Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42799318
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.32
Warning! 891409 characters in sequence are not A, C, G, or T
File 95 of 141
Found at i:27056479 original size:30 final size:30
Alignment explanation
Indices: 27056445--27056502 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
27056435 AAACCTTTTA
* *
27056445 TTTTCCCCCAAAATTTTTACTCTCTTCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCAC
* *
27056475 TTTTCCCCTAAAACTTTTATTCCCTTCC
1 TTTTCCCCCAAAACTTTTACTCCCTTCC
27056503 CATCTCACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCAC
Found at i:27057267 original size:5 final size:5
Alignment explanation
Indices: 27057257--27057292 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
27057247 CTCGAAAATT
27057257 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
27057293 CGAATGCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:27057375 original size:18 final size:17
Alignment explanation
Indices: 27057344--27057378 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
27057334 GATTTAGGGT
27057344 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
27057361 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
27057379 AATCTATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:27063447 original size:17 final size:17
Alignment explanation
Indices: 27063427--27063464 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
27063417 CTTTCCCCTC
27063427 TAAACCCTTGATATCTT
1 TAAACCCTTGATATCTT
27063444 TAAACCCTTGATATCTT
1 TAAACCCTTGATATCTT
27063461 TAAA
1 TAAA
27063465 GAATTCCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (17 bp):
TAAACCCTTGATATCTT
Found at i:27066924 original size:19 final size:20
Alignment explanation
Indices: 27066900--27066941 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
27066890 AAAATAATAT
*
27066900 AATGAATACAAT-AATAAAA
1 AATGAATAAAATAAATAAAA
27066919 AATGAATAAAATCAAATAAAA
1 AATGAATAAAAT-AAATAAAA
27066940 AA
1 AA
27066942 ATTCAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (20 bp):
AATGAATAAAATAAATAAAA
Found at i:27066935 original size:14 final size:14
Alignment explanation
Indices: 27066918--27066967 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
27066908 CAATAATAAA
27066918 AAATGAATAAAA-TC
1 AAAT-AATAAAATTC
*
27066932 AAATAAAAAAATTC
1 AAATAATAAAATTC
*
27066946 AAATAATAATATT-
1 AAATAATAAAATTC
*
27066959 ATATAATAA
1 AAATAATAA
27066968 TGATACGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 14 0.45
14 17 0.55
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (14 bp):
AAATAATAAAATTC
Found at i:27067523 original size:111 final size:109
Alignment explanation
Indices: 27067304--27067724 Score: 659
Period size: 110 Copynumber: 3.9 Consensus size: 109
27067294 ATATTTGGCT
* * * ** *
27067304 ATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGTA-CATTCCTCAAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACG
* *
27067366 CAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTTAGCC
66 CAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
*
27067410 ATTTGGTTGAACGAGAAAAATTGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTT-CCAAAC
27067475 GCAAAACATTGCCTTATTTTATAAATTTTTAAAAGGATATTAAGCC
65 GCAAAACATTGCCTTATTTTA-AAATTTTTAAAAGGATATTAAGCC
*
27067521 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTT-CCAAAC
*
27067586 GTAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
65 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
* *
27067631 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTTCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACG
*
27067696 CAAAACATTGCCTTATTTGAAAAATTTTT
66 CAAAACATTGCCTTATTT-TAAAATTTTT
27067725 CGTTTTTGAT
Statistics
Matches: 294, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
106 14 0.05
108 23 0.08
109 34 0.12
110 117 0.40
111 106 0.36
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (109 bp):
ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACG
CAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
Found at i:27067670 original size:221 final size:216
Alignment explanation
Indices: 27067304--27067724 Score: 662
Period size: 221 Copynumber: 1.9 Consensus size: 216
27067294 ATATTTGGCT
*
27067304 ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGTACATTCCTCAAATTTCCAAACGCAA
1 ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACATTCCTCAAATTTCCAAACGCAA
* * *
27067369 AACATTGCCTTATTTTGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAAAAATTGA
66 AACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGA
* *
27067434 CACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCCAAACGCAAAACATTGCCTTATTTTATAA
131 CACCCAGCACCTTAGGGCATGTTTTCTCAAATTT-CCAAACGCAAAACATTGCCTTATTTGAAAA
27067499 ATTTTTAAAAGGATATTAAGCC
195 ATTTTTAAAAGGATATTAAGCC
* * ** * *
27067521 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCA-CATTCCTCAAATTT-CCAAAC
*
27067586 GTAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAA
62 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAA
* *
27067651 TCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTTCAAACGCAAAACATTGCCTTATTTGA
127 TCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATTTGA
27067716 AAAATTTTT
192 AAAATTTTT
27067725 CGTTTTTGAT
Statistics
Matches: 185, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
217 14 0.08
219 24 0.13
220 43 0.23
221 104 0.56
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (216 bp):
ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACATTCCTCAAATTTCCAAACGCAA
AACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGA
CACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATTTGAAAAA
TTTTTAAAAGGATATTAAGCC
Found at i:27067859 original size:18 final size:17
Alignment explanation
Indices: 27067833--27067871 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
27067823 ATATATAATG
*
27067833 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
27067850 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
27067868 AAAA
1 AAAA
27067872 AATTAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:27067893 original size:26 final size:26
Alignment explanation
Indices: 27067859--27067932 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 26
27067849 TAAAAGTAAA
*
27067859 TAAACAAATAAAAAATTAA-AGCACT-
1 TAAATAAATAAAAAATTAAGAGCA-TG
*
27067884 TAAATAAAATAAAAATAATAATGAGCATG
1 TAAAT-AAATAAAAA-ATTAA-GAGCATG
27067913 TAAATAAATAAATAAATTAA
1 TAAATAAATAAA-AAATTAA
27067933 CACCAAATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
25 4 0.10
26 9 0.22
27 4 0.10
28 12 0.30
29 11 0.28
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (26 bp):
TAAATAAATAAAAAATTAAGAGCATG
Found at i:27068245 original size:3 final size:3
Alignment explanation
Indices: 27068239--27068271 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
27068229 CAACAACAAC
27068239 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
27068272 GCTAAAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:27070079 original size:126 final size:129
Alignment explanation
Indices: 27069921--27070249 Score: 470
Period size: 126 Copynumber: 2.6 Consensus size: 129
27069911 CCACTACTGT
* *
27069921 TTAGGGAGATAGGATCTGTAATCTTCAATCTATTCCACTGCCAACCAGAGAGATAGAATTACTAG
1 TTAGGGAGATAAGATCTG-AATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTAG
* * * *
27069986 CTTCAATGTACTCCATTGTAATCACAGGGAGGTAAAATCTGTCATCTTCAATATGCT-C-C-A-C
65 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATATGCTCCACTACC
27070047 TTAGGGAGATAAGATCTGACATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTA-
1 TTAGGGAGATAAGATCTGA-ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTAG
** * *
27070111 CTTCAATGTACTTTACTGTAACCACATGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACTACT
65 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATATGCTCCACTAC-
27070176 GC
129 -C
* *
27070178 TTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATTGG
1 TTAGGGAGATAAGATCTG-AATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTAG
27070243 CTTCAAT
65 CTTCAAT
27070250 CTGTTTAACT
Statistics
Matches: 182, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
125 50 0.27
126 61 0.34
127 1 0.01
128 1 0.01
131 61 0.34
132 8 0.04
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (129 bp):
TTAGGGAGATAAGATCTGAATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTACTAGC
TTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATATGCTCCACTACC
Found at i:27070084 original size:38 final size:38
Alignment explanation
Indices: 27070011--27070085 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
27070001 TTGTAATCAC
* * *
27070011 AGGGAGGTAAAATCTGTCATCTTCAATATGCTCCACTT
1 AGGGAGATAAAATCTGACATCTTCAATATACTCCACTT
* * *
27070049 AGGGAGATAAGATCTGACATCTTCAATCTATTCCACT
1 AGGGAGATAAAATCTGACATCTTCAATATACTCCACT
27070086 GCCAACCAGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (38 bp):
AGGGAGATAAAATCTGACATCTTCAATATACTCCACTT
Found at i:27070225 original size:131 final size:132
Alignment explanation
Indices: 27069910--27070249 Score: 496
Period size: 131 Copynumber: 2.6 Consensus size: 132
27069900 TTTGACCTAT
* * * *
27069910 TCCACTACTGTTTAGGGAGATAGGATCTGTAATCTTCAATCTATTCCACTGCCAACCAGAGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
* * * *
27069975 AGAATTACTAGCTTCAATGTACTCCATTGTAATCACAGGGAGGTAAAATCTGTCATCTTCAATAT
66 AGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATAT
27070040 GC
131 GC
*
27070042 T-C-C-A---CTTAGGGAGATAAGATCTGACATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
** * *
27070101 AGAATTACTA-CTTCAATGTACTTTACTGTAACCACATGGAGGTAAAATCCGCCATCTTCAATCT
66 AGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATAT
27070165 GC
131 GC
27070167 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
* *
27070232 AGAATTATTGGCTTCAAT
66 AGAATTACTAGCTTCAAT
27070250 CTGTTTAACT
Statistics
Matches: 185, Mismatches: 16, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
125 49 0.26
126 61 0.33
127 1 0.01
128 1 0.01
129 1 0.01
130 1 0.01
131 63 0.34
132 8 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACCAGGGAGAT
AGAATTACTAGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCAATAT
GC
Found at i:27070228 original size:44 final size:45
Alignment explanation
Indices: 27070049--27070232 Score: 107
Period size: 44 Copynumber: 4.2 Consensus size: 45
27070039 TGCTCCACTT
*
27070049 AGGGAGATAAGATCTGACATCTTCAATCTATTCCACTGCCAAC-C
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACAC
* * * *
27070093 AGGGAGAT-AGAAT-T--ACTACTTCAATGTACTT-TACTG-TAACCAC
1 AGGGAGATAAG-ATCTGAAAT-CTTCAATCTA-TTCCACTGCCAA-CAC
* * * * ** ** * ** **
27070136 ATGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACT-ACTGCTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACAC
27070180 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAAC-C
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACAC
27070224 AGGGAGATA
1 AGGGAGATA
27070233 GAATTATTGG
Statistics
Matches: 96, Mismatches: 32, Indels: 24
0.63 0.21 0.16
Matches are distributed among these distances:
41 3 0.03
42 14 0.15
43 14 0.15
44 51 0.53
45 13 0.14
46 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (45 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCCAACAC
Found at i:27070347 original size:66 final size:66
Alignment explanation
Indices: 27070240--27070367 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
27070230 ATAGAATTAT
* * * * *
27070240 TGGCTTCAATCTGTTTAACTGTAATGTTGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTGTT
1 TGGCTTCAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGTT
27070305 G
66 G
* *
27070306 TGGCTTCAATCT-TTTGAATTGCAATGTCGAGGAAGCGAGATTCACCGTCGTAGCTTCAATCT
1 TGGCTTCAATCTGTTT-AACTGCAATGTCGAGGAAGCAAGATTCACCGTCGTAGCTTCAATCT
27070368 ATTTCGCTGC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 3 0.06
66 51 0.94
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (66 bp):
TGGCTTCAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGTT
G
Found at i:27070534 original size:99 final size:100
Alignment explanation
Indices: 27070302--27070703 Score: 573
Period size: 99 Copynumber: 4.0 Consensus size: 100
27070292 GCTTCAATCT
* * * *
27070302 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGAGGAAGCGAGATTCACCGTCGT-AGCTTCAAT
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGA-CTTCAAT
* * *
27070366 CTAT-TTC-GCTGCATTGTCTGGGAAGTAAGATTCGTC
65 CT-TGTTCTGCTGCATCG-CTTGGAAGTAAGATTCGCC
*
27070402 GTGGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGACTTCAATC
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGACTTCAATC
*
27070467 TTTTTC-GCTGCATCGCTTGGAAGTAAGATTCGCC
66 TTGTTCTGCTGCATCGCTTGGAAGTAAGATTCGCC
* * *
27070501 GTTGTGGCTTCAATATTTTGAATTGCAATGTCGGGGACTCAAGATTCGCCGTTGTGACTTCAATC
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGACTTCAATC
*
27070566 -TGTTCTGCTGCATCGCTTGGAAGTAAGATTCACC
66 TTGTTCTGCTGCATCGCTTGGAAGTAAGATTCGCC
* * * *
27070600 GTTGTGGCTTCAATCTTCTGAATTACAATGTCGGGGACGCAAGATTCGCTGTTGTGACTTCAAT-
