Found at i:26829047 original size:50 final size:50
Alignment explanation
Indices: 26828715--26829267 Score: 194
Period size: 50 Copynumber: 11.1 Consensus size: 50
26828705 CGCCATCTTG
* * * * *
26828715 AATCTTTTAAATTGCACTGTCAGGGAAGTAAGATTCA-CCGTCGTAGCTTT
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATT-AGCCGTTGTAGCTTC
* * * * * * *
26828765 AATCTTTTAAATTGCAATATCAAGGAAGCAAGATTTGTCGTCGTAGCTTT
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
* * * * *
26828815 AATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTT
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
* * * * * ** * * *
26828865 AATCTGCTCT-ACTGTACTCCCAGAGAAGTGAGATTCA-CCGTTGTGGCTTC
1 AATCT-TTTTAATTGCAATATCAGGGAAGTAAGATT-AGCCGTTGTAGCTTC
* * * * * *
26828915 AATCTCTTTAATTGCAAT-GCCGAGGAA-TAAGATTCGCTGTTGTTGCTTC
1 AATCTTTTTAATTGCAATATCAG-GGAAGTAAGATTAGCCGTTGTAGCTTC
** ** * ** * * * **
26828964 AATCTGATCCACTGC-ATCGCCAAGAAAATAAGATTAGCCGTTGCGGCTTC
1 AATCTTTTTAATTGCAAT-ATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
* *
26829014 AATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCA-CCGTCGTAGCTAT-
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATT-AGCCGTTGTAGCT-TC
** ** * * * * * * *
26829064 AATCTGCTGGACTGTACT-GCAAGGGAAGTGAGATTCA-TCGTTGTGGCTTC
1 AATCTTTTTAATTGCAATATC-AGGGAAGTAAGATT-AGCCGTTGTAGCTTC
* * ** * *
26829114 AATCTCTTTAATTGCAATGTC-GGGAAACAAGATTCGCTGTTGTAGCTTC
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
** ** * * ** * * * * **
26829163 AATCTGATCCACTG-TATCGCCAAGAAAGTAAGATTCGTCGTTGCGGCTTC
1 AATCTTTTTAATTGCAAT-ATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
* * * *
26829213 AATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTTATAGCTTT
1 AATCTTTTTAATTGCAATATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
26829263 AATCT
1 AATCT
26829268 ACTATACTGT
Statistics
Matches: 363, Mismatches: 121, Indels: 38
0.70 0.23 0.07
Matches are distributed among these distances:
48 4 0.01
49 68 0.19
50 283 0.78
51 8 0.02
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
AATCTTTTTAATTGCAATATCAGGGAAGTAAGATTAGCCGTTGTAGCTTC
Found at i:26829094 original size:199 final size:199
Alignment explanation
Indices: 26828810--26829291 Score: 759
Period size: 199 Copynumber: 2.4 Consensus size: 199
26828800 TGTCGTCGTA
* * *
26828810 GCTTTAATCTTTTAAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCT
1 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTAT
* * *
26828875 ACTGTACTCCCAGAGAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTTAATTGCAATGCCGAGG
66 ACTGTACTGCAAGGGAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTTAATTGCAATGCCG-GG
* *
26828940 -AATAAGATTCGCTGTTGTTGCTTCAATCTGATCCACTGCATCGCCAAGAAAATAAGATTAGCCG
130 AAACAAGATTCGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAATAAGATTAGCCG
26829004 TTGCG
195 TTGCG
* * **
26829009 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCACCGTCGTAGCTATAATCTGCTGG
1 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTAT
* *
26829074 ACTGTACTGCAAGGGAAGTGAGATTCATCGTTGTGGCTTCAATCTCTTTAATTGCAATGTCGGGA
66 ACTGTACTGCAAGGGAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTTAATTGCAATGCCGGGA
* * * *
26829139 AACAAGATTCGCTGTTGTAGCTTCAATCTGATCCACTGTATCGCCAAGAAAGTAAGATTCGTCGT
131 AACAAGATTCGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAATAAGATTAGCCGT
26829204 TGCG
196 TGCG
** *
26829208 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTTATAGCTTTAATCTACTAT
1 GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTAT
26829273 ACTGTACTGCAAGGGAAGT
66 ACTGTACTGCAAGGGAAGT
26829292 TAACTTCATT
Statistics
Matches: 258, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
198 2 0.01
199 256 0.99
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (199 bp):
GCTTCAATCTTTTTAATTGCAATATCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTAT
ACTGTACTGCAAGGGAAGTGAGATTCACCGTTGTGGCTTCAATCTCTTTAATTGCAATGCCGGGA
AACAAGATTCGCTGTTGTAGCTTCAATCTGATCCACTGCATCGCCAAGAAAATAAGATTAGCCGT
TGCG
Found at i:26830174 original size:12 final size:12
Alignment explanation
Indices: 26830159--26830191 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26830149 TTTGTTATTC
*
26830159 TTTTCTTTTCTT
1 TTTTCTTTTCGT
26830171 TTTTCTTTTCGT
1 TTTTCTTTTCGT
26830183 TTTT-TTTTC
1 TTTTCTTTTC
26830192 AAGTGAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTCGT
Found at i:26830189 original size:17 final size:16
Alignment explanation
Indices: 26830142--26830191 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
26830132 GGCCTCTCCT
*
26830142 TTTTCTTTTTGTTATTC
1 TTTTCTTTTT-TTTTTC
26830159 TTTTCTTTTCTTTTTTC
1 TTTTCTTTT-TTTTTTC
*
26830176 TTTTCGTTTTTTTTTC
1 TTTTCTTTTTTTTTTC
26830192 AAGTGAAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 7 0.23
17 22 0.73
18 1 0.03
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTTTTTTC
Found at i:26834088 original size:35 final size:36
Alignment explanation
Indices: 26834011--26834088 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
26834001 TGAACACACA
*
26834011 TATATATATAAAGTATATAAATAATACATAAGTATG
1 TATATATATAAAGTAAATAAATAATACATAAGTATG
** *
26834047 TATATATATAAA-TAAATTAAA-AATATGTACGTATG
1 TATATATATAAAGTAAA-TAAATAATACATAAGTATG
26834082 TATATAT
1 TATATAT
26834089 TTATATAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 21 0.57
36 16 0.43
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (36 bp):
TATATATATAAAGTAAATAAATAATACATAAGTATG
Found at i:26834111 original size:30 final size:28
Alignment explanation
Indices: 26834071--26834130 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
26834061 AATTAAAAAT
* *
26834071 ATGTACGTATGTATATATTTATATAACAAA
1 ATGTACGTATGTACATA--TATACAACAAA
*
26834101 ATGTATGTATGTACATATATACAACAAA
1 ATGTACGTATGTACATATATACAACAAA
26834129 AT
1 AT
26834131 TTGAAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
30 15 0.56
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (28 bp):
ATGTACGTATGTACATATATACAACAAA
Found at i:26834990 original size:5 final size:6
Alignment explanation
Indices: 26834937--26834993 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
26834927 GAAAAAAAGG
* * ** *
26834937 TAAAAA TAAAAA TAAAAAA TAAGAA TAAATA TGTACA TAAAAA TAAAAA
1 TAAAAA TAAAAA T-AAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
26834986 TAAAAA TA
1 TAAAAA TA
26834994 GAGAGAGAAG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 35 0.85
