Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 126 of 290
Found at i:42844523 original size:54 final size:54
Alignment explanation
Indices: 42844256--42844595 Score: 357
Period size: 54 Copynumber: 6.3 Consensus size: 54
42844246 TTAGTTTACC
* * * *
42844256 AAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
* * *
42844310 AAATCACCAAAATACCCCTGGTTTGTAAAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
42844363 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TTGATTTATA
* * * *
42844417 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTATA
* * * *
42844471 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCC-TGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTGATTTATA
** *** *** * * *
42844525 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGATTTATA
*
42844579 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
42844596 TTAATTTATA
Statistics
Matches: 245, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
53 57 0.23
54 179 0.73
55 9 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA
Found at i:42844531 original size:27 final size:27
Alignment explanation
Indices: 42844256--42844541 Score: 358
Period size: 27 Copynumber: 10.6 Consensus size: 27
42844246 TTAGTTTACC
*
42844256 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
42844283 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
42844310 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
42844337 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
42844363 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
42844390 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
42844417 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
42844444 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
42844471 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
42844498 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
42844525 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
42844542 TCGACCTGTA
Statistics
Matches: 224, Mismatches: 34, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:42844552 original size:81 final size:80
Alignment explanation
Indices: 42844256--42844595 Score: 310
Period size: 81 Copynumber: 4.2 Consensus size: 80
42844246 TTAGTTTACC
* * * * * * * * *
42844256 AAATTAACAAAATACCCCTGGTTTGTAAAATTACTAAAATGCCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
*
42844321 ATACCCCTGGTTTGTA
65 ATACCCCTAGTTTGTA
* * ** *
42844337 AAATTACC-AAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCC-GATTTGTAAAATTATC-AA
* * *
42844400 AATACCCTTTGTTTATA
64 AATACCCCTAGTTTGTA
* *
42844417 AAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCGA-TTTGTAAAATTATCAA
42844481 AATACCCCTAGTTTGTA
64 AATACCCCTAGTTTGTA
* * ** ** **
42844498 AAATTACCAAAATATCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
* *
42844563 ATA-CCCTCGACTTGTA
65 ATACCCCTAG-TTTGTA
*
42844579 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
42844596 TTAATTTATA
Statistics
Matches: 214, Mismatches: 36, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.00
80 70 0.33
81 139 0.65
82 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGATTTGTAAAATTATCAAAA
TACCCCTAGTTTGTA
Found at i:42844594 original size:27 final size:27
Alignment explanation
Indices: 42844256--42844596 Score: 259
Period size: 27 Copynumber: 12.7 Consensus size: 27
42844246 TTAGTTTACC
* *
42844256 AAATTAACAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
42844283 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
42844310 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
42844337 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
42844363 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
42844390 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
42844417 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
42844444 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
42844471 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
42844498 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
** **
42844525 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
42844552 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
42844579 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
42844597 TAATTTATAG
Statistics
