Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold3740.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106340
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Warning! 258 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:63538 original size:132 final size:132
Alignment explanation
Indices: 63296--67600 Score: 5128
Period size: 132 Copynumber: 32.5 Consensus size: 132
63286 ATCGAAGATG
* * * * *
63296 AAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTTGAGAAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * *
63361 AATATGGTGAATCTTACCTTCCCAATACAGCGGAGAAGCAGATTTAAGGCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
63426 GC-
131 -CT
* * * * *
63428 AAGCAGTAGTGGAGTCGGTTGAAGAGTGCAAATTCTGTCACCCTAAGCAGAAAT-GATGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
* *
63492 GAATATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAAATTTAAGCCATTAGTCCTATCAC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
63557 CCT
130 CCT
* *
63560 AAGTAGTAGTGGAGTAGGTTG-AGAATTGCAGATTCTGTCACCCTAAGCTGTAGTGGAGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * * * * * *
63624 GAAGATGGTCAATCTTATCTTCTCAAGATAGTGGAGAAGAAGATTTAAGCCATTAGTCCAATCTC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
63689 CCT
130 CCT
* * * * * **
63692 AAGCAATAGGGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATTA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * *
63757 AAAATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGGCATTAGTCCTATCTCC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
63822 CT
131 CT
* * *
63824 AAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTATAACCCTAAGCAGTAGT-GATGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
* * *
63888 GAAGATTGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCGTATCAA
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
63953 CCT
130 CCT
*
63956 AAGCAGTAGTGGAGTAGGTTG-AGAATTGCATATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * * * *
64020 GGAGATGGTGAATCTTATCTTCCCAATACATTGGAGAAGCAGATTTAAGTCATAACTCCTATCAC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
64085 CCT
130 CCT
* * * **
64088 AAGCAGTAGTGGAGTAGGTTCAAGATTACAGATTCTGTCACCCTAAGCGGTAGTGGAGCAGATTA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* *
64153 AAGATGGTGAATCTTATCTTCCCAACACAGTGGAGAAGCAGATTTAAGGCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
*
64218 GT
131 CT
* * * * *
64220 AAGCAGTAGTGGAGTCGGTTGAAGAGTGCAAATTCTGTCACCCTAAGCAGAAAT-GATGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
* ** * * *
64284 GAATATATTGAATCTTATTTTCCTAATACATTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
64349 CCT
130 CCT
* *
64352 AAGTAGTAGTGGAGTAGGTTG-AGAATTGCAGATTCTGTCACCCTAAGCAGTATTGGAGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * * * * * * *
64416 GAAGATGGTCAATCTTATCTTCTCAAGATAGTGGAGAAGAAGACTTAAGCCATTAGTCCAATCTC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
64481 CCT
130 CCT
* * * * * **
64484 AAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTATCACCCTAAACAGTAGTGAAGCAGATTA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * *
64549 AAAATGGCGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGGCATTAGTTCTATCTCC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
64614 CT
131 CT
* * *
64616 AAGCAGTAGTTGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGAAGT-GATGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
* *
64680 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCAA
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
64745 CCT
130 CCT
*
64748 AAGCAGTAGTGGAGTAGGTTG-AGAATTGCATATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * *
64812 GAAGATGGTGAATCTTATCTTCCCAATACATTGGAGAAGCAGATTTAAGTCATAAGTCCTATCAC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
64877 CCT
130 CCT
* * * *
64880 AAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCGGTAGTGGAGAATATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * * *
64945 AAGAAT-GTGAATCTTATCTTCCCAACACAGTAGAGAAGCAGATTTAAGCCTTTA-ACGCAATCT
66 AAG-ATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC-CTATCA
65008 CCCT
129 CCCT
* * ** *
65012 AAGCAGTAGTGGAGTAGGTTGTAGATTGCAGATTCTGCCACCCTAA-CGAGTAGTGGAGTGGATT
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC-AGTAGTGGAGCAGATC
* ** *
65076 GAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTTTTATCTC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
65141 CCT
130 CCT
* * * ** ** * *
65144 AAGCAGTACTGGATTAGGTTAAAGATTATAGATTCTGTCACCCTAAATAGTAGTGAAGTAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * * *
65209 AATATGATTAATCTGACCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
65274 CT
131 CT
* * * * **
65276 AAGCAGTAGTGGAGTAGGTTGGAGCTTGCAAATTCTTTCACCCTAAGCAGTAGTGGAGTGGAT-G
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * *
65340 AAGATGGTGAATCTTACCTTCCCAATATAGTGGAGAAGCAGATTTAAGCCATTAG-CCCATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
65404 CT
131 CT
* * *
65406 AAGAAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGGAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
65471 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
65536 CT
131 CT
* ** * *
65538 AACCAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTAACCCTAAGTAGTAGTGGAGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * **
65603 AATATGGCGAATCTTAACTTCCTAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATT
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
65668 CT
131 CT
* * * **
65670 AAGCAGTAGTGGAGTAGGTTTAAGATTACAGATTCTGTCACCTTAAGCAGTAGTGGAGTGGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * *
65735 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGGAGATTTAAGCCATTATTCCTATCTCC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
65800 CT
131 CT
* * * * * *
65802 AAGCAGTAGTGGAGTAGGTTGAAGATTACAAATTTTGTCACCCTAAACAGTAGTGCAGCAGATCA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * *
65867 AAAATGGTGAATCTTATCTGT-CCAATACAGTGGAGAAGCAGATTTATGACATTAGTCCTATCAC
66 AAGATGGTGAATCTTATCT-TCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
*
65931 CGT
130 CCT
* * * * * *
65934 AAGCAGTAGTGAAGTTGGTTAAAGATTGTAGATTCTGTCACCCTAAGCAGAAAT-GATGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATC
* * * * * *
65998 AAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAACAGATTTCAGGCATTTGTCCTATCAC
65 GAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
*
66063 CGT
130 CCT
* * ** *
66066 AAGCAGTAGTGGAGTCGG-TGTAAGAGTGCAGAATT-TGTCACCCTAAGCAAAAAT-GATGCAGA
1 AAGCAGTAGTGGAGTAGGTTG-AAGATTGCAG-ATTCTGTCACCCTAAGCAGTAGTGGA-GCAGA
* *
66128 TCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATC
63 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
66193 ACCCT
128 ACCCT
* * *
66198 AAGTAGTAGTGGAGTAGG-TGGAGAATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 AAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * ** * * *
66262 GAAGATGGTGATTCTTATCTTCCATTAGTCCAATCTCCCTAAGCAGTAGCCGAGTCGGTTGAAG-
65 GAAGATGGTGAATCTTATCTT-C------CCAAT-ACAGT--GGAGAAGCAGA-T---TT-AAGC
* *
66326 -ATTACAGATTCTGTCACCCT
115 CATT--AG-TCCTATCACCCT
* * * * * * * * * *
66346 AAACAGTAGTGGAGTAGATGGAATA-TG-ATGAATCT-T-ACCTTCCCAATACAGCAGAGAAGCA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCA-C--CCTAA-GCAGTAGTGGAGCA
** * * * * * *
66407 GATTTAAGCCAT--T-AGTCCTATC-ACCCGAAGTAATAGTGGAGTAG--G-TTAAAG--ATTGA
61 GATCGAAG--ATGGTGAATCTTATCTTCCC-AA-T-ACAGTGGAGAAGCAGATTTAAGCCATT--
* * *
66463 ATTTTCTGTCACCCT
119 A-GTCCTATCACCCT
* * ** * **
66478 AAGCAGTAGTGGAGTAGGTTGAAGATTACCGATTCTGTCACCCTAAAAAGTAGCGGAGCAGATAA
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * *
66543 AAAATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGGCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
66608 CT
131 CT
* * *
66610 ATA-CAGTAGTGGAGTCGGTTGAAGAGTGCAGATTCTG-CACCCTAAGCAGAAGT-GATGCAGAT
1 A-AGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGAT
* * * * *
66672 CGGAGATGGTGAAACTTATCTCCCCAATGCAATGGAGAAGCAGATTTAAGCCA--AGTCCTATCA
64 CGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCA
*
66735 ACCT
129 CCCT
* *
66739 AAGCCGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * *
66804 AAGATGGTGATTCTTATCTTCCCAACATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
66869 CT
131 CT
* * * *
66871 AAGTAGTAATGGAGTAGGTTGAAGATTGCAGATTCGGTTACCCTAAGCAGTAGTGGAGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * * * * *
66936 AATATGGTGCATCTTATCGTCCCTATATAGTGAAGAAGGAGATTTAAGCCATTAGTCTTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
67001 CT
131 CT
* * * *
67003 AAGCAGTAATGGAGTAGGGTGAAGAGTGCAGATTCTGTCACCCTAAGCAGTAGTGGTGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* *
67068 AAGATGGTGAATCTTATATTCCCAATACAGTGGAGAAGCATATTTAAGCCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
67133 CT
131 CT
* * * * *
67135 TAGAAGTAGTCGAGTAGGTTGAAGATTGCAAATTCTGTCACCCTAAGCAGTAGTAGAGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
** *
67200 AAGATGGTGAATCTTATCTTCAAAATAAAGTGGAGAAGCAGATTTAA-CGCATTAGTCCTATCAC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGC-CATTAGTCCTATCAC
67264 CCT
130 CCT
* * *
67267 AAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTCGTGGAGCAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * *
67332 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGAAGACTTAAGCCATTAGTCCAATCTCC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
67397 CT
131 CT
* * * * *
67399 AAGCAGTAATGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGTAGATCG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
* * * * * * * * *
67464 AATATGATTAATCTTACCTTCCCAATATAGCGGAGTAGTAGATTTAAGTCATTAGTCCTATCACC
66 AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
67529 CT
131 CT
* * * * * *
67531 AAGCAGTAGTGGAGTAGGTGGAAGATTACATATTCTGTCACCCTAAGCAATAGTGGAGCAGGTTG
1 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
67596 AAGAT
66 AAGAT
67601 TACAGATTCT
Statistics
Matches: 3568, Mismatches: 521, Indels: 168
0.84 0.12 0.04
Matches are distributed among these distances:
128 1 0.00
129 48 0.01
130 143 0.04
131 213 0.06
132 3006 0.84
133 43 0.01
134 2 0.00
135 4 0.00
136 1 0.00
138 1 0.00
139 5 0.00
140 10 0.00
141 2 0.00
142 9 0.00
143 1 0.00
145 4 0.00
146 6 0.00
147 11 0.00
148 37 0.01
149 19 0.01
151 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
AAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACC
CT
Found at i:66359 original size:104 final size:104
Alignment explanation
Indices: 66179--66388 Score: 260
Period size: 104 Copynumber: 2.0 Consensus size: 104
66169 TAGATTTAAG
* * ** * * *
66179 CCATTAGTCCTATCACCCTAAGTAGTAGTGGAGTAGGTGGAGAATTGCAGATTTTGTCACCCTAA
1 CCATTAGTCCAATCACCCTAAGCAGTAGCCGAGTAGGTGAAGAATTACAGATTCTGTCACCCTAA
* * * *
66244 GCAGTAGTGGAGCAGATCGAAGATGGTGATTCTTATCTT
66 ACAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTT
* *
66283 CCATTAGTCCAATCTCCCTAAGCAGTAGCCGAGTCGGTTGAAG-ATTACAGATTCTGTCACCCTA
1 CCATTAGTCCAATCACCCTAAGCAGTAGCCGAGTAGG-TGAAGAATTACAGATTCTGTCACCCTA
* * *
66347 AACAGTAGTGGAGTAGATGGAATATGATGAATCTTACCTT
65 AACAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTT
66387 CC
1 CC
66389 CAATACAGCA
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
104 85 0.96
105 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (104 bp):
CCATTAGTCCAATCACCCTAAGCAGTAGCCGAGTAGGTGAAGAATTACAGATTCTGTCACCCTAA
ACAGTAGTGGAGCAGATCGAAGATGATGAATCTTACCTT
Found at i:66514 original size:44 final size:44
Alignment explanation
Indices: 66440--66523 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
66430 CCCGAAGTAA
**
66440 TAGTGGAGTAGGTTAAAGATTGAATTTTCTGTCACCCTAAGCAG
1 TAGTGGAGTAGGTTAAAGATTGAAGATTCTGTCACCCTAAGCAG
* *
66484 TAGTGGAGTAGGTTGAAGATT-ACCGATTCTGTCACCCTAA
1 TAGTGGAGTAGGTTAAAGATTGA-AGATTCTGTCACCCTAA
66524 AAAGTAGCGG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 1 0.03
44 34 0.97
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
TAGTGGAGTAGGTTAAAGATTGAAGATTCTGTCACCCTAAGCAG
Found at i:66530 original size:44 final size:44
Alignment explanation
Indices: 66440--66535 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
66430 CCCGAAGTAA
** **
66440 TAGTGGAGTAGGTTAAAGATTGAATTTTCTGTCACCCTAAGCAG
1 TAGTGGAGTAGGTTAAAGATTGAAGATTCTGTCACCCTAAAAAG
* *
66484 TAGTGGAGTAGGTTGAAGATT-ACCGATTCTGTCACCCTAAAAAG
1 TAGTGGAGTAGGTTAAAGATTGA-AGATTCTGTCACCCTAAAAAG
*
66528 TAGCGGAG
1 TAGTGGAG
66536 CAGATAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.02
44 43 0.98
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
TAGTGGAGTAGGTTAAAGATTGAAGATTCTGTCACCCTAAAAAG
Found at i:66622 original size:176 final size:175
Alignment explanation
Indices: 66298--66663 Score: 475
Period size: 176 Copynumber: 2.1 Consensus size: 175
66288 AGTCCAATCT
** * * * *
66298 CCCTAAGCAGTAGCCGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGTAG
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGCGGAGCAG
** *
66363 ATGGAATATGATGAATCTTACCTTCCCAATACAGCAGAGAAGCAGATTTAAGCCATTAGTCCTAT
66 ATAAAAAATGATGAATCTTACCTTCCCAATACAGCAGAGAAGCAGATTTAAGCCATTAGTCCTAT
* **
66428 CACCCGAAGTAATAGTGGAGTAGGTTAAAGATTGAATTTTCTGTCA
131 CACCCGAAGTAATAGTGGAGTAGGTTAAAGAGTGAAGATTCTG-CA
*
66474 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACCGATTCTGTCACCCTAAAAAGTAGCGGAGCAG
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGCGGAGCAG
* ** ** *
66539 ATAAAAAATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGGCATTAGTCCTAT
66 ATAAAAAATGATGAATCTTACCTTCCCAATACAGCAGAGAAGCAGATTTAAGCCATTAGTCCTAT
* * * *
66604 CACCC-TA-TACAGTAGTGGAGTCGGTTGAAGAGTGCAGATTCTGCA
131 CACCCGAAGTA-A-TAGTGGAGTAGGTTAAAGAGTGAAGATTCTGCA
*
66649 CCCTAAGCAGAAGTG
1 CCCTAAGCAGTAGTG
66664 ATGCAGATCG
Statistics
Matches: 164, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
174 2 0.01
175 18 0.11
176 144 0.88
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (175 bp):
CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGCGGAGCAG
ATAAAAAATGATGAATCTTACCTTCCCAATACAGCAGAGAAGCAGATTTAAGCCATTAGTCCTAT
CACCCGAAGTAATAGTGGAGTAGGTTAAAGAGTGAAGATTCTGCA
Found at i:66807 original size:44 final size:44
Alignment explanation
Indices: 66729--69691 Score: 156
Period size: 44 Copynumber: 67.5 Consensus size: 44
66719 AAGCCAAGTC
* * *
66729 CTATCAACCTAAGCCGTAGTGGAGTC-GGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGCAGATT
* * **
66773 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * *
66816 CTTATCTTCCC-AA-CA-TAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGCAGATT
* * * *
66861 CTATCACCCTAAGTAGTAATGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** * * *
66905 CGGTTACCCTAAGCAGTAGTGGAGCAGATCGAATATGGTGC--A-T
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGCAGATT
* * * *
66948 CTTATCGTCCCT-A-TA-TAGTGAAGAAGGAGATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAAGCAGTAGTG--G-AGCAGATTGAAG--ATTGCAGATT
* * ** *
66992 CTTATCACCCTAAGCAGTAATGGAGTAGGGTGAAGAGTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** *
67037 CTGTCACCCTAAGCAGTAGTGGTGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * * *
67080 CTTAT-ATTCCC-AATACAGTGGAGAAGCATATTTAAGCCATT--AG-TC
1 C-TATCA--CCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * * * * *
67125 CTATCACCCTTAGAAGTAGTCGAGTAGGTTGAAGATTGCAAATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** *
67169 CTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** ** ** * * * * *
67212 CTTATCTTCAAAATAAAGTGGAGAAGCAGATTTAACGCATT--AG-TC
1 C-TATCACCCTAA-GCAGTAGTGGAGCAGATTGAA-G-ATTGCAGATT
* * *
67257 CTATCACCCTAAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * ** *
67301 TTGTCACCCTAAGCAGTCGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * * *
67344 CTTATCTTCCC-AATACAGTGGAGAAGAAGACTT-AAGCCATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGA-TTGAAG--ATTGCAGATT
* * * * *
67389 CAATCTCCCTAAGCAGTAATGGAGTC-GGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGCAGATT
* * * * * * *
67433 CTGTCACCCTAAACAGTAGTGGAGTAGATCGAATA-TG-ATTAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCA-GATT
* * * * * *
67476 CTTACCTTCCCAATATAGC-GGAGT--AGTAGATTTAAGTCATT--AG-TC
1 C-TATC-ACCC--TA-AGCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * * * *
67521 CTATCACCCTAAGCAGTAGTGGAGTAGGTGGAAGATTACATATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * *
67565 CTGTCACCCTAAGCAATAGTGGAGCAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* ** * * * * ** *
67609 CTGTCACCCTAAAAAGTGGTGGAGCAGA-TAAAAAATGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** * * * * * * *
67652 CTTATTTTCCC-AATACAGTGGAGAAGTAGATTTAAGGCATT--AG-TC
1 C-TA-TCACCCTAA-GCAGTAGTGGAGCAGATTGAA-G-ATTGCAGATT
* * *
67697 CTATCACCCTATGCAGTAGTGGAGTC-GGTTGAAGAGTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGCAGATT
* * * ** *
67741 CT-GCACCCTAAGCAGAAG-CGATGCAGATCAAAGATGGTG-AAACTT
1 CTATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGAT--TGCAGA-TT
* * * * * * *
67786 CTCTC-CCC-AATGCAATGGAGAAGCAGATTTAAGCCATT--AG-TC
1 CTATCACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
*
67828 CTATCACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGCAGATT
* * * * **
67872 CTGTCACCCTAAGCTGTAGTAGAGCAGATCGAAGA-TGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * *
67915 CTTATCTTCCC-AACACAGTGGAGAAGCAGATTTAAGCCATT--AG-TT
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
** *
67960 CTATCACCCTAAGCAGTAGTGGAGTGGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * *
68004 TTGTCACCCTAAGCAGTAGTGGAGCTGA-TCAA-ATAT-AATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT-TGCA-GATT
* * * * * *
68047 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
** * * *
68091 CTTATCTTCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * ** ** *
68136 CTGTCACCCTAAGCAGTAGTGGAGCATATCAAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** * * * * * * * *
68179 CTTATCTTTCC-AATACAGTGGAGAAGTAGATTTAAGCCATT--TG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * * * *
68224 CTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGAAAATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* ** * ** *
68268 CTTTCACCCTAAGCAGTAGTGGAGTGGATCGAAGA-TGGGGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** *
68311 CTTATC-TTCTCAAG-A-TAGTGGAGAAGCAGATTTAAGCCATT--AG--T
1 C-TATCACCCT-AAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGCAGATT
* * * *
68355 CTAATCTCCCTAAGCAGTAGTGGAGTAGGTTGCAGATTGCAGATT
1 CT-ATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * *
68400 CTCTCATCCTAAACAGTAGTGGAGCAGATCGAATA-TG-ATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCA-GATT
* * * * * * *
68443 CTTACCTTCCC-AA-TA-TAGCGGAGCAGTAGATTTAAGCCATT--TG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAGC---AGATTGAAG--ATTGCAGATT
* * * * *
68488 CTATCACCCTAAGAAGTAGTGGAGTAGGTTGAAGCTTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * *
68532 CTGTCA-CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * * * *
68575 TTGTCACCCTAAACAATAGTGCAGCAGATCGAATA-TG-ATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCA-GATT
* * * * * * * *
68618 CTTACCTTCCC-AATACAGTGGAGAAGAAGATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * * *
68662 CTTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * *
68707 CTGTCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTG-AAACT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGCAGATT
** * * * * * * *
68752 -TATCTTTCC-AATACAGTGGAGAAGCATATTTAAGCCATT--AG-TC
1 CTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * *
68795 CTATCACCCTAAGCAGTAGTGGAGTAGGTTCAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* ** * ** *
68839 CTGTCACCCTAAGCAGTAGTGGAGTGGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * * * *
68882 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAG--T-CATAAGTC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAGATTGCA-GA-TT
* * * * *
68927 CTATCAGCCTAAGTAGTAGTGGAGTAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** *
68971 CTGTCACCCTAAGCGGTAGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * ** ** *
69014 CTTATCTTCCC-AACACAGTAGAGAAGCAGATTTCAGCCATTAGCCCAAT
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATT-GCAGATT
** * * *
69063 CT-TCA---TAAGCAGTAGTCTAGTAGGTAGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * ** *
69103 CTGTCACCCTAAGTAGTAGTGGAGCAGATCGAATA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * * * * *
69146 CTTATCGTCCCTATA-CAGTGGAGAAGGAGATTTAAGCCACT--AG-CT
1 C-TATC-ACCCTA-AGCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * *
69191 CTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * ** * ** *
69235 CTGTCACCCTAAGCAGTGGTGCAGTGGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** * * * * * *
69278 CTTATC-TTCTCAATACAGCAGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATCACCCT-AA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * * *
69323 CTATCTCCCT-A-C-G--GAGAAGCAGATTTAAGGCATT--AG-TT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAA-G-ATTGCAGATT
* * *
69361 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * ** * * * *
69405 CTGTCACCATAAGCAGTAGTGGAGGGGATCGAAGATCG-TGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
** * * *
69448 CTTATC-TTCTCAAG-A-TAGTGGAGAAGCAGATTTAAGCCGTT--AG-TC
1 C-TATCACCCT-AAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGCAGATT
* *
69493 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * * * *
69537 CTGTCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTG-AAACT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TGCAGATT