7 6 0.15
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:26836914 original size:14 final size:14
Alignment explanation
Indices: 26836869--26836921 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
26836859 ACTAATTAAG
*
26836869 ATTAAGGTTTGGTTA
1 ATTAA-GTTTGATTA
*
26836884 ATTAAAGTTTAATTA
1 ATT-AAGTTTGATTA
*
26836899 ATTAATTTTGATTA
1 ATTAAGTTTGATTA
26836913 ATTAAGTTT
1 ATTAAGTTT
26836922 AATCAAAAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
14 17 0.53
15 13 0.41
16 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (14 bp):
ATTAAGTTTGATTA
Found at i:26845125 original size:35 final size:35
Alignment explanation
Indices: 26845086--26845157 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
26845076 TACTCTTTGT
*
26845086 TTGGCATGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGCATGTTTCGGTTAGACTAGCTCTTATGAGCA
*
26845121 TTGGCATGTTTCGGTTAGACTAGCTCTTGTGAGCA
1 TTGGCATGTTTCGGTTAGACTAGCTCTTATGAGCA
26845156 TT
1 TT
26845158 TGGTGTGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.39
Consensus pattern (35 bp):
TTGGCATGTTTCGGTTAGACTAGCTCTTATGAGCA
Found at i:26846432 original size:21 final size:20
Alignment explanation
Indices: 26846404--26846445 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
26846394 AAATTAGTCA
*
26846404 TTTTATGCATGT-TTGAAATG
1 TTTTATGC-TGTGTTCAAATG
26846424 TTTTGATGCTGTGTTCAAATG
1 TTTT-ATGCTGTGTTCAAATG
26846445 T
1 T
26846446 ACAAATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (20 bp):
TTTTATGCTGTGTTCAAATG
Found at i:26847882 original size:19 final size:19
Alignment explanation
Indices: 26847858--26847897 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26847848 AAGAGCATAT
26847858 CTGGCACACGAGGTGCATC
1 CTGGCACACGAGGTGCATC
***
26847877 CTGGCATGTGAGGTGCATC
1 CTGGCACACGAGGTGCATC
26847896 CT
1 CT
26847898 AGCGCATAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (19 bp):
CTGGCACACGAGGTGCATC
Found at i:26848955 original size:14 final size:15
Alignment explanation
Indices: 26848925--26848957 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26848915 ATATATATAC
26848925 TTAAATTAATCTTAA
1 TTAAATTAATCTTAA
*
26848940 TTAAATTTAT-TTAA
1 TTAAATTAATCTTAA
26848954 TTAA
1 TTAA
26848958 CGAAATTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAAATTAATCTTAA
Found at i:26849551 original size:22 final size:23
Alignment explanation
Indices: 26849509--26849552 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
26849499 TCGTTGAATT
26849509 TTTTTCTTTGAGAATTCTTTTAA
1 TTTTTCTTTGAGAATTCTTTTAA
*
26849532 TTTTT-TTT-AGAAGTTGTTTTA
1 TTTTTCTTTGAGAA-TTCTTTTA
26849553 GCAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 10 0.53
23 5 0.26
ACGTcount: A:0.20, C:0.05, G:0.11, T:0.64
Consensus pattern (23 bp):
TTTTTCTTTGAGAATTCTTTTAA
Found at i:26866798 original size:44 final size:44
Alignment explanation
Indices: 26866739--26866918 Score: 146
Period size: 44 Copynumber: 4.1 Consensus size: 44
26866729 AAGTAGGTTG
* * *
26866739 AAAGATAACATATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGCGTGAAGCAGATC
* * * *** * *
26866783 AGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGG-CGTGAAGCAGATC
* * * * * *
26866828 AAAGAAAACAGATCTTGTTTTCATGTACTAGTGTAAAACAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACTGGCGTGAAGCAGATC
** * *
26866872 AAAGATAGTAGGTCTTGTCTTCATGTA-TCGGCGTGAAGAAGATC
1 AAAGATAACAGATCTTGTCTTCATGTACT-GGCGTGAAGCAGATC
26866916 AAA
1 AAA
26866919 TACAACATAT
Statistics
Matches: 100, Mismatches: 34, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
43 1 0.01
44 67 0.67
45 32 0.32
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (44 bp):
AAAGATAACAGATCTTGTCTTCATGTACTGGCGTGAAGCAGATC
Found at i:26867152 original size:44 final size:45
Alignment explanation
Indices: 26867089--26867182 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 45
26867079 CAGTGGAATC
**
26867089 GATCGGAAAAAGCAGATCTTGTCTTCATGTATTGGT-GTGAAGTA
1 GATCGGAAAAAGCAGATCTTGTCTTCACATATTGGTGGTGAAGTA
*
26867133 GATCGGAAAAAGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTA
1 GATCGGAAAAAGCAGATCTTGTCTTCACATATTGGTGGTGAAGTA
26867178 GATCG
1 GATCG
26867183 AAGATACAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 33 0.72
45 13 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (45 bp):
GATCGGAAAAAGCAGATCTTGTCTTCACATATTGGTGGTGAAGTA
Found at i:26869966 original size:89 final size:89
Alignment explanation
Indices: 26869824--26869988 Score: 251
Period size: 89 Copynumber: 1.9 Consensus size: 89
26869814 TCTGTTGAAA
* * * * *
26869824 TATTGAAACAAACTAGTGTTATTGCGATATTTGGTTGTACAAAACTAGTTGAAAGCTCTAG-ATG
1 TATTGAAACAAACCAATATTATTGCAATATTTGGTTATACAAAACTAGTTGAAAGCTCTAGAAT-
*
26869888 AGCTAATATATCGTACCTGTTGTGG
65 AACTAATATATCGTACCTGTTGTGG
*
26869913 TATTGAAACAAACCAATATTATTGCAATATTTGGTTATACAAGACTAGTTGAAAGCTCTAGAATA
1 TATTGAAACAAACCAATATTATTGCAATATTTGGTTATACAAAACTAGTTGAAAGCTCTAGAATA
26869978 ACTAATATATC
66 ACTAATATATC
26869989 AATATCTGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
89 66 0.97
90 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (89 bp):
TATTGAAACAAACCAATATTATTGCAATATTTGGTTATACAAAACTAGTTGAAAGCTCTAGAATA
ACTAATATATCGTACCTGTTGTGG
Found at i:26880284 original size:45 final size:44
Alignment explanation
Indices: 26880220--26880474 Score: 192
Period size: 45 Copynumber: 5.6 Consensus size: 44
26880210 TGAAGGATGC
*
26880220 CATAGTGTCTTTCAACCATGGTCTTATTCATTCTCGTCTTAATGT
1 CATAGTGTCTTTCAACCATGGTCTTATTCATT-TCGTCATAATGT
* * *
26880265 CATAGTGTCTTTCAACCATGGTCTTATACATTT-TTACATCATATTT
1 CATAGTGTCTTTCAACCATGGTCTTATTCATTTCGT-CAT-A-ATGT
* * ** *
26880311 CCATAGTGTCTTTCAACCATTGTCTTATTCGTTTAATTCATGATGT
1 -CATAGTGTCTTTCAACCATGGTCTTATTCATTT-CGTCATAATGT
** * * * *
26880357 CATAGCATCTTTCAACTATGGTCTTATTCGTTTTCGGT-ATGATGC
1 CATAGTGTCTTTCAACCATGGTCTTATTC-ATTTC-GTCATAATGT
* * * * * *
26880402 CATAGTGTCTCTCAACTATAGTCTTATTTAGTTTCGAT-ATAGTGC
1 CATAGTGTCTTTCAACCATGGTCTTATTCA-TTTCG-TCATAATGT
* *
26880447 CATAGTATCTTTCAACTATGGTCTTATT
1 CATAGTGTCTTTCAACCATGGTCTTATT
26880475 TGTTTCCTTC
Statistics
Matches: 172, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.02
45 122 0.71
46 10 0.06
47 30 0.17
48 3 0.02
49 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (44 bp):
CATAGTGTCTTTCAACCATGGTCTTATTCATTTCGTCATAATGT
Found at i:26887617 original size:27 final size:27