Matches: 263, Mismatches: 39, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.10
27 232 0.88
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:42844662 original size:27 final size:27
Alignment explanation
Indices: 42844632--42844738 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 27
42844622 CTCAATTTAC
* *
42844632 AAAATTATCGAAATACCACTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
42844659 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
42844686 AGAATTACCGAAATACCCGTATAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
42844713 AGAATTATCGCAATACCCCTGTAGGG
1 AAAATTACCGAAATACCCCTGTAGGG
42844739 CTGGGTGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:42844893 original size:6 final size:6
Alignment explanation
Indices: 42844867--42844932 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
42844857 TTTCTATTAC
* * * *
42844867 CTGATA CTGATT CTAATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
42844916 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
42844933 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:42846915 original size:27 final size:27
Alignment explanation
Indices: 42846884--42847169 Score: 360
Period size: 27 Copynumber: 10.6 Consensus size: 27
42846874 TTAGTTTACT
42846884 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
42846911 AAATTACTAAAATA-CCCTCGGTTTATA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
42846938 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
42846965 AAATTACCAAAATACTCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
42846992 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
42847019 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
42847046 AAATTACCAAAATACACCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
42847073 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
42847100 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
42847127 AAATTACCAAAATATCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
42847154 AAATTA-CTAAATACCC
1 AAATTACCAAAATACCC
42847170 TCGACCTATA
Statistics
Matches: 221, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 11 0.05
27 206 0.93
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:42847249 original size:27 final size:27
Alignment explanation
Indices: 42846884--42847249 Score: 273
Period size: 27 Copynumber: 13.6 Consensus size: 27
42846874 TTAGTTTACT
*
42846884 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
42846911 AAATTACTAAAATACCCTCGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
42846938 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * **
42846965 AAATTACCAAAATACTCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
42846992 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
42847019 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
42847046 AAATTACCAAAATACACCT-GGTTTATA
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
42847073 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
42847100 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
42847127 AAATTACCAAAATA-TCTCTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* ** *
42847154 AAATTA-CTAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** ** *
42847180 AAATTATTGAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
42847207 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
42847234 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
42847250 ATTGATTTAC
Statistics
Matches: 281, Mismatches: 43, Indels: 30
0.79 0.12 0.08
Matches are distributed among these distances:
26 21 0.07
27 256 0.91
28 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:42847303 original size:27 final size:27
Alignment explanation
Indices: 42846909--42847304 Score: 135
Period size: 27 Copynumber: 14.7 Consensus size: 27
42846899 CCCTGGTTTG
** **
42846909 TAAAATTACTAAAATACCCTCGGTTTA
1 TAAAATTACCGAAATACCCTCGACTTA
* * ** *
42846936 TAAAATCACCAAAATACCC-CTGGTTTG
1 TAAAATTACCGAAATACCCTC-GACTTA
* * * **
42846963 TAAAATTACCAAAATACTCTTGGTTTA
1 TAAAATTACCGAAATACCCTCGACTTA
* * * * *
42846990 CAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCGAAATACCCTCGA-CTTA
** * *
42847017 TAAAATTACTAAAATACCCTTTG-TTTA
1 TAAAATTACCGAAATACCC-TCGACTTA
* **
42847044 TAAAATTACCAAAATACACCT-GGTTTA
1 TAAAATTACCGAAATAC-CCTCGACTTA
