genome.fa.s627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold3555.1
Parameters: 2 7 7 80 10 50 1000
Length:  119814

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5444--5519	27	2.9	27	80	7	95	28	22	15	32	1.95
13022--13058	18	2.1	18	90	5	58	13	29	37	18	1.90
33381--33607	40	5.7	40	92	2	384	30	20	27	21	1.98
35274--35368	29	3.3	28	73	7	84	31	29	14	24	1.95
41624--41694	27	2.6	27	71	4	72	38	25	8	28	1.85
42365--42416	27	2.0	26	84	3	68	17	26	21	34	1.95
47892--47964	27	2.7	27	70	4	76	36	27	8	27	1.85
48615--48991	67	5.6	67	98	0	718	19	29	21	30	1.97
51076--51170	29	3.3	29	85	1	120	30	29	13	26	1.94
56854--56972	27	4.4	27	82	4	132	36	20	20	23	1.95
56853--56958	54	2.0	54	86	0	149	35	20	18	24	1.95
57681--57742	33	1.9	32	83	9	81	24	20	19	35	1.96
58971--59013	20	2.2	20	87	8	61	37	18	4	39	1.72
62014--62103	32	2.8	31	85	6	117	30	25	16	27	1.97
63490--63523	17	2.1	17	88	5	52	47	26	11	14	1.79
64837--64933	30	3.2	31	73	5	101	27	28	15	27	1.96
66610--66649	12	3.2	12	85	3	53	75	7	5	12	1.18
66609--66649	13	3.2	13	89	6	66	75	7	4	12	1.16
66634--66672	17	2.3	17	82	8	53	76	5	7	10	1.13
67586--67642	11	5.5	10	73	22	55	77	1	17	3	1.00
67586--67642	5	11.0	5	77	17	55	77	1	17	3	1.00
67586--67642	16	3.7	14	80	17	60	77	1	17	3	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67724--67804	30	2.7	31	80	5	103	64	1	22	12	1.34
69918--70014	30	3.2	30	69	13	83	26	29	15	27	1.96
80169--80217	24	2.0	25	92	4	82	14	40	4	40	1.64
82307--82451	47	3.1	47	88	2	213	32	11	29	26	1.92
82334--82409	23	3.2	25	62	24	63	28	13	34	23	1.92
82410--82556	50	3.0	50	93	3	244	37	8	24	29	1.84
82706--82850	37	3.9	37	93	0	236	24	19	31	25	1.98
84121--84551	40	10.8	40	93	1	686	24	21	28	25	1.99
88046--88323	48	5.8	48	96	0	493	33	6	27	32	1.83
88473--88618	37	3.9	37	89	0	211	21	17	32	28	1.96
88475--88615	74	1.9	74	92	0	237	21	17	34	26	1.96
90847--90875	14	2.0	15	93	6	51	51	20	0	27	1.47
94820--94863	22	2.0	22	86	8	63	38	0	6	54	1.27
98053--98202	43	3.5	43	77	5	160	27	16	24	32	1.96
107217--107264	11	4.3	11	77	15	53	52	18	4	25	1.63
107217--107262	23	2.1	21	84	8	56	52	19	4	23	1.64
107997--108163	43	3.9	42	77	11	153	30	25	19	23	1.98
107999--108163	85	1.9	85	84	9	221	30	25	19	24	1.98
111519--111668	43	3.5	43	75	8	144	27	16	24	32	1.96
111946--111988	18	2.4	18	88	0	68	30	16	13	39	1.87
112259--112319	24	2.4	23	81	10	59	18	3	29	49	1.63
112274--112325	24	2.1	25	82	7	61	21	1	26	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117079--118146	40	26.7	40	94	0	1807	25	21	26	25	2.00

Tables:   1

The End!