Alignment explanation
Indices: 26887587--26887639 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
26887577 GCATGTTTCT
26887587 TTCTCTTTTGTTACCTTTTTC-CCTTTG
1 TTCT-TTTTGTTACCTTTTTCTCCTTTG
* *
26887614 TTCTTTTTGTTTCTTTTTTCTCCTTT
1 TTCTTTTTGTTACCTTTTTCTCCTTT
26887640 CTTTTGCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.02, C:0.23, G:0.06, T:0.70
Consensus pattern (27 bp):
TTCTTTTTGTTACCTTTTTCTCCTTTG
Found at i:26889613 original size:18 final size:20
Alignment explanation
Indices: 26889576--26889613 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26889566 GTAAAATTGT
26889576 TTAGGATGTGTTTTCAGAAA
1 TTAGGATGTGTTTTCAGAAA
*
26889596 TTAGTATGT-TTTTC-GAAA
1 TTAGGATGTGTTTTCAGAAA
26889614 AAGTTATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (20 bp):
TTAGGATGTGTTTTCAGAAA
Found at i:26895419 original size:41 final size:41
Alignment explanation
Indices: 26895363--26895448 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
26895353 AAAATGCTCT
* *
26895363 TTTTGAATGTTTATTTGGATGCTTTTAGTTTTCTTGTAAAC
1 TTTTGAATGCTTATTTGGATGCTTTTAGTTTGCTTGTAAAC
26895404 TTTTGAATGCTTATTTGGATGCTTTTAGTTTGCTTGTAAAC
1 TTTTGAATGCTTATTTGGATGCTTTTAGTTTGCTTGTAAAC
26895445 TTTT
1 TTTT
26895449 AGGTAATTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.19, C:0.08, G:0.17, T:0.56
Consensus pattern (41 bp):
TTTTGAATGCTTATTTGGATGCTTTTAGTTTGCTTGTAAAC
Found at i:26897926 original size:85 final size:85
Alignment explanation
Indices: 26897837--26898073 Score: 296
Period size: 85 Copynumber: 2.8 Consensus size: 85
26897827 AGTGGTGTGA
** * * *
26897837 GAGCCTTGAGCACCATCGGCACCTTAATGCTAGGATGTGCAGAAGCCTCAGACACCATCGATAAC
1 GAGCCTTGAGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCAGACACCATCGGTAAC
* *
26897902 CTAGGCCCTTGGTCGTGCGG
66 CTAGGCCCTTGGTCATGCAG
* * * * * * *
26897922 GAGCCTCGAGTAGCATCGACGCCTTGGTGCTTGGATGTGCGGGTGCCTCAGACACCATCGGTAAC
1 GAGCCTTGAGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCAGACACCATCGGTAAC
26897987 CTAGGCCCTTGGTCATGCAG
66 CTAGGCCCTTGGTCATGCAG
* * * *
26898007 GAGCCTTGGGCACCATCGGTACCTTGGTGCTTA-GATGTACGGGAGCCTCGGACACCATCGGTAA
1 GAGCCTTGAGCACCATCGGCACCTTGGTGC-TAGGATGTGCGGGAGCCTCAGACACCATCGGTAA
26898071 CCT
65 CCT
26898074 GGAGCAGTGC
Statistics
Matches: 126, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
85 125 0.99
86 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (85 bp):
GAGCCTTGAGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCAGACACCATCGGTAAC
CTAGGCCCTTGGTCATGCAG
Found at i:26898063 original size:42 final size:41
Alignment explanation
Indices: 26897943--26898069 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 41
26897933 AGCATCGACG
* *
26897943 CCTTGGTGCTTGGATGTGCGGGTGCCTCAGACACCATCGGTAA
1 CCTTGGTGCTTGGATGT-CGGGAGCCTCGGACACCATCGGT-A
* ** * * *
26897986 CCTAGGCCCTTGGTCATG-CAGGAGCCTTGGGCACCATCGGTA
1 CCTTGGTGCTTGG--ATGTCGGGAGCCTCGGACACCATCGGTA
*
26898028 CCTTGGTGCTTAGATGTACGGGAGCCTCGGACACCATCGGTA
1 CCTTGGTGCTTGGATGT-CGGGAGCCTCGGACACCATCGGTA
26898070 ACCTGGAGCA
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
40 3 0.05
42 31 0.48
43 28 0.43
45 3 0.05
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (41 bp):
CCTTGGTGCTTGGATGTCGGGAGCCTCGGACACCATCGGTA
Found at i:26912189 original size:18 final size:19
Alignment explanation
Indices: 26912166--26912201 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
26912156 TTTAAAGAAG
26912166 GTTTAAAGG-TGGCAGATC
1 GTTTAAAGGTTGGCAGATC
26912184 GTTTAAAGGTTGGCAGAT
1 GTTTAAAGGTTGGCAGAT
26912202 TAATTGTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (19 bp):
GTTTAAAGGTTGGCAGATC
Found at i:26912965 original size:42 final size:42
Alignment explanation
Indices: 26912919--26913137 Score: 131
Period size: 42 Copynumber: 5.2 Consensus size: 42
26912909 AAGCCTCGAG
*
26912919 CACCATCAGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGGA
1 CACCATCAGAACCTTGGTGCTTGGATGTGCGGGAGCCTTGGA
* * ** * * *
26912961 CACCATCAGCAACATAGGCCCTTGG-TCGTGTGGGAGCTTTGGG
1 CACCATCAG-AACCTTGGTGCTTGGAT-GTGCGGGAGCCTTGGA
* * * * *
26913004 TAGCATC-GAAAACTTGGTGCTTGGATGTGCAGGAGCCTTGAA
1 CACCATCAG-AACCTTGGTGCTTGGATGTGCGGGAGCCTTGGA
* * ** *
26913046 CACCATCGATAACCTAGGCCCTTGG-TCGTGCGGGAG-CTTCGGG
1 CACCATC-AGAACCTTGGTGCTTGGAT-GTGCGGGAGCCTT-GGA
* * * * * * *
26913089 CACTATCGGTACCATGGTGCTTGGATATACGGGAGCCTCGGA
1 CACCATCAGAACCTTGGTGCTTGGATGTGCGGGAGCCTTGGA
26913131 CACCATC
1 CACCATC
26913138 GGTAACCTAG
Statistics
Matches: 124, Mismatches: 44, Indels: 18
0.67 0.24 0.10
Matches are distributed among these distances:
42 66 0.53
43 58 0.47
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (42 bp):
CACCATCAGAACCTTGGTGCTTGGATGTGCGGGAGCCTTGGA
Found at i:26913020 original size:85 final size:84
Alignment explanation
Indices: 26912931--26913157 Score: 285
Period size: 85 Copynumber: 2.7 Consensus size: 84
26912921 CCATCAGCAC
* * *
26912931 CTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATCAGCAACATAGGCCCTTGGTCGTGTGGGA
1 CTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATC-GTAACCTAGGCCCTTGGTCGTGCGGGA
* *
26912996 GCTTTGGGTAGC-ATCGAAAA
65 GCTTCGGGCA-CTATCGAAAA
* *
26913016 CTTGGTGCTTGGATGTGCAGGAGCCTTGAACACCATCGATAACCTAGGCCCTTGGTCGTGCGGGA
1 CTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATCG-TAACCTAGGCCCTTGGTCGTGCGGGA
** *
26913081 GCTTCGGGCACTATCGGTAC
65 GCTTCGGGCACTATCGAAAA
* * * *
26913101 CATGGTGCTTGGATATACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 CTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATC-GTAACCTAGGCCCTTGGTC
26913158 ATGCTGGAAA
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
84 2 0.02
85 120 0.98
86 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (84 bp):
CTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATCGTAACCTAGGCCCTTGGTCGTGCGGGAG
CTTCGGGCACTATCGAAAA
Found at i:26913043 original size:170 final size:170
Alignment explanation
Indices: 26912843--26913157 Score: 389
Period size: 170 Copynumber: 1.9 Consensus size: 170
26912833 GGCACCATTG
* * * * *
26912843 AAACTTGGTGCTTTGATGTGTGGAAGCCTTGGACACCATTGAAAACCTAGAAAATTGGTGGTACA
1 AAACTTGGTGCTTGGATGTGAGGAAGCCTTGAACACCATCGAAAACCTAGAAAATTGGTCGTACA
* * * *
26912908 GAAGCCTCGAGCACCATCAGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATCAGCAA
66 GAAGCCTCGAGCACCATCAGCACCATGGTGCTTGGATATACGGGAGCCTCGGACACCATCAGCAA
26912973 CATAGGCCCTTGGTCGTGTGGGAGCTTTGGGTAGCATCGA