** * * * * * * *
69582 -TATCTTTCC-AATACAGTGGAGAAGCATATTTAAGCCATT--AG-TC
1 CTATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* * *
69625 CTATCACCCTAAGCAGTAGTGGAGTAGGTTCAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
*
69669 CTGTCACCCTAAGCAGTAGTGGA
1 CTATCACCCTAAGCAGTAGTGGA
69692 TTAGATCGAA
Statistics
Matches: 1985, Mismatches: 664, Indels: 540
0.62 0.21 0.17
Matches are distributed among these distances:
38 31 0.02
39 2 0.00
40 11 0.01
41 66 0.03
42 45 0.02
43 509 0.26
44 842 0.42
45 363 0.18
46 57 0.03
47 33 0.02
48 19 0.01
49 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
Found at i:67606 original size:176 final size:175
Alignment explanation
Indices: 67395--67754 Score: 497
Period size: 176 Copynumber: 2.1 Consensus size: 175
67385 AGTCCAATCT
* * *
67395 CCCTAAGCAGTAATGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGTAG
1 CCCTAAGCAATAATGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGTGGAGCAG
** * * * * *
67460 ATCGAATATGATTAATCTTACCTTCCCAATATAGCGGAGTAGTAGATTTAAGTCATTAGTCCTAT
66 ATAAAAAATGATGAATCTTACCTTCCCAATACAGCGGAGAAGTAGATTTAAGGCATTAGTCCTAT
* *
67525 CACCCTAAGCAGTAGTGGAGTAGGTGGAAGATTACATATTCTGTCA
131 CACCCTAAGCAGTAGTGGAGTAGGTGGAAGAGTACAGATTCTG-CA
* *
67571 CCCTAAGCAATAGTGGAG-CAGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTGGTGGAGCA
1 CCCTAAGCAATAATGGAGTC-GGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGTGGAGCA
* ** *
67635 GATAAAAAATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGTAGATTTAAGGCATTAGTCCTA
65 GATAAAAAATGATGAATCTTACCTTCCCAATACAGCGGAGAAGTAGATTTAAGGCATTAGTCCTA
* * * *
67700 TCACCCTATGCAGTAGTGGAGTCGGTTGAAGAGTGCAGATTCTGCA
130 TCACCCTAAGCAGTAGTGGAGTAGGTGGAAGAGTACAGATTCTGCA
67746 CCCTAAGCA
1 CCCTAAGCA
67755 GAAGCGATGC
Statistics
Matches: 161, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
175 12 0.07
176 149 0.93
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (175 bp):
CCCTAAGCAATAATGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTAGTGGAGCAG
ATAAAAAATGATGAATCTTACCTTCCCAATACAGCGGAGAAGTAGATTTAAGGCATTAGTCCTAT
CACCCTAAGCAGTAGTGGAGTAGGTGGAAGAGTACAGATTCTGCA
Found at i:67953 original size:132 final size:132
Alignment explanation
Indices: 67568--68554 Score: 1298
Period size: 132 Copynumber: 7.5 Consensus size: 132
67558 ACATATTCTG
* * * ** *
67568 TCACCCTAAGCAATAGTGGAGCAGGTTGAAGATTACAGATTCTGTCACCCTAAAAAGTGGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * *
67633 CAGATAAAAAATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGTAGATTTAAGGCATTAGTCC
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
67698 TA
131 TA
* * * * *
67700 TCACCCTATGCAGTAGTGGAGTCGGTTGAAGAGTGCAGATTCTG-CACCCTAAGCAGAAG-CGAT
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-
* * * * *
67763 GCAGATCAAAGATGGTGAAACTTCTCTCCCCAATGCAATGGAGAAGCAGATTTAAGCCATTAGTC
65 GCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
67828 CTA
130 CTA
* * *
67831 TCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCTGTAGTAGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * *
67896 CAGATCGAAGATGGTGATTCTTATCTTCCCAACACAGTGGAGAAGCAGATTTAAGCCATTAGTTC
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
67961 TA
131 TA
* *
67963 TCACCCTAAGCAGTAGTGGAGTGGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * ** *
68028 CTGATCAAATATAATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCT
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
68093 TA
131 TA
** *
68095 TCTTCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * *
68160 CATATCAAAGATGGTGAATCTTATCTTTCCAATACAGTGGAGAAGTAGATTTAAGCCATTTGTCC
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
68225 TA
131 TA
* * * *
68227 TCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGAAAATTCTTTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
** * * * * *
68292 TGGATCGAAGATGGGGAATCTTATCTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT-C
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
68356 TAA
131 T-A
* * * * *
68359 TCTCCCTAAGCAGTAGTGGAGTAGGTTGCAGATTGCAGATTCTCTCATCCTAAACAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * * * * *
68424 CAGATCGAATATGATGAATCTTACCTTCCCAATATAGCGGAGCAGTAGATTTAAGCCATTTGTCC
66 CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
68489 TA
131 TA
* * *
68491 TCACCCTAAGAAGTAGTGGAGTAGGTTGAAGCTTGTAGATTCTGTCA-CCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
68555 TAGGTTAAAG
Statistics
Matches: 743, Mismatches: 107, Indels: 11
0.86 0.12 0.01
Matches are distributed among these distances:
130 2 0.00
131 129 0.17
132 608 0.82
133 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
CAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
TA
Found at i:68543 original size:43 final size:43
Alignment explanation
Indices: 68495--68582 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
68485 GTCCTATCAC
* * *
68495 CCTAAGAAGTAGTGGAGTAGGTTGAAGCTTGTAGATTCTGTCA
1 CCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
* *
68538 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTTTGTCA
1 CCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
68581 CC
1 CC
68583 CTAAACAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (43 bp):
CCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
Found at i:68569 original size:175 final size:176
Alignment explanation
Indices: 68362--68730 Score: 569
Period size: 175 Copynumber: 2.1 Consensus size: 176
68352 AGTCTAATCT
** * * *
68362 CCCTAAGCAGTAGTGGAGTAGGTTGCAGATTGCAGATTCTCTCATCCTAAACAGTAGTGGAGCAG
1 CCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTCTCACCCTAAACAATAGTGCAGCAG
* * * *
68427 ATCGAATATGATGAATCTTACCTTCCCAATATAGCGGAGCAGTAGATTTAAGCCATTTGTCCTAT
66 ATCGAATATGATGAATCTTACCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
* * *
68492 CACCCTAAGAAGTAGTGGAGTAGGTTGAAGCTTGTAGATTCTGTCA
131 CACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
* *
68538 -CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTTTGTCACCCTAAACAATAGTGCAGCAG
1 CCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTCTCACCCTAAACAATAGTGCAGCAG
* *
68602 ATCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCTTAT
66 ATCGAATATGATGAATCTTACCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
* *
68667 CTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
131 CACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
68713 CCCTAAGCAGTAGTGGAG
1 CCCTAAGCAGTAGTGGAG
68731 CAAATCGAAG
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 157 0.90
176 17 0.10
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (176 bp):
CCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTCTCACCCTAAACAATAGTGCAGCAG
ATCGAATATGATGAATCTTACCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
CACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCA
Found at i:68775 original size:132 final size:132
Alignment explanation
Indices: 68538--69333 Score: 1110
Period size: 132 Copynumber: 6.0 Consensus size: 132
68528 GATTCTGTCA
* * * *
68538 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTTTGTCACCCTAAACAATAGTGCAGCAGA
1 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
* * * * *
68603 TCGAATATGATGAATCTTACCTTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCTTATC
66 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
*
68668 TC
131 AC
*
68670 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAAA
1 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
* * *
68735 TCGAAGATGGTGAAACTTATCTTTCCAATACAGTGGAGAAGCATATTTAAGCCATTAGTCCTATC
66 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
68800 AC
131 AC
* **
68802 CCTAAGCAGTAGTGGAGTAGGTTCAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTGGA
1 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
* *
68867 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGTCATAAGTCCTATC
66 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
*
68932 AG
131 AC
* * * *
68934 CCTAAGTAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCGGTAGTGGAGCAGA
1 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
* * * * *
68999 TCGAAGATGGTGAATCTTATCTTCCCAACACAGTAGAGAAGCAGATTTCAGCCATTAGCCCAATC
66 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
**
69064 TT
131 AC
* ** *
69066 CATAAGCAGTAGTCTAGTAGG-TAGAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAG
1 CCTAAGCAGTAGTGGAGTAGGTTA-AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAG
* * * * *
69130 ATCGAATATGGTGAATCTTATCGTCCCTATACAGTGGAGAAGGAGATTTAAGCCACTAG-CTCTA
65 ATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC-CTA
69194 TCAC
129 TCAC
* * * * **
69198 CCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTGGTGCAGTGGA
1 CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
* **
69263 TCGAAGATGGTGAATCTTATCTTCTCAATACAGCAGAGAAGCAGATTTAAGCCATTAGTCCTATC
66 TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
*
69328 TC
131 AC
69330 CCTA
1 CCTA
69334 CGGAGAAGCA
Statistics
Matches: 582, Mismatches: 78, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
131 2 0.00
132 578 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGA
TCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC
AC
Found at i:69349 original size:38 final size:38
Alignment explanation
Indices: 69298--69371 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
69288 CAATACAGCA
*
69298 GAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTACG
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTACG
* *
69336 GAGAAGCAGATTTAAGGCATTAGTTCTATCACCCTA
1 GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTA
69372 AGCAGTAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (38 bp):
GAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTACG
Found at i:69448 original size:170 final size:170
Alignment explanation
Indices: 69165--69503 Score: 525
Period size: 170 Copynumber: 2.0 Consensus size: 170
69155 CCTATACAGT
*
69165 GGAGAAGGAGATTTAAGCCACTAGCTCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCACTAGCTCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * * * * *
69230 AGATTCTGTCACCCTAAGCAGTGGTGCAGTGGATCGAAGATGGTGAATCTTATCTTCTCAATACA
66 AAATTCTGTCACCATAAGCAGTAGTGCAGGGGATCGAAGATCGTGAATCTTATCTTCTCAAGACA
*
69295 GCAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAC
131 GCAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAC
* * * *
69335 GGAGAAGCAGATTTAAGGCATTAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCACTAGCTCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* *
69400 AAATTCTGTCACCATAAGCAGTAGTGGAGGGGATCGAAGATCGTGAATCTTATCTTCTCAAGATA
66 AAATTCTGTCACCATAAGCAGTAGTGCAGGGGATCGAAGATCGTGAATCTTATCTTCTCAAGACA
** *
69465 GTGGAGAAGCAGATTTAAGCCGTTAGTCCTATCACCCTA
131 GCAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTA
69504 AGCAGTAGTG
Statistics
Matches: 152, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
170 152 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (170 bp):
GGAGAAGCAGATTTAAGCCACTAGCTCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGC
AAATTCTGTCACCATAAGCAGTAGTGCAGGGGATCGAAGATCGTGAATCTTATCTTCTCAAGACA
GCAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAC
Found at i:69497 original size:132 final size:132
Alignment explanation
Indices: 69335--69938 Score: 863
Period size: 132 Copynumber: 4.6 Consensus size: 132
69325 ATCTCCCTAC
* *
69335 GGAGAAGCAGATTTAAGGCATTAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * ** * *
69400 AAATTCTGTCACCATAAGCAGTAGTGGAGGGGATCGAAGATCGTGAATCTTATCTTCTCAAGATA
66 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGACA
69465 GT
131 GT
*
69467 GGAGAAGCAGATTTAAGCCGTTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * *
69532 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAAATCGAAGATGGTGAAACTTATCTT-TCCAATAC
66 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCT-CAAGAC
69596 AGT
130 AGT
* *
69599 GGAGAAGCATATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTCAAGATTGC
1 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
** * * *
69664 AGATTCTGTCACCCTAAGCAGTAGTGGATTAGATCGAATATGATGAATCTTACCTTC-CGAATG-
66 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTC-AA-GA
69727 CAGT
129 CAGT
** * * *
69731 GGAGAAATAGATTTAAGCCAATAGTCTTATCGCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * * * * * *
69796 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGTTGGAATATGGTGAATCATATATTCCCAATACA
66 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGACA
69861 GT
131 GT
* *
69863 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTACTGAAGTAGGTTGAAGATTGC
1 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
69928 AGATTCTGTCA
66 AGATTCTGTCA
69939 NNNNNNNNNN
Statistics
Matches: 420, Mismatches: 46, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
131 2 0.00
132 417 0.99
133 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGACA
GT
Found at i:71640 original size:176 final size:175
Alignment explanation
Indices: 71435--71794 Score: 639
Period size: 176 Copynumber: 2.0 Consensus size: 175
71425 ATTAGTCCTA
* *
71435 TCACCCTCAGGAGTAGTGGAGTAGGTTGAAGATTGCAGAGTCTGTCACCTTAAGCTGTAGTGGAG
1 TCACCCT-AGGAGTAGTGGAGTAGGTTGAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAG
*
71500 TGGAACGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
65 TGGAACGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCC
*
71565 TATCTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTG
130 TATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTG
* *
71611 TCACCCTAGGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTGGTGGAG
1 TCACCCTAGG-AGTAGTGGAGTAGGTTGAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAG
*
71676 TGGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCC
65 TGGAACGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCC
71741 TATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTG
130 TATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTG
71787 TCACCCTA
1 TCACCCTA
71795 ACCAGTTGTG
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
175 3 0.02
176 173 0.98
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (175 bp):
TCACCCTAGGAGTAGTGGAGTAGGTTGAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAGT
GGAACGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCT
ATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTG
Found at i:71687 original size:44 final size:44
Alignment explanation
Indices: 71570--71676 Score: 178
Period size: 44 Copynumber: 2.4 Consensus size: 44
71560 TGTCCTATCT
*
71570 CCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCA
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCA
* *
71614 CCCTAGGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCA
*
71658 CCCTAAGCAGTGGTGGAGT
1 CCCTAAGCAGTAGTGGAGT
71677 GGATCGAAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCA
Found at i:71750 original size:88 final size:88
Alignment explanation
Indices: 71485--71757 Score: 250
Period size: 88 Copynumber: 3.1 Consensus size: 88
71475 TCTGTCACCT
* *
71485 TAAGCTGTAGTGGAGTGGAACGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGAT
1 TAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGAT
*
71550 TTAAGCCATTTGTCCTATCTCCC
66 TTAAGCCATTAGTCCTATCTCCC
* * *** * * * * * ** * * *
71573 TAAGCAGTACTGGAGTAGG-TTGAAGATTACAGATTC-TGTC-ACCCTAGGCAGTAGTGGAGTAG
1 TAAGCAGTAGTGGAGT-GGATCGAAGA-TGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAG
* * * * *
71635 GTTGAAG--ATTGCAGATTCTGTCACCC
64 ATTTAAGCCATT--AG-TCCTATCTCCC
*
71661 TAAGCAGTGGTGGAGTGGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGAT
1 TAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGAT
71726 TTAAGCCATTAGTCCTATCTCCC
66 TTAAGCCATTAGTCCTATCTCCC
71749 TAAGCAGTA
1 TAAGCAGTA
71758 CTAGAGTAGG
Statistics
Matches: 130, Mismatches: 45, Indels: 20
0.67 0.23 0.10
Matches are distributed among these distances:
85 3 0.02
87 27 0.21
88 69 0.53
89 28 0.22
91 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (88 bp):
TAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGAT
TTAAGCCATTAGTCCTATCTCCC
Found at i:72229 original size:233 final size:233
Alignment explanation
Indices: 71822--72267 Score: 640
Period size: 233 Copynumber: 1.9 Consensus size: 233
71812 TAGAATTTGA
* * * * * *
71822 TGAATCTGACCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTGACCTTCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGCCCAATCTCCATAAGCA
* *
71887 GTACTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAACCAGTTGTGAAGCAGATAGAATTT
66 GTACTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAACCAGTAGTGAAGCAGATAGAATAT
* * *
71952 GATGAATCTGACCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAG
131 GATGAATCTGACCGTCCCAATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAG
72017 CAGTACTAGAGTAGGTTGGTGGTGCAGATCGAAGATGG
196 CAGTACTAGAGTAGGTTGGTGGTGCAGATCGAAGATGG
* * *
72055 TGAATCTTATCTTCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGCCCAATCTTCATAAGCA
1 TGAATCTGACCTTCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGCCCAATCTCCATAAGCA
* ** * ** * *
72120 GTAGTCTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAATAT
66 GTACTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAACCAGTAGTGAAGCAGATAGAATAT
* * * *
72185 GGTGAATCTTATCGTCCCTATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAG
131 GATGAATCTGACCGTCCCAATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAG
* *
72250 CAGTAGTGGAGTAGGTTG
196 CAGTACTAGAGTAGGTTG
72268 AACCCTAAGC
Statistics
Matches: 185, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
233 185 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (233 bp):
TGAATCTGACCTTCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGCCCAATCTCCATAAGCA
GTACTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAACCAGTAGTGAAGCAGATAGAATAT
GATGAATCTGACCGTCCCAATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAG
CAGTACTAGAGTAGGTTGGTGGTGCAGATCGAAGATGG
Found at i:72280 original size:27 final size:27
Alignment explanation
Indices: 72242--72296 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
72232 TAGTCCTATC
72242 ACCCTAAGCAGTAGTGGAGTAGGTTGA
1 ACCCTAAGCAGTAGTGGAGTAGGTTGA
*
72269 ACCCTAAGCAGTAGTGGAGTCGGTTGA
1 ACCCTAAGCAGTAGTGGAGTAGGTTGA
72296 A
1 A
72297 AATTGCAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (27 bp):
ACCCTAAGCAGTAGTGGAGTAGGTTGA
Found at i:72403 original size:159 final size:159
Alignment explanation
Indices: 72114--72419 Score: 522
Period size: 159 Copynumber: 1.9 Consensus size: 159
72104 CCAATCTTCA
* * *
72114 TAAGCAGTAGTCTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATC
1 TAAGCAGTAGTCGAGTAGGTTGAAAATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
* * * * *
72179 GAATATGGTGAATCTTATCGTCCCTATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCAC
66 GAAGATGGTGAATCTTATCCTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCAATCAC
72244 CCTAAGCAGTAGTGGAGTAGGTTGAACCC
131 CCTAAGCAGTAGTGGAGTAGGTTGAACCC
* *
72273 TAAGCAGTAGTGGAGTCGGTTGAAAATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGTCGAGTAGGTTGAAAATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
72338 GAAGATGGTGAATCTTATCCTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCAATCAC
66 GAAGATGGTGAATCTTATCCTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCAATCAC
72403 CCTAAGCAGTAGTGGAG
131 CCTAAGCAGTAGTGGAG
72420 CAGTTCGAAG
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 137 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (159 bp):
TAAGCAGTAGTCGAGTAGGTTGAAAATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
GAAGATGGTGAATCTTATCCTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCAATCAC
CCTAAGCAGTAGTGGAGTAGGTTGAACCC
Found at i:72461 original size:88 final size:88
Alignment explanation
Indices: 72311--72507 Score: 349
Period size: 88 Copynumber: 2.2 Consensus size: 88
72301 GCAGATTCTG
*
72311 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAATGGAGAA
72376 GAAGATTTAAGCCATTAGTCCAA
66 GAAGATTTAAGCCATTAGTCCAA
* *
72399 TCACCCTAAGCAGTAGTGGAGCAGTTCGAAGATGGTGAATCTTATCTTCCCAATACAATGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAATGGAGAA
* *
72464 GTAGATTTAAGCCATTAGTCCTA
66 GAAGATTTAAGCCATTAGTCCAA
72487 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
72508 TAGGTTGAAG
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 104 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTCCCAATACAATGGAGAA
GAAGATTTAAGCCATTAGTCCAA
Found at i:72801 original size:44 final size:44
Alignment explanation
Indices: 72751--72944 Score: 132
Period size: 44 Copynumber: 4.4 Consensus size: 44
72741 ATTAGCTCTA
72751 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * ** *
72795 TCACCCTAAGCAGTAATGGAGT-GGATCGAAGA-TGGTGAATCT-
1 TCACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTG
* * * * * * * *
72837 T-ATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATT--AG-TTCTA
1 TCA-C-CCT-AA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTG
* * *
72883 TCCCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
72927 TCACCCTAAGCAGTAGTG
1 TCACCCTAAGCAGTAGTG
72945 AAGCAGATCG
Statistics
Matches: 108, Mismatches: 28, Indels: 28
0.66 0.17 0.17
Matches are distributed among these distances:
41 4 0.04
42 2 0.02
43 28 0.26
44 51 0.47
45 17 0.16
46 4 0.04
47 1 0.01
48 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
Found at i:74825 original size:132 final size:132
Alignment explanation
Indices: 70204--74825 Score: 4549
Period size: 132 Copynumber: 35.0 Consensus size: 132
70194 NNAATCTGAC
*
70204 CTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* ** *