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGACTTCAATC
*
27070664 TTGTTCTGCTGCATCACTTGGAAGTAAGATTCGCC
66 TTGTTCTGCTGCATCGCTTGGAAGTAAGATTCGCC
27070699 GTTGT
1 GTTGT
27070704 TGATTTGCTC
Statistics
Matches: 277, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
98 4 0.01
99 202 0.73
100 70 0.25
101 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (100 bp):
GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACCGTTGTGACTTCAATC
TTGTTCTGCTGCATCGCTTGGAAGTAAGATTCGCC
Found at i:27070654 original size:50 final size:50
Alignment explanation
Indices: 27070302--27070663 Score: 299
Period size: 50 Copynumber: 7.3 Consensus size: 50
27070292 GCTTCAATCT
* * *
27070302 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGAGGAAGCGAGATTCACC
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * * * * * *
27070352 GTCGTAGCTTCAATCTATTTCG--CTGCATTGTCTGGGAAGTAAGATTCGTC
1 GTTGTGGCTTCAATCT-TTT-GAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * *
27070402 GTGGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGACGCAAGATTCACC
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGATTCGCC
* **** ** *
27070452 GTTGTGACTTCAATCTTTTTCGCTGC-ATCG-CTTGGAAGTAAGATTCGCC
1 GTTGTGGCTTCAATCTTTTGAATTGCAAT-GTCGGGGAAGCAAGATTCGCC
* **
27070501 GTTGTGGCTTCAATATTTTGAATTGCAATGTCGGGGACTCAAGATTCGCC
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGATTCGCC
* * ** * *
27070551 GTTGTGACTTCAATCTGTTCTG--CTGC-ATCG-CTTGGAAGTAAGATTCACC
1 GTTGTGGCTTCAATCT-TT-TGAATTGCAAT-GTCGGGGAAGCAAGATTCGCC
* * * *
27070600 GTTGTGGCTTCAATCTTCTGAATTACAATGTCGGGGACGCAAGATTCGCT
1 GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGATTCGCC
*
27070650 GTTGTGACTTCAAT
1 GTTGTGGCTTCAAT
27070664 TTGTTCTGCT
Statistics
Matches: 237, Mismatches: 61, Indels: 28
0.73 0.19 0.09
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 73 0.31
50 152 0.64
51 5 0.02
52 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (50 bp):
GTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGATTCGCC
Found at i:27070925 original size:132 final size:132
Alignment explanation
Indices: 27070703--27070993 Score: 395
Period size: 132 Copynumber: 2.2 Consensus size: 132
27070693 TTCGCCGTTG
* * ** * * *
27070703 TTGATTTGCTCCACTACTGCTTAGGGATACAGAATCTACAATATTTGACCTATTCTACTATTGCT
1 TTGATCTGCTCCACTACTGCTTAGGGATACAAAATCTACAATATTCAACCTACTCCACTACTGCT
* * * *
27070768 TAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCATTGTTTTGGGAAGATAAGATTCACCAT
66 TAGGGAGATAGAACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAGATTCACCAT
27070833 CT
131 CT
* * *
27070835 TTGATCTGCTCCACTACTGCTTAGGG-TGACAAAATTTGCAATCTTCAACCTACTCCACTACTGC
1 TTGATCTGCTCCACTACTGCTTAGGGAT-ACAAAATCTACAATATTCAACCTACTCCACTACTGC
*
27070899 TTAGGGAGATAGAATTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAGATTCACCA
65 TTAGGGAGATAGAACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAGATTCACCA
27070964 TCT
130 TCT
** * *
27070967 ACGATCTGCTCCGCTACTGCTGAGGGA
1 TTGATCTGCTCCACTACTGCTTAGGGA
27070994 GGTAAGGCTT
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
131 1 0.01
132 137 0.99
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (132 bp):
TTGATCTGCTCCACTACTGCTTAGGGATACAAAATCTACAATATTCAACCTACTCCACTACTGCT
TAGGGAGATAGAACTAATGGCTTAAATCTACTTCTCCACTGTCTTGGGAAGATAAGATTCACCAT
CT
Found at i:27071099 original size:88 final size:87
Alignment explanation
Indices: 27071002--27072666 Score: 1086
Period size: 88 Copynumber: 19.1 Consensus size: 87
27070992 GAGGTAAGGC
* * * * * *
27071002 TTGTGTCTTCGATCTGCTTCTCTATCGATGCAGGAAGGCAAAATCTGCTATCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * *
27071067 ACTACAACCGAGGGAGGCAAAGC
66 GCTACAACCGAGAGAGG-AAAGT
* * * * **
27071090 TTGTATCTTCGATAC-GCTTCGCTGCCGATGTAGGAAGGCAAGATCTACTGTCTTCAACCAGCTC
1 TTGTGTCTTCGAT-CTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
** * * *
27071154 TACTACAACCGAGGGAGGCAAGGC
65 CGCTACAACCGAGAGAGG-AAAGT
* * * * *
27071178 TTGTGTTTTCGAT-TCGCTTCGCTGTCGATTCAGGAAGGCAAGATCTGTTGTCATCATCCAGCTC
1 TTGTGTCTTCGATCT-GCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
* *
27071242 CACTACAACCGAGAGAGGCAAGGT
65 CGCTACAACCGAGAGAGG-AAAGT
* *
27071266 TTGTGTCTTCGATCTACTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCT
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* *
27071331 GTTACAACCGAGAGAGGCAAGGT
66 GCTACAACCGAGAGAGG-AAAGT
* * * * *
27071354 TTGTGTCTTTGATCTACTTCGTTGTCAATGAAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
27071419 GCTACAACCGAGAGAGGAAAGGT
66 GCTACAACCGAGAGAGGAAA-GT
27071442 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
*
27071507 GCTGCAACCGAGAGAGGAAAGGT
66 GCTACAACCGAGAGAGGAAA-GT
27071530 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
*
27071595 GCTGCAACCGAGAGAGGAAAGGT
66 GCTACAACCGAGAGAGGAAA-GT
27071618 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
*
27071683 GCTGCAACCGAGAGAGGAAAGGT
66 GCTACAACCGAGAGAGGAAA-GT
* ***** * * *** * **
27071706 TTGTGTCTTCGATCTGCTTCGCTGTTC--TGC--TATCTTTA-ACCAGCTCCACTACAATGAAG-
1 TTGTGTCTTCGATCTGCTTCGCTG-TCAATGCAGGAAGGCAAGATCTG-TTGTCTTCAA-CCAGC
* *** *** * **
27071765 --GGAGGCAA--G-G-CTTGTATCT
63 TCCGCTACAACCGAGAGAGGAAAGT
* * * ** * * * * *** * *
27071784 TCG-ATC--CGCTTAGCTGTCGATG-CAGGAAGGCA--ATA-TCTACTG-TCT-TCAACTAGC-T
1 TTGTGTCTTCGATCTGCT-TCGCTGTC---AATGCAGGA-AGGC-A-AGATCTGTTGTCT-TCAA
* ** ***
27071839 CCA-CTACAAC-CGAGGGA--G-GCA-AGGCTTGT
58 CCAGCT-C--CGCTA-CAACCGAG-AGAGGAAAGT
* * ** * * * * * * * * ** *
27071868 GTCT-TCGATCTGC-TTC-GCTGTCAAT-AC-AGGAAGGCAAGATC-TGTTGTCTTCAAC--CAG
1 -T-TGT-G-TCTTCGATCTGCT-TCGCTGTCAATGCAGG-AAG-GCAAGATCTGTT-GTCTTCAA
* ** * ** * ***
27071925 CTCTGCTACAAC--CGAGAGAGGAAAGGTTTGT
58 C-CAGCT-CCGCTACAACCGA-GAGAGGAAAGT
* * *
27071956 GTCT-TCGATCTG--C---TTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
1 TTGTGTC-TTC-GATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCT
** *
27072015 CTACTACAACCGAGAGAGGCAAGGT
64 CCGCTACAACCGAGAGAGG-AAAGT
* *
27072040 TTGTGTCTTCGATCTACTTCGC-GATCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTGTGTCTTCGATCTGCTTCGCTG-TCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
27072104 CGCTACAACCGAGAGAGGCAAGGT
65 CGCTACAACCGAGAGAGG-AAAGT
* * * ** *
27072128 TTGTGTCTTCGATTTGCTTCGCTGTCAATGCAGGAAGGTAAAATCTACTATCTTCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * * * *
27072193 ACTACAACGGAGGGAGGCAAGGG
66 GCTACAACCGAGAGAGG-AAAGT
* * * * ** *
27072216 TTGTATCTTCGATCCGCTTCGCTGTCGATGCAGGAAGGCAATATCTACTGTCTTCAACTAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * * *
27072281 ACTACAACCGAGGGAGGCAAGGC
66 GCTACAACCGAGAGAGG-AAAGT
* * * *
27072304 TTGTGTCTTCGATCCGCTTCGCTGTCGATTCAGGAAGGCAAGATCTGTTGTCATCAACCAGCTCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * *
27072369 ACTATAACCGAGAGAGGCAAGGT
66 GCTACAACCGAGAGAGG-AAAGT
* * *
27072392 TTGTGTCTTCGATCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTGTTGCCTTCAACCAGATCC
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * *
27072457 ACTACAATCGAGAGAGGCAAGGT
66 GCTACAACCGAGAGAGG-AAAGT
* * * *
27072480 TTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAAGTAAGATCTGTTGTCTTCAACCAGCTCT
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
*
27072545 ACTACAACCGAGAGA-GACAAGGT
66 GCTACAACCGAGAGAGGA-AA-GT
* * *
27072568 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTCTTTAACCAGCTCT
1 TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
* * *
27072633 GTTACAATCGAGAGAGGCAATGT
66 GCTACAACCGAGAGAGG-AAAGT
27072656 TTGTGTCTTCG
1 TTGTGTCTTCG
27072667 CTGATCTGTT
Statistics
Matches: 1303, Mismatches: 196, Indels: 156
0.79 0.12 0.09
Matches are distributed among these distances:
74 1 0.00
75 6 0.00
76 5 0.00
77 2 0.00
78 4 0.00
79 11 0.01
80 2 0.00
81 2 0.00
82 9 0.01
83 28 0.02
84 32 0.02
85 17 0.01
86 9 0.01
87 14 0.01
88 1151 0.88
89 8 0.01
90 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (87 bp):
TTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCC
GCTACAACCGAGAGAGGAAAGT
Found at i:27071218 original size:176 final size:176
Alignment explanation
Indices: 27070992--27072666 Score: 2197
Period size: 176 Copynumber: 9.6 Consensus size: 176
27070982 ACTGCTGAGG
* * * * * * * *
27070992 GAGGTAAGGCTTGTGTCTTCGATCTGCTTCTCTATCGATGCAGGAAGGCAAAATCTGCTATCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * * * *
27071057 AACCAGCTCCACTACAACCGAGGGAGGCAAAGCTTGTATCTTCGATAC-GCTTCGCTGCCGATGT
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGAT-CTGCTTCGCTGTCAATGC
** * *
27071121 AGGAAGGCAAGATCTACTGTCTTCAACCAGCTCTACTACAACCGAGG
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * *
27071168 GAGGCAAGGCTTGTGTTTTCGAT-TCGCTTCGCTGTCGATTCAGGAAGGCAAGATCTGTTGTCAT
1 GAGGCAAGGTTTGTGTCTTCGATCT-GCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTT
* *
27071232 CATCCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAATGC
65 CAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
***
27071297 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGTTACAACCGAGA
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * *
27071344 GAGGCAAGGTTTGTGTCTTTGATCTACTTCGTTGTCAATGAAAGAAGGCAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* *
27071409 AACCAGCTCCGCTACAACCGAGAGAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* *
27071474 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTGCAACCGAGA
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
*
27071520 GAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * *
27071585 AACCAGCTCCGCTGCAACCGAGAGAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* *
27071650 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTGCAACCGAGA
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* * *
27071696 GAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGT---T-C-----TGC--TATC-----T-TT-
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * * * *
27071743 AACCAGCTCCACTACAAT-GAAGGGAGGCAAGGCTTGTATCTTCGATCCGCTTAGCTGTCGATGC
66 AACCAGCTCCACTACAACCG-AGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
* ** * *
27071807 AGGAAGGCAATATCTACTGTCTTCAACTAGCTCCACTACAACCGAGG
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* *
27071854 GAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
** *
27071919 AACCAGCTCTGCTACAACCGAGAGAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
27071984 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTACTACAACCGAGA
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* *
27072030 GAGGCAAGGTTTGTGTCTTCGATCTACTTCGC-GATCAATGCAAGAAGGCAAGATCTGTTGTCTT
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTG-TCAATGCAGGAAGGCAAGATCTGTTGTCTT
* *
27072094 CAACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATTTGCTTCGCTGTCAATGC
65 CAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
* * ** * * *
27072159 AGGAAGGTAAAATCTACTATCTTCAACCAGCTCCACTACAACGGAGG
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * * **
27072206 GAGGCAAGGGTTGTATCTTCGATCCGCTTCGCTGTCGATGCAGGAAGGCAATATCTACTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * * *
27072271 AACTAGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCCGCTTCGCTGTCGATTCA
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* *
27072336 GGAAGGCAAGATCTGTTGTCATCAACCAGCTCCACTATAACCGAGA
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* *
27072382 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTGTTGCCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * *
27072447 AACCAGATCCACTACAATCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACA
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* * *
27072512 GGAAAGTAAGATCTGTTGTCTTCAACCAGCTCTACTACAACCGAGA
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
* * *
27072558 GAGACAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTCTTT
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
*** * *
27072623 AACCAGCTCTGTTACAATCGAGAGAGGCAATGTTTGTGTCTTCG
66 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCG
27072667 CTGATCTGTT
Statistics
Matches: 1315, Mismatches: 159, Indels: 50
0.86 0.10 0.03
Matches are distributed among these distances:
157 1 0.00
158 125 0.10
159 2 0.00
160 1 0.00
161 1 0.00
162 1 0.00
165 3 0.00
167 4 0.00
169 3 0.00
172 1 0.00
173 1 0.00
174 1 0.00
175 5 0.00
176 1163 0.88
177 3 0.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (176 bp):
GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
Found at i:27071399 original size:264 final size:264
Alignment explanation
Indices: 27070992--27072666 Score: 2206
Period size: 264 Copynumber: 6.4 Consensus size: 264
27070982 ACTGCTGAGG
* * * * * * * *
27070992 GAGGTAAGGCTTGTGTCTTCGATCTGCTTCTCTATCGATGCAGGAAGGCAAAATCTGCTATCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * * * * *
27071057 AACCAGCTCCACTACAACCGAGGGAGGCAAAGCTTGTATCTTCGATAC-GCTTCGCTGCCGATGT
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGAT-CTGCTTCGCTGTCAATGC
** * * * * *
27071121 AGGAAGGCAAGATCTACTGTCTTCAACCAGCTCTACTACAACCGAGGGAGGCAAGGCTTGTGTTT
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCT
* * * *
27071186 TCGAT-TCGCTTCGCTGTCGATTCAGGAAGGCAAGATCTGTTGTCATCATCCAGCTCCACTACAA