131 CATAGGCCCTTGGTCGTGTGGGAGCTTTGGGTAGCATCGA
* **** *
26913013 AAACTTGGTGCTTGGATGTGCAGG-AGCCTTGAACACCATCGATAACCTAGGCCCTTGGTCGTGC
1 AAACTTGGTGCTTGGATGTG-AGGAAGCCTTGAACACCATCGAAAACCTAGAAAATTGGTCGTAC
* * * * * * * * *
26913077 GGGAGCTTCGGGCACTATCGGTACCATGGTGCTTGGATATACGGGAGCCTCGGACACCATCGGTA
65 AGAAGCCTCGAGCACCATCAGCACCATGGTGCTTGGATATACGGGAGCCTCGGACACCATCAGCA
*
26913142 ACCTAGGCCCTTGGTC
130 ACATAGGCCCTTGGTC
26913158 ATGCTGGAAA
Statistics
Matches: 119, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
170 117 0.98
171 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (170 bp):
AAACTTGGTGCTTGGATGTGAGGAAGCCTTGAACACCATCGAAAACCTAGAAAATTGGTCGTACA
GAAGCCTCGAGCACCATCAGCACCATGGTGCTTGGATATACGGGAGCCTCGGACACCATCAGCAA
CATAGGCCCTTGGTCGTGTGGGAGCTTTGGGTAGCATCGA
Found at i:26913082 original size:43 final size:42
Alignment explanation
Indices: 26912945--26913157 Score: 128
Period size: 43 Copynumber: 5.0 Consensus size: 42
26912935 GTGCTTGGAT
* *
26912945 GTGCGGGAGCCTTGGACACCATCAGCAACATAGGCCCTTGGTC
1 GTGCGGGAGCCTTGGACACCATC-GAAACCTAGGCCCTTGGTC
* * ** * * * **
26912988 GTGTGGGAGCTTTGGGTAGCATCGAAAACTTGGTGCTTGGAT-
1 GTGCGGGAGCCTTGGACACCATCGAAACCTAGGCCCTTGG-TC
* *
26913030 GTGCAGGAGCCTTGAACACCATCGATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTTGGACACCATCGA-AACCTAGGCCCTTGGTC
* * ** **
26913073 GTGCGGGAG-CTTCGGGCACTATCGGTACC-ATGGTGCTTGGAT-
1 GTGCGGGAGCCTT-GGACACCATCGAAACCTA-GGCCCTTGG-TC
* * * *
26913115 ATACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTTGGACACCATC-GAAACCTAGGCCCTTGGTC
26913158 ATGCTGGAAA
Statistics
Matches: 121, Mismatches: 39, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
41 1 0.01
42 59 0.49
43 60 0.50
44 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (42 bp):
GTGCGGGAGCCTTGGACACCATCGAAACCTAGGCCCTTGGTC
Found at i:26913176 original size:85 final size:85
Alignment explanation
Indices: 26913018--26913176 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
26913008 ATCGAAAACT
* * * * * *
26913018 TGGTGCTTGGATGTGCAGGAGCCTTGAACACCATCGATAACCTAGGCCCTTGGTCGTGCGGGAGC
1 TGGTGCTTGGATATACAGGAGCCTCGAACACCATCGATAACCTAGGCCCTTGGTCATGCGGAAAC
*
26913083 TTCGGGCACTATCGGTACCA
66 TTCAGGCACTATCGGTACCA
* * *
26913103 TGGTGCTTGGATATACGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCTGGAAA
1 TGGTGCTTGGATATACAGGAGCCTCGAACACCATCGATAACCTAGGCCCTTGGTCATGC-GGAAA
26913168 C-TCAGGCAC
65 CTTCAGGCAC
26913177 CATCAGCAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
85 59 0.94
86 4 0.06
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (85 bp):
TGGTGCTTGGATATACAGGAGCCTCGAACACCATCGATAACCTAGGCCCTTGGTCATGCGGAAAC
TTCAGGCACTATCGGTACCA
Found at i:26913224 original size:43 final size:43
Alignment explanation
Indices: 26913177--26913311 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 43
26913167 ACTCAGGCAC
* *
26913177 CATCAGCAGCCTAGGACGTTGGATGTGCGAGTGCCTTGAGCAG
1 CATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAG
* * * * * *
26913220 CATCAG-AACCCTAGTG-CTTTAGATGTGGGGGAGCCTCG-GACAC
1 CATCAGCAA-CCTAG-GACGTTGGATGTGCGAGTGCCTCGAG-CAG
* *
26913263 CATCGGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGTAG
1 CATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAG
26913306 CATCAG
1 CATCAG
26913312 TACCCTGGTG
Statistics
Matches: 69, Mismatches: 17, Indels: 12
0.70 0.17 0.12
Matches are distributed among these distances:
42 3 0.04
43 62 0.90
44 4 0.06
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (43 bp):
CATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAG
Found at i:26913285 original size:86 final size:86
Alignment explanation
Indices: 26913174--26913332 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 86
26913164 GAAACTCAGG
* * *
26913174 CACCATCAGCAGCCTAGGACGTTGGATGTGCGAGTGCCTTGAGCAGCATCAGAACCCTAGTGCTT
1 CACCATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAGCATCAGAACCCTAGTGCCT
*
26913239 TAGATGTGGGGGAGCCTCGGA
66 CAGATGTGGGGGAGCCTCGGA
* * * *
26913260 CACCATCGGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGTAGCATCAGTACCCTGGTGCCT
1 CACCATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAGCATCAGAACCCTAGTGCCT
26913325 CAGATGTG
66 CAGATGTG
26913333 CGGGCTAAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.21
Consensus pattern (86 bp):
CACCATCAGCAACCTAGGACGTTGGATGTGCGAGTGCCTCGAGCAGCATCAGAACCCTAGTGCCT
CAGATGTGGGGGAGCCTCGGA
Found at i:26913899 original size:52 final size:53
Alignment explanation
Indices: 26913811--26913915 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 53
26913801 TGATTTATGT
* * *
26913811 CTATTAAGTATGTTCTAATTCAGACAGCATCAATGCAGGTT-TTAAGTCAGAC
1 CTATTAACTATGCTCTAATTCAAACAGCATCAATGCAGGTTATTAAGTCAGAC
* * * *
26913863 CTATTAACTATGCTCTAGTTCAAACAGTATCAATGCATGTTATTAAGTTAGAC
1 CTATTAACTATGCTCTAATTCAAACAGCATCAATGCAGGTTATTAAGTCAGAC
26913916 TTCTTAATTG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 35 0.78
53 10 0.22
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (53 bp):
CTATTAACTATGCTCTAATTCAAACAGCATCAATGCAGGTTATTAAGTCAGAC
Found at i:26914316 original size:25 final size:25
Alignment explanation
Indices: 26914288--26914354 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
26914278 CTGACCATTT
26914288 CGTTTCAATTGATTTCACCACGCAC
1 CGTTTCAATTGATTTCACCACGCAC
26914313 CGTTTCAATTG-TTTCCACCACGCAC
1 CGTTTCAATTGATTT-CACCACGCAC
*
26914338 CGTTTTAATTGATTTCA
1 CGTTTCAATTGATTTCA
26914355 TAGATCCCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 3 0.08
25 33 0.85
26 3 0.08
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.37
Consensus pattern (25 bp):
CGTTTCAATTGATTTCACCACGCAC
Found at i:26919576 original size:22 final size:23
Alignment explanation
Indices: 26919547--26919589 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
26919537 TTAGAGGTGT
26919547 TACATTTAG-TGGTA-TCAGATC
1 TACATTTAGTTGGTACTCAGATC
26919568 TACAGTTTAGTTGGTACTCAGA
1 TACA-TTTAGTTGGTACTCAGA
26919590 CTGAATGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 5 0.26
23 5 0.26
24 5 0.26
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (23 bp):
TACATTTAGTTGGTACTCAGATC
Found at i:26921404 original size:13 final size:15
Alignment explanation
Indices: 26921386--26921424 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
26921376 GTTTTAGCTG
26921386 TTTGTTCCTTT-A-T
1 TTTGTTCCTTTCACT
26921399 TTTGTTCCTTTCACT
1 TTTGTTCCTTTCACT
*
26921414 TTTCTTCCTTT
1 TTTGTTCCTTT