70269 AGGTTGAAGATTGCTA-ATTCTTTCACTATAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCT
66 AGGTTGAAGATTGC-AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
70333 TAT
130 TAT
* * *
70336 CTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
** *
70401 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATATT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
70466 AT
131 AT
* * * * * *
70468 CTTCTCAATACAGTAGAGAAGCAAATTTAAGCCATTAGTCCTATCTCCCTAAGCCGTACTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * *
70533 AGGTTGAAGATTACAGATTCTGTAACCCTAAGCAGTAGTGAAGCAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
70598 AT
131 AT
* * * * * * *
70600 CTTCTCAATACAGTAGAGAAGTAGATTTAAGTCAGTCGTCCTATCACCCTGAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * *
70665 AGGTTGAAGATTGCAAAATT-TTTCACCCTAAGCAGTAGTGGAACGGATCGAAGATGGTGAATCT
66 AGGTTGAAGATTGC-AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
70729 TAT
130 TAT
* * * * * *
70732 CTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTTGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * * *
70797 AGGTTGAGGATTGTAGATTCTGTCACCCTAAACAGTAGTGGAGAAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
70862 AC
131 AT
* * *
70864 CTTCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAG-CTCTATCACCCTAAGCAGTAGTGAAA
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTGGAG
* *
70928 TAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGT-GATGGAGATCGAAGATGGTGAATC
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATC
70992 TTAT
129 TTAT
* * * * *
70996 ATTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTGGTGGAGA
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* *
71061 AGGTTG-AGAATTGTAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGGTGAATCT
66 AGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
71125 TAT
130 TAT
* *
71128 CTTCCCAATACAGTGGAGATGCAGATTTAAGTCA-TACGTCCTATCACCCTAAGCAGTAGTGGAG
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTA-GTCCTATCACCCTAAGCAGTAGTGGAG
* * * * * *
71192 TAGGTTGAAGATTACAGATTCTGTCACCCTAAGTAGTAGTAGAGCAAATCGAATATGGCGAATCT
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
71257 TAT
130 TAT
* * * *
71260 CTTCCTAATATAGTGGAGAAGCAAATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* *
71325 AGGTTGAAGATTGCAGGTTCTGTCACCCTAAGCAGTGGTGGAGCAGATCGAAGATGGTGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
71390 AT
131 AT
* * * *
71392 CTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTCAGGAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * ** *
71457 AGGTTGAAGATTGCAGAGTCTGTCACCTTAAGCTGTAGTGGAGTGGAACGAAGATGGTGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
71522 AT
131 AT
* * * * *
71524 CTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTTGTCCTATCTCCCTAAGCAGTACTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * * ** *
71589 AGGTTGAAGATTACAGATTCTGTCACCCTAGGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCT
*
71653 TGT
130 TAT
* * * * ** ** * * ** *
71656 C-ACCCTAA-GCAGTGGTGGAGTGGATCGAAG--ATGGTGAATCTTATC-TTCTCAATACAGTAG
1 CTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCAT--T-AGTCCTATCACCCT-AA-GCAGTAG
* * * * * * * * * * * * * *
71716 AGAAGCAGATTTAAGCCATT--AG-TCCTATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTA
60 TGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TG
** * *
71778 CAGATTC-TGT
122 GTGAATCTTAT
* * * * ** *** * * * * * * *
71788 C-ACCCTAA-CCAGTTGTGAAGCAGATAGAATTTGATGAAT-CTGACCTTCCC-AATACAGTGGA
1 CTTCCC-AATACAGTGGAGAAGCAGATTTAA-GCCATTAGTCCT-ATC-ACCCTAA-GCAGTAGT
* * * * * * * * * * * **
71849 GAAGTAGATTTAAGCCATT--AG-TCCTATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTAC
61 GGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGG
* * *
71911 AGATTC-TGT
123 TGAATCTTAT
* * * * ** *** * * * * * * *
71920 C-ACCCTAA-CCAGTTGTGAAGCAGATAGAATTTGATGAAT-CTGACCTTCCC-AATACAGTGGA
1 CTTCCC-AATACAGTGGAGAAGCAGATTTAA-GCCATTAGTCCT-ATC-ACCCTAA-GCAGTAGT
* * * ** ** * * *
71981 GAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTACTAGAGTAGGTTGGTGGTGCAGA
61 GGAGTAGGTTGAAG--ATT-G-CAGAT-T--CT--GTCA-CCCTA-AGCA-G-TAGTGGAGCAGA
72045 TCGAAGATGGTGAATCTTAT
113 TCGAAGATGGTGAATCTTAT
* * * * ** * **
72065 CTTCCCAACACAGTAGAGAAGCAGATTTAAGCCATTAGCCCAATCTTCATAAGCAGTAGTCTAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* *
72130 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAATATGGTGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
72195 AT
131 AT
* * *
72197 CGTCCCTATACAGTGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
*** * * * * * * * * * **
72262 AGGTTGAACCCT--A-A-GCAGT-A--GT--GGAGTCGGTTGA--AAATTGCAGATTCTG--TC-
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT-AGTGGAGCAGATCGAAGATGGTGAATCT
*
72313 -ACC
130 TA-T
*** * * * * * *
72316 CTAAGCAGT--AGTGGAGCAGATCGAAGATGGTGAA-TC-TTA-TCC--T--CCCAATA-CAGTG
1 CTTCCCAATACAGTGGAG-A-A--GCAGAT--TTAAGCCATTAGTCCTATCACCCTA-AGCAGTA
* * * * * * ** * * * * **
72371 GAGAAGAAGATTTAAGCCATTAGTCCA-A-TC--AC-CCTAAGCAGTAGTGGAGCAG--TT-CGA
59 GTGGAGTAGGTTGAAG--ATT-G--CAGATTCTGTCACCCTA--AGCAGTAGTGGAGCAGATCGA
72428 AGATGGTGAATCTTAT
117 AGATGGTGAATCTTAT
* *
72444 CTTCCCAATACAATGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * ** *
72509 AGGTTGAAGATTGCAAATTCTTTCACCCTAAGCAGTAGTGGAGGGGATCGAAGATCGTGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
72574 AT
131 AT
* * * *
72576 CTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCGTTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * *
72641 AGGTTGAAGATTGCAAATTCTGTCACCATAAGCTGTAGTGGAGCAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
72706 AC
131 AT
*
72708 CTTCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAG-CTCTATCACCCTAAGCAGTAGTGGAG
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTGGAG
* **
72772 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAATGGAGTGGATCGAAGATGGTGAATCT
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
72837 TAT
130 TAT
* * * * *
72840 CTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTTCTATCCCCCTAAGCAGTACTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * *
72905 AGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAATATGATGAATCTG
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
72970 A-
131 AT
* * * *
72971 CTTTTCCAATACAATGGAGATGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
1 C-TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
* * **
73036 TAGGTTGAAGATTGCAAATTCTTTCACCCTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCT
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
73101 TAT
130 TAT
* * * * * *
73104 CTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTTCTATCTCCCTAAGCTGTACTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * *
73169 AGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAATATGATGAATCTG
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
73234 A-
131 AT
* * * *
73235 CTTTCCCAATATAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGAAGTAATGGAG
1 C-TTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAG
** * * * * *
73300 TAGGTCAAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTAGAGCAAATCGAATATGGCGAATCT
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
73365 TAT
130 TAT
* * *
73368 CTTCCTAATATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAGCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * **
73433 GGGTTAAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
73498 AT
131 AT
* * *
73500 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTGGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * * * * * * *
73565 CGGTTGAAGATTACAGATTCTGTCACCCTAAGTAGTTGTGAAGCTGATAGAATATGATGAATCTG
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
73630 AC
131 AT
* *
73632 CTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCGTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* *
73697 AGGTTGAAGATTGCAAATTCAT-TCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAATCT
66 AGGTTGAAGATTGCAGATTC-TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
73761 TAT
130 TAT
* * *
73764 CTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * *
73829 AGGTTAAAGATTGCAGATTCTGTCACCCTAAGCTGTAGTGGAGCAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
73894 AC
131 AT
* ** * * ** *
73896 CTTTCCAATATTGCGGAGTAGCAGATTTAAGCCATTTTTCCTATCACCCTAAGCAGTCGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * *
73961 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCTGTAGTGGAGCAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
74026 AC
131 AT
* ** * * ** *
74028 CTTTCCAATATTGCGGAGTAGCAGATTTAAGCCATTTTTCCTATCACCCTAAGCAGTCGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
** *
74093 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATATT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
74158 AT
131 AT
* * * * * *
74160 CTTCTCAATACAGTAGAGAAGCAAATTTAAGCCATTAGTCCTATCTCCCTAAGCCGTACTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * *
74225 AGGTTGAAGATTACAGATTCTGTAACCCTAAGCAGTAGTGAAGCAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
74290 GT
131 AT
* * * * * *
74292 CTTCTCAATACAGTAGAGAAGCAGATTTAAGTCAGTCGTCCTATCACCCTAAGCAGTAGTCGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * *
74357 AGGTTGAAGATTGCAAAATT-TTTCACCCTAAGCAGTAGTGGAACGGATCGAAGATGGTGAATCT
66 AGGTTGAAGATTGC-AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
74421 TAT
130 TAT
* * * * * *
74424 CTTCTCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTTGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * * * * *
74489 AGGTTGAGGATTGTAGATTCTGTCACCCTAAACAGTAGTGGAGAAGATCGAATATGATGAATCTT
66 AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
*
74554 AC
131 AT
* * *
74556 CTTCCCAAAACAGTGGAGAAGCAGATTTAAGCCATTAG-CTCTATCACCCTAAGCAGTAGTGAAA
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTGGAG
* *
74620 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGGAGATCGAAGATGGTGAATCT
65 TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
74685 TAT
130 TAT
* * * * *
74688 ATTCCCAATACAGTGGAGAAGCAGATTTAAACCATTAGTCCTATCTCCCTAAGTAGTGGTGGAGT
1 CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
* * *
74753 AGGTTG-AGAATTGTAGTTTCTGTAACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
66 AGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCT
74817 TAT
130 TAT
74820 CTTCCC
1 CTTCCC
74826 GTAGTGAAGG
Statistics
Matches: 3779, Mismatches: 606, Indels: 210
0.82 0.13 0.05
Matches are distributed among these distances:
116 18 0.00
117 8 0.00
118 4 0.00
119 4 0.00
120 5 0.00
121 8 0.00
122 10 0.00
123 10 0.00
124 7 0.00
125 9 0.00
126 13 0.00
127 11 0.00
128 12 0.00
129 18 0.00
130 9 0.00
131 65 0.02
132 3422 0.91
133 43 0.01
134 5 0.00
135 9 0.00
136 2 0.00
137 3 0.00
139 1 0.00
140 5 0.00
141 2 0.00
142 6 0.00
143 3 0.00
144 23 0.01
145 24 0.01
146 20 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT
AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTT
AT
Found at i:74841 original size:39 final size:39
Alignment explanation
Indices: 74787--74862 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
74777 ACCCTAAGCA
*
74787 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
1 GTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCC
*
74826 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATCTTC
1 GTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTC
74863 TCAATACAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (39 bp):
GTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCC
Found at i:74846 original size:171 final size:171
Alignment explanation
Indices: 74655--74996 Score: 551
Period size: 171 Copynumber: 2.0 Consensus size: 171
74645 ACCCTAAGCA
*
74655 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTGGAGAAGCAGATTTAAAC
1 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAAGCAGATTTAAAC
* * * ** *
74720 CATTAGTCCTATCTCCCTAAGTAGTGGTGGAGTAGGTTG-AGAATTGTAGTTTCTGTAACCCTAA
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAG-ATTACAGATTCTGTAACCCTAA
74784 GCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
130 GCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
* * *
74826 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
1 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAAGCAGATTTAAAC
*
74891 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAG
* *
74956 CGGTAGTGGAGCAGATCGAATATGGTGAATCTTATCTTCCC
131 CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
74997 AACACAGTAG
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
171 155 0.99
172 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (171 bp):
GTAGTGAAGGAGATCGAAGATGGTGAATCTTATATTCCCAATACAGTAGAGAAGCAGATTTAAAC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAG
CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC
Found at i:75083 original size:44 final size:44
Alignment explanation
Indices: 75034--75407 Score: 173
Period size: 44 Copynumber: 8.5 Consensus size: 44
75024 ATTAGTCCTA
75034 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * * ** *
75078 TCACCCTAAGCAGTGGTGGAGCAGATCT-AAGA-TGGTGAATCT-
1 TCACCCTAAGCAGTAGTGGAGTAGGT-TGAAGATTGCAGATTCTG
* * * * * * * * *
75120 T-ATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATT--AG-TCCTA
1 TCA-C-CCT-AA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTG
* * *
75166 TCACCCTAAGGAGTAGTGGAGTAGGGTGAAGATTGCAGAGTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * * *
75210 TCACCTTAAGCAGTAGTGGAGT-GGATCGAAGATGGTGAATCATATCT-
1 TCACCCTAAGCAGTAGTGGAGTAGG-TTGAAGAT--TGCA-GAT-TCTG
* ** * * * * * * * *
75257 TCTCAAT-A-CAGTAGAGAAGCAGATTTAAGCCATT--TG-TCCTA
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTG
* * *
75298 TCTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* *
75342 GCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
*
75386 TCACCCTAAGCAGTGGTGGAGT
1 TCACCCTAAGCAGTAGTGGAGT
75408 GGATCGAAGA
Statistics
Matches: 239, Mismatches: 63, Indels: 56
0.67 0.18 0.16
Matches are distributed among these distances:
40 2 0.01
41 13 0.05
42 3 0.01
43 43 0.18
44 122 0.51
45 35 0.15
46 8 0.03
47 9 0.04
48 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
Found at i:75366 original size:176 final size:176
Alignment explanation
Indices: 75167--75530 Score: 629
Period size: 176 Copynumber: 2.1 Consensus size: 176
75157 TTAGTCCTAT
* * *
75167 CACCCTAAGGAGTAGTGGAGTAGGGTGAAGATTGCAGAGTCTGTCACCTTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGGTAAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAGT
*
75232 GGATCGAAGATGGTGAATCATATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTTGTCCT
66 GGATCGAAGATGGTGAATCATATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCT
*
75297 ATCTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGG
131 ATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGG
* * *
75343 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTGGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGGTAAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAGT
*
75408 GGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCT
66 GGATCGAAGATGGTGAATCATATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCT
* *
75473 ATCTCCTTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGT
131 ATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGG
75519 CACCCTAAGCAG
1 CACCCTAAGCAG
75531 ATGTGAAGCA
Statistics
Matches: 177, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
176 177 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (176 bp):
CACCCTAAGCAGTAGTGGAGTAGGGTAAAGATTGCAGAGTCTGTCACCCTAAGCAGTAGTGGAGT
GGATCGAAGATGGTGAATCATATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCT
ATCTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGG
Found at i:75374 original size:132 final size:132
Alignment explanation
Indices: 74826--75362 Score: 869
Period size: 132 Copynumber: 4.1 Consensus size: 132
74816 TTATCTTCCC
* *
74826 GTAGTGAAGGAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
74891 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
*
74956 CG
131 CA
* * *
74958 GTAGTGGAGCAGATCGAATATGGTGAATCTTATCTTCCCAACACAGTAGAGAAAG-AGATTTAAG
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAG-AAGCAGATTTAAG
*
75022 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
65 CCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAA
75087 GCA
130 GCA
* *
75090 GTGGTGGAGCAGATCTAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
* * * * *
75155 CATTAGTCCTATCACCCTAAGGAGTAGTGGAGTAGGGTGAAGATTGCAGAGTCTGTCACCTTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
75220 CA
131 CA
** *
75222 GTAGTGGAGTGGATCGAAGATGGTGAATCATATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
1 GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
* * * *
75287 CATTTGTCCTATCTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGGCACCCTAAG
66 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
75352 CA
131 CA
75354 GTAGTGGAG
1 GTAGTGGAG
75363 TAGGTTAAAG
Statistics
Matches: 373, Mismatches: 30, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 3 0.01
132 367 0.98
133 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTAGAGAAGCAGATTTAAGC
CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAG
CA
Found at i:75432 original size:132 final size:132
Alignment explanation
Indices: 75343--101492 Score: 12376
Period size: 132 Copynumber: 197.2 Consensus size: 132
75333 CAGATTCTGG
* * *
75343 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTGGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
75408 GGATCGAAGATGGTGAATCTTATCTTCTC-AATACAGTAGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
75472 TAT
130 TAT
* * * * * *
75475 CTCCTTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAG-ATGTGAAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA-GTGGAG
* * * * *
75539 CAGATAGAATATGATGAATCTGA-CTTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGT
65 CAGATCGAAGATGGTGAATCTTATC-TTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGT
75602 CCTAT
128 CCTAT
* * * *
75607 CACCCTCAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTTTCACCCTAAGCATTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
75672 AGATCAAAGATGGTGAATCTTATCTTCTC-AACATAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
75736 TAT
130 TAT
* * *
75739 CACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAAATTCTTTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
75804 AGATCGAATATGATGAATCTTACCATCCCGAA-ACAGTGGAGAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
75867 CTAT
129 CTAT
*
75871 CAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * **
75936 AGATCGAATATGGTGAATCTTATCTTCTC-AATACAAAAGAGAAGCT-GATTTAAGCCATTAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAG-TAGATTTAAG-CATTAGTC
75999 CTAT
129 CTAT
* * * * *
76003 CTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAACCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
76068 AGATCGAATATGATGAATCTGACCTTCCC-AATACAATAGAGAAGTAGATTTAAGCCGTTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
76132 TAT
130 TAT
* * * * *
76135 CACCCTAAGCAGTAGTAGAGTAGGTTGAAGATTGCAAATTTTTTCACCCTAAGCAGTAGTGGAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
76200 GGATCGTAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
76264 AAT
130 TAT
* * * *
76267 CTCCCTAAGCAGTTGTGGAGTAGGTTGAGGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
76332 AGATCGAATATGATGAATCTTACCTTCCC-GATTCAGTGGAGAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
76395 CTAT
129 CTAT
* * * *
76399 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
76464 AGATCGAAGATAGTGAATCTTATCTTCCC-AATACAGTGGAGTAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
76528 TAA
130 TAT
* * ** * ** *
76531 CACACTAAGAAGTAGTGGAGTAGGTCAAAGATTGCGGATTCTGTCACCCTAAGTTGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
76596 AGATTGAATATGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGTAGATTTAAGCCATTACTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
76660 TAT
130 TAT
* * * * *
76663 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTACATTCTGTCACCTTAAGCAGTAATGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
76728 GGATCGAAGATGGTGAATCTTATCTTCGC-AATACAGTGGAGAAGGAGATTTAATACATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAA-GCATTAGTCC
76792 TAT
130 TAT
* * * * * * * *
76795 CTCCCTAAGCAGTAGTGAAGTAGGTTAAAGATTACAGATTCTTTCACCCTAAACAGTAGAGCAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
76860 AGATCAAAAATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGGAGATTTAGGCCATTATTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
76924 TAT
130 TAT
* * *
76927 CTCCCTAAGCAGTAGTGGAGTAGGTTG-AGAATTGTAGATTCTTTCACCCTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * *
76991 CAGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGTCATAAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
77055 CTAT
129 CTAT
* * *
77059 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTATGTCACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
77124 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAGTAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
77188 AAT
130 TAT
* * * *
77191 CTCCCTAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCATCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
77256 AGATCGAATATGGTGAATCTTATCGTCCCT-ATACAGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
77320 GT-T
130 -TAT
*