195 TCGATCT-GCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
27071250 CCGAGA
259 CCGAGA
*
27071256 GAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * * *
27071321 AACCAGCTCTGTTACAACCGAGAGAGGCAAGGTTTGTGTCTTTGATCTACTTCGTTGTCAATGAA
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* *
27071386 AGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTACAACCGAGAGAGGAAAGGTTTGTGTCTT
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCTT
* *
27071451 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTGCAACC
196 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
27071516 GAGA
261 GAGA
*
27071520 GAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* *
27071585 AACCAGCTCCGCTGCAACCGAGAGAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* *
27071650 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCGCTGCAACCGAGAGAGGAAAGGTTTGTGTCTT
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCTT
* * *
27071715 CGATCTGCTTCGCTGT---T-C-----TGC--TATC-----T-TT-AACCAGCTCCACTACAA-T
196 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
*
27071761 GAAGG
261 G-AGA
* * * * * * **
27071766 GAGGCAAGGCTTGTATCTTCGATCCGCTTAGCTGTCGATGCAGGAAGGCAATATCTACTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * * *
27071831 AACTAGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATACA
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
**
27071896 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAGAGGAAAGGTTTGTGTCTT
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCTT
*
27071961 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTACTACAACC
196 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
27072026 GAGA
261 GAGA
* *
27072030 GAGGCAAGGTTTGTGTCTTCGATCTACTTCGC-GATCAATGCAAGAAGGCAAGATCTGTTGTCTT
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTG-TCAATGCAGGAAGGCAAGATCTGTTGTCTT
*
27072094 CAACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATTTGCTTCGCTGTCAATGC
65 CAACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
* * ** * * * * * *
27072159 AGGAAGGTAAAATCTACTATCTTCAACCAGCTCCACTACAACGGAGGGAGGCAAGGGTTGTATCT
130 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCT
* * * ** *
27072224 TCGATCCGCTTCGCTGTCGATGCAGGAAGGCAATATCTACTGTCTTCAACTAGCTCCACTACAAC
195 TCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAAC
*
27072289 CGAGG
260 CGAGA
* * * * *
27072294 GAGGCAAGGCTTGTGTCTTCGATCCGCTTCGCTGTCGATTCAGGAAGGCAAGATCTGTTGTCATC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * *
27072359 AACCAGCTCCACTATAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTATCAATGCA
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
* * * *
27072424 GGAAGGCAAGATCTGTTGCCTTCAACCAGATCCACTACAATCGAGAGAGGCAAGGTTTGTGTCTT
131 GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCTT
* * * *
27072489 CGATCTGCTTCGCTGTCAATACAGGAAAGTAAGATCTGTTGTCTTCAACCAGCTCTACTACAACC
196 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
27072554 GAGA
261 GAGA
* * *
27072558 GAGACAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGTAAGATCTGTTGTCTTT
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
* * * *
27072623 AACCAGCTCTGTTACAATCGAGAGAGGCAATGTTTGTGTCTTCG
66 AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCG
27072667 CTGATCTGTT
Statistics
Matches: 1225, Mismatches: 162, Indels: 48
0.85 0.11 0.03
Matches are distributed among these distances:
245 1 0.00
246 210 0.17
247 2 0.00
248 1 0.00
249 1 0.00
250 1 0.00
253 3 0.00
255 4 0.00
257 3 0.00
260 1 0.00
261 1 0.00
262 1 0.00
263 4 0.00
264 989 0.81
265 3 0.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (264 bp):
GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTC
AACCAGCTCCGCTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGAAAGGTTTGTGTCTT
CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
GAGA
Found at i:27071903 original size:44 final size:44
Alignment explanation
Indices: 27071855--27072605 Score: 148
Period size: 44 Copynumber: 17.1 Consensus size: 44
27071845 CAACCGAGGG
*
27071855 AGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
1 AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * *
27071899 AGGCAA-GATCTGTTGTCTTCAACCAGC-TCTGCT-AC-A-ACCGAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTC-GCTGTCAATACAG-GA
* * *
27071942 GAGGAAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * *
27071987 AGGCAA-GATCTGTTGTCTTCAACCAGC-TCTACT-AC-A-ACCGAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTC-GCTGTCAATACAG-GA
* * * *
27072030 GAGGCAAGGTTTGTGTCTTCGATCTACTTCGC-GATCAATGCAAGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTG-TCAATACAGGA
* * * * * *
27072075 AGGCAA-GATCTGTTGTCTTCAACCAGCTCCGCT-AC-A-ACCGAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTCGCTGTCAATACAG-GA
* * *
27072118 GAGGCAAGGTTTGTGTCTTCGATTTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * * * * * * *** *
27072163 AGGTAA-AATCTACTATCTTCAACCAGCTCCACT-ACAACGGAGGG
1 AGGCAAGGAT-T-GTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * *
27072207 AGGCAAGGGTTGTATCTTCGATCCGCTTCGCTGTCGATGCAGGA
1 AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * * * *
27072251 AGGCAA-TATCTACTGTCTTC-AACTAGCTCCACT-ACAA-CCGAGGG
1 AGGCAAGGAT-T-GTGTCTTCGATCT-GCTTCGCTGTCAATAC-AGGA
* * * *
27072295 AGGCAAGGCTTGTGTCTTCGATCCGCTTCGCTGTCGATTCAGGA
1 AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * * * *
27072339 AGGCAA-GATCTGTTGTCATCAACCAGCTCCACTAT--A-ACCGAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTCGCTGTCAATACAG-GA
* * *
27072382 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTATCAATGCAGGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * * * *
27072427 AGGCAA-GATCTGTTGCCTTCAACCAGATCCACT-ACAAT-C-GAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTCGCTGTCAATACAG-GA
*
27072470 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
* * * * * * * *
27072515 AAGTAA-GATCTGTTGTCTTCAACCAGC-TCTACT-AC-A-ACCGAGA
1 AGGCAAGGAT-TG-TGTCTTCGATCTGCTTC-GCTGTCAATACAG-GA
* * *
27072558 GAGACAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
27072603 AGG
1 AGG
27072606 TAAGATCTGT
Statistics
Matches: 477, Mismatches: 162, Indels: 136
0.62 0.21 0.18
Matches are distributed among these distances:
42 12 0.03
43 143 0.30
44 172 0.36
45 140 0.29
46 10 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (44 bp):
AGGCAAGGATTGTGTCTTCGATCTGCTTCGCTGTCAATACAGGA
Found at i:27073909 original size:19 final size:19
Alignment explanation
Indices: 27073887--27073923 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
27073877 CCTTGGCCTC
*
27073887 TCCTTTTTCTCTTTTTTTT
1 TCCTTTTTCCCTTTTTTTT
27073906 TCCTTTTTCCCTTTTTTT
1 TCCTTTTTCCCTTTTTTT
27073924 AGTTTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TCCTTTTTCCCTTTTTTTT
Found at i:27076312 original size:19 final size:17
Alignment explanation
Indices: 27076290--27076332 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 17
27076280 GTGAAATTTG
27076290 ATGCATGCAATGAAATGCA
1 ATGCATGC-ATGAAATG-A
27076309 ATGCAGATGCATGAAATGA
1 ATGC--ATGCATGAAATGA
27076328 ATGCA
1 ATGCA
27076333 AAAAGAGACG
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
19 9 0.41
20 8 0.36
21 4 0.18
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (17 bp):
ATGCATGCATGAAATGA
Found at i:27077980 original size:111 final size:110
Alignment explanation
Indices: 27077747--27078272 Score: 768
Period size: 111 Copynumber: 4.9 Consensus size: 110
27077737 ATATTTGGCT
* * * ** * *
27077747 ATTTGGTTAAACGAG--AAATCGAAACTCAGCACCTTAGGGTA-CATTCCTCAAATTT-CCAAAC
1 ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
* *
27077808 GCAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTTAGCC
66 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
*
27077853 ATTTGGTTGAATGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
*
27077918 GCAAAACATTACCTTATTTTAAAATTTTTTAAAAGGATATTAAGCC
66 GCAAAACATTGCCTTATTTTAAAA-TTTTTAAAAGGATATTAAGCC
* *
27077964 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
*
27078029 ACAAAACATTGCCTTATTTTAAAATTTTTTAAAAGGATATTAAGCC
66 GCAAAACATTGCCTTATTTTAAAA-TTTTTAAAAGGATATTAAGCC
27078075 ATTTGGTTGAACGAGAAAAATCG--A--CA-C-CCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
27078134 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
66 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
* * *
27078179 ATTTGGTTGAACGAGAAAAATCGACACCTAGCACCTTAGGGCATGTTTTCTCGAATTT-CCAAAT
1 ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
** *
27078243 ATAAAACATTGCCTTATTTGAAAAATTTTT
66 GCAAAACATTGCCTTATTT-TAAAATTTTT
27078273 CGTTTTTGAT
Statistics
Matches: 385, Mismatches: 23, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
104 44 0.11
105 54 0.14
106 15 0.04
107 2 0.01
108 25 0.06
109 34 0.09
110 62 0.16
111 149 0.39
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (110 bp):
ATTTGGTTGAACGAGAAAAATCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
Found at i:27078218 original size:215 final size:218
Alignment explanation
Indices: 27077747--27078272 Score: 791
Period size: 215 Copynumber: 2.4 Consensus size: 218
27077737 ATATTTGGCT
* * ** * *
27077747 ATTTGGTTAAACGAG--AAATCGA-AACTCAGCACCTTAGGGTA-CATTCCTCAAATTTCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCT-AGCACCTTAGGGTATGTTTTCTCGAATTTCCAAAC
* * * *
27077808 GCAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAAAAA
65 ACAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAA
27077873 TCGAAACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTACCTTATTTT
130 TCG-AA-CCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTACCTTATTTT
27077938 AAAATTTTTTAAAAGGATATTAAGCC
193 AAAATTTTTTAAAAGGATATTAAGCC
*
27077964 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAACGAGAAAAATCGACACCTAGCACCTTAGGGTATGTTTTCTCGAATTT-CCAAAC
27078029 ACAAAACATTGCCTTATTTTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAA
65 ACAAAACATTGCCTTATTTTAAAA-TTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAA
*
27078094 ATCG-A-CA-C-CCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTA
129 ATCGAACCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTACCTTATTTTA
27078155 AAA-TTTTTAAAAGGATATTAAGCC
194 AAATTTTTTAAAAGGATATTAAGCC
* *
27078179 ATTTGGTTGAACGAGAAAAATCGACACCTAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAATA
1 ATTTGGTTGAACGAGAAAAATCGACACCTAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACA
* *
27078244 TAAAACATTGCCTTATTTGAAAAATTTTT
66 CAAAACATTGCCTTATTT-TAAAATTTTT
27078273 CGTTTTTGAT
Statistics
Matches: 285, Mismatches: 17, Indels: 17
0.89 0.05 0.05
Matches are distributed among these distances:
214 28 0.10
215 81 0.28
216 55 0.19
217 15 0.05
218 2 0.01
219 21 0.07
220 13 0.05
221 28 0.10
222 42 0.15
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (218 bp):
ATTTGGTTGAACGAGAAAAATCGACACCTAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACA
CAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAAT
CGAACCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTACCTTATTTTAAA
ATTTTTTAAAAGGATATTAAGCC
Found at i:27078413 original size:18 final size:17
Alignment explanation
Indices: 27078382--27078420 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
27078372 ATATATAATG
*
27078382 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
27078399 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
27078417 AAAA
1 AAAA
27078421 AATTAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:27078794 original size:3 final size:3
Alignment explanation
Indices: 27078788--27078819 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
27078778 AGGTAATAAT
27078788 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
27078820 TAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:27080074 original size:18 final size:17
Alignment explanation
Indices: 27080024--27080076 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
27080014 GTCTGCTAGG
*
27080024 TTTGTATTGTTTTTGGGT
1 TTTGTATTG-TATTGGGT
**
27080042 TCTTGGGTTGTATTGGGT
1 T-TTGTATTGTATTGGGT
27080060 TTTGTATTGTAATTGGG
1 TTTGTATTGT-ATTGGG
27080077 CTCGGGTTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 7 0.25
18 15 0.54
19 6 0.21
ACGTcount: A:0.09, C:0.02, G:0.32, T:0.57
Consensus pattern (17 bp):
TTTGTATTGTATTGGGT
Found at i:27083293 original size:15 final size:15
Alignment explanation
Indices: 27083257--27083286 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27083247 CAGAATTTAT
*
27083257 ACGAATCATATCTTA
1 ACGAATCATATCATA
27083272 ACGAATCATATCATA
1 ACGAATCATATCATA
27083287 TTGAATCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (15 bp):
ACGAATCATATCATA
Found at i:27083999 original size:49 final size:47
Alignment explanation
Indices: 27083894--27084018 Score: 128
Period size: 49 Copynumber: 2.7 Consensus size: 47
27083884 TTTTACACGA
*
27083894 CCGTGTGCCACACAC-GTCTAGCAACACGGCCTACAGAGTCTCACAG
1 CCGTGTGCCACACACGGTCTAGCAACACGGCCTACAAAGTCTCACAG
* * * * * * *
27083940 TCATGTGCCACACACGGTCTGGCCACATGGTCTGCAAAGTCTCACACAG
1 CCGTGTGCCACACACGGTCTAGCAACACGGCCTACAAAGTCT--CACAG
* *