26921425 TTTGGCTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 1 0.04
15 11 0.48
ACGTcount: A:0.05, C:0.23, G:0.05, T:0.67
Consensus pattern (15 bp):
TTTGTTCCTTTCACT
Found at i:26938591 original size:5 final size:5
Alignment explanation
Indices: 26938583--26938612 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
26938573 TTCTTTTTAG
26938583 AATTT AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT AATTT
26938613 TACTTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:26939635 original size:25 final size:25
Alignment explanation
Indices: 26939607--26939695 Score: 124
Period size: 25 Copynumber: 3.6 Consensus size: 25
26939597 TCATGTACAT
26939607 GTATGCTCACACGAGTTGTAAATCG
1 GTATGCTCACACGAGTTGTAAATCG
* * *
26939632 GTATGCTCTCACTAGTTATAAATCG
1 GTATGCTCACACGAGTTGTAAATCG
* * *
26939657 GTATGCACTCACGAGCTGTAAATCG
1 GTATGCTCACACGAGTTGTAAATCG
26939682 GTATGCTCACACGA
1 GTATGCTCACACGA
26939696 ACTATGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
GTATGCTCACACGAGTTGTAAATCG
Found at i:26942758 original size:45 final size:45
Alignment explanation
Indices: 26942687--26942775 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
26942677 AAATCACATA
* * *
26942687 AAATTCATCAAACAATCATAGCATCAAATTAACCAGAAAACTGTC
1 AAATTCATCAAACAATAATAACATCAAATCAACCAGAAAACTGTC
*
26942732 AAATTCATCAAA-AGATAATAATATCAAATCAACCAGAAAACTGT
1 AAATTCATCAAACA-ATAATAACATCAAATCAACCAGAAAACTGT
26942776 AACCCCGAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (45 bp):
AAATTCATCAAACAATAATAACATCAAATCAACCAGAAAACTGTC
Found at i:26956209 original size:25 final size:25
Alignment explanation
Indices: 26956181--26956272 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 25
26956171 TCTTGTACAT
* *
26956181 GTATACTCACACGAGCTGTAAATCG
1 GTATACTCACACGAGCTATAAATCA
* * * *
26956206 GTATGCTCTCATGAGCTATAAATTA
1 GTATACTCACACGAGCTATAAATCA
* *
26956231 GTATACTCTCACAAGCTATAAATCA
1 GTATACTCACACGAGCTATAAATCA
* *
26956256 GTATGCTCATACGAGCT
1 GTATACTCACACGAGCT
26956273 GTGAAAATGG
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
GTATACTCACACGAGCTATAAATCA
Found at i:26958600 original size:21 final size:21
Alignment explanation
Indices: 26958576--26958626 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
26958566 ATAGAATTGA
26958576 AAGAGTTGAAAGAACAGTTGC
1 AAGAGTTGAAAGAACAGTTGC
* * **
26958597 AAGAGTTTACATCACAGTTGC
1 AAGAGTTGAAAGAACAGTTGC
26958618 AAGAGTTGA
1 AAGAGTTGA
26958627 TAAACAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (21 bp):
AAGAGTTGAAAGAACAGTTGC
Found at i:26965412 original size:13 final size:13
Alignment explanation
Indices: 26965396--26965423 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26965386 ATATTTTGGT
26965396 AAATTATTTTCAC
1 AAATTATTTTCAC
26965409 AAATTATTTTCAC
1 AAATTATTTTCAC
26965422 AA
1 AA
26965424 CTCCATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
AAATTATTTTCAC
Found at i:26969750 original size:28 final size:28
Alignment explanation
Indices: 26969694--26969754 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
26969684 AATTTATTTA
*
26969694 AAATAAATGTATAATTTTTCTCAAGAAT
1 AAATAAATGTATAATTTTTCTCAAAAAT
*
26969722 AAATAAATGTATAATTTTAT-TTAAAAAT
1 AAATAAATGTATAATTTT-TCTCAAAAAT
26969750 AAATA
1 AAATA
26969755 TTTTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.39
Consensus pattern (28 bp):
AAATAAATGTATAATTTTTCTCAAAAAT
Found at i:26970356 original size:25 final size:24
Alignment explanation
Indices: 26970296--26970356 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
26970286 TCATCATATT
26970296 AAAATTTAAATTTAGAAAATAATG
1 AAAATTTAAATTTAGAAAATAATG
* * *
26970320 AGACTTTAAAATTT-TAAAATAATTG
1 AAAATTT-AAATTTAGAAAATAA-TG
26970345 ATAAATTTAAAT
1 A-AAATTTAAAT
26970357 AGATAACTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
24 12 0.41
25 13 0.45
26 4 0.14
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (24 bp):
AAAATTTAAATTTAGAAAATAATG
Found at i:26975707 original size:9 final size:9
Alignment explanation
Indices: 26975693--26975729 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
26975683 TATAGTTTGA
*
26975693 TATTCGAAC
1 TATTCGAAT
26975702 TATTCGAAT
1 TATTCGAAT
*
26975711 TATTCGAGT
1 TATTCGAAT
26975720 TATTCGAAT
1 TATTCGAAT
26975729 T
1 T
26975730 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26976491 original size:25 final size:25
Alignment explanation
Indices: 26976468--26976556 Score: 117
Period size: 25 Copynumber: 3.6 Consensus size: 25
26976458 TACTCTATAA
*
26976468 CTCGTGAGAGCATACCGATTTATAG
1 CTCGTGAGAGCATACCGATTTACAG
* *
26976493 CTCGTGAGAGCATACCAATCTACAG
1 CTCGTGAGAGCATACCGATTTACAG
* *
26976518 CTCGAGTGAGCATACCGATTTACAG
1 CTCGTGAGAGCATACCGATTTACAG
26976543 CTCGT-ATGAGCATA
1 CTCGTGA-GAGCATA
26976557 TATGTACATG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (25 bp):
CTCGTGAGAGCATACCGATTTACAG
Found at i:26979652 original size:35 final size:35
Alignment explanation
Indices: 26979606--26979727 Score: 122
Period size: 35 Copynumber: 3.5 Consensus size: 35
26979596 CATTCGTTGG
*
26979606 TTTATCCAACTAGCGCTAGGCGCAACTTCCATCAA
1 TTTATCCAACTAGCGCTAGGCACAACTTCCATCAA
* * * *
26979641 TTTATCCAACTAGCACCAGGCACAACTTCCGTCAG
1 TTTATCCAACTAGCGCTAGGCACAACTTCCATCAA
** * *
26979676 TTTATCTGACTAGTGCTAGGCAC-ACATT-CATCGA
1 TTTATCCAACTAGCGCTAGGCACAAC-TTCCATCAA
* *
26979710 TTTATCCGACTAACGCTA
1 TTTATCCAACTAGCGCTA
26979728 CGCGCAAACA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
34 20 0.29
35 50 0.71
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (35 bp):
TTTATCCAACTAGCGCTAGGCACAACTTCCATCAA
Found at i:26979757 original size:69 final size:69
Alignment explanation
Indices: 26979599--26979772 Score: 156
Period size: 69 Copynumber: 2.5 Consensus size: 69
26979589 AATTACACAT
* * *
26979599 TCGTTGGTTTATCCAACTAGCGCTAGGCGCA-ACTTCCATCAATTTATCCAACTAGCACCAGGCA
1 TCGTTGGTTTATCCAACTAGAGCTAGGCACACA-TTCCATCAATTTATCCAACTAACACCAGGCA
*
26979663 CAACT
65 CAACA
** ** * * * * *
26979668 TCCGTCAGTTTATCTGACTAGTGCTAGGCACACATT-CATCGATTTATCCGACTAACGCTACGCG
1 T-CGTTGGTTTATCCAACTAGAGCTAGGCACACATTCCATCAATTTATCCAACTAACACCA-G-G
26979732 CA-AACA
63 CACAACA
* *
26979738 TCGTTGGTTTATCCAACTAGAGCTTGGCTCACATT
1 TCGTTGGTTTATCCAACTAGAGCTAGGCACACATT
26979773 TAATATTGTC
Statistics
Matches: 82, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
69 47 0.57
70 31 0.38
71 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (69 bp):