77323 CACCCTAAGCAGTAGTGGAGTAGGTTTAAGGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGC
1 CACCCTAAGC---AGT--AGT-GG----A-GTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC
* * * ** * **
77388 AGTA-T------GAT-G-A-AT-CTG-A-CCT-TC--CCAATACAGTGGAGAAGCAGATTTAAGC
55 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCC-CTA-A-TACAGTAG-AGAAGT-AG-
* *
77437 CATTT--GTC-CTATCTCCCTA-
114 -ATTTAAG-CATTA-GT-CCTAT
** * * * * **** ** ***
77456 -AGCAGTACTGGAGTAGGTTGA--AGATTGCAA-ATTTTTTTACCCTAAGT-AGTAGTGAAGCAG
1 CA-CCCTA-AGCAGTA-GTGGAGTAGGTTG-AAGA-TTGCAGATTCT--GTCA-CCCT-AAGCAG
* * * * * * ** * **
77516 -A-TCGA--ATAT-GATGAAT-CTG-A-CCT-TC--CCAATACAGTGGAGAAGTAGATTTAAGCC
57 TAGTGGAGCAGATCGAAG-ATGGTGAATCTTATCTTCC-CTA-A-TACAGTAG-AGAAGT-AG--
* *
77570 A-TT-AGTCCGTTCA-CCCTA-
114 ATTTAAG--CATT-AGTCCTAT
* * * * * * * *
77588 -A-GC--AGTAGTGGAGTAG--G-TTGAAGATTGCAAATTCTTTCACCCTGAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
77646 AGATCGAATATGATGAATCTTACCTTTCCGAA-ACAGTGGAGAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
77709 CTAT
129 CTAT
* * * *
77713 TACCCTAAGCAGTAGTGGAGTAGGTTTAAGATTACAGATTCTTTCACCCTAAGCAGTAGTGGAAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG-AG
* * * *
77778 -GGATCGAAGATGGTGAATCTTATCTT--CTAAATACAGTAGAAAAGCATATTTAAGCCATTAGT
65 CAGATCGAAGATGGTGAATCTTATCTTCCCT-AATACAGTAGAGAAGTAGATTTAAG-CATTAGT
77840 CCTAT
128 CCTAT
* * * * * * *
77845 CTCCCTAAGTAGTACTGGAGTAGGTTGAAGATTACAGTTTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
77910 TGATCGAATATGATAAATCTGACCTTCTC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
77974 TAT
130 TAT
* * * * * * *
77977 CACGCTAAGCAGTAGTAGAGTAGGTTAAAGATTGCAAATTTTTTCACCCTAAGCAGTAGTGGAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
78042 TGATCGAAGATGGTGAATATTATCTTCTC-AAGATAGTGGAGAAGCAGATTTAAACCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTT-AAGCATTAGTCC
*
78106 AAT
130 TAT
* * * *
78109 -ATCCCTAAGCAGTTGTGGAGTAGGTTGAGGATTGTAGATTCTGTCACCCTAAACAGTAGTGGAG
1 CA-CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * *
78173 CAGATCGAATATGATGAATCTTACCTTCCC-GATACAGTGGAGAAGCAGATTTAAGCCATTAG-C
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
78236 TCTAT
129 -CTAT
* * * *
78241 CGCCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
78306 AGATCGAAGATAGTGAATCCTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
78370 TAT
130 TAT
* * ** *
78373 CACACTAAGAAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-
* * * * * * * *
78438 C-GATTGAATATGGCGAATCTTATCTT-CCTAATATAATGGAGAAGTAGATTGAAGCCATTACTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
78501 CTAT
129 CTAT
* * * *
78505 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTACATTCTGTCACCTTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * ** *
78570 GGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGGGGATTTACGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
78634 TAT
130 TAT
* * * * * * * *
78637 CTCCCTAAGCATTAGTGGAGTACGTTGAAGATTACAGATTCTTTCACCCTAAACAGTAGAGCAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
78702 AGATCAAAAATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
78766 TAT
130 TAT
* *
78769 CACCCTAAGCAGTAGTGGAGTAGGATGAAGATTGCATATTCTGTCACCCTAAGCAGTAGT-GATG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-G
* * * * * * *
78833 CCGATCGAAGATGGTGAATCTTATCTTCCAT-ATATAGTGGAGAAGGAAATTTAAGTCATGAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
78897 CTAT
129 CTAT
* * * *
78901 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * ** * *
78966 AGATCGAATATGATGAATCTTATCTTCCC-AATATAGTGGAGAACCAGATTTCAGCCATTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
79030 TAT
130 TAT
*
79033 CACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
79098 GGATCGAAGATGGTGAAACTTATCTTCTC-AAGATAGTGGAGAAGAATATTTAAGCTATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC-ATTAGTCC
*
79162 AAT
130 TAT
* * * * * *
79165 CTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGTAGATTCTGTCATCCTAAACAGTAGTGCAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
79230 AGATCGAATATGGAGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
79294 TAT
130 TAT
* * * * * *
79297 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGAAGATTCTTTCACCCAAAGCAGTAGTGAAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
79362 AGATCGAAGATGGTGAATCTGACCTTCCC-AATACAGTGGAAAAGCAGATTTAAGCCATTAATCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
79426 TAT
130 TAT
* * *
79429 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTCAAATTCTTTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
** * * * * * * * *
79494 AGATCGAATTTGATGAATCTTACCTTCTC-AAGATATTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
79558 TGT
130 TAT
* * *
79561 CACCCTAAGCATTAGTGGAGTAGGTTGAAGATTGCAGATTCGGTCACCCTAAGCAATAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
** * * * *
79626 AGATCGACTATGATGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
79689 CTAT
129 CTAT
* * *
79693 CACCCTAAGCAATAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAGCCTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
79758 GGATCAAAAATGGTGAATCTTATCTTCTC-AATACAATAGAGAAGCAGATTTAAGCCAGTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
79822 TAT
130 TAT
* * * *
79825 CACCCTAAGGAGTACTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
79890 AGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGCAGATTTAAGGCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAA-GCATTAGTCC
79954 TAT
130 TAT
* * * *
79957 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGAGTGCAGATTCTG-CACACTAAGCAGAAGT-GATG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-G
* * * * *
80020 CAGATCGAAGATGGTGAAACTTATC-TCCCCAATGCAATGGAGAAGTAGATTTAAGCGATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC-ATTAGTC
*
80084 CTAA
129 CTAT
* ** *
80088 CACACTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
80153 AGATTGAATATGGCGAATCTTATCTT-CCTAATATAGTCGAGAAGCAGATTTAAGCCATTACTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
80217 TAT
130 TAT
* * * * * *
80220 CACCCTAAGCAGTAGTGGAGTAGGATAAAGATTGTACATTCTGTCACCTTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * ** *
80285 GGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGGGGATTTACGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
80349 TAT
130 TAT
* * * * * * *
80352 CTCCCTAAGCAGTAGTGGAGTACGTTGAAGATTACAGATTCTTTCACCCTAAACAGTAGAGCAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
80417 AGATCAAAAATGGTGAATCTTATTTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
80481 TAT
130 TAT
*
80484 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCATATTCTGTCACCCTAAGCAGTAGT-GATG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-G
* * * * *
80548 CAGATCGAAGATGGTGAATCTTATCTTCCC-AAGATAGTGGAGAAGGAAATTTAAGTCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
80612 CTAT
129 CTAT
* * * * *
80616 CACCCGAAGCAGTAGTGGAGTCGATTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * ** * *
80681 AGATCGAATATGATGAATCTTATCTTCCC-AATATAGTGGAGAACCAGATTTCAGCCATTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
80745 TAT
130 TAT
*
80748 CACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
80813 GGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGAATATTTAAGCTATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC-ATTAGTCC
*
80877 AAT
130 TAT
* * *
80880 CTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
80945 AGATCGAATATGGAGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
81009 TAT
130 TAT
* * * *
81012 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGAAGATTCTTTCACCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
81077 AGATCGAAGATGGTGAATCTGACCTTCCC-AATACAGTGGAAAAGCATATTTCAGCCATTAATCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
81141 TAT
130 TAT
* * * * * *
81144 TACCCTAAGTAGTAATGGAGTAGGTTGAAGATTTCAAATTCTTTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
81209 AGATCGAATATGATGAATCTTACCTTCTC-AAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
81273 TAT
130 TAT
* *
81276 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCCAAGCAGTAGTAGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
81341 AGATTGAATATGATGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCAGTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
81404 CTAT
129 CTAT
* * *
81408 CACCCTAAGCAATAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAGCCTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
81473 GGATCAAAAATGGTGAATCTTATCTTCTC-AATACAGTAGAGAAGCAGATTTAAGCCAGTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
81537 TAT
130 TAT
* * * *
81540 CACCCTAAGGAGTACTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * ** **
81605 AGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAG-ATTCTGCACCCTAAGCAGAAGT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGT-AG-A-TTTAAGCATTAGT
*
81668 --GAT
128 CCTAT
** * * * * ** ** * * ** * ** *
81671 GCAGATCGAAG-A-TGGTGAAACTTATCTCCCCAATGCAATGGAGAAGCAG--A-TTTAAGCCAT
1 -CA-CCCTAAGCAGTAGTG-GA-GTAGGT--TGAA-G-ATTGCAGATTCTGTCACCCTAAG-CAG
** * * * * * ** * * * ***
81731 TAGTCCTATCACA-CTAAGCAATAGTGGAGTCGGTTGAAGATT-GC-AGATTCTGTCACCCTAAG
57 TAGT-GGAGCAGATCGAAG--ATGGT-GAATC--TT--ATCTTCCCTA-ATACAGT-A-GAGAAG
* * ** * *
81793 CAGTAGTGGAGCA-GA-TCATAT
111 TAG-ATTTAAGCATTAGTCCTAT
*** ** * **** * ** * * * *
81814 -ATGGTGATTCTTATCTTCCCAACACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
1 CACCCT-AAGC--A--GT---AGTGGAGTAG-GTTGAAGA-TT--G-CA-GA-TTCTGTCACCCT
* * * ** * * * * * * * *
81878 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-CCCCTAA-GCAGTCGTGTAG-CGA
51 AAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGA
** *
81939 TCGAAG-ATGGTGAATCCTAT
115 TTTAAGCAT--T-AGTCCTAT
** * * * ** *
81959 C-TTCTCAAG-A-TAGTGGAGAAGCAGATTTAAGCTATT--AG-TACAATCTCCCTAAGCAGTAG
1 CACCCT-AAGCAGTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * * * * *
82018 TGGAGCAGATCGAATATGGCGCATCTTATCGTCCCT-ATATAGTGGAGAAAG-AGATTTAAGCCA
60 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAG-AAGTAGATTTAAG-CA
*
82081 TTAGTCCTGT
123 TTAGTCCTAT
* * * * * *
82091 CACCCTTAGCAGTAATGGACTAGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGTAGTGGTGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* *
82156 AGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
82220 TAT
130 TAT
** * * *
82223 CACCCTAAAAAGTAATAGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTGGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* *
82288 AGATCGAAGATGGTGAATCTTATCTT-CC-AATTACAGTGGAGAAGCAGATTTAACGCATTAGT-
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAA-TACAGTAGAGAAGTAGATTTAA-GCATTAGTC
*
82350 GTAGT
129 CTA-T
*** * ** * * * *
82355 -AGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGTAGTAGGTTGAAGATTGCAGATTC
1 CACCCT--A-A--GC--A----GT-A--GT--GGAGTAG-GTTGAAGATTGCAGAT-------TC
* * *
82419 TGTCACCCTAAGCAGTCGTGGAGTAGATCGAAGATGGTGAATCTTACCTTCCC-AATACAGTAGA
42 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGA
* *
82483 AAAGCAGATTTAAGCCATTAG-CTCTAT
107 GAAGTAGATTTAAG-CATTAGTC-CTAT
* * * *
82510 CACCCTAAGCAGTAGTTGAGTAGGTTAAAGATTGCAGATTTTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
82575 AGATCAAAGATGGTGAATCTTATCTTTCC-AATACAGTGGAAAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
82639 TAT
130 TAT
* * *
82642 CACTCTAAGCAGTAGTGGAGTAGGTTAAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
82707 AGATCAAAGATGGTGAATCTTATCTTTCC-AATACAGTGGAAAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
82771 TAT
130 TAT
* * * *
82774 CACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATTCTTTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
82839 GGATCGAAGATTGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
82903 AAT
130 TAT
* *
82906 CTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * ** ** * * *
82971 AGATCGAATATGATGAATCTTAGCTTCCC-AATATTGCGGAGCAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
83035 TAT
130 TAT
* *
83038 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGAAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* ** * * * * * ** * * * *
83103 AGGTTAAAGAT--TGCAGATTTTTTC-ACCCTAA-ACAATAGTGGTGCAGATCGAATATG-ATGA
66 AGATCGAAGATGGTG-A-ATCTTATCTTCCCTAATACAGTAGAGAAGTAGAT---TTAAGCATTA
* *
83163 ATCTTAT
126 GTCCTAT
* * * * * * * * * *
83170 CTTCCC-AATACAGTGGAGAAGAAGATTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTG
1 C-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * * * * * * * ** **
83231 GAGTAGGTTGAAGATTGTAAATTCTT-TC-ACCCTAA-GCAGTAGTGGAGCGGATCGAAG-ATTG
62 GAGCAGATCGAAGATGGTGAA-TCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCA-T-
* *
83292 TGAATCTTAT
124 T-AGTCCTAT
** * * * ** *
83302 C-TTCTCAAG-A-TAGTGGAGAAGTAGATTTAAGCCATT--AG-TCCAATCTCCCTAAGCAGTAG
1 CACCCT-AAGCAGTAGT-G-G-AGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * * * * * * * * * **
83361 TGGAGTAGGTTGAAGAT--TGCAGATTTTGTC-ACCCTAA-GCAGTAGTGGAGCAGATCGAAG-A
60 TGGAGCAGATCGAAGATGGTG-A-ATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCA
* *
83421 TGGTGAATCTTAT
123 T--T-AGTCCTAT
** * * * * * *
83434 C-TTCTCAAG-A-TTGTGGAGAAGCAGATTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAC
1 CACCCT-AAGCAGTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * * *** * * * * * * * *
83493 TGGAGTAGGTTGAAGATTACAGATTC-TGTC-ACCCTAA-GCAGTAGTGAAGCAGATCAAATATG
60 TGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGAT---TTAAG
* * *
83555 -ATGAATCTTAT
121 CATTAGTCCTAT
** * * * * * ** * * * * *
83566 C-TTCTCAATACTGTAGAGAAGAATATTTAAGCCAGT-C-G-TCCTATCACCCAAAGCAGTAGTG
1 CACCCT-AA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * ** * ** * * * * * **
83627 GAGTAGGTTAAAGATTGCAAATTTTTTC-ACCCTAA-GCAGTAGTGGAACG--GATCGAAG-ATG
62 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAA-GTAGATTTAAGCAT-
* **
83687 GTGAATTTTAT
124 -T-AGTCCTAT
** * * * * * *
83698 C-TTCTCAAG-A-TAATGGAGAAGCAGATTTAAGCCATT--AG--TCTAATCTCCCTAAGCAGTT
1 CACCCT-AAGCAGTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCT-GTCACCCTAAGCAGTA
* * * * * * * * *
83756 GTGGAGTAG-GCTGAGGAT--TGCAGATCCTGTC-ACCCTAA-ACAGTAGTGTAGTAGATCGAAT
59 GTGGAGCAGATC-GAAGATGGTG-A-ATCTTATCTTCCCTAATACAGTAGAGAAGTAGAT---TT
* * * * *
83816 ATG-ATGAATCTTAC
118 AAGCATTAGTCCTAT
** * * * * * *
83830 CTTTCC-AATACAGTAG-GGAAGCAGATTTAAGCCATT--AGCA--CTATCACCCTAAGGAGTAG
1 C-ACCCTAA-GCAGTAGTGG-AGTAGGTTGAAG--ATTGCAG-ATTCTGTCACCCTAAGCAGTAG
* * * * * ** * * * * * **
83889 TGAAGTAGGTTGAAGATTGCAAAT-TCTGTC-ACCCTAA-GCAGTAGTGAAGAAGATCGAAG-AT
60 TGGAGCAGATCGAAGATGGTGAATCT-TATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
83950 GGTGAATCTTAT
124 --T-AGTCCTAT
** * * * * * *
83962 C-TTCTCAAG-A-TTGTGGAGAAGCAGATTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAC
1 CACCCT-AAGCAGTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * ** ** * * * ** * * * * *
84021 TGGAGTAGGTTAAAGATTGCAGATTC-TGTC-ACTGTAAGTAGTAGTAGAGCAGATCGAATGT-G
60 TGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAA-TA-CAGTAGAGAAG-TAG-ATTTAA
*
84083 GCGA--A-TCTTAT
120 GC-ATTAGTCCTAT
** ** ** * * ** * * * *
84094 CTTCCTAATATAGTACAGAAGCAAATTTAAGCCATT--AG-TCCTATCAGCCTAAGCAGTAGTGG
1 CACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
* * ** ** * * * * * * **
84156 AGTAGGTTAAAGATTGCAGATTC-TGTC-ACCTTAA-GCAGTAGTAG-AGTGGATCGAAG-ATGG
63 AGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGATTTAAGCAT--
* *
84216 TGAATCTTAT
124 T-AGTCCTAT
* * * * * * * * * * *
84226 CGTCCC-AATACAGTGGAGAAGGAGATTTAAGCCATT--AG-TCCTATCTCCCTAAGCAGTAGTG
1 C-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * *** * * * * * **
84287 GAGTAGGTTGAAGATTACAGATTCTT-TC-ACCCTAA-ACAGTAGAGCAGCAGA-TCAAAAATGG
62 GAGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT--
* *
84348 TGAATCTTAT
124 T-AGTCCTAT
* * * * * * * * * *
84358 CTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTG
1 C-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * * * * * * * ** **
84419 GAGTAGGAT-GAAGAT--TGCATATTCTGTCACCCTAA-GCAGTAGTGATGCCGATCGAAG-ATG
62 GAGCA-GATCGAAGATGGTGAATCTTATCT-TCCCTAATACAGTAGAGAAGTAGATTTAAGCAT-
* *
84479 GTGAATCTTAT
124 -T-AGTCCTAT
** * * * * * *
84490 CTTCC-ATA-TA-TAGTGGAGAAGGAAATTTAAGTCATT--AG-TCCTATCACCCTGAGCAGTAG
1 CACCCTA-AGCAGTAGTGGAGTAGG---TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * *** * * * ** * * *
84549 TGGAGTC-GGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGAGTGGAGAAGCA
60 TGGAG-CAGATCGAAGA-TGGTGAATCT-T-A-TCT--TCCCTAAT--A-C--AGTAGAGAAGTA
*
84613 GATTTAAGCCATTAGTCTTAT
113 GATTTAAG-CATTAGTCCTAT
* * * * * * ** * ***
84634 CTCCGTAAGCAGAAGTGGAAAG-ATGG-TGAATCTTATCTTATCAGAGTAGGTTGAAGATTACAG
1 CACCCTAAGCAGTAGTGG--AGTA-GGTTGAA---GA--TT-GCAGATTCTG-T-CACCCTA-AG
* ** ** * * * * * ** ** *** **
84697 -ATTCTTTCACCCTA-AGCAGTAG-TGGAGCGGATCGAAGATGGT-GAAAATTATCTTCTCA-AG
54 CAGTAGTGGA-GC-AGATC-GAAGAT-G-GTGAATC--TTATCTTCCCTAA-TA-C-AGT-AGAG
* * *
84757 ATAGTGGA--GAAGAATATTTAAG--CTAT
108 A-AGTAGATTTAAG--CA-TT-AGTCCTAT
** * ** * * * *
84783 TTCTCC-AATC--TCCCTGAGCAGTA-GTGGAGTCGGTTGAAGATTGCAGATTTTGTCACCCTAA
1 CAC-CCTAAGCAGT-AGTG-G-AGTAGGTTGA--AGATTGCAGATT-C------TGTCACCCTAA
* * * * * *
84844 ACAGTAGTGGAGCAGATCGAATATGGAGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTT
53 GCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTT
84908 AAGCCATTAGTCCTAT
118 AAG-CATTAGTCCTAT
* * * * *
84924 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGAAGATTCTTTCACCCTAAGCAGTAGTGAAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
84989 AGATCGAAGATGGTGAATCTGACCTTCCC-AATACAGTGGAAAAGCAGATTTAAGCCATTAATCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
85053 TAT
130 TAT
* * *
85056 AACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTTTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * * *
85121 AGATCGAATATGATGAATCTTACCTTCTC-AAGATAGTGGAGAAGCAGATTTTAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
85185 TAT
130 TAT
* * * *
85188 CACCCTAAGCAATAGTGGAGTATGTTGAAGATTGTAGATTCTGTCACCCTAAGGAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
85253 AGATCGAATATGATGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCAGTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
85317 TAT
130 TAT
* * * *
85320 CACCCTAACCAGTACTGGAGTCGGTTGAAGATTACAGATTCTGTCA-CCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
85384 AGATCGAAGATGGTGAATCTTATCTTCTC-AATACAGTAGAGAAGCAGATTTAAGCCAGTCGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
85448 TAT
130 TAT
* * * *
85451 CACCCTAACCAGTACTGGAGTCGGTTGAAGATTACAGATTCTGTCA-CCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
85515 AGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGCT-GATTTAACGCATTACTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAG-TAGATTTAA-GCATTAGTC
85578 CTAT
129 CTAT
* *
85582 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCA-CCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
85646 AGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGCT-GATTTAAGGCATTAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAG-TAGATTTAA-GCATTAGTC
85709 CTAT
129 CTAT
** * *
85713 CACCCTAAGCAGTAGTGGAGTCA-GTTGAAGGGTGCAAATTCTG-CACCCTAAGCAGAAG-GGAT
1 CACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-
* * * * * * *
85775 GCAGATCGAAGATGGTGAAACTTCTC-TCCCCAATGCAATGGAGAAGCAGATTTAAGCCATTAGT
64 GCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGT
85839 CCTAT
128 CCTAT
* *
85844 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCTGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
85909 AGATCGAAGATGGTGATTCTTATCTTCCC-AACACAGTGGAGAAGCAGATTTAAGCTATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC-ATTAGTCC
85973 TAT
130 TAT
*
85976 CACCCTAAGCAGTTGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
86041 AGATCGAATATGGTGCATCTTATCGTCCCT-ATACAGT-G-GAAG-AGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
86102 AAT
130 TAT
* * * *
86105 CACCCTTAGCAGTAATGGAGTAGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGTAGTGGTGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
86170 AGATCGAAGATGGTGAATCTTATCTTCCC-AATACAATGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
86234 TAT
130 TAT
*
86237 CACCCTAAGAAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
86302 AGATCGAAGATGGTGAATCTTATCTT-CCAAATATAGTGGAGAAGCAGATTTAACGCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAA-GCATTAGTCC
*
86366 AAT
130 TAT
* * * *
86369 CACCCTAAGCAGTAGTGTAGTAGGTTGAAGATTGCAGATTCTATCACCCTAAGCAGTCGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
86434 AGATCGAAGATGGTGAATCTTACCTTCCC-AATACAGTGGAAAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
86497 CTAT
129 CTAT
* * * * *
86501 CACCCTAAGCAGTAGTTGAGTAGGTTAAAGATAGCAGATTTTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
86566 AGATCGAATATGATGAATCTTATCTTCCC-AATACAGTAGAGAAGCAGATTTAAGCCATTAGTCT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
86630 TAT
130 TAT
* * * *
86633 CTCCGTAAGCAGAAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
86698 AGATCAAAGATGGTGAATCTTATCTTATCACCCTAA-GCAGTAGTGGAGTTGGTTGAAG-ATTGC
66 AGATCGAAGATGGTGAATCTTATC-T-T--CCCTAATACAGTAGAGAAGTAGATTTAAGCATT--
* * *
86761 AAATTCTTT
125 -AGTCCTAT
* * ** * * ** *
86770 CACCCTAAGCAGTAGTGGAG-CGGATCGAAGA-TGGTGAATCTTATCTTCTTAAG-A-TAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTC-TGTCACCCTAAGCAGTAGT-G-
** * ** * * *
86831 GAAGCAGATTTAAGCCAT--T-AGTCCAATC-TCCC-AA-AGCAGTAGAGGAGTAGGTTGAAG-A
62 G-AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATA-CAGTAGAGAAGTAGATTTAAGCA
* *
86889 TTGCAGATTCTGT
123 TT--AG-TCCTAT