27083989 CCGTGTGCCACACATGGTCTA-CCACACGGC
1 CCGTGTGCCACACACGGTCTAGCAACACGGC
27084019 TTGACACACG
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
46 13 0.21
47 20 0.32
48 7 0.11
49 22 0.35
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (47 bp):
CCGTGTGCCACACACGGTCTAGCAACACGGCCTACAAAGTCTCACAG
Found at i:27086144 original size:30 final size:32
Alignment explanation
Indices: 27086084--27086149 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
27086074 ATTTTTTAAT
* * *
27086084 AAGTTCAGGTACTAATTAGGTACTTTTTGGAC
1 AAGTGCAGGTACTAACTAAGTACTTTTTGGAC
27086116 AAGTGCAGGTA-TAACTAAGTAC-TTTTGGAC
1 AAGTGCAGGTACTAACTAAGTACTTTTTGGAC
27086146 AAGT
1 AAGT
27086150 TCAGAGGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 12 0.39
31 9 0.29
32 10 0.32
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (32 bp):
AAGTGCAGGTACTAACTAAGTACTTTTTGGAC
Found at i:27089221 original size:55 final size:58
Alignment explanation
Indices: 27089136--27089252 Score: 168
Period size: 57 Copynumber: 2.1 Consensus size: 58
27089126 ATAAATGGTA
* * *
27089136 AAAATGGTGAAATAGGAAACATTTGGAAATG-AT-TATTTTTCTCCAAAATGGAAATG
1 AAAATGGAGAAATAGGAAACATTTGGAAATGAATGTAGTTTTCTCCAAAATGAAAATG
* *
27089192 AAAATGGAGAAAT-GGAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATG
1 AAAATGGAGAAATAGGAAACATTTGGAAATGAATGTAGTTTTCTCCAAAATGAAAATG
27089249 AAAA
1 AAAA
27089253 ATGAAAAAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
55 16 0.30
56 14 0.26
57 24 0.44
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (58 bp):
AAAATGGAGAAATAGGAAACATTTGGAAATGAATGTAGTTTTCTCCAAAATGAAAATG
Found at i:27091515 original size:18 final size:17
Alignment explanation
Indices: 27091489--27091523 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27091479 AAAAGATGGG
*
27091489 AAGAGAAAAGAGAAAAGA
1 AAGAAAAAAGA-AAAAGA
27091507 AAGAAAAAAGAAAAAGA
1 AAGAAAAAAGAAAAAGA
27091524 TTTTGGAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAGAAAAAGA
Found at i:27094562 original size:27 final size:27
Alignment explanation
Indices: 27094532--27094890 Score: 212
Period size: 27 Copynumber: 13.3 Consensus size: 27
27094522 ATTCGTGGGC
*
27094532 AAATTATCGAAATACCCTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * **
27094559 AAATTACCGAAATACCCTTAAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
27094586 AAATTATCAAAATACCCTCGATGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * * * *
27094613 AAATTACCAAAATACCCTTGAGGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
27094640 AAATGACCAAAATACCCTCAAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
27094667 AAATGATCAAAATATCCTCGATGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * * * *
27094694 AAATGACCAAAATACCCTTGTAGGGTC
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
27094721 AAATGACCGTAATGCCC-CTGTAA-GGTA
1 AAATGATCGAAATACCCTC-G-AAGGGTA
* * * *
27094748 AAAT-AACTGTAATACCCCCGTAGGGTA
1 AAATGATC-GAAATACCCTCGAAGGGTA
* *
27094775 AAATGA-CTGAAA-AACCT-TATAGGGTA
1 AAATGATC-GAAATACCCTCGA-AGGGTA
* * * * *
27094801 AAATGGTCGTAATGCCCTTGTAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
27094828 AAATAATCGTAATACCC-CCATAGGGTA
1 AAATGATCGAAATACCCTCGA-AGGGTA
* *
27094855 AAATGATCGAAATACCC-CTATAAGGTA
1 AAATGATCGAAATACCCTCGA-AGGGTA
27094882 AAATGATCG
1 AAATGATCG
27094891 TAATGCCCGT
Statistics
Matches: 266, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 20 0.08
27 243 0.91
28 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
AAATGATCGAAATACCCTCGAAGGGTA
Found at i:27094590 original size:54 final size:54
Alignment explanation
Indices: 27094532--27094871 Score: 238
Period size: 54 Copynumber: 6.3 Consensus size: 54
27094522 ATTCGTGGGC
* *
27094532 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTTAAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
* * * * * * *
27094586 AAATTATCAAAATACCCTCGATGGGTAAAATTACCAAAATACCCTTGAGGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
* * * * * * ** *
27094640 AAATGACCAAAATACCCTCAAAGGGTAAAATGATCAAAATATCCTCGATGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
* * * * * * *
27094694 AAATGACCAAAATACCCTTGTAGGGTCAAATGACCGTAATGCCCCTGT-AA-GGTA
1 AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAAT-ACCCT-TAAAGGGTA
* * * * * * *
27094748 AAAT-AACTGTAATACCCCCGTAGGGTAAAATGACTGAAA-AACCTTATAGGGTA
1 AAATGATC-GAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
* * * * * * * * ** *
27094801 AAATGGTCGTAATGCCCTTGTAGGGTAAAATAATCGTAATACCCCCATAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
27094855 AAATGATCGAAATACCC
1 AAATGATCGAAATACCC
27094872 CTATAAGGTA
Statistics
Matches: 228, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
51 1 0.00
52 4 0.02
53 34 0.15
54 185 0.81
55 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (54 bp):
AAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTA
Found at i:27094667 original size:81 final size:80
Alignment explanation
Indices: 27094532--27094728 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 80
27094522 ATTCGTGGGC
* * * * * * *
27094532 AAATTATCGAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTTAAAGGGTAAAATTATCAAA
1 AAATTACCAAAATACCCTTG-AGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGATCAAA
27094597 ATACCCTCGATGGGTA
65 ATACCCTCGATGGGTA
27094613 AAATTACCAAAATACCCTTGAGGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGATCAAA
1 AAATTACCAAAATACCCTTGA-GGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGATCAAA
*
27094678 ATATCCTCGATGGGTA
65 ATACCCTCGATGGGTA
* *
27094694 AAATGACCAAAATACCCTTGTAGGGTCAAATGACC
1 AAATTACCAAAATACCCTTG-AGGGTAAAATGACC
27094729 GTAATGCCCC
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.98
82 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGAGGGTAAAATGACCAAAATACCCTCAAAGGGTAAAATGATCAAAA
TACCCTCGATGGGTA
Found at i:27094748 original size:81 final size:81
Alignment explanation
Indices: 27094582--27094898 Score: 272
Period size: 81 Copynumber: 3.9 Consensus size: 81
27094572 ACCCTTAAAG
* * *
27094582 GGTAAAATTATCAAAATACCCTCGAT-GGGTAAAATTACCAAAATACCCTTGA-GGGGTAAAATG
1 GGTAAAA-TATCAAAATACCCCCGATAGGGTAAAATGACCAAAATACCCTT-ATAGGGTAAAATG
** * **
27094645 ACCAAAAT-ACCCTCAAA
64 ACCGTAATGCCCCTGTAA
* * * *
27094662 GGGTAAAATGATCAAAATATCCTCGAT-GGGTAAAATGACCAAAATACCCTTGTAGGGTCAAATG
1 -GGTAAAAT-ATCAAAATACCCCCGATAGGGTAAAATGACCAAAATACCCTTATAGGGTAAAATG
27094726 ACCGTAATGCCCCTGTAA
64 ACCGTAATGCCCCTGTAA
* ** *
27094744 GGTAAAATAACTGTAATACCCCCG-TAGGGTAAAATGACTGAAAA-A-CCTTATAGGGTAAAATG
1 GGTAAAATATC-AAAATACCCCCGATAGGGTAAAATGAC-CAAAATACCCTTATAGGGTAAAATG
** * *
27094806 GTCGTAATGCCCTTGTAG
64 ACCGTAATGCCCCTGTAA
** * * * *
27094824 GGTAAAATAATCGTAATACCCCC-ATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGA
1 GGTAAAAT-ATCAAAATACCCCCGATAGGGTAAAATGACCAAAATACCCTTATAGGGTAAAATGA
*
27094888 TCGTAATGCCC
65 CCGTAATGCCC
27094899 GTAGAGGGTA
Statistics
Matches: 197, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
79 3 0.02
80 66 0.34
81 118 0.60
82 10 0.05
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (81 bp):
GGTAAAATATCAAAATACCCCCGATAGGGTAAAATGACCAAAATACCCTTATAGGGTAAAATGAC
CGTAATGCCCCTGTAA
Found at i:27094816 original size:80 final size:80
Alignment explanation
Indices: 27094689--27094898 Score: 255
Period size: 80 Copynumber: 2.6 Consensus size: 80
27094679 TATCCTCGAT
* * * *
27094689 GGGTAAAATGAC-CAAAATACCCTTGTAGGGTCAAATGACCGTAATGCCCCTGTAAGGTAAAATA
1 GGGTAAAATGACTGAAAA-A-CCTTATAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATA
*
27094753 A-CTGTAATACCCCCGTA
64 ATC-GTAATACCCCCATA
* * *
27094770 GGGTAAAATGACTGAAAAACCTTATAGGGTAAAATGGTCGTAATGCCCTTGTAGGGTAAAATAAT
1 GGGTAAAATGACTGAAAAACCTTATAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATAAT
27094835 CGTAATACCCCCATA
66 CGTAATACCCCCATA
* * *
27094850 GGGTAAAATGA-TCGAAATACCCCTATAAGGTAAAATGATCGTAATGCCC
1 GGGTAAAATGACT-GAAA-AACCTTATAGGGTAAAATGATCGTAATGCCC
27094899 GTAGAGGGTA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 67 0.59
81 41 0.36
82 4 0.04
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (80 bp):
GGGTAAAATGACTGAAAAACCTTATAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATAAT
CGTAATACCCCCATA
Found at i:27094907 original size:54 final size:54
Alignment explanation
Indices: 27094795--27094910 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
27094785 AAAACCTTAT
* * * * * * *
27094795 AGGGTAAAATGGTCGTAATGCCCTTGTAGGGTAAAATAATCGTAATACCCCCAT
1 AGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATAATCGTAATACCCCCAG
* * **
27094849 AGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGATCGTAATGCCCGTAG
1 AGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATAATCGTAATACCCCCAG
27094903 AGGGTAAA
1 AGGGTAAA
27094911 TGACTATTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (54 bp):
AGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATAATCGTAATACCCCCAG
Found at i:27094968 original size:24 final size:24
Alignment explanation
Indices: 27094931--27094979 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
27094921 TCCCCTCGAG
* *
27094931 TGTAAATGATTGATTTGTCCATGA
1 TGTAAATAACTGATTTGTCCATGA
*
27094955 TGTAAATAACTGATTTGTCTATGA
1 TGTAAATAACTGATTTGTCCATGA
27094979 T
1 T
27094980 TGGTATGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (24 bp):
TGTAAATAACTGATTTGTCCATGA
Found at i:27094990 original size:24 final size:24
Alignment explanation
Indices: 27094963--27095017 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
27094953 GATGTAAATA
27094963 ACTGATTTGTCTATGATTGGTATG
1 ACTGATTTGTCTATGATTGGTATG
* *
27094987 ACTGATTTGTCTGTGATTTGTATG
1 ACTGATTTGTCTATGATTGGTATG
27095011 ACTGATT
1 ACTGATT
27095018 CTGAGCATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.47
Consensus pattern (24 bp):
ACTGATTTGTCTATGATTGGTATG
Found at i:27095161 original size:26 final size:26
Alignment explanation
Indices: 27095132--27095185 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
27095122 TTTGCCACAT
27095132 ATACTATTACGGGCAGCTTTGCAGCG
1 ATACTATTACGGGCAGCTTTGCAGCG
* * * *
27095158 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTATTACGGGCAGCTTTGCAGCG
27095184 AT
1 AT
27095186 GCTAATGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (26 bp):
ATACTATTACGGGCAGCTTTGCAGCG
Found at i:27095197 original size:26 final size:26
Alignment explanation
Indices: 27095143--27095197 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
27095133 TACTATTACG
** *
27095143 GGCAGCTTTGCAGCGATACTGTTGCT
1 GGCAGCTTTGCAGCGATACTAATGAT
* *
27095169 GGCAGCTTTGCTGCGATGCTAATGAT
1 GGCAGCTTTGCAGCGATACTAATGAT
27095195 GGC
1 GGC
27095198 TTTGTGCCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (26 bp):
GGCAGCTTTGCAGCGATACTAATGAT
Found at i:27095348 original size:22 final size:22
Alignment explanation
Indices: 27095336--27095386 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
27095326 TGTAGTCATT
27095336 CTATTTATAGCTTATAGCTATC
1 CTATTTATAGCTTATAGCTATC
*
27095358 CTGTTTATAGCTTATAGCTATC
1 CTATTTATAGCTTATAGCTATC
*
27095380 CTGTTTA
1 CTATTTA
27095387 CGGCTCTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (22 bp):
CTATTTATAGCTTATAGCTATC
Found at i:27101883 original size:19 final size:19
Alignment explanation
Indices: 27101861--27101897 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
27101851 ATTTAACCGT
*
27101861 TTTTATTTTATTTTTATAA
1 TTTTATTTTAATTTTATAA
*
27101880 TTTTGTTTTAATTTTATA
1 TTTTATTTTAATTTTATA
27101898 TTCACATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (19 bp):
TTTTATTTTAATTTTATAA
Found at i:27105124 original size:13 final size:13
Alignment explanation
Indices: 27105106--27105130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27105096 AAGGATGTTC
27105106 ACACACGGCCTAG
1 ACACACGGCCTAG
27105119 ACACACGGCCTA
1 ACACACGGCCTA
27105131 ATTTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.40, G:0.20, T:0.08
Consensus pattern (13 bp):
ACACACGGCCTAG
Found at i:27105864 original size:17 final size:16
Alignment explanation
Indices: 27105795--27105865 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 16
27105785 TTCATTTACC
*
27105795 TTATTATTTATTTTTT
1 TTATTATTTATATTTT
*
27105811 TTATT-TTATCATAATTT
1 TTATTATT-T-ATATTTT
27105828 TTATTA-TTATATTTAGT
1 TTATTATTTATATTT--T
*
27105845 TTATTATTTATTTTTAT
1 TTATTATTTATATTT-T
27105862 TTAT
1 TTAT
27105866 ATTCTTATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
15 7 0.16
16 7 0.16
17 23 0.52
18 7 0.16
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (16 bp):
TTATTATTTATATTTT
Found at i:27105945 original size:19 final size:19
Alignment explanation
Indices: 27105921--27105959 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
27105911 TTCTTATTCC
27105921 TATTTAATACATTATTATT
1 TATTTAATACATTATTATT
* **
27105940 TATTTATTTTATTATTATT
1 TATTTAATACATTATTATT
27105959 T
1 T
27105960 TCATTATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTAATACATTATTATT
Found at i:27107594 original size:18 final size:18
Alignment explanation
Indices: 27107567--27107611 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
27107557 CTTTAGTTTA
*
27107567 TTTTTCTTTTGA-GCTATG