TCGTTGGTTTATCCAACTAGAGCTAGGCACACATTCCATCAATTTATCCAACTAACACCAGGCAC
AACA
Found at i:26986625 original size:19 final size:19
Alignment explanation
Indices: 26986588--26986626 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
26986578 CGTTTACGTA
*
26986588 AATTATTTAAATATTAATT
1 AATTATTTAAATATAAATT
26986607 AATTATTCTAAAT-TAAATT
1 AATTATT-TAAATATAAATT
26986626 A
1 A
26986627 TCTTTATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTATTTAAATATAAATT
Found at i:26986820 original size:5 final size:5
Alignment explanation
Indices: 26986810--26986843 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
26986800 TTATCAATCA
*
26986810 ATAAT ATAAT ATAAT ACAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
26986844 AAATAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:26994816 original size:34 final size:34
Alignment explanation
Indices: 26994772--26994895 Score: 117
Period size: 34 Copynumber: 3.6 Consensus size: 34
26994762 CGTCCAATGT
* *
26994772 TAGTCGGATAAACCGAAGAATGTGTGCCCAGCAC
1 TAGTCAGATAAACTGAAGAATGTGTGCCCAGCAC
* *
26994806 TAGTCAGATAAACTGATGGAA-GT-TGCGCCTAGCGC
1 TAGTCAGATAAACTGA-AGAATGTGTGC-CC-AGCAC
* * * *
26994841 TAGTCGGATAAATTGACGAATGTGTGCCTAGCAC
1 TAGTCAGATAAACTGAAGAATGTGTGCCCAGCAC
*
26994875 TAGTCAGATAAATTGACAGAA
1 TAGTCAGATAAACTGA-AGAA
26994896 GTTACGCCTA
Statistics
Matches: 73, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
33 3 0.04
34 40 0.55
35 27 0.37
36 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (34 bp):
TAGTCAGATAAACTGAAGAATGTGTGCCCAGCAC
Found at i:26994851 original size:35 final size:34
Alignment explanation
Indices: 26994772--26994957 Score: 162
Period size: 35 Copynumber: 5.4 Consensus size: 34
26994762 CGTCCAATGT
* *
26994772 TAGTCGGATAAACCGAAGAATGTGTGC-CC-AGCAC
1 TAGTCGGATAAACTGAAGAA-GT-TGCGCCTAGCGC
* *
26994806 TAGTCAGATAAACTGATGGAAGTTGCGCCTAGCGC
1 TAGTCGGATAAACTGA-AGAAGTTGCGCCTAGCGC
* * * *
26994841 TAGTCGGATAAATTGACGAA-TGTGTGCCTAGCAC
1 TAGTCGGATAAACTGAAGAAGT-TGCGCCTAGCGC
* * * *
26994875 TAGTCAGATAAATTGACAGAAGTTACGCCTAGCGG
1 TAGTCGGATAAACTGA-AGAAGTTGCGCCTAGCGC
* *
26994910 TAGTTGGATAAACTGAAGGAAGTTGCGCCCAGCGC
1 TAGTCGGATAAACTGAA-GAAGTTGCGCCTAGCGC
*
26994945 TAGTTGGATAAAC
1 TAGTCGGATAAAC
26994958 CGACGATATT
Statistics
Matches: 124, Mismatches: 21, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
33 4 0.03
34 47 0.38
35 72 0.58
36 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (34 bp):
TAGTCGGATAAACTGAAGAAGTTGCGCCTAGCGC
Found at i:26994874 original size:69 final size:69
Alignment explanation
Indices: 26994772--26994927 Score: 213
Period size: 69 Copynumber: 2.3 Consensus size: 69
26994762 CGTCCAATGT
** *
26994772 TAGTCGGATAAACCGAAGAATGTGTGCCCAGCACTAGTCAGATAAACTGATGGAAGTTGCGCCTA
1 TAGTCGGATAAACCGAAGAATGTGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTACGCCTA
26994837 GCGC
66 GCGC
** * * *
26994841 TAGTCGGATAAATTGACGAATGTGTGCCTAGCACTAGTCAGATAAATTGACAGAAGTTACGCCTA
1 TAGTCGGATAAACCGAAGAATGTGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTACGCCTA
*
26994906 GCGG
66 GCGC
* *
26994910 TAGTTGGATAAACTGAAG
1 TAGTCGGATAAACCGAAG
26994928 GAAGTTGCGC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 75 1.00
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (69 bp):
TAGTCGGATAAACCGAAGAATGTGTGCCCAGCACTAGTCAGATAAACTGACAGAAGTTACGCCTA
GCGC
Found at i:26998840 original size:6 final size:7
Alignment explanation
Indices: 26998824--26998851 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26998814 GACTCAACGC
26998824 AAAAAGA
1 AAAAAGA
26998831 AAAAAGA
1 AAAAAGA
26998838 AAAAAGA
1 AAAAAGA
26998845 AAAAAGA
1 AAAAAGA
26998852 GTTCATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:27001783 original size:45 final size:45
Alignment explanation
Indices: 27001710--27002108 Score: 178
Period size: 45 Copynumber: 8.8 Consensus size: 45
27001700 AGATGAAGGG
* * * * *
27001710 TGCCAT-GATGTCTTTCAACCATGTTCTTATTTATTCTCGACTTGA
1 TGCCATAG-TGTCTTTCAACTATGGTCTTATTCATTTTCGACATGA
* * *
27001755 TGCCATAGTGTCTTTCAACGATGGTCTTATTCATTTTCCATCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGA-CATGA
* * * *
27001801 TGTCATAGTGTCTTTCAACTATGATCTTATTCATTTTTCGTCGT-A
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCA-TTTTCGACATGA
* **
27001846 TTGCCATAGTGT-TTTTAACTATGGTCTTATTCA-TTT-GATTTGTGA
1 -TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGA--CATGA
* * ** ** * *
27001891 TGTCATAGCGTCTTTCTGCTATAATCTTACTCCA---TAGAATCATGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTA-TTCATTTTCG-A-CATGA
** * * * *
27001936 TGCCATAACGTCTCTCAGCTATGGT-TT-TAC-TTATTAGA-ATTGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATT-TTCGACA---TGA
* * * * ** * *
27001981 TGCCATAATGTCCTTT-AACTATGGTCTTACTCGTTTTTGGTAAGG
1 TGCCATAGTGT-CTTTCAACTATGGTCTTATTCATTTTCGACATGA
* * * * *
27002026 TGCCATAGTGTCTTTCAACCATGGTCTTATTTATTTCCAATAT-A
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGACATGA
*
27002070 GTGCCATAGTGTCTTTCAACTATGGTCTTAATCATTTTC
1 -TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTC
27002109 TTCAAGCCAA
Statistics
Matches: 269, Mismatches: 60, Indels: 50
0.71 0.16 0.13
Matches are distributed among these distances:
42 4 0.01
43 3 0.01
44 19 0.07
45 176 0.65
46 55 0.20
47 9 0.03
48 3 0.01
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGACATGA
Found at i:27001818 original size:46 final size:46
Alignment explanation
Indices: 27001710--27001881 Score: 179
Period size: 45 Copynumber: 3.8 Consensus size: 46
27001700 AGATGAAGGG
* * * * * * *
27001710 TGCCAT-GATGTCTTTCAACCATGTTCTTATTTATTCTCGA-CTTGA
1 TGCCATAG-TGTCTTTCAACTATGGTCTTATTCATTTTCCATCATGT
*
27001755 TGCCATAGTGTCTTTCAACGATGGTCTTATTCATTTTCCATCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCATCATGT
* * * * * *
27001801 TGTCATAGTGTCTTTCAACTATGATCTTATTCATTTTTCGTCGTAT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCATCATGT
*
27001847 TGCCATAGTGT-TTTTAACTATGGTCTTATTCATTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTT
27001882 GATTTGTGAT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
45 55 0.51
46 53 0.49
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCATCATGT
Found at i:27008775 original size:22 final size:22
Alignment explanation
Indices: 27008749--27008803 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
27008739 ATAATAGGTA
* *
27008749 CAGATGCAGAGCATATCAGATT
