Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold3683.1
Parameters: 2 7 7 80 10 50 1000
Length:  110682

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1059--1200
71
2.0
71
98
0
275
26
27
22
23
1.99
2907--2946
17
2.2
19
86
8
57
42
5
7
45
1.54
6527--6580
24
2.2
25
78
15
60
11
22
3
62
1.43
13271--13316
20
2.3
20
88
7
67
56
4
23
15
1.57
18119--18173
18
3.0
20
70
25
57
9
27
0
63
1.24
18214--18260
15
3.1
15
84
9
60
12
17
0
70
1.17
20924--20961
10
3.8
10
83
13
51
26
15
28
28
1.96
23051--23168
55
2.1
55
83
6
150
25
21
13
39
1.90
23793--23847
20
2.8
20
88
0
83
29
16
29
25
1.97
42288--42333
18
2.6
19
80
10
53
54
10
0
34
1.36
45320--45415
33
3.2
33
68
27
102
33
8
14
43
1.75
47444--47537
46
2.0
46
93
0
161
31
22
21
24
1.98
50859--50920
10
5.9
10
74
10
52
33
32
3
30
1.74
50859--50921
21
3.0
21
88
2
90
33
33
3
30
1.74
52711--52768
10
5.7
10
76
11
64
29
27
13
29
1.94
52711--52771
20
3.0
20
83
9
79
27
26
13
32
1.93
61158--61191
9
3.4
10
92
8
52
23
0
20
55
1.43
61230--61354
55
2.3
54
90
6
198
32
12
24
29
1.93
61340--61428
45
2.0
44
80
8
101
35
7
19
37
1.81
64227--64301
20
3.8
20
78
5
82
26
26
20
26
1.99
64227--64301
40
1.9
40
83
8
100
26
26
20
26
1.99
70392--70613
111
2.0
111
94
0
390
35
21
20
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71455--71508
20
2.7
20
82
0
63
24
20
18
37
1.94
71455--71528
30
2.5
30
86
8
98
21
20
18
39
1.93
71455--71519
20
3.2
20
71
16
53
23
21
16
38
1.93
72975--73236
133
2.0
132
89
6
408
38
14
19
27
1.91
73272--73347
13
5.5
13
72
17
55
76
3
6
13
1.12
73326--73379
17
3.5
16
81
18
62
74
5
14
5
1.19
73272--73348
31
2.9
25
78
19
84
75
3
6
14
1.15
73272--73363
42
2.2
43
84
9
118
75
5
7
11
1.19
74422--74455
18
1.9
18
88
5
52
52
2
35
8
1.47
76399--76448
20
2.5
21
81
15
61
34
6
26
34
1.81
76949--76986
20
1.9
19
89
5
58
23
31
15
28
1.96
79847--79888
22
1.9
22
95
0
75
28
33
7
30
1.84
83149--83223
33
2.2
33
90
6
116
14
25
4
56
1.56
83162--83220
17
3.5
17
77
15
68
15
22
3
59
1.51
83162--83223
18
3.6
18
78
12
76
16
22
3
58
1.52
90421--90485
20
3.3
19
73
16
51
38
16
21
23
1.93
93925--94033
54
2.0
54
98
0
209
36
11
11
40
1.78
103611--103638
10
2.8
10
100
0
56
17
0
7
75
1.03
103675--103715
14
3.0
14
85
7
50
21
12
0
65
1.25
103979--104087
54
2.0
54
96
0
200
37
13
10
38
1.79

Tables:   1

The End!