1 TTTTTATTTTGATGCT-TG
*
27107585 TTTTTATTTTGATGGTTG
1 TTTTTATTTTGATGCTTG
27107603 TTTTTATTT
1 TTTTTATTT
27107612 GATTTTGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.11, C:0.04, G:0.16, T:0.69
Consensus pattern (18 bp):
TTTTTATTTTGATGCTTG
Found at i:27114475 original size:21 final size:21
Alignment explanation
Indices: 27114449--27114497 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
27114439 TCCAGCCACT
27114449 ACAGAATAG-AAGAACAAAGAA
1 ACAGAATAGAAAGAACAAA-AA
* * *
27114470 ACAGAAGAGAAAGAAGAGAAA
1 ACAGAATAGAAAGAACAAAAA
27114491 ACAGAAT
1 ACAGAAT
27114498 CAGTGAACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.65, C:0.08, G:0.22, T:0.04
Consensus pattern (21 bp):
ACAGAATAGAAAGAACAAAAA
Found at i:27118189 original size:20 final size:21
Alignment explanation
Indices: 27118164--27118211 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
27118154 AGAGAATTTG
27118164 GAGCAAAAAG-AGCGAAAAAC
1 GAGCAAAAAGAAGCGAAAAAC
*
27118184 GAGC-AAAAGAAGCGAAAAAT
1 GAGCAAAAAGAAGCGAAAAAC
27118204 GAGCAAAA
1 GAGCAAAA
27118212 CTCAGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 5 0.20
20 17 0.68
21 3 0.12
ACGTcount: A:0.60, C:0.12, G:0.25, T:0.02
Consensus pattern (21 bp):
GAGCAAAAAGAAGCGAAAAAC
Found at i:27136957 original size:22 final size:22
Alignment explanation
Indices: 27136929--27136970 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
27136919 TCATATTTTT
27136929 AAATCTCTCTCGAATTTCTCTC
1 AAATCTCTCTCGAATTTCTCTC
*
27136951 AAATCTCTCTTGAATTTCTC
1 AAATCTCTCTCGAATTTCTC
27136971 ACTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATCTCTCTCGAATTTCTCTC
Found at i:27139771 original size:30 final size:30
Alignment explanation
Indices: 27139735--27139797 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
27139725 TGGACCTTTG
*
27139735 ATTATCTTATTTTGTTTATGTTCTTACATA
1 ATTATCTTATTTTGTTTATGTCCTTACATA
27139765 ATTATCTTATTTTGTTTATGTCCTTACATA
1 ATTATCTTATTTTGTTTATGTCCTTACATA
27139795 ATT
1 ATT
27139798 TTTGTTATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.11, G:0.06, T:0.59
Consensus pattern (30 bp):
ATTATCTTATTTTGTTTATGTCCTTACATA
Found at i:27139984 original size:26 final size:26
Alignment explanation
Indices: 27139948--27140003 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
27139938 GTTGGTGAAA
27139948 CTATTGCTACTTTGGTCGGCATGTAC
1 CTATTGCTACTTTGGTCGGCATGTAC
*
27139974 CTATTGCTACTTTGGTTGGCATGTAC
1 CTATTGCTACTTTGGTCGGCATGTAC
27140000 CTAT
1 CTAT
27140004 AGGATTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.41
Consensus pattern (26 bp):
CTATTGCTACTTTGGTCGGCATGTAC
Found at i:27141234 original size:29 final size:29
Alignment explanation
Indices: 27141192--27141253 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
27141182 GCATTTCCAG
*
27141192 AAATTTGATCAACCTCAACCACCCGTAAA
1 AAATCTGATCAACCTCAACCACCCGTAAA
27141221 AAATCTGATCAACCTCAACCACCCGTAAA
1 AAATCTGATCAACCTCAACCACCCGTAAA
27141250 AAAT
1 AAAT
27141254 GCACTGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.44, C:0.31, G:0.06, T:0.19
Consensus pattern (29 bp):
AAATCTGATCAACCTCAACCACCCGTAAA
Found at i:27141535 original size:23 final size:23
Alignment explanation
Indices: 27141508--27141553 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
27141498 AAAAATTATT
*
27141508 AAAAA-TCTAAAGAATATATAAAA
1 AAAAACTCTAAA-AATATACAAAA
*
27141531 AAAAACTTTAAAAATATACAAAA
1 AAAAACTCTAAAAATATACAAAA
27141554 CCCTAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAACTCTAAAAATATACAAAA
Found at i:27147108 original size:23 final size:24
Alignment explanation
Indices: 27147072--27147120 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
27147062 ATCAGTACAG
27147072 GACAAAATTAAAGTGCGTAAT-GA
1 GACAAAATTAAAGTGCGTAATAGA
* *
27147095 GACAACATTGAAGTGCGTAATAGA
1 GACAAAATTAAAGTGCGTAATAGA
27147119 GA
1 GA
27147121 GTGCGCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.20
Consensus pattern (24 bp):
GACAAAATTAAAGTGCGTAATAGA
Found at i:27148588 original size:89 final size:90
Alignment explanation
Indices: 27148423--27148607 Score: 345
Period size: 89 Copynumber: 2.1 Consensus size: 90
27148413 ATCATTACAC
*
27148423 TTTTTATAATTATCTAACTCAAATATTTACCATTTTGTCCTTTAACTTTTTCTATAATACCATGT
1 TTTTCATAATTATCTAACTCAAATATTTACCATTTTGTCCTTTAACTTTTTCTATAATACCATGT
27148488 ATGATTCATTCTTTCTTTTGGTAAA
66 ATGATTCATTCTTTCTTTTGGTAAA
*
27148513 TTTTCATAATTATCTAACTCAAATATTTTCCATTTTGTCC-TTAACTTTTTCTATAATACCATGT
1 TTTTCATAATTATCTAACTCAAATATTTACCATTTTGTCCTTTAACTTTTTCTATAATACCATGT
27148577 ATGATTCATTCTTTCTTTTGGTAAA
66 ATGATTCATTCTTTCTTTTGGTAAA
27148602 TTTTCA
1 TTTTCA
27148608 CCTCTAGTCC
Statistics
Matches: 93, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
89 55 0.59
90 38 0.41
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.51
Consensus pattern (90 bp):
TTTTCATAATTATCTAACTCAAATATTTACCATTTTGTCCTTTAACTTTTTCTATAATACCATGT
ATGATTCATTCTTTCTTTTGGTAAA
Found at i:27150469 original size:28 final size:28
Alignment explanation
Indices: 27150433--27150556 Score: 149
Period size: 28 Copynumber: 4.4 Consensus size: 28
27150423 AATAAGGAAC
*
27150433 AAAACTATAAAATATGAAAAATAGGGGT
1 AAAATTATAAAATATGAAAAATAGGGGT
* * * *
27150461 AAAATTATAAAATCTAAAAAAATATGGGC
1 AAAATTATAAAATAT-GAAAAATAGGGGT
* * *
27150490 AAAATTATAAATTTTGAAAAATAAGGGT
1 AAAATTATAAAATATGAAAAATAGGGGT
*
27150518 AAAATTATAATATATGAAAAATAGGGGAT
1 AAAATTATAAAATATGAAAAATAGGGG-T
27150547 AAAATTATAA
1 AAAATTATAA
27150557 TATTTAAAAC
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
28 46 0.57
29 34 0.43
ACGTcount: A:0.57, C:0.02, G:0.14, T:0.27
Consensus pattern (28 bp):
AAAATTATAAAATATGAAAAATAGGGGT
Found at i:27150538 original size:57 final size:57
Alignment explanation
Indices: 27150420--27150573 Score: 161
Period size: 57 Copynumber: 2.7 Consensus size: 57
27150410 AAAATTTTTT
* * * * * * *
27150420 AAAAATAAGGAACAAAACTATAAAATATGAAAAATAGGGGTAAAATTATAAAATCTAA
1 AAAAATAGGGGACAAAATTATAAATTTTGAAAAATAAGGGTAAAATTATAAAATAT-A
* * *
27150478 AAAAATATGGG-CAAAATTATAAATTTTGAAAAATAAGGGTAAAATTATAATATATG
1 AAAAATAGGGGACAAAATTATAAATTTTGAAAAATAAGGGTAAAATTATAAAATATA
*
27150534 AAAAATAGGGGATAAAATTAT-AATATTT-AAAACATAAGGG
1 AAAAATAGGGGACAAAATTATAAAT-TTTGAAAA-ATAAGGG
27150574 ACACATGGCC
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
56 17 0.21
57 56 0.68
58 9 0.11
ACGTcount: A:0.57, C:0.03, G:0.14, T:0.25
Consensus pattern (57 bp):
AAAAATAGGGGACAAAATTATAAATTTTGAAAAATAAGGGTAAAATTATAAAATATA
Found at i:27150565 original size:28 final size:28
Alignment explanation
Indices: 27150418--27150573 Score: 127
Period size: 29 Copynumber: 5.5 Consensus size: 28
27150408 ATAAAATTTT
** *
27150418 TTAAAAATAAGGAACAAAACTATAAAATA
1 TTAAAAATAAGG-GTAAAATTATAAAATA
* * *
27150447 TGAAAAATAGGGGTAAAATTATAAAATC
1 TTAAAAATAAGGGTAAAATTATAAAATA
* * * *
27150475 TAAAAAAATATGGGCAAAATTAT-AAATT
1 T-TAAAAATAAGGGTAAAATTATAAAATA
*
27150503 TTGAAAAATAAGGGTAAAATTATAATATA
1 TT-AAAAATAAGGGTAAAATTATAAAATA
* * *
27150532 TGAAAAATAGGGGATAAAATTATAATAT-
1 TTAAAAATAAGGG-TAAAATTATAAAATA
27150560 TTAAAACATAAGGG
1 TTAAAA-ATAAGGG
27150574 ACACATGGCC
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
28 51 0.50
29 52 0.50
ACGTcount: A:0.56, C:0.03, G:0.14, T:0.26
Consensus pattern (28 bp):
TTAAAAATAAGGGTAAAATTATAAAATA
Found at i:27150574 original size:29 final size:29
Alignment explanation
Indices: 27150418--27150574 Score: 126
Period size: 28 Copynumber: 5.5 Consensus size: 29
27150408 ATAAAATTTT
* * *
27150418 TTAAAAATAAGGAACAAAACTATAAAATA
1 TTAAAAATAAGGGATAAAATTATAAAATA
* * *
27150447 TGAAAAAT-AGGGGTAAAATTATAAAATC
1 TTAAAAATAAGGGATAAAATTATAAAATA
* * * *
27150475 TAAAAAAATATGGG-CAAAATTAT-AAATT
1 T-TAAAAATAAGGGATAAAATTATAAAATA
*
27150503 TTGAAAAATAAGGG-TAAAATTATAATATA
1 TT-AAAAATAAGGGATAAAATTATAAAATA
* * *
27150532 TGAAAAATAGGGGATAAAATTATAATAT-
1 TTAAAAATAAGGGATAAAATTATAAAATA
27150560 TTAAAACATAAGGGA
1 TTAAAA-ATAAGGGA
27150575 CACATGGCCA
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 54 0.52
29 46 0.45
30 3 0.03
ACGTcount: A:0.57, C:0.03, G:0.14, T:0.26
Consensus pattern (29 bp):
TTAAAAATAAGGGATAAAATTATAAAATA
Found at i:27152172 original size:24 final size:24
Alignment explanation
Indices: 27152138--27152347 Score: 96
Period size: 24 Copynumber: 8.6 Consensus size: 24
27152128 TCCGGACTGT
27152138 ATAA-CGGGAAGCTCATAAGAGCC
1 ATAATCGGGAAGCTCATAAGAGCC
***
27152161 ATAATCGGGAAGCTCATGCTAGCC
1 ATAATCGGGAAGCTCATAAGAGCC
*
27152185 AATAA-CGGGTAGCTC-TGAAGAGCC
1 -ATAATCGGGAAGCTCAT-AAGAGCC
* * *
27152209 ATTAA-CAGGAAGCTC-TGGATAGCC
1 A-TAATCGGGAAGCTCAT-AAGAGCC
* *
27152233 ATATATCGGGAAGTTCA-AGCGAG-C
1 ATA-ATCGGGAAGCTCATA-AGAGCC
* **
27152257 -TAGATCGGGAATCTC-GGAGAGCC
1 ATA-ATCGGGAAGCTCATAAGAGCC
* *
27152280 ATTAATCAGGAAGCTCACAAAGAGCC
1 A-TAATCGGGAAGCTCA-TAAGAGCC
* *
27152306 TTTAATCGGGAAGCTCACGAAGAGCC
1 -ATAATCGGGAAGCTCA-TAAGAGCC
*
27152332 ATATAACGGGAAGCTC
1 ATA-ATCGGGAAGCTC
27152348 GAGAGGACTA
Statistics
Matches: 141, Mismatches: 30, Indels: 29
0.70 0.15 0.14
Matches are distributed among these distances:
22 3 0.02
23 21 0.15
24 60 0.43
25 18 0.13
26 39 0.28
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (24 bp):
ATAATCGGGAAGCTCATAAGAGCC
Found at i:27152232 original size:48 final size:49
Alignment explanation
Indices: 27152137--27152347 Score: 134
Period size: 48 Copynumber: 4.3 Consensus size: 49
27152127 ATCCGGACTG
* *
27152137 TATAACGGGAAGCTCATAAGAGCCATAATCGGGAAGCTCATGCTAGCCA
1 TATAACGGGAAGCTCATAAGAGCCATAATCAGGAAGCTCATGATAGCCA
*
27152186 -ATAACGGGTAGCTC-TGAAGAGCCATTAA-CAGGAAGCTC-TGGATAGCCA
1 TATAACGGGAAGCTCAT-AAGAGCCA-TAATCAGGAAGCTCAT-GATAGCCA
* * * * * * *
27152234 TATATCGGGAAGTTCA-AGCGAG-C-TAGATCGGGAATCTC-GGAGAGCCA
1 TATAACGGGAAGCTCATA-AGAGCCATA-ATCAGGAAGCTCATGATAGCCA
* * * * * *
27152281 T-TAATCAGGAAGCTCACAAAGAGCCTTTAATCGGGAAGCTCACGAAGAGCCA
1 TATAA-CGGGAAGCTCA-TAAGAGCC-ATAATCAGGAAGCTCATG-ATAGCCA
27152333 TATAACGGGAAGCTC
1 TATAACGGGAAGCTC
27152348 GAGAGGACTA
Statistics
Matches: 127, Mismatches: 18, Indels: 31
0.72 0.10 0.18
Matches are distributed among these distances:
46 4 0.03
47 20 0.16
48 50 0.39
49 19 0.15
50 11 0.09
51 3 0.02
52 17 0.13
53 3 0.02
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (49 bp):
TATAACGGGAAGCTCATAAGAGCCATAATCAGGAAGCTCATGATAGCCA
Found at i:27152310 original size:26 final size:26
Alignment explanation
Indices: 27152274--27152347 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
27152264 GGAATCTCGG
27152274 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
27152300 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
27152326 AGAGCCATATAA-CGGGAAGCTC
1 AGAGCCAT-TAATCAGGAAGCTC
27152348 GAGAGGACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:27154986 original size:618 final size:618
Alignment explanation
Indices: 27153765--27155176 Score: 2386
Period size: 618 Copynumber: 2.3 Consensus size: 618
27153755 TTCCAAGATT
* *
27153765 TATCAAAATTATCAAGATTTTTGGGAAAATTCGTAAAAGATTCGTATTTGAGTTGAAAGATTAAC
1 TATCAAAATTATCAAGATTTTTGGGAAATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAAC
* * * *
27153830 AAGAAAAACTATTACAGAATTTATGGGTTCTAATTGGAAA-GAAGAATGCTTACTGATCTATAAT
66 AAGAACAACTATTACAGAATTTATGGGTTCTAATTGGAAATG-AGAATACTTACCGATCTTTAAT
27153894 GAGATTTTAAAGGTTATCGATGATAAATTCAACAACCAGTGAAGAACGAATTTAATGAAGATTGA
130 GAGATTTTAAAGGTTATCGATGATAAATTCAACAACCAGTGAAGAACGAATTTAATGAAGATTGA
*
27153959 TTTTGATTTGGAGTGAGCAAAGAAATAATTTTCACAAAAAAATAATGTGAAATATGATGAAAAAG
195 TTTTGATTCGGAGTGAGCAAAGAAATAATTTTCACAAAAAAATAATGTGAAATATGATGAAAAAG
* ** * *
27154024 AAAAGGAGTTGAAAAGAAAATAAGAATTTAAAGGGAAAAGAGTAAGCATTCAAGTTGAAATAGAA
260 AAAAAGAGGAGAAAAGAAAAGAAGAATTTAAAGGGAAAAGAGGAAGCATTCAAGTTGAAATAGAA
*
27154089 AAGAAATCAAAATCCTAGAGTAATTAGGAAAAAGAGGATTAAATACTTAGGGTTTTCAAATTTCA
325 AAGAAATAAAAATCCTAGAGTAATTAGGAAAAAGAGGATTAAATACTTAGGGTTTTCAAATTTCA
* * *
27154154 AGGGGTTGCATGGAAAAATATCCAATTTTGGTCGAAATTAAAATGGAGATGGGGAGTTTGGCGTG
390 AGGGGTTGCAAGGAAAAATATCCAATTTTGGTCGAAATTAAAATGGAAATGGGGAGTTTGGCGTA
27154219 ACTTGAACCTAGTTTGCAAGGGAGAAAAAGTAAAGGCTTTAATCATTTGAGCTATTGCTCACTTT
455 ACTTGAACCTAGTTTGCAAGGGAGAAAAAGTAAAGGCTTTAATCATTTGAGCTATTGCTCACTTT
* *
27154284 TATTAATTTCCTACTCTATTTAAAACTTGTTTTTAGGTGACTCTCATTCTAGTTTGCTAAAAATT
520 TATTAATTTCCTACTCTATTTAAAACTTATTTTTAGGTGACTCTCACTCTAGTTTGCTAAAAATT
*
27154349 TAAAGCAAAGAACTGGGAAAAAAGTGAATAGAAC
585 TAAAGAAAAGAACTGGGAAAAAAGTGAATAGAAC
27154383 TATCAAAATTATCAAGATTTTTTGGG-AATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAA
1 TATCAAAATTATCAAGA-TTTTTGGGAAATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAA
*
27154447 CAAGAACAACTATTACAAAATTTATGGGTTCTAATTGGAAATGAGAATACTTACCGATCTTTAAT
65 CAAGAACAACTATTACAGAATTTATGGGTTCTAATTGGAAATGAGAATACTTACCGATCTTTAAT
* * * *
27154512 GAGATTTTGAAGGTTATCGATGATAAACTCAACAACCAGTGTAGAATGAATTTAAT-AGAGATTG
130 GAGATTTTAAAGGTTATCGATGATAAATTCAACAACCAGTGAAGAACGAATTTAATGA-AGATTG
* **
27154576 ATTTTGATTCGGAGTGAGCAAAGAAATAATTTTTACAGCAAAATAATGTGAAATATGATGAAAAA
194 ATTTTGATTCGGAGTGAGCAAAGAAATAATTTTCACAAAAAAATAATGTGAAATATGATGAAAAA
27154641 GAAAAAGAGGAGAAAAGAAAAGAAGAATTTAAAGGGAAAAGAGGGAA-CATTCAAGTTGAAATAG