1 CAGATCCAGAGCATATCAAATT
*
27008771 TAGATCCAGAGCATATCAAATT
1 CAGATCCAGAGCATATCAAATT
*
27008793 CAGATTCAGAG
1 CAGATCCAGAG
27008804 TCCAAACCCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (22 bp):
CAGATCCAGAGCATATCAAATT
Found at i:27013668 original size:44 final size:43
Alignment explanation
Indices: 27013594--27013791 Score: 154
Period size: 44 Copynumber: 4.6 Consensus size: 43
27013584 GGCATTACAT
* * *
27013594 GATTTCGTATAAGACCATAGCTAGG-CTATGACATCGATATATGA
1 GATTT-GTGTAAGACCATATCTGGGAC-ATGACATCGATATATGA
* *
27013638 GACTTTGTGTAAGACCATATCTGGGATATGACATCGATATATGT
1 GA-TTTGTGTAAGACCATATCTGGGACATGACATCGATATATGA
* * ** * *
27013682 GATTACGTGTAAGACCATGTCTGGGACATTGGTATCG-T-TACGT
1 GATT-TGTGTAAGACCATATCTGGGACA-TGACATCGATATATGA
* *
27013725 GATTTCGTGTAAGACCATGTCTGGGACATTAGCATCGATATAT--
1 GATTT-GTGTAAGACCATATCTGGGACATGA-CATCGATATATGA
* * *
27013768 GATTCGTGCAAGACCATAGCTGGG
1 GATTTGTGTAAGACCATATCTGGG
27013792 CTATTGAGAT
Statistics
Matches: 126, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
42 17 0.13
43 40 0.32
44 58 0.46
45 11 0.09
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTTGTGTAAGACCATATCTGGGACATGACATCGATATATGA
Found at i:27013741 original size:43 final size:45
Alignment explanation
Indices: 27013622--27013835 Score: 173
Period size: 43 Copynumber: 4.9 Consensus size: 45
27013612 AGCTAGGCTA
* * * * *
27013622 TGACATCGATATATGAGACTT-TGTGTAAGACCATATCTGGGATA-
1 TGACATCGATATACGTGA-TTACGTGTAAGACCATGTCTGGGACAT
*
27013666 TGACATCGATATATGTGATTACGTGTAAGACCATGTCTGGGACAT
1 TGACATCGATATACGTGATTACGTGTAAGACCATGTCTGGGACAT
** *
27013711 TGGTATCG-T-TACGTGATTTCGTGTAAGACCATGTCTGGGACAT
1 TGACATCGATATACGTGATTACGTGTAAGACCATGTCTGGGACAT
*
27013754 T-AGCATCGATATA--TGATT-CGTGCAAGACCATAG-CTGGG-CTAT
1 TGA-CATCGATATACGTGATTACGTGTAAGACCAT-GTCTGGGAC-AT
* * * * *
27013796 TGAGATTGATAT--GTGATAACATGTAAGACCATATCTGGGA
1 TGACATCGATATACGTGATTACGTGTAAGACCATGTCTGGGA
27013836 TATGGCATTG
Statistics
Matches: 141, Mismatches: 17, Indels: 24
0.77 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.22
43 62 0.44
44 39 0.28
45 8 0.06
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (45 bp):
TGACATCGATATACGTGATTACGTGTAAGACCATGTCTGGGACAT
Found at i:27013821 original size:85 final size:86
Alignment explanation
Indices: 27013645--27013835 Score: 212
Period size: 85 Copynumber: 2.2 Consensus size: 86
27013635 TGAGACTTTG
* *
27013645 TGTAAGACCATATCTGGGATATGACATCGATATATGTGATTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCATATCTGGGACATGACATCGATATA-GTGATTACGTGCAAGACCATGTCTGGGACA
* ** *
27013710 TTGGTATCGTTACGTGATTTCG
65 TTGGTATCGATACGTGATAACA
* *
27013732 TGTAAGACCATGTCTGGGACATTAGCATCGATATA-TGATT-CGTGCAAGACCATAG-CTGGG-C
1 TGTAAGACCATATCTGGGACATGA-CATCGATATAGTGATTACGTGCAAGACCAT-GTCTGGGAC
* *
27013793 TATTGAG-ATTGATATGTGATAACA
64 -ATTG-GTATCGATACGTGATAACA
27013817 TGTAAGACCATATCTGGGA
1 TGTAAGACCATATCTGGGA
27013836 TATGGCATTG
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
84 1 0.01
85 50 0.56
86 7 0.08
87 21 0.24
88 10 0.11
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (86 bp):
TGTAAGACCATATCTGGGACATGACATCGATATAGTGATTACGTGCAAGACCATGTCTGGGACAT
TGGTATCGATACGTGATAACA
Found at i:27017245 original size:27 final size:27
Alignment explanation
Indices: 27017227--27017656 Score: 366
Period size: 27 Copynumber: 16.2 Consensus size: 27
27017217 GGTATAACAA
*
27017227 TCATTTTACCCTATGGGGGTGTTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
27017253 ATCATTTTACCCTATTGGGGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCAG
* * * * *
27017281 TTATTCTACCATATGGGAGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
27017308 TTATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
27017335 TTATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
27017362 TCATTTTA--CT-T-----TATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
** * * *
27017381 TCATTAGAACTTATGGAGGTATTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
* ** *
27017407 ATTATTTTACCCTATGGGAATATTTCAA
1 -TCATTTTACCCTATGGGGGTATTTCAG
* *
27017435 TCATTTTACCCTATGAGAGTATTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
* * **
27017461 ATTATTTTACCTTATGGGGGTATTTTGG
1 -TCATTTTACCCTATGGGGGTATTTCAG
*
27017489 TCATTTTACCCTATGAGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
* * * **
27017516 TCATTTTACTCTGTGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
27017543 TTATTTTACCCTATGGGGGTATTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
27017569 ATCATTTTATCCTCTGGGGGTATTTC-G
1 -TCATTTTACCCTATGGGGGTATTTCAG
* *
27017596 ATCATTTTACCCTATGAGGGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCAG
*
27017624 TCATTTTACCATATGGGGGTATTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
27017650 ATCATTT
1 -TCATTT
27017657 ATTGACCTCT
Statistics
Matches: 331, Mismatches: 56, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
19 13 0.04
21 1 0.00
22 1 0.00
24 1 0.00
25 2 0.01
26 3 0.01
27 307 0.93
28 3 0.01
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAG
Found at i:27017296 original size:54 final size:54
Alignment explanation
Indices: 27017227--27017656 Score: 430
Period size: 54 Copynumber: 8.1 Consensus size: 54
27017217 GGTATAACAA
* *
27017227 TCATTTTACCCTATGGGGGTGTTTCGATCATTTTACCCTATTGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* * * * * * *
27017281 TTATTCTACCATATGGGAGTATTTCGGTTATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
*
27017335 TTATTTTACCCTATGGGGGTATTTC-AGTCATTTTA--CT-T-----TATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCGG
** * * * * ** **
27017381 TCATTAGAACTTATGGAGGTATTTCGATTATTTTACCCTATGGGAATATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* * * * *
27017435 TCATTTTACCCTATGAGAGTATTTCGATTATTTTACCTTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* * * * *
27017489 TCATTTTACCCTATGAGGGTATTTC-AGTCATTTTACTCTGTGAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCGG
* * * *
27017543 TTATTTTACCCTATGGGGGTATTTCGATCATTTTATCCTCTGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* * * *
27017597 TCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCATATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
27017651 TCATTT
1 TCATTT
27017657 ATTGACCTCT
Statistics
Matches: 307, Mismatches: 57, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
46 33 0.11
47 1 0.00
48 2 0.01
49 1 0.00
51 1 0.00
52 2 0.01