* * * * ** ** * *
86902 CACCCTAAACAGTAGTGGAGCA-GATCAA-ATATG-ATGATTCTAACTTTCC-AA-AAATACAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCA-GATTCTGTC-ACCCTAAGCAGT--AGT
** ** * * * * * * * **
86962 GGAGAGGCAGATTTAAG-TCAT-TAGCTCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGCAG-
61 -G-GA-GCAGATCGAAGATGGTGAATCT-TATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC
* *
87022 ATTGCAGATTCTGT
122 ATT--AG-TCCTAT
* * * * ** ** * *
87036 CACCCTAAGCAGTAGTGGAGCA-GATCAA-ATATG-ATGATTCTAACTTTCCAAAAATACAGTGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCA-GATTCT--GTCACC-CTAA-GCAGTAG
* * ** ** * * * * * * * *
87098 AGAAGCAGATTTAAG-TCAT-TAGCTCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG-AT
60 TGGAGCAGATCGAAGATGGTGAATCT-TATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
87158 TACAGATTCTGT
124 T--AG-TCCTAT
* * * ** * * * * * * *
87170 CACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AATACAATAGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTGG
* **** * ** * * * * * *
87233 AGCAGA-CTTAAGCCACT-AGTCCCATC-ACCCTAAGA-AGTAGTGGAGTAGGTTGAAG-ATTAC
63 AGCAGATC-GAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT--
* *
87293 AGATTCTGT
125 AG-TCCTAT
* * * ** * * * **
87302 CACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCT-T-ATCTTCGAAATA-TAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA-C-CCTAAGCAGTAGT-G-
** * * * * * * * *
87363 GAAGCAGATTTAACGCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGTAGTAGGTTGAAG-AT
62 G-AGCAGATCGAA-G-ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
87422 TGAAGATTCTGT
124 T--AG-TCCTAT
* * * * * * * * * * *
87434 CACCCTAAGCAGTAGTGGAGCAGATCGAATATAG-TGAATCT-TAATGTCCCTATA-CATTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA---CCCTA-AGCAGTAGTG
* * ** * * * * * * * *
87496 AAGGAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG-ATT
62 GAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT
* *
87555 GCAGATTCTGT
125 --AG-TCCTAT
*** * * ** * * * *
87566 CATTTTAAGCCGTAGTGGAGT-GGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAACACAGTAGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AA-GCAGTAGT
* ** * * * * * * **
87627 GAAGCAGATTTAAGTCAT-TTG--TCCTATC-TCCCTAA-GCAGTAGTGGAGTAGGTCAAAG-AT
61 GGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* * *
87686 TGCAAATTCTGT
124 T---AGTCCTAT
* * * * * * * * * ** * * * *
87698 CACCGTAAGTAGTAGTAGAGCAGATCGAATATGGC-GAATCTGACTTTCCC-AATACAGTGGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG--TCACCCTAA-GCAGTAGTGG
* ** * * * * * * * **
87761 AGTAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAAGA-A-TAGTGCAGTAGGTCAAAG-ATTG
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT-
* *
87819 CAGATTCTGT
125 -AG-TCCTAT
* * * * * * * ** *
87829 CACCCTAAGCAGTAGTGGAGCAGATCGAATA-T-CATGAATCT-T-ACCTTCCCAATACAGCGGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCA-C--CCTAA-GCAGTAGT
* ** * * ** * * * * *
87890 GAAGCAGATTTAAGCCAT--T-AGTCCTATC-AACCTAA-GCAGTAGTGGAGTAG-GTTAAGAAT
61 GGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* * *
87949 TGCATATTCTGT
124 T--A-GTCCTAT
*
87961 CACCCTAAGCAGTAGTGGAGTAGGTT-AAGAATTGCATATTCTGTCACCCTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * *
88025 CAGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGTCATAAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
88089 CTAT
129 CTAT
* * * *
88093 CATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTCAGCTGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
88158 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAGTAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
88222 AAT
130 TAT
* * *
88225 CTCCCTAAACAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
88290 AGATAGAATATAGTGAATCTTATCGTCCCT-ATACAGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
88354 TAT
130 TAT
* * * *
88357 CACCCTAAGCAGTAGTGGAGTAGGTTGAACATTGCAGATTCTGTCATCTTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
88422 GGATCGAAGATGGTGAATCTTATCTTCTC-AATACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
88486 TAT
130 TAT
* * * *
88489 CTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
88554 AGATCGAATATGATGAATCTGTCTTATCTTCTC-AATACAGTAGAGAAGCAGATTTAAGCCATTT
66 AGATCGAAGATGGTGAA----TCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTA
88618 GTCCTAT
126 GTCCTAT
* * * * *
88625 CTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGTAG-AGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
88689 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTGG
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGT--
**
88753 AGTAGGTT
128 CCTA---T
* ** * * ** * * * * * * * ** *
88761 GAAGATTGCAAATTCTTTCACCCTAAGCACTA-GTGGAGGGATCGAAGATGGTGAATCTTATCTT
1 ---CA-CCCTAA-GCAGT-A--GT--GGAGTAGGTTGA-AGATTGCAGATTCTG--TC--A-C-C
* * * * * * *
88825 CTCAAG-A-TAGTGGAGAAGCAGATTGAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGCAGTG
49 CT-AAGCAGTAGT-G-G-AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAG
** * * * *
88883 GTGTAGGTTAAAG-ATTGCAGATTCTGT
108 AAGTAGATTTAAGCATT--AG-TCCTAT
* * * * * * *** *
88910 CACCCTGAGCAGTAGTGGAGCAGATCGAATA-TG-ATGAATCT-T-A-CCTTCCCGATATAGTGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCACCCTAAGC-A-GTAGTGG
** * * * * * * * * * * * *
88970 AAAAGCAGATTTAAGCT-AT-TAGCTCTATC-ACCTTAA-GCAGTAGTGGAGTGGGTTGAAG-AT
63 ---AGCAGATCGAAGATGGTGAATCT-TATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
89030 TGCAGATTCTGT
124 T--AG-TCCTAT
* * * ** * * * *
89042 CACCGTAAGTAGTAGTGGAGT-GGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAATACAGTAGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AA-GCAGTAGT
* * *** * ** ** * * *
89103 GAAGTAGATTTCAGCCAT--T-AGTCCAATC-TCCCTAAGT--AGTACTGGAGTAGGTTGAAG-A
61 GGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAA-TACAGTAGAGAAGTAGATTTAAGCA
* *
89161 TTACAGATTCTGT
123 TT--AG-TCCTAT
* ** * *
89174 CACCCTAAGCAGTA----AGT-GGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAAG-A-TAGTG
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AAGCAGTAGT-
* ** * * * * * * * *
89229 GAGAAGTAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG-
61 G-G-AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGC
* ** *
89288 ATTGCAAATTTTTT
122 ATT---AGTCCTAT
* * ** * *
89302 CACCCTAAGTAGTAGTGGA--ACGGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAAG-A-TAGT
1 CACCCTAAGCAGTAGTGGAGTA-GG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AAGCAGTAGT
* ** *** * * ** * * * * * * *
89360 GGAGAAGTAGATTTAAG-CCCTTAGTCCAATC-TCCCTAA-GCAGTTGTGGAGTAG-GTTGAGGA
61 -G-G-AGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCA
* *
89421 TTGCAGATTCTGT
123 TT--AG-TCCTAT
* * * * * * * * *
89434 CACCCTAAACAGTAGTGGAGCAGATTGAATA-TG-ATGAATCT-T-ACCTTCCCAATACAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCA-C--CCTAA-GCAGTAGT
* * ** * * * * * *
89495 GAAGCAAATTTAAGCCAT--T--AGCTCTATC-ACCCTAA-GCAGTAGTCG-AGTAGGTTGAAG-
61 GGAGCAGATCGAAG--ATGGTGAATCT-TATCTTCCCTAATACAGTAG-AGAAGTAGATTTAAGC
* *
89552 ATTGCAGATTCTGT
122 ATT--AG-TCCTAT
* * * * * * * * *
89566 CACCCTAAGCAGTAGAT-AAGGAGATCGAAAAGAGTG-A-A-TCTTATCTTCCC-AATACAGTGG
1 CACCCTAAGCAGTAG-TGGAGTAGGTTG--AAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAG
* * ** * * * * * * * * **
89626 AGAAGCAGATTTAAGCCAT--T-AGTCCTATC-ACACTAAGA-AGTAGTGGAGTAGGTCAAAG-A
60 TGGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCA
* * *
89685 TTGCAAATTCTGT
123 TT---AGTCCTAT
* * * * * * * ** *
89698 CACCCTAAGTAGTAGTGGAGCAGATTGAATATGGC-GAATCTTATCTTCCTAA-TA-TAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTCACCCTAAGCAGTAGT-G-G
** * * * * * * * *
89760 AAGCAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAAGT--AGTAGTGGAGTAGGTTGAA-AAT
63 -AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAA-TACAGTAGAGAAGTAGATTTAAGCAT
*
89818 T-GTACATTCTGT
124 TAGT-C---CTAT
* * * ** * * * * * * * *
89830 CACCTTAAGCAGTACTGGAGT-GGATCGAAGA-TGGTGAATCTTATCTCCCCAATACAGTGGAGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTC-TGTCACCCTAA-GCAGTAGTGG
* ** * * * * * * * *
89893 AGGAGATTTAAGCCAT--T-AGTCCTATC-TCCCTAA-GCAGTAGTGGAGTAGGTTAAAGACTGC
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-C--A
* *
89953 TTA-TTCTGT
123 TTAGTCCTAT
* * * * ** * * * * * * * *
89962 CACCCTAAGCAGTAAT-GATGCAGATCGAAGA-TGGTGAATCTTATCTCCCCAATACAGTGGAGA
1 CACCCTAAGCAGTAGTGGA-GTAGGTTGAAGATTGCAGATTC-TGTCACCCTAA-GCAGTAGTGG
* ** * * * * * * * * *
90025 AGGAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTAAAGACTGC
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-C--A
* *
90085 TTA-TTCTGT
123 TTAGTCCTAT
* * * * ** * * *
90094 CACCCTAAGCAGTAAT-GATGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AAG-A-TAGTGG
1 CACCCTAAGCAGTAGTGGA-GTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAAGCAGTAGTGG
* * * * * * * *
90154 AG-A-A-GGAA-AT--TTAAGTCATTAGTCCATCACCCTAA-GCAGTAGTGGAGTCGGA-TGAAG
63 AGCAGATCGAAGATGGTGAA-TC-TTA-T-C-T-TCCCTAATACAGTAGAGAAGT-AGATTTAAG
* *
90211 -ATTACAGATTCTGT
121 CATT--AG-TCCTAT
* * ** * * * * * * *
90225 CACCCTAAACAATAGTGGAACAGATCGAATA-TG-ATGAATCTTATCTTCCC-AA-TA-TAGTGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTC-TGTC-ACCCTAAGCAGTAGTGG
* * * ** * * * * * * *
90285 AGAAG-TAGATTTCAGCTATTCG--TCCTATC-ACCCTAA-GCAGTAGTGGAG-ACAGTTGAAG-
63 AGCAGATCGA----AGATGGT-GAATCTTATCTTCCCTAATACAGTAGAGAAGTAGA-TTTAAGC
* *
90343 ATTGCAGATTCTGT
122 ATT--AG-TCCTAT
* * * * * * ** * * * * * * * *
90357 GACCCTAAGGACTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AACACAATGGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTGG
* ** * ** * * * * * * * *
90420 AGTAGATTTAAGCCAT--T-AGTCCAATC-TCTCTAA-GCAGTTGTGGAGTAG-GTTGAGGATTG
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT-
* *
90479 CAGATTCTGT
125 -AG-TCCTAT
* * * * * * * * *
90489 CACCCTAAACAGTAGTGGAGAAGATTGAATA-TG-ATGAATCT-T-ACCTTTCCAATACAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCACC---CTAA-GCAGTAGT
* ** * * * * * * *
90550 GAAGCAGATTTAAGCCAT--T--AGCTCTATC-ACACTAA-GCAGTAGTGAAGTAGGTTGAAG-A
61 GGAGCAGATCGAAG--ATGGTGAATCT-TATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCA
* *
90608 TTGCAGATTCTGT
123 TT--AG-TCCTAT
* * * * * * ** * * * * * *
90621 CAACCTAAGCAGTGGTGAAGGAGATCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTGG
* ** * * * * * * * **
90684 AGAAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTCAAAG-ATTG
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT-
* *
90743 CAGATTCTGT
125 -AG-TCCTAT
* * * ** * * * * ** *
90753 CACCCTAAGTAGTACTGGAGCAAATCT-AATATGGC-GAATCTTATCTTCCTAA-TA-TAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGGT-TGAAGATTGCAGATTC-TGTCACCCTAAGCAGTAGT-G-
** ** ** * * * * *
90814 GAAGCAGATTTAAGCCAT--T-AGCCCAATC-TCCATAA-ACAGTAGTGGAGTAGGTTGAAG-AT
62 G-AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* * *
90873 TGCGTATTCTGT
124 T-AG--TCCTAT
* * * * * ** * * * * * *
90885 CACCCTAAGCCGTAGTGGAGCAGATCGAATA-TGGTGAATCTTATCGTCCCTATA-CAGTGGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTA-AGCAGTAGTGG
* *** * * * * * * *
90948 AGGAGATTTTAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGAAGTAGGTTGAAG-ATTG
63 AGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT-
* *
91007 CAGATTCTGT
125 -AG-TCCTAT
* * * * ** * * *
91017 CACCTTAAGCAGTAGTAGAAT-GGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAAGACAGTAGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AAG-CAGTAGT
* ** * * * ** * * *
91078 GAAGCAGATTTAAGCCAT-TTG--TCCTATC-TCCCTAA-GCAGTACTGGAGTAGGTTGAAG-AT
61 GGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
91137 TACAGATTCTGT
124 T--AG-TCCTAT
* * * * * * * * * * *
91149 CACCCTAAGCAGTAGTGAAGCAGATCGAATA-TG-ATGAATCTGAC-CTTCCCAATACAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCAC--CCTAA-GCAGTAGTG
* * ** * * * * * * * *
91211 AAGGAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTAGGTTGAAG-ATT
62 GAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT
* *
91270 GCAGATTCTGT
125 --AG-TCCTAT
* * * ** * * *
91281 CACCTTAAGCAGTAGTAGAGT-GGATCGAAGA-TGGTGAATCT-T-ATCTTCTCAAGACAGTAGA
1 CACCCTAAGCAGTAGTGGAGTAGG-TTGAAGATTGCAGATTCTGTCA-C-CCT-AAG-CAGTAGT
* ** * * * * * ** * * *
91342 GAAGCAGATTTAAGCCAT-TTG--TCCTATC-TACGTAA-GCAGTACTGGAGTAGGTTGAAG-AT
61 GGAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
91401 TACAGATTCTGT
124 T--AG-TCCTAT
* * * * * * * * * * *
91413 CATCCTAAGCAGTAGTGAAGCAGATCGAATA-TG-ATGA-TCTGAC-CTTCCCAATACAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCAC--CCTAA-GCAGTAGTG
* * * ** * * * * * * * * *
91474 AAGTACATTTAAGCCAT--TCG--TCCTATC-ACCCTAA-GCAGTTGTGGAGTCGGTTGAAG-AT
62 GAGCAGATCGAAG--ATGGT-GAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
91532 TGCAGATTCTTT
124 T--AG-TCCTAT
* * * * * ** * * * ** * *
91544 CACCCTATGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATATTTACAAT-A-CAGTGGAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT--TGCAGATTCT-GTCACCCTAAGCAGTAGTGG
* * * * * * * * *
91607 AGCAGAT-GTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGGAGGTTGAAG-ATT
63 AGCAGATCG-AAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT
*
91665 GCAGATTCC-GT
125 --AG--TCCTAT
* * * * ** * * ** * * *
91676 CACCCTAAGCAATAGTGGAG-CGAATCGAAGA-TGGTGAATCTTATCTTTCC-AATACAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAG-GTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTG
* * ** * * * * * * * * *
91738 AAGGAGATTTAAGCCAT--T-AGTCCTATC-ACCCTAA-GCAGTAGTGGAGTCGGTTGAAG-ATT
62 GAGCAGATCGAAG--ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT
* *
91797 GCAGATTCTGT
125 --AG-TCCTAT
* * * * ** * * * *
91808 CACCCTATGCAGTAGT-AATGCAGATCAAAGATGGTG-A-ATTTTATCTTCCC-AATACAGTAG-
1 CACCCTAAGCAGTAGTGGA-GTAGGTTGAAGAT--TGCAGATTCTGTC-ACCCTAA-GCAGTAGT
* * ** ** * * * * * * * *
91868 AGATGCAAATTTAAG-TCATTAGTCCTATC-ACCC-AA-AGCAGTAGTGGAGTAGGTTGAAG-AT
61 GGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCTAATA-CAGTAGAGAAGTAGATTTAAGCAT
* *
91928 TGCAGATTCTGT
124 T--AG-TCCTAT
* * * * * * ** *
91940 CACCCTAACCAGTAGTGGAGCAGATCGAAGATAG-AGAATCTGATC-TTCTCAA-TA-TAGTGGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG-TCACCCT-AAGCAGTAGT-G-
** * * * * * * * * * *
92001 GAAGCAGATTTAAGCTAGTCG--TCCTATC-ACCCTAA-CCAGTAGTGGAGTCGGTTGAAG-ATT
62 G-AGCAGATCGAAGATGGT-GAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATT
* *
92061 GCAGATTCTGT
125 --AG-TCCTAT
* *
92072 CACCCTAACCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAATG-AGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA-GCAGTAGTGGAG
* * * *
92136 CAGATCGAAGAAGGTGAATCTTATCTTCCC-AACACAATGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
*
92200 CAAT
129 CTAT
* * *
92204 CTCCCTAAGCAGTTGTGGAGTAGGTT-AAGGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAA-GATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * * *
92268 AAGATTGAATATGATGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAG-C
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
92331 TCTAT
129 -CTAT
* * * * *
92336 CACACTAAGCAGTAGTGAAGTAGGTTGAAGATTGCAGATTCTGTCAACCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
*
92401 AGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTAGAGAAGAAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
92465 TAT
130 TAT
** *
92468 CACCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * *
92533 AAATGGAATATGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
92597 AAT
130 TAT
* * * * * *
92600 CTCCATAAACAGTAGTGGTGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
92665 AGACCGAAGATAGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
92729 TAT
130 TAT
* * * * *
92732 CTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGCAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
92797 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
92861 TAT
130 TAT
* * * *
92864 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
92929 GGATCGATGATGGTGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTATGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
92993 TAT
130 TAT
** * * * *
92996 CACCCTAAGCAGTAGCCGAGTAGGTTGAAGATTGTAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
93061 GGATCGATGATGGTGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTATGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
93125 TAT
130 TAT
* * * * *
93128 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGGTTGCAGATGCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
93193 AGACCGAAGATAGTGAATCTTATCTTCCC-AATACAGT-GCAGAAGCAGATTTAAGAAATTAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGATTTAAG-CATTAGTC
93256 CTAT
129 CTAT
* * ** * * *
93260 CACACTAAGCAATAGTGGAGTAGGTCAAAGACTGCAGATTCTGTCACCCTAAGTAGTAGTGGAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
93325 AGATCGAATATGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
93389 TAT
130 TAT
*
93392 CACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
93457 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
93521 TAT
130 TAT
* * *
93524 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
93589 GGATCGATGATGGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
93653 TAT
130 TAT
* * * * *
93656 CTA-CCTAAGCAGCACTGGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAG
1 C-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * *
93720 CAGATCGAATATGATGAATCTGACCTTTCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
93784 CTAT
129 CTAT
* * *
93788 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
93853 AGACCGAAGATAGTGAATCTTATCTTCCC-AATACAGT-GCAGAAGCAGATTTAAGAAATTAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGATTTAAG-CATTAGTC
93916 CTAT
129 CTAT
* * ** * * *
93920 CACACTAAGCAATAGTGGAGTAGGTCAAAGACTGCAGATTCTGTCACCCTAAGTAGTAGTGGAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
93985 AGATCGAATATGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
94049 TAT
130 TAT
* * * * *
94052 CTA-CCTAAGCAGCACTGGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAG
1 C-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * *
94116 CAGATCGAATATGATGAATCTGACCTTTCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
94180 CTAT
129 CTAT
* * *
94184 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
94249 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAATAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
94313 AAT
130 TAT
* * * * *
94316 CTCCATAA-AAGTAGTGGAGTAGGTTGAAGATTGCAAATTCCGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
94380 AGATCGAATATGGTGAATCTTATCGTCCCT-ATACTGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
94444 TAT
130 TAT
* * *
94447 CATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCCGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
94512 AGATCGAATATGGTGAATCTTATCGTCCCT-ATACTGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
94576 TAT
130 TAT
* * * * *
94579 CATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGAAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
94644 GGATCGAAGATGGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
94708 TAT
130 TAT
* * * ** *
94711 CTCCCTAAGCAGTACTAGAGTAGGTTGAAGATAACAGATTCTGTCACCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * **
94776 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGGCGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
94840 TAT
130 TAT
* * *
94843 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
94908 GGATTGAATG-TGGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTC
66 AGATCGAA-GATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
94971 CTAT
129 CTAT
* * * * *
94975 CTCCCTAAGCAGTACT-GAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
95039 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
95103 TAT
130 TAT
* * * *
95106 CACCCTAAGCAGCAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
95171 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAGTAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
95235 AAT
130 TAT
* * * * * *
95238 CTCCATAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTCCGTCACCCTAAGCAGCAGTGGAGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
95303 AGATCGAATATGGTGAATCTTATCGTCCCT-ATACAGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
95367 TAT
130 TAT
* * *
95370 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
95435 GGATCGAAGATGGTCAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTAGT-C
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
95498 TAAT
130 T-AT
* * * * *
95502 CTCCCTAAGCAGTTGTGGAGTACGTTGAGGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
95567 AGATCGAATATGATAAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAG-CT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC-
95630 CTAT
129 CTAT
* * *
95634 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
95699 AGACCGAAGATAGTGAATCTTATTTTTCC-AATACAGT-GTAGAAGCAGATTTAAGCCATTAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGATTTAAG-CATTAGTC
95762 CTAT
129 CTAT
* * ** * * *
95766 CACACTAAGCAATAGTGGAGTAGGTCAAAGACTGCAGATTCTGTCACCCTAAGTAGTAGTGGAAC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
** * * * *
95831 AGATCGAATCTGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
95895 TAT
130 TAT
* * *
95898 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
95963 GGATCGAAGATGGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCAATT-GTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-C-ATTAGTC
96026 CTAT
129 CTAT
* * * * *
