Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold9878.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4169
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28


Found at i:416 original size:114 final size:114

Alignment explanation


    Indices: 216--442  Score: 427
    Period size: 114  Copynumber: 2.0  Consensus size: 114

        206 TAGGTAAAGT

                                                                            *
        216 CTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGTAG
          1 CTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGTAA

                                                             
        281 GAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCCTGATGAATA
         66 GAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCCTGATGAATA

                                                                             
        330 CTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGTAA
          1 CTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGTAA

                                              *  *          
        395 GAATGGAATTAAATAGTGAATAAATTATGTAAACGAATCCTGATGAAT
         66 GAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCCTGATGAAT

        443 CTATTTTCAT


Statistics
Matches: 110,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 114  110  1.00

ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25


Consensus pattern (114 bp):   
CTACCTTAAAGGCAGATGCTGACAGCAGCAGTGATGTAGATTTGGAAAATCACTAAAAATAGTAA
GAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCCTGATGAATA
Done.