259 GAAAAAGAGGAGAAAAGAAAAGAAGAATTTAAAGGGAAAAGA-GGAAGCATTCAAGTTGAAATAG
*
27154705 AAAAGAAATAAAAATCCTAGAGTAATTAGGAAAAGGAGGATTAAATACTTAGGGTTTTCAAATTT
323 AAAAGAAATAAAAATCCTAGAGTAATTAGGAAAAAGAGGATTAAATACTTAGGGTTTTCAAATTT
* *
27154770 CAAGGGGTTGCAAGGCAAGATATCCAATTTTGGTCGAAATTAAAATGGAAATGGGGAGTTTGGCG
388 CAAGGGGTTGCAAGGAAAAATATCCAATTTTGGTCGAAATTAAAATGGAAATGGGGAGTTTGGCG
*
27154835 TAACTTGAACCTGGTTTGCAAGGGAGAAAAAAGTAAAGGCTTTAATCATTTGAGCTATTGCTCAC
453 TAACTTGAACCTAGTTTGCAAGGGAG-AAAAAGTAAAGGCTTTAATCATTTGAGCTATTGCTCAC
* * *
27154900 TTTTATTAATTTTCTACTCTATTTTAAACTTATTTTTAGGTGACTTTCACTCTAGTTTGCTAAAA
517 TTTTATTAATTTCCTACTCTATTTAAAACTTATTTTTAGGTGACTCTCACTCTAGTTTGCTAAAA
27154965 ATTTAAAGAAAAGAA-TGGGAAAAAAGTGAATAGAAC
582 ATTTAAAGAAAAGAACTGGGAAAAAAGTGAATAGAAC
* *
27155001 TATCAAAATTTTCAAGATCTTTGGGAAATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAAC
1 TATCAAAATTATCAAGATTTTTGGGAAATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAAC
*
27155066 AAGAACGAA-TATTACGGAATTTATGGGTTCTAATTGGAAATGAGAATACTTACCGATCTTTAAT
66 AAGAAC-AACTATTACAGAATTTATGGGTTCTAATTGGAAATGAGAATACTTACCGATCTTTAAT
*
27155130 GAGATTTTAAAGGTTATCGATGATAAGTTCAACAACCAGTGAAGAAC
130 GAGATTTTAAAGGTTATCGATGATAAATTCAACAACCAGTGAAGAAC
27155177 ATGAGCGTGT
Statistics
Matches: 744, Mismatches: 43, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
617 8 0.01
618 610 0.82
619 126 0.17
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (618 bp):
TATCAAAATTATCAAGATTTTTGGGAAATTTCGTAAAAGATTCGTATTCGAGTTGAAAGATTAAC
AAGAACAACTATTACAGAATTTATGGGTTCTAATTGGAAATGAGAATACTTACCGATCTTTAATG
AGATTTTAAAGGTTATCGATGATAAATTCAACAACCAGTGAAGAACGAATTTAATGAAGATTGAT
TTTGATTCGGAGTGAGCAAAGAAATAATTTTCACAAAAAAATAATGTGAAATATGATGAAAAAGA
AAAAGAGGAGAAAAGAAAAGAAGAATTTAAAGGGAAAAGAGGAAGCATTCAAGTTGAAATAGAAA
AGAAATAAAAATCCTAGAGTAATTAGGAAAAAGAGGATTAAATACTTAGGGTTTTCAAATTTCAA
GGGGTTGCAAGGAAAAATATCCAATTTTGGTCGAAATTAAAATGGAAATGGGGAGTTTGGCGTAA
CTTGAACCTAGTTTGCAAGGGAGAAAAAGTAAAGGCTTTAATCATTTGAGCTATTGCTCACTTTT
ATTAATTTCCTACTCTATTTAAAACTTATTTTTAGGTGACTCTCACTCTAGTTTGCTAAAAATTT
AAAGAAAAGAACTGGGAAAAAAGTGAATAGAAC
Found at i:27156304 original size:15 final size:15
Alignment explanation
Indices: 27156286--27156314 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27156276 GGTTCTGCTC
27156286 TGTTCTGTTGTACTT
1 TGTTCTGTTGTACTT
27156301 TGTTCTGTTGTACT
1 TGTTCTGTTGTACT
27156315 ACCTTTGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.59
Consensus pattern (15 bp):
TGTTCTGTTGTACTT
Found at i:27164074 original size:22 final size:22
Alignment explanation
Indices: 27164046--27164087 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
27164036 TCATATTTTT
27164046 AAATCTCTCTCGAATTTCTCTC
1 AAATCTCTCTCGAATTTCTCTC
*
27164068 AAATCTCTCTTGAATTTCTC
1 AAATCTCTCTCGAATTTCTC
27164088 ACTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (22 bp):
AAATCTCTCTCGAATTTCTCTC
Found at i:27168674 original size:44 final size:44
Alignment explanation
Indices: 27168602--27168688 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
27168592 TTTTAATTTT
* * *
27168602 AATTCTAATTATTTTTAAATGTGCAATTATCACAACTTCTATTA
1 AATTATAATTACTTTTAAATGTACAATTATCACAACTTCTATTA
* * *
27168646 AATTATAATTACTTTTAAATGTATAATTATTACAATTTCTATT
1 AATTATAATTACTTTTAAATGTACAATTATCACAACTTCTATT
27168689 TTATTTCAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.48
Consensus pattern (44 bp):
AATTATAATTACTTTTAAATGTACAATTATCACAACTTCTATTA
Found at i:27175548 original size:31 final size:31
Alignment explanation
Indices: 27175510--27175568 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
27175500 TTACTTTTCT
27175510 CTCAAAACTTTTACTCCT-TCCCACTTTCCCC
1 CTCAAAACTTTTACTCCTCTCCC-CTTTCCCC
27175541 CTCAAAACTTTTACTCCTCTCCCCTTTC
1 CTCAAAACTTTTACTCCTCTCCCCTTTC
27175569 AACCCCCCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37
Consensus pattern (31 bp):
CTCAAAACTTTTACTCCTCTCCCCTTTCCCC
Found at i:27175740 original size:7 final size:7
Alignment explanation
Indices: 27175728--27175753 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27175718 TCCTTTCCCA
27175728 TCCCACC
1 TCCCACC
27175735 TCCCACC
1 TCCCACC
27175742 TCCCACC
1 TCCCACC
27175749 TCCCA
1 TCCCA
27175754 TCTACCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.69, G:0.00, T:0.15
Consensus pattern (7 bp):
TCCCACC
Found at i:27176956 original size:14 final size:15
Alignment explanation
Indices: 27176932--27176960 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27176922 TTTTTCTGTT
27176932 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
27176947 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
27176961 AGTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:27177155 original size:28 final size:28
Alignment explanation
Indices: 27177110--27177164 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
27177100 TTGCCATTGA
27177110 AATAATTATAAAGGTTATAATAATAAAT
1 AATAATTATAAAGGTTATAATAATAAAT
*
27177138 AATATATTATAAA-GTTATTATAATAAA
1 AATA-ATTATAAAGGTTATAATAATAAA
27177165 AAAACAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (28 bp):
AATAATTATAAAGGTTATAATAATAAAT
Found at i:27178202 original size:42 final size:41
Alignment explanation
Indices: 27178048--27178203 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 41
27178038 TATGTTATCG
* *
27178048 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATT--GATTCA
* * * * *
27178090 TGTATAAGACCATGTTTGGGACATCGGCATC-ATATTTTATTTCG
1 TG--TAAGACCACGTCTGGGACATTGGCATCGATA-TTGA-TTCA
*
27178134 TGTAAGACC-CTGTCTGGGACAATGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTGATT-CA
*
27178176 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
27178204 TGTACGAGTT
Statistics
Matches: 90, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 52 0.58
43 7 0.08
44 27 0.30
45 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTCA
Found at i:27178376 original size:17 final size:18
Alignment explanation
Indices: 27178332--27178376 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
27178322 TATGAAATTT
27178332 TGATATGAAATGTGAGTA
1 TGATATGAAATGTGAGTA
*
27178350 TGAT-TAAAATGATGA-TA
1 TGATATGAAATG-TGAGTA
27178367 T-ATATGAAAT
1 TGATATGAAAT
27178377 ATATGATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (18 bp):
TGATATGAAATGTGAGTA
Found at i:27185309 original size:23 final size:23
Alignment explanation
Indices: 27185281--27185327 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
27185271 AATTAAATAT
27185281 ATATAAT-GAAATTTCAACCTAAA
1 ATATAATAGAAATTTCAA-CTAAA
* *
27185304 ATATAATAGTAATTTTAACTAAA
1 ATATAATAGAAATTTCAACTAAA
27185327 A
1 A
27185328 CTTCATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAATAGAAATTTCAACTAAA
Found at i:27188850 original size:28 final size:26
Alignment explanation
Indices: 27188806--27188857 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
27188796 ATATTATTAA
27188806 TATAATATATATATGTTATAATAAGG
1 TATAATATATATATGTTATAATAAGG
27188832 TATAATATATTATTATGTTATAATAA
1 TATAATATA-TA-TATGTTATAATAA
27188858 ACATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 9 0.38
27 2 0.08
28 13 0.54
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (26 bp):
TATAATATATATATGTTATAATAAGG
Found at i:27190526 original size:41 final size:41
Alignment explanation
Indices: 27190481--27190570 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
27190471 CTCGGTGCCC
* * * **
27190481 AGCAGTCTTGATGCCAGTGATATGTTTCAGACTTTAAGTCT
1 AGCAGGCTTGACGCCAGTGAAACATTTCAGACTTTAAGTCT
* *
27190522 AGCAGGCTTGACGCCGGTGAAACATTTCAGACTTTATGTCT
1 AGCAGGCTTGACGCCAGTGAAACATTTCAGACTTTAAGTCT
27190563 AGCAGGCT
1 AGCAGGCT
27190571 AAGTGCCAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (41 bp):
AGCAGGCTTGACGCCAGTGAAACATTTCAGACTTTAAGTCT
Found at i:27196797 original size:9 final size:10
Alignment explanation
Indices: 27196776--27196813 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
27196766 GACTTGAAAA
*
27196776 TAAATACTAT
1 TAAATATTAT
27196786 TAAAT-TTAT
1 TAAATATTAT
*
27196795 TAAATATAAT
1 TAAATATTAT
27196805 TAAATATTA
1 TAAATATTA
27196814 ATTTTTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (10 bp):
TAAATATTAT
Found at i:27198305 original size:12 final size:12
Alignment explanation
Indices: 27198288--27198316 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
27198278 GCATGAAGTA
27198288 CACGTAGCGTGC
1 CACGTAGCGTGC
27198300 CACGTAGCGTGC
1 CACGTAGCGTGC
27198312 CACGT
1 CACGT
27198317 GTCACTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.17
Consensus pattern (12 bp):
CACGTAGCGTGC
Found at i:27202652 original size:13 final size:13
Alignment explanation
Indices: 27202634--27202664 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
27202624 AAAATACAAG
27202634 TATACAAAACGAA
1 TATACAAAACGAA
*
27202647 TATACAAAATGAA
1 TATACAAAACGAA
27202660 TATAC
1 TATAC
27202665 TACACTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.23
Consensus pattern (13 bp):
TATACAAAACGAA
Found at i:27207634 original size:60 final size:56
Alignment explanation
Indices: 27207469--27207635 Score: 169
Period size: 60 Copynumber: 2.9 Consensus size: 56
27207459 TTTTTATAAT
* * *
27207469 ATTATATATTATGATTT-TTTAATTCATATTTTAATAATAA--TATTAAGAATGTTATTAA
1 ATTATATATTAT--TTTATTAAATT-ATA-TTTAATAATAATTTATTAA-AATATGATTAA
**
27207527 ATTATATATTATTTTATTAAATTATATTTAATAATAATTGTGGTAAAATATGATTAA
1 ATTATATATTATTTTATTAAATTATATTTAATAATAATT-TATTAAAATATGATTAA
*
27207584 ATTATTTATTATTTTTTTATTAAATTATATTTAATAATAATCTTATTAAAAT
1 ATTA--TA-TATTATTTTATTAAATTATATTTAATAATAAT-TTATTAAAAT
27207636 TTAAAAACAA
Statistics
Matches: 93, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
55 11 0.12
56 6 0.06
57 19 0.20
58 16 0.17
59 2 0.02
60 38 0.41
61 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (56 bp):
ATTATATATTATTTTATTAAATTATATTTAATAATAATTTATTAAAATATGATTAA
Found at i:27216487 original size:14 final size:14
Alignment explanation
Indices: 27216468--27216497 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
27216458 TATTCTGTTA
27216468 GTTAAGGTTATGTG
1 GTTAAGGTTATGTG
27216482 GTTAAGGTTATGTG
1 GTTAAGGTTATGTG
27216496 GT
1 GT
27216498 GGAATCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (14 bp):
GTTAAGGTTATGTG
Found at i:27218248 original size:24 final size:25
Alignment explanation
Indices: 27218199--27218259 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 25
27218189 AGGATATGAA
*
27218199 TATGTATATGAAATTTGCATCTGAT
1 TATGTATATGAAATTTACATCTGAT
27218224 TATGTATATGAAA-TTACATCTGAT
1 TATGTATATGAAATTTACATCTGAT
*
27218248 TATGTATCTGAA
1 TATGTATATGAA
27218260 TTGCAATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 21 0.62
25 13 0.38
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (25 bp):
TATGTATATGAAATTTACATCTGAT
Found at i:27220667 original size:3 final size:3
Alignment explanation
Indices: 27220659--27220684 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
27220649 TTCCCTATTT
27220659 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
27220685 TTCCTAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:27223966 original size:42 final size:42
Alignment explanation
Indices: 27223919--27224015 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
27223909 AACAAAATAT
* *
27223919 TATCTAGATAAATATTAAATTTAATTTAATATCTCATATTAA
1 TATCTAAATAAATATTAAATTTAATGTAATATCTCATATTAA
* * *
27223961 TATCTAAATAAATATTTAATTTAATGTAATATTTGATATTAA
1 TATCTAAATAAATATTAAATTTAATGTAATATCTCATATTAA
*
27224003 TAT-TAAATTAATA
1 TATCTAAATAAATA
27224016 AAGCACTATC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
41 9 0.18
42 40 0.82
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (42 bp):
TATCTAAATAAATATTAAATTTAATGTAATATCTCATATTAA
Found at i:27224075 original size:103 final size:103
Alignment explanation
Indices: 27223895--27224096 Score: 289
Period size: 103 Copynumber: 2.0 Consensus size: 103
27223885 AATTAATCAC
* * * * *
27223895 ATTAATATTAAATTAACAAAATATTATCTAGATAAATATTAAATTTAATTTAATATCTCATATTA
1 ATTAATATTAAATTAACAAAACACTATCTAAATAAATATTAAATTAAATTAAATATCTCATATTA
27223960 ATATCTAAATAAATATTT-AATTTAATGTAATATTTGAT
66 ATATCTAAATAAAT-TTTAAATTTAATGTAATATTTGAT
* * *
27223998 ATTAATATTAAATTAATAAAGCACTATCTAAATAAGTATTAAATTAAATTAAATATCTCATATTA
1 ATTAATATTAAATTAACAAAACACTATCTAAATAAATATTAAATTAAATTAAATATCTCATATTA
* * *
27224063 GTATCTAGATAAATTTTAAATTTAATTTAATATT
66 ATATCTAAATAAATTTTAAATTTAATGTAATATT
27224097 AAATTCATTA
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
102 3 0.03
103 84 0.97
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (103 bp):
ATTAATATTAAATTAACAAAACACTATCTAAATAAATATTAAATTAAATTAAATATCTCATATTA
ATATCTAAATAAATTTTAAATTTAATGTAATATTTGAT
Found at i:27228445 original size:3 final size:3
Alignment explanation
Indices: 27228437--27228488 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
27228427 TAATTGCATT
27228437 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
27228485 ATA A
1 ATA A
27228489 AGGTACTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:27230371 original size:20 final size:21
Alignment explanation