* ** *
42847071 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCGAAATACCCTC-GACTTA
* * * * *
42847098 TAAAATTATCAAAATACCC-CTAGTTTG
1 TAAAATTACCGAAATACCCTCGA-CTTA
* * * *
42847125 TAAAATTACCAAAATA-TCTCTGATTTG
1 TAAAATTACCGAAATACCCTC-GACTTA
* * *
42847152 TGAAATTA-CTAAATACCCTCGACCTA
1 TAAAATTACCGAAATACCCTCGACTTA
** *
42847178 TAAAATTATTGAAATACCCTCGACCTA
1 TAAAATTACCGAAATACCCTCGACTTA
*** *
42847205 TAAAATTATTAAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGACTTA
* * *
42847232 TAAAATTACC-AAAGTACCATTGATTTA
1 TAAAATTACCGAAA-TACCCTCGACTTA
* * ***
42847259 CAGAATTACCGTTTTACCCTCGACTTA
1 TAAAATTACCGAAATACCCTCGACTTA
*
42847286 CAAAATTACCGAAATACCC
1 TAAAATTACCGAAATACCC
42847305 CTGTAGGGTA
Statistics
Matches: 297, Mismatches: 56, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
26 24 0.08
27 270 0.91
28 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGACTTA
Found at i:42847319 original size:27 final size:27
Alignment explanation
Indices: 42847289--42847600 Score: 473
Period size: 27 Copynumber: 11.6 Consensus size: 27
42847279 CGACTTACAA
42847289 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
42847316 AATTACCGGAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
42847343 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
42847370 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
42847397 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
42847424 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
42847451 AATTACCGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
42847478 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
42847505 AATTACCGAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
42847532 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
42847559 AATTACTGAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
42847586 AATTACC-AAGATACC
1 AATTACCGAA-ATACC
42847601 TTGTGGGGTA
Statistics
Matches: 258, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 256 0.99
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:42848097 original size:22 final size:22
Alignment explanation
Indices: 42848045--42848109 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
42848035 TTAAAGCCTT
* *
42848045 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
42848067 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
42848089 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
42848110 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:42848299 original size:27 final size:27
Alignment explanation
Indices: 42848269--42848343 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
42848259 TTCTGTTAAG
* *
42848269 TGGCTTTGCCACATTATCTGTTTCTGA
1 TGGCTATGCCACAATATCTGTTTCTGA
*
42848296 TGGCTATGCCACAAATATCTG-TTCTGG
1 TGGCTATGCCAC-AATATCTGTTTCTGA
*
42848323 TGGCTCTGCCACAATATCTGT
1 TGGCTATGCCACAATATCTGT
42848344 ATCTAGTGAC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.19
27 27 0.64
28 7 0.17
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (27 bp):
TGGCTATGCCACAATATCTGTTTCTGA
Found at i:42848362 original size:27 final size:26
Alignment explanation
Indices: 42848275--42848369 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 26
42848265 TAAGTGGCTT
* * *
42848275 TGCCACATTATCTGTTTCT-GATGGCTA
1 TGCCACAATATCTG-TTCTAG-TGACTC
* *
42848302 TGCCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTAGTGACTC
*
42848329 TGCCACAATATCTGTATCTAGTGACTT
1 TGCCACAATATCTGT-TCTAGTGACTC
* *
42848356 TGTCACAACATCTG
1 TGCCACAATATCTG
42848370 ATAACTGAGC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.16
27 41 0.71
28 8 0.14
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTAGTGACTC
Found at i:42848552 original size:31 final size:31
Alignment explanation
Indices: 42848506--42848616 Score: 127
Period size: 31 Copynumber: 3.5 Consensus size: 31
42848496 TTGCATTCAC
*
42848506 ATTCTGATTTTTGATTCTGTTTCCTGATACTA
1 ATTCTGA-TTCTGATTCTGTTTCCTGATACTA
* * * *
42848538 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTTCCTGATACTA
*
42848569 ATTCTGATTCTGATTCTGATT-CTG-TCACTTA
1 ATTCTGATTCTGATTCTGTTTCCTGAT-AC-TA
42848600 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
42848617 AATTCTAGTT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.01
30 5 0.07
31 56 0.81
32 7 0.10