53 1 0.00
54 265 0.86
55 1 0.00
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (54 bp):
TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
Found at i:27021576 original size:42 final size:42
Alignment explanation
Indices: 27021510--27021632 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 42
27021500 ATAGTGAGTT
* *
27021510 ACACAGCTT-GGACACACGCCCATGTCCTTGCTCGTGTGGCTC
1 ACACAGCTTGGGA-ACACGCTCATGTCCTTGCTCGTGTGGCCC
* * * *
27021552 ACGCAGCTTGGGAACACGCTCATGTCTTTGCCCATGTGGCCC
1 ACACAGCTTGGGAACACGCTCATGTCCTTGCTCGTGTGGCCC
** * *
27021594 ACATGGCTTGGGCACACG-TCCATGTCCTTGGTCGTGTGG
1 ACACAGCTTGGGAACACGCT-CATGTCCTTGCTCGTGTGG
27021633 TCCTAAATCA
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.02
42 61 0.94
43 3 0.05
ACGTcount: A:0.15, C:0.32, G:0.28, T:0.25
Consensus pattern (42 bp):
ACACAGCTTGGGAACACGCTCATGTCCTTGCTCGTGTGGCCC
Found at i:27021737 original size:146 final size:146
Alignment explanation
Indices: 27021456--27021726 Score: 411
Period size: 146 Copynumber: 1.9 Consensus size: 146
27021446 TCACACGACC
* *
27021456 TGGGCACACACCTATGTCCTTAGTCGTGTGGTCTTAAATCATAAATAGTGAGTTACACAGCTTGG
1 TGGGCACACACCTATGTCCTTAGTCGTGTGGTCCTAAATCATAAATAGTGAGTTACACAGCCTGG
* * *
27021521 ACACACGCCCATGTCCTTGCTCGTGTGGCTCACGCAGCTTGGGAACACGCTCATGTCTTTGCCCA
66 ACACACGCCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGGAACACGCTCATGTCTTTGCCCA
27021586 TGTGGCCCACATGGCT
131 TGTGGCCCACATGGCT
* * *
27021602 TGGGCACACGTCC-ATGTCCTTGGTCGTGTGGTCCTAAATCATAAATAGTGAGTTATACAGCCTG
1 TGGGCACAC-ACCTATGTCCTTAGTCGTGTGGTCCTAAATCATAAATAGTGAGTTACACAGCCTG
* * *
27021666 GACACAGGCCCATGTCCTTGCCCGTGTGGCTCACACGGCCTGGGCACACG-TCCATGTCTTT
65 GACACACGCCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGGAACACGCT-CATGTCTTT
27021727 TGTCGTGTGG
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
145 1 0.01
146 109 0.97
147 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (146 bp):
TGGGCACACACCTATGTCCTTAGTCGTGTGGTCCTAAATCATAAATAGTGAGTTACACAGCCTGG
ACACACGCCCATGTCCTTGCCCGTGTGGCTCACACAGCCTGGGAACACGCTCATGTCTTTGCCCA
TGTGGCCCACATGGCT
Found at i:27024395 original size:54 final size:53
Alignment explanation
Indices: 27024308--27024412 Score: 138
Period size: 54 Copynumber: 2.0 Consensus size: 53
27024298 CCTCACATTT
* * *
27024308 CCTGGCACATGGTCGAGTGACCCAAGTCAGAGAGTTATACGGTCTGGTACACGG
1 CCTGACACATGCTCGAGTGACCCAAGTCAGAGAGTTACACGGTCTGG-ACACGG
* ** *
27024362 CCTGACACATGCTCGTGTGACTGAAGTCAGAGAGTTACATGGTCTGGACAC
1 CCTGACACATGCTCGAGTGACCCAAGTCAGAGAGTTACACGGTCTGGACAC
27024413 ATGCCCCTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.22
Consensus pattern (53 bp):
CCTGACACATGCTCGAGTGACCCAAGTCAGAGAGTTACACGGTCTGGACACGG
Found at i:27030893 original size:5 final size:5
Alignment explanation
Indices: 27030885--27030913 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
27030875 ACGTTACATT
27030885 AAATC AAATC AAATC AAATC AAATC AAAT
1 AAATC AAATC AAATC AAATC AAATC AAAT
27030914 ATTTACAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21
Consensus pattern (5 bp):
AAATC
Found at i:27044691 original size:64 final size:63
Alignment explanation
Indices: 27044488--27044695 Score: 188
Period size: 64 Copynumber: 3.3 Consensus size: 63
27044478 ATTTATCACA
* * * * * ** **
27044488 TCAATGAGTTACATGGCCTGGGCACACGCCTGTGTCCCTTGCCTGTGTGACTCTAAATTTGAAC
1 TCAATGAGTTACACGG-TTGGACACACGCCCGTGTCTCTTTTCTGTGTGACTCTAAATTCCAAC
* * * * * *
27044552 TCAA-GAGTTACACGACTTGGACACATGCCCGTGTGTCTTTTCCGTGTGACTCCAAATTCTAAC
1 TCAATGAGTTACACG-GTTGGACACACGCCCGTGTCTCTTTTCTGTGTGACTCTAAATTCCAAC
* * *
27044615 T--TTGAGAATTACACGGTGTGGACACACACCCGTGTCTCTTTTCTGTGTGACTTTAAATTCCAA
1 TCAATGAG--TTACACGGT-TGGACACACGCCCGTGTCTCTTTTCTGTGTGACTCTAAATTCCAA
27044678 C
63 C
27044679 TCAATGAGTTACACGGT
1 TCAATGAGTTACACGGT
27044696 CTCTCATACG
Statistics
Matches: 113, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
62 3 0.03
63 46 0.41
64 60 0.53
66 4 0.04
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (63 bp):
TCAATGAGTTACACGGTTGGACACACGCCCGTGTCTCTTTTCTGTGTGACTCTAAATTCCAAC
Found at i:27052931 original size:22 final size:22
Alignment explanation
Indices: 27052889--27052931 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27052879 TTAATTCATT
* *
27052889 GAAATGGAATAAAGTTATAATC
1 GAAATAGAATAAAATTATAATC
*
27052911 GAAATAGAATAAAATTGTAAT
1 GAAATAGAATAAAATTATAAT
27052932 GGAATTAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.28
Consensus pattern (22 bp):
GAAATAGAATAAAATTATAATC
Found at i:27054848 original size:19 final size:21
Alignment explanation
Indices: 27054824--27054863 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
27054814 TTCAAGTTTT
27054824 ATTAATA-A-TTTTTATAATA
1 ATTAATATATTTTTTATAATA
27054843 ATTAATATTATTTTTTATAAT
1 ATTAATA-TATTTTTTATAAT
27054864 TTAAAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 1 0.06
22 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTAATATATTTTTTATAATA
Found at i:27055152 original size:18 final size:17
Alignment explanation
Indices: 27055129--27055163 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
27055119 TAATTGATTT
27055129 TTAATTAAATAAATTTAA
1 TTAATTAAA-AAATTTAA
27055147 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
27055164 ACCCTAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:27056352 original size:126 final size:126
Alignment explanation
Indices: 27056127--27056378 Score: 488
Period size: 126 Copynumber: 2.0 Consensus size: 126
27056117 TATTTTACAT
27056127 TTTTACCCCAAACTCCCAAACCTTTTTACTTTTCCCTCAAAACTTTTACTCCTTCCCACTTTCCC
1 TTTTACCCCAAACTCCCAAACCTTTTTACTTTTCCCTCAAAACTTTTACTCCTTCCCACTTTCCC
27056192 CCCAAAACTTTTACTCCCCTCCCCTCCCAACCCCCCAATCTACCCAAAATCCATTTCCCAC
66 CCCAAAACTTTTACTCCCCTCCCCTCCCAACCCCCCAATCTACCCAAAATCCATTTCCCAC
27056253 TTTTACCCCAAACTCCCAAACCTTTTTACTTTTCCCTCAAAACTTTTACTCCTTCCCAC-TTCTC
1 TTTTACCCCAAACTCCCAAACCTTTTTACTTTTCCCTCAAAACTTTTACTCCTTCCCACTTTC-C
27056317 CCCCAAAACTTTTACTCCCCTCCCCTCCCAACCCCCCAATCTACCCAAAATCCATTTCCCAC
65 CCCCAAAACTTTTACTCCCCTCCCCTCCCAACCCCCCAATCTACCCAAAATCCATTTCCCAC
27056379 CAAAATTTTA
Statistics
Matches: 125, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
125 3 0.02
126 122 0.98
ACGTcount: A:0.24, C:0.46, G:0.00, T:0.30
Consensus pattern (126 bp):
TTTTACCCCAAACTCCCAAACCTTTTTACTTTTCCCTCAAAACTTTTACTCCTTCCCACTTTCCC
CCCAAAACTTTTACTCCCCTCCCCTCCCAACCCCCCAATCTACCCAAAATCCATTTCCCAC
Done.