Indices: 27230343--27230393 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
27230333 TACATACTAT
* *
27230343 CACTATTCATG-ATTTGACTC
1 CACTATTCATGAACTTGACCC
*
27230363 CACTGTTCATGAACTTGACCC
1 CACTATTCATGAACTTGACCC
27230384 CACTATTCAT
1 CACTATTCAT
27230394 AGGATTGACA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.35
Consensus pattern (21 bp):
CACTATTCATGAACTTGACCC
Found at i:27230401 original size:21 final size:21
Alignment explanation
Indices: 27230343--27230402 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
27230333 TACATACTAT
* *
27230343 CACTATTCAT-GATTTGACTC
1 CACTATTCATGGACTTGACCC
* *
27230363 CACTGTTCATGAACTTGACCC
1 CACTATTCATGGACTTGACCC
27230384 CACTATTCATAGGA-TTGAC
1 CACTATTCAT-GGACTTGAC
27230403 ATTCTGAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 9 0.28
21 21 0.66
22 2 0.06
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (21 bp):
CACTATTCATGGACTTGACCC
Found at i:27232867 original size:13 final size:14
Alignment explanation
Indices: 27232849--27232882 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
27232839 CCTGAGGTTG
27232849 AAAAAATTT-GATT
1 AAAAAATTTAGATT
27232862 AAAAAATTTGAGATT
1 AAAAAATTT-AGATT
27232877 AAAAAA
1 AAAAAA
27232883 CAATCTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.47
15 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (14 bp):
AAAAAATTTAGATT
Found at i:27235434 original size:6 final size:6
Alignment explanation
Indices: 27235423--27235452 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
27235413 CAAAAGCATT
27235423 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC
1 CTTTTC CTTTTC CTTTTC CTTTTC CTTTTC
27235453 ATAGATGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
CTTTTC
Found at i:27238697 original size:2 final size:2
Alignment explanation
Indices: 27238690--27238717 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
27238680 TAAATGCTTT
27238690 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27238718 ATTGAGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27239970 original size:5 final size:5
Alignment explanation
Indices: 27239960--27240727 Score: 1527
Period size: 5 Copynumber: 153.6 Consensus size: 5
27239950 CCTAATTGGG
27239960 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240010 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240060 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240110 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240160 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240210 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240260 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240310 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240360 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240410 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240460 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240510 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240560 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240610 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
27240660 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
*
27240710 TATTA TGTTA TATTA TAT
1 TATTA TATTA TATTA TAT
27240728 ACTTGGCAGG
Statistics
Matches: 761, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 761 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:27247383 original size:7 final size:7
Alignment explanation
Indices: 27247373--27247397 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
27247363 TAAAATAAAA
27247373 AATTATT
1 AATTATT
27247380 AATTATT
1 AATTATT
27247387 AATTATT
1 AATTATT
27247394 AATT
1 AATT
27247398 GTTTTAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTATT
Found at i:27248981 original size:58 final size:58
Alignment explanation
Indices: 27248888--27249005 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
27248878 GGCCACCGCA
27248888 TGCGGTGGCGCCGGTGCCAGATATCGGCGGCCGGCGCGGTGGCCGATGACCGGACCTT
1 TGCGGTGGCGCCGGTGCCAGATATCGGCGGCCGGCGCGGTGGCCGATGACCGGACCTT
*
27248946 TGCGGTGGCGCCGGTGCCAGATATCGGCGGTCGGCGCGGTGGCCGATGACCGGACCTT
1 TGCGGTGGCGCCGGTGCCAGATATCGGCGGCCGGCGCGGTGGCCGATGACCGGACCTT
27249004 TG
1 TG
27249006 GCCGGACGAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.10, C:0.30, G:0.43, T:0.17
Consensus pattern (58 bp):
TGCGGTGGCGCCGGTGCCAGATATCGGCGGCCGGCGCGGTGGCCGATGACCGGACCTT
Found at i:27260547 original size:29 final size:29
Alignment explanation
Indices: 27260509--27260570 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
27260499 AATCAAAGTG
27260509 AAAACCCGCAAAGGGCGCTCGGATTTCCA
1 AAAACCCGCAAAGGGCGCTCGGATTTCCA
27260538 AAAACCCGCAAAGGGCGCTCGGATTTCCA
1 AAAACCCGCAAAGGGCGCTCGGATTTCCA
27260567 AAAA
1 AAAA
27260571 AAAAAAGGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.35, C:0.29, G:0.23, T:0.13
Consensus pattern (29 bp):
AAAACCCGCAAAGGGCGCTCGGATTTCCA
Found at i:27261728 original size:44 final size:44
Alignment explanation
Indices: 27261680--27262480 Score: 120
Period size: 44 Copynumber: 18.2 Consensus size: 44
27261670 GTAACCAGTG
*
27261680 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGGAGAAGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
** * *
27261724 ATCTTATCTTTCTAAG-A-TAGTGGGAAGCAGATTTG-AGCCA-CCAA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG-AAGGCAA
** * * * ** * * ** * *
27261768 GCCTTGTCTCACTGAGCAGCCGTGGAGAAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * * *
27261812 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * *
27261856 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AGCCA--CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG-AAGGCAA
* * * * * ** * *
27261899 AGCTTTGTCTCCCTGAA-CAGTAGTGAAGAAGGTTGAAGATTGTAG
1 ATC-TTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * * * * * *
27261944 ATCTTATCTCCCTAAACAGTATTAGAGTAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* *
27261988 ATCTTATCTTCCC-AAG-A-TAGTGGGAAGCAGATTTG-AGCCA-CCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG-AAGGCAA
** * * * * ** * *
27262032 GCCTTGTCTCCCTGAGCAGCAGTGGAG-AAAGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TTGAAGAAGGCAA
* * * * *
27262076 ATCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * * *
27262120 ATCTTATCTTTCC-AAG-A-TAGTGGGAAACAGATTTG-AGCCA-CCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG-AAGGCAA
** * ** * * *
27262164 GCCTTGTCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * * *
27262208 ATCTAATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AGCCA-CCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG-AAGGCAA
** * * * * * ** * *
27262252 GCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * *
27262296 ATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
* * * *
27262340 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA--CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG-AAGGCAA
* * ** * * * * * *
27262383 AGCTTTGTCTCCCTGGGCAGCAGAGGAGAAGGTTGAAG-AGTGTAG
1 ATC-TTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAG-GCAA
* * * *
27262428 ATCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
27262472 ATCTTATCT
1 ATCTTATCT
27262481 TTCCAATATA
Statistics
Matches: 502, Mismatches: 190, Indels: 130
0.61 0.23 0.16
Matches are distributed among these distances:
42 23 0.05
43 57 0.11
44 352 0.70
45 52 0.10
46 18 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAAGGCAA
Found at i:27261929 original size:132 final size:132
Alignment explanation
Indices: 27261679--27262176 Score: 816
Period size: 132 Copynumber: 3.8 Consensus size: 132
27261669 GGTAACCAGT
* * * * * *
27261679 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGGAGAAGGCAAATCTTATCTTTCTAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
* * *
27261744 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCACTGAGCAGCCGTGGAGAAGGTTGAAGATTG
66 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGGAGAAGGTTGAAGATTG
27261809 TA
131 TA
27261811 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
* * *
27261876 TGGGAAGCAGATTTGAGCCACCAAGCTTTGTCTCCCTGAACAGTAGTGAAGAAGGTTGAAGATTG
66 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGGAGAAGGTTGAAGATTG
27261941 TA
131 TA
* * * *
27261943 GATCTTATCTCCCTAAACAGTATTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
* *
27262008 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTG
66 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGGAGAAGGTTGAAGATTG
27262073 TA
131 TA
*
27262075 GATCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
*
27262140 TGGGAAACAGATTTGAGCCACCAAGCCTTGTCTCCCT
66 TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCT
27262177 AAGCAGTAGT
Statistics
Matches: 339, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 339 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAG
TGGGAAGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGGAGAAGGTTGAAGATTG
TA
Found at i:27262231 original size:220 final size:220
Alignment explanation
Indices: 27261950--27262396 Score: 768
Period size: 220 Copynumber: 2.0 Consensus size: 220
27261940 GTAGATCTTA
* * * *
27261950 TCTCCCTAAACAGTATTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTGGGAAG
1 TCTCCCTAAACAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTCCCAAGATAGTGGGAAG
27262015 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTGTAGATCT
66 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTGTAGATCT
* * *
27262080 TATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
131 TATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
*
27262145 AACAGATTTGAGCCACCAAGCCTTG
196 AACAGATTTAAGCCACCAAGCCTTG
* *
27262170 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAACAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTCCCAAGATAGTGGGAAG
*
27262235 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTGTAGATCT
*
27262300 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
131 TATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
* *
27262365 AGCAGATTTAAGCCACCAAGCTTTG
196 AACAGATTTAAGCCACCAAGCCTTG
27262390 TCTCCCT
1 TCTCCCT
27262397 GGGCAGCAGA
Statistics
Matches: 213, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
220 213 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (220 bp):
TCTCCCTAAACAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTCCCAAGATAGTGGGAAG
CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTGTAGATCT
TATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
AACAGATTTAAGCCACCAAGCCTTG
Found at i:27262289 original size:88 final size:88
Alignment explanation
Indices: 27262082--27262281 Score: 328
Period size: 88 Copynumber: 2.3 Consensus size: 88
27262072 GTAGATCTTA
* *
27262082 TCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAA
1 TCTCCCTGAGCAGTAGTGGAGAAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAA
27262147 CAGATTTGAGCCACCAAGCCTTG
66 CAGATTTGAGCCACCAAGCCTTG
* ** * *
27262170 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTGAGCAGTAGTGGAGAAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAA
27262235 CAGATTTGAGCCACCAAGCCTTG
66 CAGATTTGAGCCACCAAGCCTTG
*
27262258 TCTCCCTGAGCAGCAGTGGAGAAG
1 TCTCCCTGAGCAGTAGTGGAGAAG
27262282 GTTGAAGATT
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 101 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (88 bp):
TCTCCCTGAGCAGTAGTGGAGAAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAA
CAGATTTGAGCCACCAAGCCTTG
Found at i:27262306 original size:132 final size:132
Alignment explanation
Indices: 27262170--27262510 Score: 547
Period size: 132 Copynumber: 2.6 Consensus size: 132
27262160 CCAAGCCTTG
** *
27262170 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * *
27262235 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAGGTTGAAGAGTGTAGATCT
27262300 TA
131 TA
* *
27262302 TCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* *
27262367 CAGATTTAAGCCACCAAGCTTTGTCTCCCTGGGCAGCAGAGGAGAAGGTTGAAGAGTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAGGTTGAAGAGTGTAGATCT
27262432 TA
131 TA
* * * *
27262434 TTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAATATAGTGGGGAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
*
27262499 CAGATTAAAGCC
66 CAGATTTAAGCC
27262511 GATAATCCTA
Statistics
Matches: 192, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 192 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (132 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAGGTTGAAGAGTGTAGATCT
TA
Found at i:27262335 original size:352 final size:352
Alignment explanation
Indices: 27261818--27262504 Score: 1122
Period size: 352 Copynumber: 2.0 Consensus size: 352
27261808 GTAGATCTTA
** * *
27261818 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
* *
27261883 CAGATTTGAGCCACCAAGCTTTGTCTCCCTGAACAGTAGTGAAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGAAGAAGGTTGAAGATTGTAGATCT
** *
27261948 TATCTCCCTAAACAGTATTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTGGGA
131 TATCTCCCTAAACAGTAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTGGGA
* * *
27262013 AGCAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAAGTTGAAGATTGTAGAT
196 AGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAAGTTGAAGAGTGTAGAT
* *
27262078 CTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGG
261 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGG
27262143 GAAACAGATTTGAGCCACCAAGCCTTG
326 GAAACAGATTTGAGCCACCAAGCCTTG
27262170 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
* *
27262235 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGAAGAAGGTTGAAGATTGTAGATCT
* * * *
27262300 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGA
131 TATCTCCCTAAACAGTAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTGGGA
* * *
27262365 AGCAGATTTAAGCCACCAAGCTTTGTCTCCCTGGGCAGCAGAGGAGAAGGTTGAAGAGTGTAGAT
196 AGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAAGTTGAAGAGTGTAGAT
* * *
27262430 CTTATTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAATATAGTGG
261 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGG
* *
27262495 GGAGCAGATT
326 GAAACAGATT
27262505 AAAGCCGATA
Statistics
Matches: 307, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
352 307 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (352 bp):
TCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACGGCGAATCTAATCTTTCCAAGATAGTGGGAAG
CAGATTTGAGCCACCAAGCCTTGTCTCCCTGAACAGCAGTGAAGAAGGTTGAAGATTGTAGATCT
TATCTCCCTAAACAGTAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTGGGA
AGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGAGGAGAAAGTTGAAGAGTGTAGAT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGG
GAAACAGATTTGAGCCACCAAGCCTTG
Found at i:27277883 original size:7 final size:7
Alignment explanation
Indices: 27277871--27277899 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
27277861 GAGAGATGAA
27277871 AGGGATG
1 AGGGATG
27277878 AGGGATG
1 AGGGATG
27277885 AGGGATG
1 AGGGATG
27277892 AGGGATG
1 AGGGATG
27277899 A
1 A
27277900 TTGAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.55, T:0.14
Consensus pattern (7 bp):
AGGGATG
Found at i:27299556 original size:12 final size:12
Alignment explanation
Indices: 27299543--27299579 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
27299533 AATGATAGAT
27299543 AAATAAATAAATA
1 AAATAAA-AAATA
*
27299556 AAATAAAAGATA
1 AAATAAAAAATA
27299568 AAATAAAAAATA
1 AAATAAAAAATA
27299580 CTATGCTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:27299557 original size:24 final size:24
Alignment explanation
Indices: 27299530--27299579 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
27299520 ATGATGATAT
* *
27299530 TAAAATGATAGAT-AAATAAATAAA
1 TAAAATAAAAGATAAAATAAA-AAA
27299554 TAAAATAAAAGATAAAATAAAAAA
1 TAAAATAAAAGATAAAATAAAAAA
27299578 TA
1 TA
27299580 CTATGCTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (24 bp):
TAAAATAAAAGATAAAATAAAAAA
Found at i:27306434 original size:20 final size:20
Alignment explanation
Indices: 27306382--27306453 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
27306372 GACAGAATAC
27306382 GCCACAAAGGCTAACATAAT
1 GCCACAAAGGCTAACATAAT
**
27306402 ATCACAAAAGGCTAACATAAT
1 GCCAC-AAAGGCTAACATAAT
* * *
27306423 GCCACCAAGGCTAGCAGAAT
1 GCCACAAAGGCTAACATAAT
*
27306443 GCTACAAAGGC
1 GCCACAAAGGC
27306454 CCAATTAGAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 24 0.57
21 18 0.43
ACGTcount: A:0.43, C:0.25, G:0.18, T:0.14
Consensus pattern (20 bp):
GCCACAAAGGCTAACATAAT
Found at i:27306476 original size:24 final size:24
Alignment explanation
Indices: 27306446--27306501 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
27306436 GCAGAATGCT
*
27306446 ACAAAGGCCCAATTAGAATACACC
1 ACAAAGGCCAAATTAGAATACACC
* *
27306470 ATAAAGGCCAAATTAGAATACGCC
1 ACAAAGGCCAAATTAGAATACACC
27306494 ACAAAGGC
1 ACAAAGGC
27306502 TAACAGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.25, G:0.16, T:0.12
Consensus pattern (24 bp):
ACAAAGGCCAAATTAGAATACACC
Found at i:27311383 original size:395 final size:395
Alignment explanation
Indices: 27310653--27311444 Score: 1584
Period size: 395 Copynumber: 2.0 Consensus size: 395
27310643 GAGTACAAAA
27310653 GATGGAGATAAAAACTAAACCCCGAAAACCCGAAAACAAAGAACTCTCAAAACGTAAACACAAAA
1 GATGGAGATAAAAACTAAACCCCGAAAACCCGAAAACAAAGAACTCTCAAAACGTAAACACAAAA
27310718 TTCTCTAAATGTGTTATGAGTTCTAATCTCTAAATTGGTGTTATTACTAAGGTTGTAAAAGAGCC
66 TTCTCTAAATGTGTTATGAGTTCTAATCTCTAAATTGGTGTTATTACTAAGGTTGTAAAAGAGCC
27310783 TATTTATAGGATAAATTTATATGTCAAATAATAATAAAATAATCTAAAATAATCAGTGTTTGACT
131 TATTTATAGGATAAATTTATATGTCAAATAATAATAAAATAATCTAAAATAATCAGTGTTTGACT
27310848 GAAACAAATAAACAGAGTTTAACTAAAATATTATTTCTCAAATTTGATTGAAAATAGGAGTCATA
196 GAAACAAATAAACAGAGTTTAACTAAAATATTATTTCTCAAATTTGATTGAAAATAGGAGTCATA
27310913 CTTAACAAATCTCCACATTGACTCATATTTCCACAACGCCATCTTTGCTAAAGCCCGCCACGAGC
261 CTTAACAAATCTCCACATTGACTCATATTTCCACAACGCCATCTTTGCTAAAGCCCGCCACGAGC
27310978 CTATCTTGAACTATGCAGGGAATTAACTAAGTCGAATCTGTGCTTAGAAGCTGGAAGACTTCTAT
326 CTATCTTGAACTATGCAGGGAATTAACTAAGTCGAATCTGTGCTTAGAAGCTGGAAGACTTCTAT
27311043 CCCTT
391 CCCTT
27311048 GATGGAGATAAAAACTAAACCCCGAAAACCCGAAAACAAAGAACTCTCAAAACGTAAACACAAAA
1 GATGGAGATAAAAACTAAACCCCGAAAACCCGAAAACAAAGAACTCTCAAAACGTAAACACAAAA
27311113 TTCTCTAAATGTGTTATGAGTTCTAATCTCTAAATTGGTGTTATTACTAAGGTTGTAAAAGAGCC
66 TTCTCTAAATGTGTTATGAGTTCTAATCTCTAAATTGGTGTTATTACTAAGGTTGTAAAAGAGCC
27311178 TATTTATAGGATAAATTTATATGTCAAATAATAATAAAATAATCTAAAATAATCAGTGTTTGACT
131 TATTTATAGGATAAATTTATATGTCAAATAATAATAAAATAATCTAAAATAATCAGTGTTTGACT
27311243 GAAACAAATAAACAGAGTTTAACTAAAATATTATTTCTCAAATTTGATTGAAAATAGGAGTCATA
196 GAAACAAATAAACAGAGTTTAACTAAAATATTATTTCTCAAATTTGATTGAAAATAGGAGTCATA
27311308 CTTAACAAATCTCCACATTGACTCATATTTCCACAACGCCATCTTTGCTAAAGCCCGCCACGAGC
261 CTTAACAAATCTCCACATTGACTCATATTTCCACAACGCCATCTTTGCTAAAGCCCGCCACGAGC
27311373 CTATCTTGAACTATGCAGGGAATTAACTAAGTCGAATCTGTGCTTAGAAGCTGGAAGACTTCTAT
326 CTATCTTGAACTATGCAGGGAATTAACTAAGTCGAATCTGTGCTTAGAAGCTGGAAGACTTCTAT
27311438 CCCTT
391 CCCTT
27311443 GA
1 GA
27311445 CTTGTACACT
Statistics
Matches: 397, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
395 397 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (395 bp):
GATGGAGATAAAAACTAAACCCCGAAAACCCGAAAACAAAGAACTCTCAAAACGTAAACACAAAA
TTCTCTAAATGTGTTATGAGTTCTAATCTCTAAATTGGTGTTATTACTAAGGTTGTAAAAGAGCC
TATTTATAGGATAAATTTATATGTCAAATAATAATAAAATAATCTAAAATAATCAGTGTTTGACT
GAAACAAATAAACAGAGTTTAACTAAAATATTATTTCTCAAATTTGATTGAAAATAGGAGTCATA
CTTAACAAATCTCCACATTGACTCATATTTCCACAACGCCATCTTTGCTAAAGCCCGCCACGAGC
CTATCTTGAACTATGCAGGGAATTAACTAAGTCGAATCTGTGCTTAGAAGCTGGAAGACTTCTAT
CCCTT
Found at i:27313492 original size:90 final size:88
Alignment explanation
Indices: 27313281--27313532 Score: 249
Period size: 89 Copynumber: 2.9 Consensus size: 88
27313271 TTTTAATTTG
* * * * * * * *
27313281 TTTTTAAAAAAAGCAACTAAGCCCCTGCTTCTTTTTTCACTTAATAAGATACTTAAACTTTTAAA
1 TTTTTAAAAAAAGCAATTAAGACCCTGATTTTTTTTTCACTCAATTAGGTACTTGAACTTTT-AA
** * *
27313346 ATATATCAAAAAGACCTTCAAACT
65 ATGCATCAAAAAAACCCTCAAACT
* ** * * *
27313370 TTTTCAAAAAAAGCAATT-AGACTATTGTTTTTTTTTTGCACGCAATTAGGTATTTGAACTTTTA
1 TTTTTAAAAAAAGCAATTAAGAC-CCTGATTTTTTTTT-CACTCAATTAGGTACTTGAACTTTTA
*
27313434 AATGCATTAAAAAAACCCTCAAACT
64 AATGCATCAAAAAAACCCTCAAACT
* * *
27313459 TTTTTAAAGAAAAGCAATTAAGTCCCTGA--TTTTTTTCACTCAATTAGGTACTTGAACTGTAAA
1 TTTTTAAA-AAAAGCAATTAAGACCCTGATTTTTTTTTCACTCAATTAGGTACTTGAACTTTTAA
27313522 ATGCATCAAAA
65 ATGCATCAAAA
27313533 CGGTTCTTTA
Statistics
Matches: 131, Mismatches: 28, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
87 33 0.25
88 10 0.08
89 54 0.41
90 31 0.24
91 3 0.02
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (88 bp):
TTTTTAAAAAAAGCAATTAAGACCCTGATTTTTTTTTCACTCAATTAGGTACTTGAACTTTTAAA
TGCATCAAAAAAACCCTCAAACT
Found at i:27313674 original size:10 final size:9
Alignment explanation
Indices: 27313659--27313778 Score: 82
Period size: 10 Copynumber: 12.6 Consensus size: 9
27313649 AAAAAAATCA
*
27313659 ATAAAATTT
1 ATAAAAATT
27313668 ATAAAAATT
1 ATAAAAATT
**
27313677 ATTAAATTTT
1 A-TAAAAATT
*
27313687 AATAAAAA-A
1 -ATAAAAATT
27313696 ATTAAAAATT
1 A-TAAAAATT
27313706 ATAAAAAATT
1 AT-AAAAATT
27313716 ATTAAAAATT
1 A-TAAAAATT
27313726 ATAAAAA-T
1 ATAAAAATT
*
27313734 AGAAAAATTTT
1 ATAAAAA--TT
27313745 ATAAAATATT
1 ATAAAA-ATT
* *
27313755 GTAAAATTTT
1 ATAAAA-ATT
27313765 ATAAAAATT
1 ATAAAAATT
27313774 ATAAA
1 ATAAA
27313779 TCCATCAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 20
0.73 0.11 0.17
Matches are distributed among these distances:
8 8 0.09
9 29 0.33
10 42 0.48
11 8 0.09
12 1 0.01
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (9 bp):
ATAAAAATT
Found at i:27313691 original size:20 final size:19
Alignment explanation
Indices: 27313660--27313779 Score: 93
Period size: 19 Copynumber: 6.3 Consensus size: 19
27313650 AAAAAATCAA
*
27313660 TAAAATTTATAAAAATTAT
1 TAAATTTTATAAAAATTAT
*
27313679 TAAATTTTAATAAAAA-AAT
1 TAAATTTT-ATAAAAATTAT
**
27313698 TAAAAATTATAAAAAATTAT
1 TAAATTTTAT-AAAAATTAT
** *
27313718 TAAAAATTATAAAAA-TAGA
1 TAAATTTTATAAAAATTA-T
* *
27313737 AAAATTTTATAAAATATTGT
1 TAAATTTTATAAAA-ATTAT
*
27313757 AAAATTTTATAAAAATTA-
1 TAAATTTTATAAAAATTAT
27313775 TAAAT
1 TAAAT
27313780 CCATCAAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.10
19 39 0.48
20 34 0.41
21 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAATTTTATAAAAATTAT
Found at i:27313693 original size:29 final size:28
Alignment explanation
Indices: 27313650--27313751 Score: 80
Period size: 29 Copynumber: 3.6 Consensus size: 28
27313640 AATTTTAAAA
*
27313650 AAAAAATCAATAAAATTTATAAAAATTAT
1 AAAAAATTAATAAAA-TTATAAAAATTAT
* ** **
27313679 TAAATTTTAATAAAAAAATTAAAAATTAT
1 AAAAAATTAATAAAATTA-TAAAAATTAT
* *
27313708 AAAAAATTATTAAAAATTATAAAAA-TAG
1 AAAAAATTAAT-AAAATTATAAAAATTAT
* *
27313736 AAAAATTTTATAAAAT
1 AAAAAATTAATAAAAT
27313752 ATTGTAAAAT
Statistics
Matches: 55, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
27 5 0.09
28 11 0.20
29 34 0.62
30 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (28 bp):
AAAAAATTAATAAAATTATAAAAATTAT
Found at i:27313705 original size:39 final size:38
Alignment explanation
Indices: 27313639--27313771 Score: 124
Period size: 39 Copynumber: 3.4 Consensus size: 38
27313629 CATGTGGCAA
*
27313639 AAATTTTAAAAAAAAAATCAATAAAATTTATAAAAATTATT
1 AAATTTT-ATAAAAAAAT-AA-AAAATTTATAAAAATTATT
*
27313680 AAATTTTAATAAAAAAATTAAAAA-TTATAAAAAATTATT
1 AAATTTT-ATAAAAAAATAAAAAATTTAT-AAAAATTATT
** * * * * *
27313719 AAAAATTATAAAAATAGAAAAATTTTATAAAATATTGTA
1 AAATTTTATAAAAAAATAAAAAATTTATAAAA-ATTATT
27313758 AAATTTTATAAAAA
1 AAATTTTATAAAAA
27313772 TTATAAATCC
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
38 20 0.26
39 39 0.51
40 1 0.01
41 17 0.22
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.35
Consensus pattern (38 bp):
AAATTTTATAAAAAAATAAAAAATTTATAAAAATTATT
Found at i:27313739 original size:27 final size:25
Alignment explanation
Indices: 27313692--27313751 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 25
27313682 ATTTTAATAA
27313692 AAAAATTAAAAATTATAAAAAATTATT
1 AAAAATTAAAAA-TATAAAAAATT-TT
27313719 AAAAATTATAAAA-ATAGAAAAATTTT
1 AAAAATTA-AAAATATA-AAAAATTTT
27313745 ATAAAAT
1 A-AAAAT
27313752 ATTGTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
26 6 0.20
27 20 0.67
28 4 0.13
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (25 bp):
AAAAATTAAAAATATAAAAAATTTT
Found at i:27314139 original size:29 final size:25
Alignment explanation
Indices: 27314106--27314174 Score: 68
Period size: 29 Copynumber: 2.6 Consensus size: 25
27314096 ATTTTTTCTA
27314106 ATTTTTAATATTTTTATTAAAATTTAATT
1 ATTTTTAATATTTTTATT--AATTT--TT
*
27314135 ATTTTT-ATAACTTTTATTAATTTTT
1 ATTTTTAAT-ATTTTTATTAATTTTT
*
27314160 ATTTTTATTATTTTT
1 ATTTTTAATATTTTT
27314175 TGTCACGTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
25 13 0.37
26 1 0.03
27 5 0.14
28 2 0.06
29 14 0.40
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.68
Consensus pattern (25 bp):
ATTTTTAATATTTTTATTAATTTTT
Found at i:27314150 original size:19 final size:19
Alignment explanation
Indices: 27314098--27314161 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
27314088 TTTTTATAAT
* *
27314098 TTTTTCTAATTTTTAA-TA
1 TTTTTATAAATTTTAATTA
*
27314116 TTTTTATTAAAATTTAATTA
1 TTTTTA-TAAATTTTAATTA
*
27314136 TTTTTATAACTTTT-ATTAA
1 TTTTTATAAATTTTAATT-A
27314155 TTTTTAT
1 TTTTTAT
27314162 TTTTATTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.21
19 22 0.58
20 8 0.21
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTATAAATTTTAATTA
Found at i:27314162 original size:10 final size:10
Alignment explanation
Indices: 27314087--27314162 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
27314077 TAAATTTACG
27314087 ATTTTTA-TA
1 ATTTTTATTA
27314096 ATTTTT-TCTA
1 ATTTTTAT-TA
*
27314106 ATTTTTAAT-
1 ATTTTTATTA
27314115 ATTTTTATTAA
1 ATTTTTATT-A
* *
27314126 AATTTAATT-
1 ATTTTTATTA
27314135 ATTTTTA-TA
1 ATTTTTATTA
*
27314144 ACTTTTATTA
1 ATTTTTATTA
27314154 ATTTTTATT
1 ATTTTTATT
27314163 TTTATTATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
8 1 0.02
9 25 0.48
10 19 0.37
11 7 0.13
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTTATTA
Done.