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTTCCTGATACTA
Found at i:42848569 original size:6 final size:6
Alignment explanation
Indices: 42848506--42848631 Score: 87
Period size: 6 Copynumber: 20.3 Consensus size: 6
42848496 TTGCATTCAC
* * * * *
42848506 ATTCTG ATTTTTG ATTCTG TTTCCTG ATACTA ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
42848555 ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACTTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
*
42848606 ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
42848632 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
5 5 0.05
6 71 0.76
7 14 0.15
8 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:42861027 original size:42 final size:43
Alignment explanation
Indices: 42860927--42861095 Score: 125
Period size: 43 Copynumber: 4.0 Consensus size: 43
42860917 AGCTCGTACA
* ***
42860927 ATGCCAACGTCCCAAAC-GAGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAAACAG-GGTCTTACACAAAATCAAATATCG
* * * *
42860970 ATGCCACTATCCCAAACAGGGTCTTACACAAAATTATATA-CG
1 ATGCCAATGTCCCAAACAGGGTCTTACACAAAATCAAATATCG
* *
42861012 ATGCCAATGTCCCAAACATGGTCTTACTCATAAATCTCAAAT-T-G
1 ATGCCAATGTCCCAAACAGGGTCTTACACA-AAA--TCAAATATCG
* * * *
42861056 ATGCCAACGTCCC--AGAGTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAAACAG-GGTCTTACACAAAATCAAATAT
42861096 TAGAATCCTA
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
40 5 0.05
41 1 0.01
42 33 0.33
43 42 0.42
44 14 0.14
45 4 0.04
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACAGGGTCTTACACAAAATCAAATATCG
Found at i:42868344 original size:48 final size:48
Alignment explanation
Indices: 42868290--42868403 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
42868280 ATCGATATGT
* * *
42868290 GATCCCATGTAAGACCATGTCTGGGACATGGCATTTGCATCGATCTAC
1 GATCCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTAC
42868338 GATCCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTAC
1 GATCCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTAC
42868386 GATCCCATGTAAGACCAT
1 GATCCCATGTAAGACCAT
42868404 ATCCGAGATA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTAGGACATAGCATTGGCATCGATCTAC
Found at i:42868420 original size:48 final size:47
Alignment explanation
Indices: 42868290--42868425 Score: 166
Period size: 48 Copynumber: 2.8 Consensus size: 47
42868280 ATCGATATGT
* * * *
42868290 GATCCCATGTAAGACCATGTCTGGGACATGGCATTTGCATCGATCTAC
1 GATCCCATGTAAGACCATGTCCGAGATA-GGCATTGGCATCGATCTAC
* *
42868338 GATCCCATGTAAGACCATGTCTAGGACATA-GCATTGGCATCGATCTAC
1 GATCCCATGTAAGACCATGTC--CGAGATAGGCATTGGCATCGATCTAC
*
42868386 GATCCCATGTAAGACCATATCCGAGATACGGCATTGGCAT
1 GATCCCATGTAAGACCATGTCCGAGATA-GGCATTGGCAT
42868426 TCTACCATGT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
46 5 0.07
48 68 0.89
50 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCCGAGATAGGCATTGGCATCGATCTAC
Found at i:42878806 original size:48 final size:47
Alignment explanation
Indices: 42878700--42879110 Score: 239
Period size: 46 Copynumber: 8.7 Consensus size: 47
42878690 TTATTTGTGT
* * *
42878700 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TATTATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACATTA-GATGAGA
*
42878746 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT-AGATGAGA
* * * * * *
42878794 ACTAATGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-TAGATG-AGA
* ** *
42878840 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATTAGATGAGA
* * *
42878885 TC-AGTGTAAGACCATGTCTGGGACATGGTATCGACACGTATAGA-G-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA--T-TAGATGAGA
* * *
42878932 G-TCAATGTAAGACCATGTCTGGGACAAGGCATCGGCACGAATATG-TGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-ATTA-GATGAGA
* * * *
42878982 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGA--T-GAGA
** * *
42879031 G-TCAGTGTAAGACCATGTCTGAAACATGGGATCGAC-TT-GATGGTTGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGAT-G-AGA
*
42879078 G-TCAGTGTAAGACCATGTCTGGGACATGTCATC
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATC
42879111 CCTATGTTTG
Statistics
Matches: 289, Mismatches: 47, Indels: 57
0.74 0.12 0.15
Matches are distributed among these distances:
44 9 0.03
45 17 0.06
46 70 0.24
47 63 0.22
48 57 0.20
49 39 0.13