96030 CTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCACCGTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
96095 AGATCGAATATGATGAACCTGACCTTCCC-AATACAGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
96159 TAT
130 TAT
* * *
96162 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
96227 GGATCGAAGATGGTGAATCTTATCTTCCC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
96291 TAT
130 TAT
* * * *
96294 CTA-CCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAG
1 C-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * *
96358 CAGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
96422 CTAT
129 CTAT
* * *
96426 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
96491 GGATCGAAGATGGTGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
96555 TAT
130 TAT
* * * *
96558 CTA-CCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAG
1 C-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * *
96622 CAGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
96686 CTAT
129 CTAT
96690 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
96755 AGATCGAAGATGGTGAATCTTATCTTCCC-AACACAGTAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
96819 AAT
130 TAT
* * * * * *
96822 CTCCATAAACAGTAGTGGAGTAGGTTGAAGATTGCAAATTCCGTCACCCTAGGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
96887 AGATCGAATATGGTGAATCTTATCGT-CCTTATACTGTGGAGAAGGAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
96951 TAT
130 TAT
* * *** *
96954 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAATGGAGA---AGT-AGATTTAAGCCATTAGTC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT--TGCAGATTCTGTCA-CCCTAAG-CAGTAGT-
** * ** * * * * ** ** *
97015 CTATCA-CCCTAAGCAGTAGTGGA--GTAGGTT--GAAGATA-A-TGGAGAAGTAGATTTAAGCC
61 GGAGCAGATCGAAG-A-TGGTGAATCTTATCTTCCCTA-ATACAGTAGAGAAGTAGATTTAAG-C
97073 ATTAGTCCTAT
122 ATTAGTCCTAT
* * *
97084 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
97149 GGATCGAAGATGATGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTT-AGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
97212 TAT
130 TAT
* * * * * * *
97215 CTCCCTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAACAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
97280 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
97344 TAT
130 TAT
* * *
97347 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
97412 GGATCGAAGGTGGTGGATCTTATCTTCTC-AAGACAGTAGAGAAGGAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
97476 TAT
130 TAT
* * * * * *
97479 CTCCCTAAGCAGTACT-GAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAACAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
97543 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
97607 AAT
130 TAT
* * * * * *
97610 CTCCATAAACAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
97675 AGATCGAAGATGGAGAGTCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
97739 AAT
130 TAT
* * * * * *
97742 CTCCATAAACAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
97807 AGATCGAAGATGGAGAGTCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
97871 TAC
130 TAT
* * * * *
97874 CTA-CCTAAGCAGCACTGGAGTAGGTTGAAGATTACAGATTCTGTCATCCTAAGCAGTAGTGAAG
1 C-ACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* * * * * *
97938 CAGATCGAATATGATGAATCTGACCTTTCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
98002 CTAT
129 CTAT
* * * *
98006 CACCCTTAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
98071 AGATCGAAGATGGTGGATCTTATCTTCCC-AACACAGTGGAGAAGCAGATTTAAGCCATTAGCCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
98135 AAT
130 TAT
* * * * * *
98138 CTCCATAAACAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTAACCCTAAGCGGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
98203 AGATCGAACATGGTGAATCTTATCGTCCCT-ATACTGTGGAGAAGGAGATTTAAGCCATTAGTCT
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
98267 TAT
130 TAT
* * *
98270 CAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAG-
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
98334 TGTATCGAAGATGGAGAATCTTATCTTCTC-AAGACAGTAGAGAAGCAGATTTAAGCCATTTGTC
66 AG-ATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
98398 CTAT
129 CTAT
* * * ** *
98402 CTCCCTAAGCAGTACTAGAGTAGGTTGAAGATAACAGATTCTGTCACCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * **
98467 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGGCGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
98531 TAT
130 TAT
* * *
98534 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAAGCAGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * ** * *
98599 GGATCGAAGATGGTGAATCTTATCTTCTC-ACGACAGTAGAGAAGCAGATTT-AGCCATTTGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
98662 TAT
130 TAT
* * * *
98665 CTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGAAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
98730 AGATCGAATATGATGAATCTGACCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
98794 TAT
130 TAT
* * * *
98797 CACCCTAATCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTTTCACCCTAAGCATTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
98862 GGATCGAAGATGGTGAATCTTATCTTCTC-AAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
*
98926 AAT
130 TAT
* * * * * * * *
98929 CTCCCTAAGAAGTAGTAGAGTCGGTTGAAGATTACAGATTCTGTTATCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
98994 AGATCGAATATGATGAATCCTT-CCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
66 AGATCGAAGATGGTGAAT-CTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
99057 CTAT
129 CTAT
* * * * * * ** *
99061 CAACCTAAGCAGTAGAAGCAGTA-GTGGAGCAGATCGAAGATGGTGAATCATATCTTCCCAATGC
1 CACCCTAAGCAGTAG-TGGAGTAGGTTGA--AGATTGCAGATTCTG--TC--A-C--CCTAA-GC
* * * * ** ** * * * * ** * * * *
99125 AGTGGCGAAGCAAATTTAAG-TCATTAGTCCTATC-ACCCT-AGGCAGTAGTGGAGTAGGTTGAA
55 AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAA
* *
99187 G-ATTGTAGATTCTGT
120 GCA-T-TAG-TCCTAT
* * * * ** * * *
99202 CACCCTAACCAGTAGTGGAGCAGATCGAAGA-TAAAGAATCT-T-A-TCT-A--AGTAGTAGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG-
* * ** * * * * * * * * *
99260 C-GGTTGAAGAT--T-ACAGATTCTGTTATCCTAA-ACAGTAGTGGAGCAGATCGAATATG-ATG
65 CAGATCGAAGATGGTGA-ATCTTATCTT-CCCTAATACAGTAGAGAAGTAGAT---TTAAGCATT
*
99319 ACTCCT-T
125 AGTCCTAT
* * * * * * * * * *
99326 C-CTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TCCTATCAACCTAAGCAGTAGA
1 CAC--CCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTGTC-ACC----C--T--A
* *
99387 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCC-AACACAAT-GTAGAAGTAGAT
52 AGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGAT
99450 TTAAGCCATTAGTCCTAT
116 TTAAG-CATTAGTCCTAT
* * ** * * *
99468 CACCCTTAGCAGTAGT-GAGTCGGTTGAAGATTATAGATGCTGTCACCCTAAACAGTAGTGGAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * *
99532 AGATCGAATATGATGAATCTTACCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTTGTTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
99596 TAT
130 TAT
* *
99599 CACCCTAAGCAGTAGTTGCGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
99664 AGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTTGTTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
99728 TAT
130 TAT
* *
99731 CACCCTAAGCAGTAGTTGCGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * *
99796 AGATCGAATATGGTGAATCTTATCGT-CCTAATACAGTGGAGAAGCATATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
99860 TAT
130 TAT
* * * * *
99863 CACCCTAAGCCGTAGTGGAGTAGGTTCAAGATTGAAGATTCTGTCACCCTAGGGAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* *
99928 AGATCGAAGATGGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCA-AGTTTAAGGCATTAG-C
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGA-TTTAA-GCATTAGTC
*
99990 CGAAT
129 C-TAT
* * * * *
99995 CTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * * * * *
100060 AGATTGAATATGATGAATCTTACCTTCCC-AATACAG-GGAAGAAGCAGATTTAAACCGTCAGTC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTAGATTT-AAGCATTAGTC
100123 CTAT
129 CTAT
* * ** * * * * * * * * * *
100127 CACCCCAAGCAGTACT-GATGCCGATCGAAGATAG-TGAATCTTATCTTCCC-AATACAGTGGAG
1 CACCCTAAGCAGTAGTGGA-GTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTG
* ** ** ** * * * * * * *
100189 AAGCA-AGTTTAAGGCAT--T-AGCCGAATC-TCCCTAA-GCCGTAGTGGAGTCGGTTGAAG-AT
62 GAGCAGA-TCGAA-G-ATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
100247 TACAGATTCTGT
124 T--AG-TCCTAT
* * * * * * * *
100259 CACCCTAAACAGTAGTGGAGCAGATTGAATA-TG-ATGAATCT-T-ACCTTCCCAATACAG-GGA
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA-GATTCTGTCA-C--CCTAA-GCAGTAG-
* * ** *** * * * * * * * * **
100319 AGAAGCAGATTTAA-ACCATCAGTCCTATC-ACCCTAA-GCAGTAGTGATGCAGATCGAAG-ATA
60 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT-
* *
100380 GTGAATCTTAT
124 -T-AGTCCTAT
* * * * * * *
100391 CTTCCC-AA-TA-CAGTGGAGAAGGAAATTTAAGTCATT--AG-TCCTATCACCCTAAGCAGTAG
1 C-ACCCTAAGCAGTAGTGGAGTAGG---TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * * ** * * * * * * * **
100450 TGGAGTAGGTTGAAGATTGCAGACTC-TGTC-ACCCTAA-CCAGTAGTGGAGCAGATCGAAG-AT
60 TGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCAT
* *
100511 GGAGAATCTTAT
124 -TAG--TCCTAT
* * * ** *
100523 CTTCCC-AA-TA-TAGTGGAGAAGCAGATTTCAGCCATT-C-G-TCCTGTCACCCTAAGCAGTAG
1 C-ACCCTAAGCAGTAGTGGAGTAG--G-TTGAAG--ATTGCAGATTCTGTCACCCTAAGCAGTAG
* * ** * * * * * * **
100582 TGGAGTC-GGTTGAAGATTGCAGATTCTT-TC-ACCCTAA-GCAGTAGTGGAGCAGATCGAAGAC
60 TGGAG-CAGATCGAAGA-TGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-C
* * * *
100643 GGTGAATGGAGAAGCAGATTT
122 -----AT-TAG--TC--CTAT
* * * * * ** * *
100664 AAGCCATTAGTCCTA-TCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTCTGTCACC
1 CA-CCCTAAG--C-AGT-A--GT--GGAGTAG-GTTGAAGATTGCAG-------ATTCTGTCACC
* * * *
100728 CTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAAACTTACCTTCCC-AATACAGT-GTAGAAGCA
49 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAG-AGAAGTA
100791 GATTTAAGCCATTAG-CTCTAT
113 GATTTAAG-CATTAGTC-CTAT
* * * *
100812 CACCCTAAGCAGTAGTCGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGAAGG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
100877 AGATTGAAGATAGTGAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
100941 TAT
130 TAT
* * ** * * *
100944 CACACTAAGCAATAGTGGAGTAGGTCAAAGACTGCAGATTCTGTCACCCTAAGTAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * * * *
101009 AGATCGAATATGGCGAATCTTATCTT-CCTAATATAGTGGAGAAGCAGATTAAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
101073 TAT
130 TAT
* * * * *
101076 CACCCTAAGCAGTAGTCGAGAAGGTTGAAGATTGTAGATTCTGTCACCTTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * *
101141 GGATCGAAGATGGTGAATCGTATCTTCCC-AATACAGTGGAGAAGTAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
101205 TAT
130 TAT
* * * * * *
101208 CTCCCTAAGCAGTAGAGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGTAGTGCAGC
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
* * * *
101273 AGATCAAAAATGGTGAATCTTATCTT-CCTAATACAGTCGAGAAGCAGATTTAAGCCATTAGTCC
66 AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTCC
101337 TAT
130 TAT
* *
101340 CAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCATATTCTGTCACCCTAAGCAGTAGT-GATG
1 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-G
* * * * *
101404 CAGATCGAAGATGGTGAATCTTATCTTCCC-AAGATAGTGGAGAAGGAAATTTAAGTCATTAGTC
65 CAGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAG-CATTAGTC
101468 CTAT
129 CTAT
101472 CACCCTAAGCAGTAGTGGAGT
1 CACCCTAAGCAGTAGTGGAGT
101493 CCTGTCACCC
Statistics
Matches: 21300, Mismatches: 3653, Indels: 2130
0.79 0.13 0.08
Matches are distributed among these distances:
121 5 0.00
122 10 0.00
123 21 0.00
124 31 0.00
125 50 0.00
126 44 0.00
127 22 0.00
128 130 0.01
129 218 0.01
130 182 0.01
131 1878 0.09
132 16815 0.79
133 338 0.02
134 297 0.01
135 152 0.01
136 162 0.01
137 74 0.00
138 37 0.00
139 76 0.00
140 73 0.00
141 94 0.00
142 52 0.00
143 58 0.00
144 34 0.00
145 44 0.00
146 30 0.00
147 27 0.00
148 38 0.00
149 31 0.00
150 15 0.00
151 21 0.00
152 14 0.00
153 44 0.00
154 16 0.00
155 94 0.00
156 16 0.00
157 38 0.00
158 19 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC
AGATCGAAGATGGTGAATCTTATCTTCCCTAATACAGTAGAGAAGTAGATTTAAGCATTAGTCCT
AT
Found at i:75924 original size:44 final size:42
Alignment explanation
Indices: 74902--75939 Score: 163
Period size: 44 Copynumber: 23.6 Consensus size: 42
74892 ATTAGTCCTA
* * *
74902 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATT-GAGATTCT
* * * * * *
74945 GTCACCCTAAGCGGTAGTGGAGCAGATCGAATATGGTGAATCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGATTCT
* * * * * *
74988 T-ATCTTCCCAACACAGTAGAGAAAG-AGATTTAAGCCATT-AG-TCCT
1 TCA-C--CCTAA-GCAGTAGTG-GAGCAGATTGAAG--ATTGAGATTCT
* *
75033 ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTCT
* * * *
75077 GTCACCCTAAGCAGTGGTGGAGCAGATCT-AAGATGGTGAATCT
1 -TCACCCTAAGCAGTAGTGGAGCAGAT-TGAAGATTGAGATTCT
* * * * * *
75120 T-ATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATT-AG-TCCT
1 TCA-C-CCT-AA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGATTCT
* * ** *
75165 ATCACCCTAAGGAGTAGTGGAGTAGGGTGAAGATTGCAGAGTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTCT
* ** * *
75209 GTCACCTTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCATATCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT--TG-A-GAT-TCT
* ** * * * * *
75257 TCTCAAT-A-CAGTAGAGAAGCAGATTTAAGCCATT-TG-TCCT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAG--ATTGAGATTCT
* * * * *
75297 ATCTCCCTAAGCAGTACTGGAGTAGGTTGAAGATTACAGATTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATT-GAGATTCT
* * * *
75341 GGCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTCT
* ** * * * *
75385 GTCACCCTAAGCAGTGGTGGAGTGGATCGAAGATGGTGAATCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGATTCT
* * * * * *
75428 T-ATCTTCTCAATACAGTAGAGAAGCAGATTTAAGCCATT-AG-TCCT
1 TCA-C-CCT-AA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGATTCT
* * * * * * *
75473 ATCTCCTTAAGCAGTACTAGAGTAGGTTGAAGATTACAGATTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATT-GAGATTCT
* * *
75517 GTCACCCTAAGCAG-ATGTGAAGCAGATAGAATA-TGATGAATCTGACT
1 -TCACCCTAAGCAGTA-GTGGAGCAGATTGAAGATTGA-G-AT-T--CT
* * * * * * * *
75564 T-TCCC-AATACAGTGGAGAAGTAGATTTAAGCCATT-AG-TCCT
1 TCACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGAGATTCT
* * * *
75605 ATCACCCTCAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTC-T
* ** * * *
75650 TCACCCTAAGCATTAGTGGAGCAGATCAAAGATGGTGAATCT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGATTCT
* * *
75692 T-ATCTTCTCAA-CA-TAGTGGAGAAGCAGATTTAAGCCATT-AG-TCCT
1 TCA-C-CCT-AAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGAGATTCT
* * * *
75737 ATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAAATTCTT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTC-T
* * *
75782 TCACCCTAAGCAGTAGTGGAGCAGATCGAATA-TGATGAATCT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGA-GATTCT
* * * * * * *
75824 TACCATCCCGAAACAGTGGAGAAGCAGATTTAAGCCATT-AG-CTCT
1 T--CA-CCCTAAGCAGTAGTGGAGCAGATTGAAG--ATTGAGATTCT
* * *
75869 ATCAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCT
1 -TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTG-AGATTCT
75913 GTCACCCTAAGCAGTAGTGGAGCAGAT
1 -TCACCCTAAGCAGTAGTGGAGCAGAT
75940 CGAATATGGT
Statistics
Matches: 689, Mismatches: 210, Indels: 190
0.63 0.19 0.17
Matches are distributed among these distances:
40 2 0.00
41 33 0.05
42 21 0.03
43 150 0.22
44 300 0.44
45 128 0.19
46 26 0.04
47 24 0.03
48 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGAGATTCT
Found at i:81714 original size:68 final size:69
Alignment explanation
Indices: 81575--81703 Score: 199
Period size: 68 Copynumber: 1.9 Consensus size: 69
81565 TGAAGATTAC
* * * *
81575 AGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGATA
1 AGATTCTGTCACCCTAAGCAGAAGTGGAGCAGATCGAAGATGGTGAAACTTATCTCCCCAAGATA
81640 GTGG
66 GTGG
81644 AGATTCTG-CACCCTAAGCAGAAGT-GATGCAGATCGAAGATGGTGAAACTTATCTCCCCAA
1 AGATTCTGTCACCCTAAGCAGAAGTGGA-GCAGATCGAAGATGGTGAAACTTATCTCCCCAA
81704 TGCAATGGAG
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
67 2 0.04
68 45 0.82
69 8 0.15
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (69 bp):
AGATTCTGTCACCCTAAGCAGAAGTGGAGCAGATCGAAGATGGTGAAACTTATCTCCCCAAGATA
GTGG
Found at i:81798 original size:200 final size:201
Alignment explanation
Indices: 81443--81846 Score: 555
Period size: 200 Copynumber: 2.0 Consensus size: 201
81433 TGAAGATTGC
* * * * *
81443 AGATTCTGTCAGCCTAAGCAGTAGTGGAGTGGATCAAAAATGGTGAATCTTATCTTCTCAATACA
1 AGATTCTGTCACCCTAAGCAGAAGTGGAGTGGATCAAAAATGGTGAAACTTATCTCCCCAATACA
* * * * *
81508 GTAGAGAAGCAGATTTAAGCCAGTCGTCCTATCACCCTAAGGAGTACTGGAGTCGGTTGAAGATT
66 ATAGAGAAGCAGATTTAAGCCAGTAGTCCTATCACACTAAGCAATACTGGAGTCGGTTGAAGATT
* *
81573 ACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGA-AGATGGTGAATCTTATCTTCTCAAG
131 ACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC-ATAGATGGTGAATCTTATCTTCCCAAC
*
81637 ATAGTGG
195 ACAGTGG
* * *
81644 AGATTCTG-CACCCTAAGCAGAAGT-GA-TGCAGATCGAAGATGGTGAAACTTATCTCCCCAATG
1 AGATTCTGTCACCCTAAGCAGAAGTGGAGTG--GATCAAAAATGGTGAAACTTATCTCCCCAATA
* * *
81706 CAATGGAGAAGCAGATTTAAGCCATTAGTCCTATCACACTAAGCAATAGTGGAGTCGGTTGAAGA
64 CAATAGAGAAGCAGATTTAAGCCAGTAGTCCTATCACACTAAGCAATACTGGAGTCGGTTGAAGA
* * *
81771 TTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCATATATGGTGATTCTTATCTTCCCAA
129 TTACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCATAGATGGTGAATCTTATCTTCCCAA
81836 CACAGTGG
194 CACAGTGG
81844 AGA
1 AGA
81847 AGCAGATTTA
Statistics
Matches: 178, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
198 2 0.01
199 3 0.02
200 165 0.93
201 8 0.04
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (201 bp):
AGATTCTGTCACCCTAAGCAGAAGTGGAGTGGATCAAAAATGGTGAAACTTATCTCCCCAATACA
ATAGAGAAGCAGATTTAAGCCAGTAGTCCTATCACACTAAGCAATACTGGAGTCGGTTGAAGATT
ACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCATAGATGGTGAATCTTATCTTCCCAACA
CAGTGG
Found at i:82060 original size:88 final size:87
Alignment explanation
Indices: 81918--82085 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
81908 GATTCTGTCC
* * * * *
81918 CCCTAAGCAGTCGTGTAGCGATCGAAGATGGTGAATCCTATCTTCTCAAGATAGTGGAG-AAGCA
1 CCCTAAGCAGTAGTGGAGCGATCGAAGATGGCGAATCCTATCGTCCCAAGATAGTGGAGAAAG-A
*
81982 GATTTAAGCTATTAGTACAATCT
65 GATTTAAGCCATTAGTACAATCT
* * * * *
82005 CCCTAAGCAGTAGTGGAGCAGATCGAATATGGCGCATCTTATCGTCCCTATATAGTGGAGAAAGA
1 CCCTAAGCAGTAGTGGAGC-GATCGAAGATGGCGAATCCTATCGTCCCAAGATAGTGGAGAAAGA
82070 GATTTAAGCCATTAGT
65 GATTTAAGCCATTAGT
82086 CCTGTCACCC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
87 17 0.25
88 48 0.71
89 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (87 bp):
CCCTAAGCAGTAGTGGAGCGATCGAAGATGGCGAATCCTATCGTCCCAAGATAGTGGAGAAAGAG
ATTTAAGCCATTAGTACAATCT
Found at i:82117 original size:219 final size:220
Alignment explanation
Indices: 81786--82217 Score: 631
Period size: 219 Copynumber: 2.0 Consensus size: 220
81776 GATTCTGTCA
* *
81786 CCCTAAGCAGTAGTGGAGCAGATCATATATGGTGATTCTTATCTTCCCAACACAGTGGAGAAGCA
1 CCCTAAGCAGTAGTGGAGCAGATCATATATGGCGATTCTTATCGTCCCAACACAGTGGAGAAGCA
* * *
81851 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
66 GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGACTAGGTTGAAGAGTGCAGATTCTGT
* * * * *
81916 CCCCCTAAGCAGTCGT-GTAG-CGATCGAAGATGGTGAATCCTATCTTCTCAAGATAGTGGAGAA
131 CACCCTAAGCAGTAGTGGT-GTAGATCGAAGATGGTGAATCCTATCTTCCCAAGACAGTGGAGAA
*
81979 GCAGATTTAAGCTATTAGTACAATCT
195 GCAGATTTAAGCCATTAGTACAATCT
* * *
82005 CCCTAAGCAGTAGTGGAGCAGATCGA-ATATGGCGCA-TCTTATCGTCCCTATATAGTGGAGAAA
1 CCCTAAGCAGTAGTGGAGCAGATC-ATATATGGCG-ATTCTTATCGTCCCAACACAGTGGAG-AA
* *
82068 G-AGATTTAAGCCATTAGTCCTGTCACCCTTAGCAGTAATGGACTAGGTTGAAGAGTGCAGATTC
63 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGACTAGGTTGAAGAGTGCAGATTC
* *
82132 TGTCACCCTAAGCAGTAGTGGTGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
128 TGTCACCCTAAGCAGTAGTGGTGTAGATCGAAGATGGTGAATCCTATCTTCCCAAGACAGTGGAG
82197 AAGCAGATTTAAGCCATTAGT
193 AAGCAGATTTAAGCCATTAGT
82218 CCTATCACCC
Statistics
Matches: 190, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
219 127 0.67
220 63 0.33
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (220 bp):
CCCTAAGCAGTAGTGGAGCAGATCATATATGGCGATTCTTATCGTCCCAACACAGTGGAGAAGCA
GATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGACTAGGTTGAAGAGTGCAGATTCTGT
CACCCTAAGCAGTAGTGGTGTAGATCGAAGATGGTGAATCCTATCTTCCCAAGACAGTGGAGAAG
CAGATTTAAGCCATTAGTACAATCT
Found at i:82409 original size:44 final size:44
Alignment explanation
Indices: 82346--82453 Score: 171
Period size: 44 Copynumber: 2.5 Consensus size: 44
82336 TTTAACGCAT
82346 TAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAG
1 TAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAG
*
82390 TAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAG
1 TAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAG
* * * *
82434 TCGTGGAGTAGATCGAAGAT
1 TAGTGTAGTAGGTTGAAGAT
82454 GGTGAATCTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (44 bp):
TAGTGTAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAG
Found at i:83100 original size:44 final size:44
Alignment explanation
Indices: 83037--83133 Score: 158
Period size: 44 Copynumber: 2.2 Consensus size: 44
83027 ATTTGTCCTA
* *
83037 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTG
* *
83081 TCACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTTTT
1 TCACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTG
83125 TCACCCTAA
1 TCACCCTAA
83134 ACAATAGTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
TCACCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTG
Found at i:83291 original size:176 final size:176
Alignment explanation
Indices: 82908--83277 Score: 596
Period size: 176 Copynumber: 2.1 Consensus size: 176
82898 AGTCCAATCT
*
82908 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAG
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAATAGTGGAGCAG
** * * *
82973 ATCGAATATGATGAATCTTAGCTTCCCAATATTGCGGAGCAGCAGATTTAAGCCATTTGTCCTAT
66 ATCGAATATGATGAATCTTAGCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
*
83038 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
131 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTCA
* * * * *
83084 CCCTAAGAAGTAGTGGAGTAGGTTAAAGATTGCAGATTTTTTCACCCTAAACAATAGTGGTGCAG
1 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAATAGTGGAGCAG
* *
83149 ATCGAATATGATGAATCTTATCTTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTAT
66 ATCGAATATGATGAATCTTAGCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
* *
83214 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAAATTCTTTCA
131 CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTCA
83260 CCCTAAGCAGTAGTGGAG
1 CCCTAAGCAGTAGTGGAG
83278 CGGATCGAAG
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
176 177 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (176 bp):
CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAATAGTGGAGCAG
ATCGAATATGATGAATCTTAGCTTCCCAATACAGCGGAGAAGAAGATTTAAGCCATTAGTCCTAT
CACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAAATTCTGTCA
Found at i:85893 original size:44 final size:45
Alignment explanation
Indices: 85578--87458 Score: 288
Period size: 44 Copynumber: 42.7 Consensus size: 45
85568 CGCATTACTC
* *
85578 CTATCACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * ** *
85622 CTGTCA-CCTAAGCAGTAGTGGAG-CAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
** * * * *
85664 CTTATC-TTCTCAAG-A-TAGTGGAGAAGCTGATTTAAGGCATT--AG-TC
1 C-TATCACCCT-AAGCAGTAGTGGAG--TCAGATTGAA-G-ATTGCAGATT
** *
85709 CTATCACCCTAAGCAGTAGTGGAGTCAG-TTGAAGGGTGCAAATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * *
85753 CT-GCACCCTAAGCAGAAG-GGA-TGCAGATCGAAGATGGTG-AAACTT
1 CTATCACCCTAAGCAGTAGTGGAGT-CAGATTGAAGAT--TGCAGA-TT
* * * * * * *
85798 CTCTC-CCC-AATGCAATGGAGAAG-CAGATTTAAGCCATT--AG-TC
1 CTATCACCCTAA-GCAGTAGTGGAGTCAGATTGAAG--ATTGCAGATT
*
85840 CTATCACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * **
85884 CTGTCACCCTAAGCTGTAGTGGAG-CAGATCGAAGA-TGGTGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * * *
85927 CTTATCTTCCC-AA-CA-CAGTGGAGAAGCAGATTTAAGCTATT--AG-TC
1 C-TATC-ACCCTAAGCAGTAGTGGAG--TCAGATTGAAG--ATTGCAGATT
* *
85972 CTATCACCCTAAGCAGTTGTGGAGT-AGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * *
86016 CTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAATATGGTGC--A-T
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT--TGCAGATT
* * * *
86059 CTTATCGTCCCTATA-CAGT-G-GAAG--AGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTA-AGCAGTAGTGGAGTCAGATTGAAG--ATTGCAGATT
* * * * *
86101 CAATCACCCTTAGCAGTAATGGAGT-AGGTTGAAGAGTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * ** *
86145 CTGTCACCCTAAGCAGTAGTGGTG-CAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * * * * * *
86188 CTTATCTTCCC-AATACAATGGAGAAG-CAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTCAGATTGAAG--ATTGCAGATT
* *
86233 CTATCACCCTAAGAAGTAGTGGAGT-AGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * ** *
86277 CTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
** ** * * *
86320 CTTATCTTCC-AAATA-TAGTGGAGAAGCAGATTTAACGCATT--AG-TC
1 C-TATCACCCTAAGCAGTAGTGGAG--TCAGATTGAA-G-ATTGCAGATT
* * *
86365 CAATCACCCTAAGCAGTAGTGTAGT-AGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * ** *
86409 CTATCACCCTAAGCAGTCGTGGAGT-AGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * * *** * *
86452 CTTACCTTCCC-AATACAGTGGAAAAG-CAGATTTAAGCCATT--AG-CT
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTCAGATTGAAG--ATTGCAGATT
* * * *
86497 CTATCACCCTAAGCAGTAGTTGAGT-AGGTTAAAGATAGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * * * *
86541 TTGTCACCCTAAACAGTAGTGGAG-CAGATCGAATA-TG-ATGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCA-GATT
* * * * *
86584 CTTATCTTCCC-AATACAGTAGAGAAG-CAGATTTAAGCCATT--AG--T
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTCAGATTGAAG--ATTGCAGATT
* * * * *
86628 CTTATCTCCGTAAGCAGAAGTGGAGT-AGGTTGAAGATTACAGATT
1 C-TATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* ** * **
86673 CTGTCACCCTAAGCAGTAGTGGAG-CAGATCAAAGATGGTGAATCTTAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT--TGCA-GAT-T
* * *
86721 CTTATCACCCTAAGCAGTAGTGGAGT-TGGTTGAAGATTGCAAATT
1 C-TATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * ** *
86766 CTTTCACCCTAAGCAGTAGTGGAG-CGGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
** * * * *
86809 CTTATCTTCTTAAG-A-TAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATCACCCTAAGCAGTAGTGGAG--TCAGATTGAAG--ATTGCAGATT
* * * * *
86854 CAATCTCCCAAAGCAGTAGAGGAGT-AGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * *
86898 CTGTCACCCTAAACAGTAGTGGAG-CAGA-TCAA-ATATG-ATGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT-TGCA-GATT
* ** * * * * *
86941 CTAACTTTCC-AA-AAATACAGTGGAGAGGCAGATTTAAGTCATT--AG-CT
1 CTATC-ACCCTAAGCAGT--AGT-G-GAGTCAGATTGAAG--ATTGCAGATT
* *
86988 CTATCACCCTAAGCAGTAGTGGAGT-AGGTTGCAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* *
87032 CTGTCACCCTAAGCAGTAGTGGAG-CAGA-TCAA-ATATG-ATGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGAT-TGCA-GATT
* ** * * * * *
87075 CTAACTTTCC-AA-AAATACAGTGGAGAAGCAGATTTAAGTCATT--AG-CT
1 CTATC-ACCCTAAGCAGT--AGTGGAG--TCAGATTGAAG--ATTGCAGATT
* *
87122 CTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * ** *
87166 CTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * * * * * *
87209 CTTATCTTCCC-AATACAATAGAGAAG-CAGACTT-AAGCCACT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTCAGA-TTGAAG--ATTGCAGATT
* * * *
87254 CCATCACCCTAAGAAGTAGTGGAGT-AGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
* * ** *
87298 CTGTCACCCTAAGCAGTAGTGGAG-CAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
** * ** * * *
87341 CTTATC-TTCGAAATA-TAGTGGAGAAGCAGATTTAACGCATT--AG-TC
1 C-TATCACCCTAAGCAGTAGTGGAG--TCAGATTGAA-G-ATTGCAGATT
* * *
87386 CTATCACCCTAAGCAGTAGTGTAGT-AGGTTGAAGATTGAAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
*
87430 CTGTCACCCTAAGCAGTAGTGGAG-CAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTCAGAT
87459 CGAATATAGT
Statistics
Matches: 1280, Mismatches: 356, Indels: 402
0.63 0.17 0.20
Matches are distributed among these distances:
39 1 0.00
40 8 0.01
41 38 0.03
42 83 0.06
43 296 0.23
44 511 0.40
45 170 0.13
46 75 0.06
47 38 0.03
48 23 0.02
49 31 0.02
50 2 0.00
51 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (45 bp):
CTATCACCCTAAGCAGTAGTGGAGTCAGATTGAAGATTGCAGATT
Found at i:86752 original size:93 final size:93
Alignment explanation
Indices: 86627--86816 Score: 299
Period size: 93 Copynumber: 2.0 Consensus size: 93
86617 AAGCCATTAG
* * *
86627 TCTTATCTCCGTAAGCAGAAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAG
1 TCTTATCACCCTAAGCAGAAGTGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCAGTAG
86692 TGGAGCAGATCAAAGATGGTGAATCTTA
66 TGGAGCAGATCAAAGATGGTGAATCTTA
* * * *
86720 TCTTATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCAAATTCTTTCACCCTAAGCAGTAG
1 TCTTATCACCCTAAGCAGAAGTGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCAGTAG
* *
86785 TGGAGCGGATCGAAGATGGTGAATCTTA
66 TGGAGCAGATCAAAGATGGTGAATCTTA
86813 TCTT
1 TCTT
86817 CTTAAGATAG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (93 bp):
TCTTATCACCCTAAGCAGAAGTGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCAGTAG
TGGAGCAGATCAAAGATGGTGAATCTTA
Found at i:86785 original size:225 final size:225
Alignment explanation
Indices: 86498--86930 Score: 652
Period size: 225 Copynumber: 1.9 Consensus size: 225
86488 CCATTAGCTC
* *
86498 TATCACCCTAAGCAGTAGTTGAGTAGGTTAAAGATAGCAGATTTTGTCACCCTAAACAGTAGTGG
1 TATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATAGCAAATTTTGTCACCCTAAACAGTAGTGG
* *
86563 AGCAGATCGAATATGATGAATCTTATCTTCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAGT
66 AGCAGATCGAAGATGATGAATCTTATCTTCCCAAGACAGTAGAGAAGCAGATTTAAGCCATTAGT
** ** * *
86628 CTTATCTCCGTAAGCAGAAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGT
131 CCAATCTCCCAAAGCAGAAGAGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGT
86693 GGAGCAGATCAAAGATGGTGAATCTTATCT
196 GGAGCAGATCAAAGATGGTGAATCTTATCT
* * * *
86723 TATCACCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGCAAATTCTT-TCACCCTAAGCAGTAGTG
1 TATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATAGCAAATT-TTGTCACCCTAAACAGTAGTG
* * ** * *
86787 GAGCGGATCGAAGATGGTGAATCTTATCTTCTTAAGATAGTGGAGAAGCAGATTTAAGCCATTAG
65 GAGCAGATCGAAGATGATGAATCTTATCTTCCCAAGACAGTAGAGAAGCAGATTTAAGCCATTAG
* *
86852 TCCAATCTCCCAAAGCAGTAGAGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAG
130 TCCAATCTCCCAAAGCAGAAGAGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAG
86917 TGGAGCAGATCAAA
195 TGGAGCAGATCAAA
86931 TATGATGATT
Statistics
Matches: 185, Mismatches: 22, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
225 183 0.99
226 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (225 bp):
TATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATAGCAAATTTTGTCACCCTAAACAGTAGTGG
AGCAGATCGAAGATGATGAATCTTATCTTCCCAAGACAGTAGAGAAGCAGATTTAAGCCATTAGT
CCAATCTCCCAAAGCAGAAGAGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGT
GGAGCAGATCAAAGATGGTGAATCTTATCT
Found at i:87970 original size:44 final size:44
Alignment explanation
Indices: 87920--88024 Score: 210
Period size: 44 Copynumber: 2.4 Consensus size: 44
87910 GTCCTATCAA
87920 CCTAAGCAGTAGTGGAGTAGGTTAAGAATTGCATATTCTGTCAC
1 CCTAAGCAGTAGTGGAGTAGGTTAAGAATTGCATATTCTGTCAC
87964 CCTAAGCAGTAGTGGAGTAGGTTAAGAATTGCATATTCTGTCAC
1 CCTAAGCAGTAGTGGAGTAGGTTAAGAATTGCATATTCTGTCAC
88008 CCTAAGCAGTAGTGGAG
1 CCTAAGCAGTAGTGGAG
88025 CAGATCGAAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (44 bp):
CCTAAGCAGTAGTGGAGTAGGTTAAGAATTGCATATTCTGTCAC
Found at i:88011 original size:176 final size:176
Alignment explanation
Indices: 87785--88156 Score: 561
Period size: 176 Copynumber: 2.1 Consensus size: 176
87775 ATTAGTCCTA
* *
87785 TCACCCTAAG-AATAGTGCAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
* *
87849 CAGATCGAATATCATGAATCTTACCTTCCCAATACAGCGGAGAAGCAGATTTAAGCCATTAGTCC
66 CAGATCGAAGATCATGAATCTTACCTTCCCAATACAGCGGAGAAGCAGATTTAAGCCATAAGTCC
* *
87914 TATCAACCTAAGCAGTAGTGGAGTAGGTT-AAGAATTGCATATTCTG
131 TATCAACCTAAGCAGTAGTGGAGTAGGTTGAAG-ATTACAGATTCTG
* *
87960 TCACCCTAAGCAGTAGTGGAGTAGGT-TAAGAATTGCATATTCTGTCACCCTAAGCAGTAGTGGA
1 TCACCCTAAGCAGTAGTGGAGTAGGTCAAAG-ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
** * * *
88024 GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGTCATAAGTC
65 GCAGATCGAAGATCATGAATCTTACCTTCCCAATACAGCGGAGAAGCAGATTTAAGCCATAAGTC
*
88089 CTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTG
130 CTATCAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTG
* *
88136 TCACCCTCAGCTGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
88157 CAGATCGAAG
Statistics
Matches: 178, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
175 13 0.07
176 162 0.91
177 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (176 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
CAGATCGAAGATCATGAATCTTACCTTCCCAATACAGCGGAGAAGCAGATTTAAGCCATAAGTCC
TATCAACCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTG
Found at i:88123 original size:88 final size:85
Alignment explanation
Indices: 87832--88112 Score: 219
Period size: 88 Copynumber: 3.2 Consensus size: 85
87822 ATTCTGTCAC
* * *
87832 CCTAAGCAGTAGTGGAGCAGATCGAATATCATGAATCTTACCTTCCCAATACAGCGGAGAAGCAG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGAT--TGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
*
87897 ATTTAAGCCATTAGTCCTATCAA
64 ATTTAAGTCA-TAGTCCTATCAA
* * * * * * * * * * * * *
87920 CCTAAGCAGTAGTGGAGTAGGT-TAAGAATTGCATATTCTGTCACCCTAA-GCAGTAGTGGAGTA
1 CCTAAGCAGTAGTGGAGCAGATCGAAG-ATTGAATCTTATCT-TCCC-AATACAGTGGAGAAGCA
* * * *
87983 G-GTTAAGAATTGCATA-TTCTGTCAC
63 GATTTAAG---T-CATAGTCCTATCAA
88008 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGAT--TGAATCTTATCTTCCCAATACAGTGGAGAAGCAG
*
88073 ATTTAAGTCATAAGTCCTATCAT
64 ATTTAAGTCAT-AGTCCTATCAA
88096 CCTAAGCAGTAGTGGAG
1 CCTAAGCAGTAGTGGAG
88113 TAGGTTGAAG
Statistics
Matches: 141, Mismatches: 38, Indels: 28
0.68 0.18 0.14
Matches are distributed among these distances:
86 15 0.11
87 16 0.11
88 77 0.55
89 18 0.13
90 15 0.11
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (85 bp):
CCTAAGCAGTAGTGGAGCAGATCGAAGATTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
TTAAGTCATAGTCCTATCAA
Found at i:88837 original size:110 final size:110
Alignment explanation
Indices: 88640--88860 Score: 282
Period size: 110 Copynumber: 2.0 Consensus size: 110
88630 TAAGCAGTAC
* * *
88640 TGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGTAGAGTGAAGCAGATCGAATATGATGA
1 TGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCAGAGTGAAGCAGATCGAAGATGATGA
* * *
88705 ATCTGACCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCATTAG
66 ATCTGACCTTCCCAAGACAGTGGAGAAGCAGATTGAAGCCATTAG
* * * * * *
88750 TGGAGTAGGTTGAAGATTGCAAATTCTTTCACCCTAAGCACTAGTGGAG-GGATCGAAGATGGTG
1 TGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCA-GAGTGAAGCAGATCGAAGATGATG
* * * *
88814 AATCTTATCTTCTCAAGATAGTGGAGAAGCAGATTGAAGCCATTAG
65 AATCTGACCTTCCCAAGACAGTGGAGAAGCAGATTGAAGCCATTAG
88860 T
1 T
88861 CCTATCACCC
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
110 88 0.94
111 6 0.06
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (110 bp):
TGGAGTAGGTTGAAGATTACAAATTCTGTCACCCTAAGCAGAGTGAAGCAGATCGAAGATGATGA
ATCTGACCTTCCCAAGACAGTGGAGAAGCAGATTGAAGCCATTAG
Found at i:91958 original size:44 final size:44
Alignment explanation
Indices: 91895--92135 Score: 206
Period size: 44 Copynumber: 5.5 Consensus size: 44
91885 ATTAGTCCTA
* *
91895 TCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
* * * * *
91939 TCACCCTAACCAGTAGTGGAGCAGATCGAAGATAG-AGAATCTG
1 TCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
** * * * * * * *
91982 ATC-TTCTCAA-TA-TAGTGGAGAAGCAGATTTAAGCTAGTC-G-TCCTA
1 -TCACCCT-AACCAGTAGTGGAGTAG--G-TTGAAGATTG-CAGATTCTG
*
92027 TCACCCTAACCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
1 TCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
*
92071 TCACCCTAACCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
1 TCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
**
92115 TCACCCTAATGAGTAGTGGAG
1 TCACCCTAACCAGTAGTGGAG
92136 CAGATCGAAG
Statistics
Matches: 155, Mismatches: 30, Indels: 24
0.74 0.14 0.11
Matches are distributed among these distances:
42 11 0.07
43 18 0.12
44 104 0.67
45 12 0.08
46 10 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (44 bp):
TCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
Found at i:92110 original size:176 final size:176
Alignment explanation
Indices: 91895--92276 Score: 527
Period size: 176 Copynumber: 2.2 Consensus size: 176
91885 ATTAGTCCTA
91895 TCACCC-AAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGTGGA
1 TCACCCTAAA-CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGTGGA
* * * * * *
91959 GCAGATCGAAGATA-GAGAATCTGATCTTCTCAATATAGTGGAGAAGCAGATTTAAGCTAGTCGT
65 GCAGATCGAAGA-AGGAGAATCTGATCTTCCCAACACAATGGAGAAGCAGATTTAAGCCAGTAGT
* *
92023 CCTATCACCCTAACCAGTAGTGGAGTCGGTTGAA-GATTGCAGATTCTG
129 CCAATCACCCTAACCAGTAGTGGAGTAGGTT-AAGGATTGCAGATTCTG
* * **
92071 TCACCCTAACCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAATGAGTAGTGGAG
1 TCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGTGGAG
* * * *
92136 CAGATCGAAGAAGGTGAATCTTATCTTCCCAACACAATGGAGAAGTAGATTTAAGCCATTAGTCC
66 CAGATCGAAGAAGGAGAATCTGATCTTCCCAACACAATGGAGAAGCAGATTTAAGCCAGTAGTCC
* * *
92201 AATCTCCCTAAGCAGTTGTGGAGTAGGTTAAGGATTGCAGATTCTG
131 AATCACCCTAACCAGTAGTGGAGTAGGTTAAGGATTGCAGATTCTG
* *
92247 TCACCCTAAACAGTAGTGGAGAAGATTGAA
1 TCACCCTAAACAGTAGTGGAGTAGGTTGAA
92277 TATGATGAAT
Statistics
Matches: 180, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
175 3 0.02
176 175 0.97
177 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (176 bp):
TCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGTGGAG
CAGATCGAAGAAGGAGAATCTGATCTTCCCAACACAATGGAGAAGCAGATTTAAGCCAGTAGTCC
AATCACCCTAACCAGTAGTGGAGTAGGTTAAGGATTGCAGATTCTG
Found at i:97027 original size:65 final size:65
Alignment explanation
Indices: 96923--97115 Score: 377
Period size: 65 Copynumber: 3.0 Consensus size: 65
96913 CCTTATACTG
*
96923 TGGAGAAGGAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAA
1 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAA
96988 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAA
1 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAA
97053 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
1 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
97116 TGCAGATTCT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 127 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (65 bp):
TGGAGAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATAA
Found at i:99118 original size:97 final size:97
Alignment explanation
Indices: 98982--99172 Score: 285
Period size: 97 Copynumber: 2.0 Consensus size: 97
98972 TTATCCTAAA
* * *
98982 CAGTAGTGGAGCAGATCGAATATGATGAATCCTTCCTTCCCAATACAGTGGAGAAGCAGATTTAA
1 CAGTAGTGGAGCAGATCGAAGATGATGAATCATTCCTTCCCAATACAGTGGAGAAGCAAATTTAA
99047 GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
66 GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
* * *
99079 CAGTAGTGGAGCAGATCGAAGATGGTGAATCATAT-CTTCCCAATGCAGTGGCGAAGCAAATTTA
1 CAGTAGTGGAGCAGATCGAAGATGATGAATCAT-TCCTTCCCAATACAGTGGAGAAGCAAATTTA
* * *
99143 AGTCATTAGTCCTATCACCCTAGGCAGTAG
65 AGCCATTAGTCCTATCAACCTAAGCAGTAG
99173 TGGAGTAGGT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
97 83 0.99
98 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (97 bp):
CAGTAGTGGAGCAGATCGAAGATGATGAATCATTCCTTCCCAATACAGTGGAGAAGCAAATTTAA
GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
Found at i:99458 original size:97 final size:97
Alignment explanation
Indices: 99292--99482 Score: 276
Period size: 97 Copynumber: 2.0 Consensus size: 97
99282 TTATCCTAAA
* * * *
99292 CAGTAGTGGAGCAGATCGAATATGATGACTCCTTCCTTCCCAATACAGTGGAGAAGCAGATTTAA
1 CAGTAGTGGAGCAGATCGAAGATGATGAATCCTTCCTTCCCAACACAATGGAGAAGCAGATTTAA
99357 GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
66 GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
* * * *
99389 CAGTAGTGGAGCAGATCGAAGATGGTGAAT-CTTATCTTCCCAACACAATGTAGAAGTAGATTTA
1 CAGTAGTGGAGCAGATCGAAGATGATGAATCCTT-CCTTCCCAACACAATGGAGAAGCAGATTTA
* *
99453 AGCCATTAGTCCTATCACCCTTAGCAGTAG
65 AGCCATTAGTCCTATCAACCTAAGCAGTAG
99483 TGAGTCGGTT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 3 0.04
97 80 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (97 bp):
CAGTAGTGGAGCAGATCGAAGATGATGAATCCTTCCTTCCCAACACAATGGAGAAGCAGATTTAA
GCCATTAGTCCTATCAACCTAAGCAGTAGAAG
Found at i:99673 original size:44 final size:44
Alignment explanation
Indices: 99593--99938 Score: 152
Period size: 44 Copynumber: 7.9 Consensus size: 44
99583 AAGCCATTTG
* * * *
99593 TTCTATCACCCTAAGCAGTAGTTGCGTAGGTTGAAGATTGCAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
* * **
99637 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
* * * * * * * *
99680 ATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--TG-
1 TTC-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGA
* * * *
99725 TTCTATCACCCTAAGCAGTAGTTGCGTAGGTTGAAGATTGCAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
* * * **
99769 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
* ** * * * * * *
99812 ATCTTATCGTCCTAATACAGTGGAGAAGCATATTTAAGCCATT--AG-
1 TTC-TATCACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGA
* * * * * *
99857 TCCTATCACCCTAAGCCGTAGTGGAGTAGGTTCAAGATTGAAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
* * * *
99901 TTCTGTCACCCTAGGGAGTAGTGGAGCAGATCGAAGAT
1 TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
99939 GGTGAATCTT
Statistics
Matches: 211, Mismatches: 73, Indels: 36
0.66 0.23 0.11
Matches are distributed among these distances:
41 6 0.03
43 44 0.21
44 118 0.56
45 36 0.17
46 3 0.01
47 2 0.01
48 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TTCTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGA
Found at i:100465 original size:88 final size:88
Alignment explanation
Indices: 100258--100466 Score: 271
Period size: 88 Copynumber: 2.4 Consensus size: 88
100248 ACAGATTCTG
* *
100258 TCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATGATGAATCTTACCTTCCCAATACAGGGAAGAA
*
100323 GCAGATTTAAACCATCAGTCCTA
66 GCAAATTTAAACCATCAGTCCTA
* *
100346 TCACCCTAAGCAGTAGT-GATGCAGATCGAAGAT-AGTGAATCTTATCTTCCCAATACAGTGG-A
1 TCACCCTAAGCAGTAGTGGA-GCAGATTGAAGATGA-TGAATCTTACCTTCCCAATACAG-GGAA
* ** *
100408 GAAGGAAATTTAAGTCATTAGTCCTA
63 GAAGCAAATTTAAACCATCAGTCCTA
* *
100434 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
100467 TGCAGACTCT
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
87 3 0.03
88 98 0.93
89 4 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATGATGAATCTTACCTTCCCAATACAGGGAAGAA