50 32 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAGATGAGA
Found at i:42879058 original size:49 final size:46
Alignment explanation
Indices: 42878884--42879098 Score: 144
Period size: 48 Copynumber: 4.5 Consensus size: 46
42878874 TACAAGATGT
** * * ** *
42878884 GTCAGTGTAAGACCATGTCTGGGACATGGTATCGACACGTATAGAGGT
1 GTCAGTGTAAGACCATGTCTGAAACATGGCATCGACTCG-AT-GTTGA
* ** * * * *
42878932 GTCAATGTAAGACCATGTCTGGGACAAGGCATCGGCACGAATATGTGA
1 GTCAGTGTAAGACCATGTCTGAAACATGGCATCGACTCG-ATGT-TGA
* ** *
42878980 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-TTCGATA
1 G-TC-AGTGTAAGACCATGTCTGAAACATGGCATC-GACTCGATGTT-G--A
* *
42879031 GTCAGTGTAAGACCATGTCTGAAACATGGGATCGACTTGATGGTTGA
1 GTCAGTGTAAGACCATGTCTGAAACATGGCATCGACTCGAT-GTTGA
42879078 GTCAGTGTAAGACCATGTCTG
1 GTCAGTGTAAGACCATGTCTG
42879099 GGACATGTCA
Statistics
Matches: 138, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
47 22 0.16
48 46 0.33
49 31 0.22
50 33 0.24
51 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GTCAGTGTAAGACCATGTCTGAAACATGGCATCGACTCGATGTTGA
Found at i:42890272 original size:27 final size:27
Alignment explanation
Indices: 42890138--42890274 Score: 202
Period size: 27 Copynumber: 5.1 Consensus size: 27
42890128 GTATTACAGA
* * *
42890138 CATTTTACCCTATAGAGGTATTTCGGC
1 CATTTTACCCTATGGGGGTATTTCGGT
*
42890165 CATTTTACCCTATGGGGGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
42890192 CATTTTACCCCATGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
42890219 CATTTTACACTATGAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
42890246 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
42890273 CA
1 CA
42890275 CCATTTCGGC
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCGGT
Found at i:42896552 original size:16 final size:16
Alignment explanation
Indices: 42896531--42896562 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
42896521 AGTTTCCTTG
42896531 TTTTGTTTTATGGCAT
1 TTTTGTTTTATGGCAT
*
42896547 TTTTGTTTTCTGGCAT
1 TTTTGTTTTATGGCAT
42896563 GTATAGGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.19, T:0.62
Consensus pattern (16 bp):
TTTTGTTTTATGGCAT
Found at i:42912304 original size:50 final size:48
Alignment explanation
Indices: 42912187--42912323 Score: 202
Period size: 49 Copynumber: 2.8 Consensus size: 48
42912177 ATGGAGTAAG
* * *
42912187 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTC
* *
42912235 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATTC
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CATATTC
42912286 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
42912324 CCACAATAAC
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
48 1 0.01
49 36 0.45
50 36 0.45
51 7 0.09
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATATTC
Found at i:42915014 original size:14 final size:15
Alignment explanation
Indices: 42914990--42915018 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
42914980 ATCAAAATTT
42914990 ATATCACATTTAAGA
1 ATATCACATTTAAGA
42915005 ATAT-ACATTTAAGA
1 ATATCACATTTAAGA
42915019 GTTTTAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (15 bp):
ATATCACATTTAAGA
Found at i:42919713 original size:22 final size:22
Alignment explanation
Indices: 42919688--42919730 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
42919678 TTATAGCATG
*
42919688 CTACGCTCCTTGTCCGGCACTA
1 CTACGCTCCTTGTCCGACACTA
42919710 CTACGCTCCTTGTCCGACACT
1 CTACGCTCCTTGTCCGACACT
42919731 CTTTGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.42, G:0.16, T:0.28
Consensus pattern (22 bp):
CTACGCTCCTTGTCCGACACTA
Found at i:42933588 original size:33 final size:33
Alignment explanation
Indices: 42933543--42933605 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
42933533 GATTAAAGAG
*
42933543 TAAATTAGTCATTTCTATTAAATATTTTTTTAA
1 TAAATTAATCATTTCTATTAAATATTTTTTTAA
42933576 TAAATTAATCATTTCTATTAAATATTTTTT
1 TAAATTAATCATTTCTATTAAATATTTTTT
42933606 CCATTTGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (33 bp):
TAAATTAATCATTTCTATTAAATATTTTTTTAA
Found at i:42937409 original size:19 final size:19
Alignment explanation
Indices: 42937385--42937422 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
42937375 TTGAGATTGC
*
42937385 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
42937404 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
42937423 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:42939569 original size:19 final size:19
Alignment explanation
Indices: 42939547--42939590 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
42939537 CCCATGCATT
42939547 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
42939566 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
42939585 TGCATT
1 TGCATT
42939591 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:42944581 original size:47 final size:47
Alignment explanation
Indices: 42944502--42945000 Score: 890
Period size: 47 Copynumber: 10.6 Consensus size: 47
42944492 TATTTGAATA
42944502 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944551 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944598 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944645 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944692 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944739 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944786 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
42944833 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
42944880 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
42944927 AATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
42944974 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
42945001 TCCCGAAGGG
Statistics
Matches: 436, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
47 424 0.97
49 12 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:42947754 original size:20 final size:21
Alignment explanation
Indices: 42947681--42947756 Score: 61
Period size: 20 Copynumber: 3.8 Consensus size: 21
42947671 GGGTACCAAA
*
42947681 GTGCAATCAAGGGCACC-GAC
1 GTGCATTCAAGGGCACCAGAC
* *
42947701 GTGCATTCAAGGGCACGA-AT
1 GTGCATTCAAGGGCACCAGAC
* *
42947721 TTGC-TGTCATGGGCACCAGA-
1 GTGCAT-TCAAGGGCACCAGAC
*
42947741 GTGCATTCAGGGGCAC
1 GTGCATTCAAGGGCAC
42947757 AGTTGTGCAA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.02
20 41 0.93
21 2 0.05
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18
Consensus pattern (21 bp):
GTGCATTCAAGGGCACCAGAC
Found at i:42949179 original size:13 final size:14
Alignment explanation
Indices: 42949153--42949185 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
42949143 TTAATATTTC
42949153 TTTTATCTTATTAT
1 TTTTATCTTATTAT
42949167 TTTTATCTT-TTAT
1 TTTTATCTTATTAT
*
42949180 ATTTAT
1 TTTTAT
42949186 TTTACAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATCTTATTAT
Found at i:42949743 original size:18 final size:17
Alignment explanation
Indices: 42949710--42949742 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
42949700 TATTCCTGCA
42949710 ATATTTATATTATTTTG
1 ATATTTATATTATTTTG
42949727 ATATTATATATT-TTTT
1 ATATT-TATATTATTTT
42949743 TAAATTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATATTTATATTATTTTG
Found at i:42950602 original size:18 final size:17
Alignment explanation
Indices: 42950571--42950608 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
42950561 ATTTTACTTA
42950571 TTTTAAAGATGTTTTATT
1 TTTTAAAGATGTTTT-TT
42950589 TTTTATAAGA-GTTTTTT
1 TTTTA-AAGATGTTTTTT
42950606 TTT
1 TTT
42950609 CATGTTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (17 bp):
TTTTAAAGATGTTTTTT
Found at i:42957727 original size:47 final size:47
Alignment explanation
Indices: 42957578--42957752 Score: 176
Period size: 47 Copynumber: 3.7 Consensus size: 47
42957568 CACTTGTGTA
* *
42957578 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATATG
* * * * *
42957626 TGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAAATGAT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGAT-ATG
** * * *
42957672 AGTTAGTGTATGACCATGTCTGGGACATGGCTTCGACTTGAGATATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATATG
* *
42957719 AGCCAGTGTAAGACTATGTCTGGGACACGGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
42957753 AGCACCTTAC
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 23 0.23
47 59 0.58
48 18 0.18
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATATG
Found at i:42965402 original size:49 final size:49
Alignment explanation
Indices: 42965134--42965845 Score: 1087
Period size: 49 Copynumber: 14.8 Consensus size: 49
42965124 CCCTTCGGGA
* * *