GCAAATTTAAACCATCAGTCCTA
Found at i:100581 original size:220 final size:220
Alignment explanation
Indices: 99906--100583 Score: 1060
Period size: 220 Copynumber: 3.1 Consensus size: 220
99896 GAAGATTCTG
* * *
99906 TCACCCTAGGGAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGT-GATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGA
99970 AGCAAGTTTAAGGCATTAGCCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATT
65 AGCAAGTTTAAGGCATTAGCCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATT
100035 CTGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAA
130 CTGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAA
*
100100 GAAGCAGATTTAAACCGTCAGTCCTA
195 GAAGCAGATTTAAACCATCAGTCCTA
* * *
100126 TCACCCCAAGCAGTACTGATGCCGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
100191 GCAAGTTTAAGGCATTAGCCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATTC
66 GCAAGTTTAAGGCATTAGCCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATTC
100256 TGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAAG
131 TGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAAG
100321 AAGCAGATTTAAACCATCAGTCCTA
196 AAGCAGATTTAAACCATCAGTCCTA
100346 TCACCCTAAGCAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * * * *
100411 GGAAATTTAAGTCATTAGTCC-TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGACT
66 GCAAGTTTAAGGCATTAG-CCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATT
* * * * *
100475 CTGTCACCCTAACCAGTAGTGGAGCAGATCGAAGATGGA-GAATCTTATCTTCCCAATATAGTGG
130 CTGTCACCCTAAACAGTAGTGGAGCAGATTGAATAT-GATGAATCTTACCTTCCCAATACAG-GG
* * *
100539 -AGAAGCAGATTTCAGCCATTC-GTCCTG
193 AAGAAGCAGATTTAAACCA-TCAGTCCTA
100566 TCACCCTAAGCAGTAGTG
1 TCACCCTAAGCAGTAGTG
100584 GAGTCGGTTG
Statistics
Matches: 426, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
219 2 0.00
220 416 0.98
221 8 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAAGTTTAAGGCATTAGCCGAATCTCCCTAAGCCGTAGTGGAGTCGGTTGAAGATTACAGATTC
TGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATACAGGGAAG
AAGCAGATTTAAACCATCAGTCCTA
Found at i:100641 original size:44 final size:45
Alignment explanation
Indices: 100432--100641 Score: 145
Period size: 44 Copynumber: 4.8 Consensus size: 45
100422 TCATTAGTCC
* * * *
100432 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGACTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATTCT
* * * *
100476 TGTCACCCTAACCAGTAGTGGAGCAGATCGAAGA-TGGAGAATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATTCT
* * * *
100520 TATCTTCCC-AA-TA-TAGTGGAG-A-A--GCAGATTTCAGCCATTCGT
1 TATC-ACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAG--ATTC-T
* * *
100562 CCTGTCACCCTAAGCAGTAGTGGAGTC-GGTTGAAGATTGCAGATTCT
1 --TATCACCCTAAGCAGTAGTGGAG-CAGATCGAAGATTGCAGATTCT
100609 T-TCACCCTAAGCAGTAGTGGAGCAGATCGAAGA
1 TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGA
100642 CGGTGAATGG
Statistics
Matches: 127, Mismatches: 22, Indels: 34
0.69 0.12 0.19
Matches are distributed among these distances:
38 4 0.03
39 3 0.02
40 1 0.01
41 4 0.03
42 9 0.07
43 12 0.09
44 67 0.53
45 5 0.04
46 8 0.06
47 1 0.01
48 4 0.03
50 9 0.07
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (45 bp):
TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGCAGATTCT
Found at i:100734 original size:113 final size:113
Alignment explanation
Indices: 100536--100761 Score: 380
Period size: 113 Copynumber: 2.0 Consensus size: 113
100526 CCCAATATAG
* * * **
100536 TGGAGAAGCAGATTTCAGCCATTCGTCCTGTCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
*
100601 CAGATTCTTTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAA
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAA
100649 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
* *
100714 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAA
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAA
100762 ACTTACCTTC
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 105 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (113 bp):
TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAA
Found at i:101119 original size:264 final size:264
Alignment explanation
Indices: 100649--101777 Score: 1492
Period size: 264 Copynumber: 4.3 Consensus size: 264
100639 AGACGGTGAA
*
100649 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * * *
100714 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAAACTTACCTTCCCAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATAC
*
100779 AGTGTAGAAGCAGATTTAAGCCATTAG-CTCTATCACCCTAAGCAGTAGTCGAGTAGGTTGAAGA
131 AGTGGAGAAGCAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTCGAGTAGGTTGAAGA
* * * *
100843 TTGCAGATTCTGTCACCCTAAACAGTAGTGAAGGAGATTGAAGATAGTGAATCTTATCTTCCCAA
195 TTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
100908 TACAG
260 TACAG
* * ** *
100913 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACACTAAGCAATAGTGGAGTAGGTCAAAGACTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * * * *
100978 CAGATTCTGTCACCCTAAGTAGTAGTGGAGTAGATCGAATATGGCGAATCTTATCTTCCTAATAT
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATAC
* *
101043 AGTGGAGAAGCAGATTAAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCGAGAAGGTTGAAGAT
131 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCGAGTAGGTTGAAGAT
* * * ** *
101108 TGTAGATTCTGTCACCTTAAGCAGTAGTGGAGTGGATCGAAGATGGTGAATCGTATCTTCCCAAT
196 TGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
101173 ACAG
261 ACAG
* * * *
101177 TGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGAGGAGTAGGTTGAAGATTA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * * * *
101242 CAGATTCTTTCACCCTAAACAGTAGTGCAGCAGATCAAAAATGGTGAATCTTATCTTCCTAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATAC
* * *
101307 AGTCGAGAAGCAGATTTAAGCCATTAGTCCTATCAACCTAAGCAGTAGTGGAGTAGGTTGAAGAT
131 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCGAGTAGGTTGAAGAT
* * *
101372 TGCATATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAAG
196 TGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
*
101437 ATAG
261 ACAG
* * *
101441 TGGAGAAGGAAATTTAAGTCATTAGTCCTATCACCCTAAGC---AGT--AGT--G--G-AG--T-
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * *
101493 C-----CTGTCACCCTAAGCTGTAGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCTCAAGAT
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC-CTA-AT
* * * * *
101553 A-A-TGGAGAAGCTGATTTAAGCCACTAGTCCAATCTCCCTAAGTAGTAGT-GAAGTAGGTTGAA
129 ACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCG-AGTAGGTTGAA
* * *
101615 GATTGCAGATTCTTTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCC
193 GATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCC
*
101680 AATACAA
258 AATACAG
* * * * *
101687 TGGAGAAGCAAATTTAAGCTAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
101752 CAGATTCTGTCACCCTAAGCAGTAGT
66 CAGATTCTGTCACCCTAAGCAGTAGT
101778 CAGTGGAGAA
Statistics
Matches: 748, Mismatches: 95, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
245 1 0.00
246 196 0.26
247 3 0.00
248 3 0.00
249 3 0.00
251 3 0.00
252 1 0.00
253 1 0.00
254 2 0.00
255 2 0.00
256 2 0.00
257 1 0.00
258 1 0.00
259 4 0.01
261 2 0.00
264 522 0.70
265 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (264 bp):
TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATAC
AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCGAGTAGGTTGAAGAT
TGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
ACAG
Found at i:101500 original size:26 final size:26
Alignment explanation
Indices: 101464--101517 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
101454 TTAAGTCATT
101464 AGTCCTATCACCCTAAGCAGTAGTGG
1 AGTCCTATCACCCTAAGCAGTAGTGG
* *
101490 AGTCCTGTCACCCTAAGCTGTAGTGG
1 AGTCCTATCACCCTAAGCAGTAGTGG
101516 AG
1 AG
101518 CGGATCGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (26 bp):
AGTCCTATCACCCTAAGCAGTAGTGG
Found at i:101581 original size:114 final size:114
Alignment explanation
Indices: 101380--101602 Score: 322
Period size: 114 Copynumber: 2.0 Consensus size: 114
101370 ATTGCATATT
*
101380 CTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGA
1 CTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAATGGA
* * * *
101445 GAAGGAAATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTC
66 GAAGCAAATTTAAGCCACTAGTCCAATCACCCTAAGCAGTAGTGGAGTC
* * *
101494 CTGTCACCCTAAGCTGTAGTGGA-GCGGATCGAAGATGGTGAATCTTATCTTCTCAAGATAATGG
1 CTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAATGG
** * *
101558 AGAAGCTGATTTAAGCCACTAGTCCAATCTCCCTAAGTAGTAGTG
65 AGAAGCAAATTTAAGCCACTAGTCCAATCACCCTAAGCAGTAGTG
101603 AAGTAGGTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
114 94 0.98
115 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (114 bp):
CTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAATGGA
GAAGCAAATTTAAGCCACTAGTCCAATCACCCTAAGCAGTAGTGGAGTC
Found at i:101734 original size:132 final size:132
Alignment explanation
Indices: 101494--101777 Score: 426
Period size: 132 Copynumber: 2.2 Consensus size: 132
101484 TAGTGGAGTC
* * *
101494 CTGTCACCCTAAGCTGTAGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCTCAAGATAATGGA
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGACAATGGA
** * * * *
101559 GAAGCTGATTTAAGCCACTAGTCCAATCTCCCTAAGTAGTAGTGAAGTAGGTTGAAGATTGCAGA
66 GAAGCAAATTTAAGCCAATAGTCCAATCACCCTAAGCAGTAGTGAAGAAGGTTGAAGATTGCAGA
101624 TT
131 TT
* *
101626 CTTTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTT-TCCAATACAATGG
1 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCT-CAAGACAATGG
* * *
101690 AGAAGCAAATTTAAGCTAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAG
65 AGAAGCAAATTTAAGCCAATAGTCCAATCACCCTAAGCAGTAGTGAAGAAGGTTGAAGATTGCAG
101755 ATT
130 ATT
101758 CTGTCACCCTAAGCAGTAGT
1 CTGTCACCCTAAGCAGTAGT
101778 CAGTGGAGAA
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 1 0.01
132 135 0.99
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCTCAAGACAATGGA
GAAGCAAATTTAAGCCAATAGTCCAATCACCCTAAGCAGTAGTGAAGAAGGTTGAAGATTGCAGA
TT
Found at i:101768 original size:44 final size:43
Alignment explanation
Indices: 101716--101872 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 43
101706 TAATAGTCCC
101716 ATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTCT
1 ATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATT-CAGATTCT
* * *
101760 GTCACCCTAAGCAGTAGTCAGTGGAGAAGCAGATTTAAGCCATT-AG-TCCT
1 ATCACCCTAAGC---AGT-AGTGGAGAAG--G-TTGAAG--ATTCAGATTCT
* *
101810 ATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCT
1 ATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATT-CAGATTCT
* * *
101854 TTCACCCTAAACAGCAGTG
1 ATCACCCTAAGCAGTAGTG
101873 CGGCAGATCA
Statistics
Matches: 89, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
41 3 0.03
43 7 0.08
44 30 0.34
46 9 0.10
47 6 0.07
48 10 0.11
50 14 0.16
51 7 0.08
53 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (43 bp):
ATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTCAGATTCT
Found at i:101814 original size:94 final size:94
Alignment explanation
Indices: 101687--101863 Score: 282
Period size: 94 Copynumber: 1.9 Consensus size: 94
101677 TCCAATACAA
* *
101687 TGGAGAAGCAAATTTAAGCTAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAAATTTAAGCCAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTA
101752 CAGATTCTGTCACCCTAAGCAGTAGTCAG
66 CAGATTCTGTCACCCTAAGCAGTAGTCAG
* * * * *
101781 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTA
1 TGGAGAAGCAAATTTAAGCCAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTA
*
101846 CAGATTCTTTCACCCTAA
66 CAGATTCTGTCACCCTAA
101864 ACAGCAGTGC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (94 bp):
TGGAGAAGCAAATTTAAGCCAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTA
CAGATTCTGTCACCCTAAGCAGTAGTCAG
Found at i:101844 original size:50 final size:49
Alignment explanation
Indices: 101698--101844 Score: 117
Period size: 50 Copynumber: 3.1 Consensus size: 49
101688 GGAGAAGCAA
* * *
101698 ATTTAAGCTAATAGTCCCATCACCCTAAGCAGTAGTGGAGAAGGTTGAAG
1 ATTTAAGC-CATAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAG
* * * * * ** *
101748 A-TT--G-CAGA-TTCTGTCACCCTAAGCAGTAGT-CAGTGGAGAAGCAG
1 ATTTAAGCCATAGTCCTATCACCCTAAGCAGTAGTGGAGTAG-GTTGAAG
*
101792 ATTTAAGCCATTAGTCCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAG
1 ATTTAAGCCA-TAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAG
101842 ATT
1 ATT
101845 ACAGATTCTT
Statistics
Matches: 69, Mismatches: 20, Indels: 16
0.66 0.19 0.15
Matches are distributed among these distances:
43 3 0.04
44 24 0.35
45 4 0.06
47 2 0.03
48 2 0.03
49 3 0.04
50 27 0.39
51 4 0.06
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (49 bp):
ATTTAAGCCATAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAG
Found at i:101987 original size:105 final size:105
Alignment explanation
Indices: 101805--104790 Score: 5954
Period size: 105 Copynumber: 28.4 Consensus size: 105
101795 TAAGCCATTA
*
101805 GTCCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
101870 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
101910 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
101975 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102015 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102080 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102120 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102185 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102225 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102290 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102330 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102395 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102435 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102500 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102540 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102605 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102645 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102710 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102750 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102815 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102855 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
102920 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
102960 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103025 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103065 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103130 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103170 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103235 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103275 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103340 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103380 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103445 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103485 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103550 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103590 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103655 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103695 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103760 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103800 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103865 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
103905 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
103970 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104010 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104075 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104115 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104180 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104220 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104285 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104325 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104390 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104430 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104495 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104535 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104600 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
104640 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
104705 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
66 GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
*
104745 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGAT
1 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGAT
104791 GGAGAAGCAG
Statistics
Matches: 2879, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 2879 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (105 bp):
GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTTTCACCCTAAACAGCA
GTGCGGCAGATCAAAATGGTGAATCTTACCTTCCCAATAC
Found at i:105026 original size:132 final size:132
Alignment explanation
Indices: 104790--106333 Score: 2050
Period size: 132 Copynumber: 11.6 Consensus size: 132
104780 AGATTATAGA
104790 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
** * * *
104855 CAGGCTCTGTCACCCTAACCAGTAGTGGAGCAGATCGAAGATGGAGAATCTTTTCTTCCCAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
*
104920 AA
131 AG
* * ** * * *
104922 TGGAGAAGCAGATTTCAGCCATTCGTCCGGTCACCCTAAGCAGTAGTAGAGTCGGTTGAAGAGTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * *
104987 CAGATTCTTTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAACAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
*
105052 AA
131 AG
*
105054 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * * * * * *
105119 TAGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCAAAGATGGTGAAACTTATCTTCTCAAGAT
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
105184 AG
131 AG
* * * * * * *
105186 TGGAGAAGAAGATTTAAGCTATTAATCCAATCTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
** * * * *
105251 CAGATTCTGTCACCCTAAATAGTAGTGGAGAAGATCGAATATGATGAATCTTACCTTCCCAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
105316 AG
131 AG
* * * *
105318 TGGAGAAGCAAATTTAAGCCATTAGTCCTATCACCCGAAGCAATAGTGGAGTAGGTTGATGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* *
105383 AAGATTCTGTCACCCTAAAG-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTAACTTCCCAATA
66 CAGATTCTGTCACCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
105447 CAG
130 CAG
* * * *
105450 TGGAGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* ** * *
105515 CAGATTCTGTTATTCTAAACAGTAGTGGAGCAGATCGAATATGATGAATCCTTNGAATCTTATCT
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG-A-A-GATG-----GT-GAATCTTATCT
*
105580 TCCCAATACAA
122 TCCCAATACAG
* * * *
105591 TGGAGAAGCAGATTTAAGCTATTAGTCCCATCACCCTAAGTAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * *
105656 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
105721 AG
131 AG
105723 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
*
105788 CAGATTCTGTCACCCTAAGCAGTAGT-GATGCAGACCGAAGATGGTGAATCTTATCTTCCCAATA
66 CAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
105852 CAG
130 CAG
*
105855 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * * * *
105920 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAAACTTATCTTCTCAAGAT
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
105985 AG
131 AG
* * * * * *
105987 TGGAGAAGAATATTTAAGCTATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTG
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
** * * * * *
106052 CAGATAATGTCACCCTAAACAGTAGTGGAGCAGATTGAATATGATGAATCTTACCTTCCCAATAC
66 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
106117 AG
131 AG
* * ** * * *
106119 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACACTAAGAAGTAGTGGAGTAGGTCAAATAATA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
* * ** *
106184 CAGATTCTGTCACCCTAA-CTAGTAGTGGAGCAGATTGAATATGGCAAATCTTATCTTCCTAATA
66 CAGATTCTGTCACCCTAAGC-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
*
106248 TAG
130 CAG
* * ** * * *
106251 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACACTAAGAAGTAGTGGAGTAGGTCAAATAATA
1 TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
106316 CAGATTCTGTCACCCTAA
66 CAGATTCTGTCACCCTAA
106334 CTAGTAG
Statistics
Matches: 1242, Mismatches: 156, Indels: 28
0.87 0.11 0.02
Matches are distributed among these distances:
131 5 0.00
132 1111 0.89
133 6 0.00
134 1 0.00
135 4 0.00
138 3 0.00
139 1 0.00
140 2 0.00
141 109 0.09
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (132 bp):
TGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTG
CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
AG
Found at i:105803 original size:44 final size:44
Alignment explanation
Indices: 105750--105961 Score: 148
Period size: 44 Copynumber: 4.8 Consensus size: 44
105740 GCCATTAGTC
* *
105750 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* ** ** *
105794 CTGTCACCCTAAGCAGTAGT-GATGCAGACCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGATTGCAGATT
* * * * * * *
105837 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATT
* *
105882 CTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
* * *
105926 CTGTCACCCTAAGCAGTAGTGGAGCGGATCGAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
105962 GGTGAAACTT
Statistics
Matches: 122, Mismatches: 34, Indels: 24
0.68 0.19 0.13
Matches are distributed among these distances:
41 3 0.02
43 28 0.23
44 70 0.57
45 17 0.14
46 2 0.02
47 1 0.01
48 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATT
Done.