42965134 CTTATCACAT-T-TATACAC-TTCTACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTC-ACATTCATCACATCGGCCATTAGGC
* * *
42965181 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
42965228 CTTATCTC--ATATATGCA-TGTTCACATTCATCAAATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
42965275 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
42965322 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
42965369 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965418 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965465 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965514 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965563 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965612 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965710 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965759 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
42965808 CTTATCACATATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATATACACTTTCACATTCATCACATC
42965846 ATGTACAGAC
Statistics
Matches: 637, Mismatches: 19, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 216 0.34
48 3 0.00
49 415 0.65
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:42977470 original size:20 final size:20
Alignment explanation
Indices: 42977441--42977493 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
42977431 ACGGGTGGGA
42977441 CACACGGGCGTGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
*
42977461 CACACAGGCGTGTCCCTAAG
1 CACACGGGCGTGTCCCTAAG
42977481 CACACGGGCGTGT
1 CACACGGGCGTGT
42977494 GCTTTGCCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (20 bp):
CACACGGGCGTGTCCCTAAG
Found at i:42991303 original size:10 final size:10
Alignment explanation
Indices: 42991288--42991337 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
42991278 GTCCAAGTGC
42991288 CATTTTATCT
1 CATTTTATCT
*
42991298 CATTTTATTT
1 CATTTTATCT
42991308 CATTTTATCT
1 CATTTTATCT
**
42991318 TGTTTTATCT
1 CATTTTATCT
*
42991328 CTTTTTATCT
1 CATTTTATCT
42991338 TATATTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.16, C:0.16, G:0.02, T:0.66
Consensus pattern (10 bp):
CATTTTATCT
Found at i:42991338 original size:20 final size:20
Alignment explanation
Indices: 42991288--42991345 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
42991278 GTCCAAGTGC
* *
42991288 CATTTTATCTCATTTTATTT
1 CATTTTATCTTATTTTATCT
*
42991308 CATTTTATCTTGTTTTATCT
1 CATTTTATCTTATTTTATCT
* *
42991328 CTTTTTATCTTATATTAT
1 CATTTTATCTTATTTTAT
42991346 ATGACTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.02, T:0.66
Consensus pattern (20 bp):
CATTTTATCTTATTTTATCT
Found at i:42997753 original size:62 final size:64
Alignment explanation
Indices: 42997635--42997761 Score: 195
Period size: 62 Copynumber: 2.0 Consensus size: 64
42997625 AGAAATGGTA
* * *
42997635 AAAATGGAGAAATGGGAAACATTTGGAAATGATTATGATTTTCTACAAAATTAAAATGAAAATG
1 AAAATGGAGAAATGGGAAACATTTGGAAATGAATATGAGTTTCTACAAAATGAAAATGAAAATG
* *
42997699 AAAATGGAGAAAT-GGAATCATTTGGAAATGAATATG-GTTTCTCCAAAATGAAAATGAAAATG
1 AAAATGGAGAAATGGGAAACATTTGGAAATGAATATGAGTTTCTACAAAATGAAAATGAAAATG
42997761 A
1 A
42997762 CCTGGAAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
62 24 0.41
63 21 0.36
64 13 0.22
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.27
Consensus pattern (64 bp):
AAAATGGAGAAATGGGAAACATTTGGAAATGAATATGAGTTTCTACAAAATGAAAATGAAAATG
Found at i:42998298 original size:110 final size:110
Alignment explanation
Indices: 42998095--42998300 Score: 256
Period size: 110 Copynumber: 1.9 Consensus size: 110
42998085 AGAGCGACAG
* * *
42998095 AAAACCCTAGTATTATTAACTAGGGTTGTGGCCTCCTATACTTCCAGTTAGACTAGGAGTTCATT
1 AAAACCCTAATATTATTAACTAGGGTTGTGGCCTCCTATACTACCAGTTAAACTAGGAGTTCATT
42998160 TTCTTAGTTGAAATAAACTTCTAAAATTCAATAAAGGTGGGATGA
66 TTCTTAGTTGAAATAAACTTCTAAAATTCAATAAAGGTGGGATGA
*** **
42998205 AAAACCCTAATATTATTAACTAGGGTTGCT-GCC-CCGTATACTACTTTTTAAACTAGGAGTTTG
1 AAAACCCTAATATTATTAACTAGGGTTG-TGGCCTCC-TATACTACCAGTTAAACTAGGAGTTCA
* * * *
42998268 TTTT-TCTAGTTGGAATAAATTTTTATAATTCAA
64 TTTTCT-TAGTTGAAATAAACTTCTAAAATTCAA
42998301 CAAGGGTTCT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
109 3 0.04
110 77 0.95
111 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (110 bp):
AAAACCCTAATATTATTAACTAGGGTTGTGGCCTCCTATACTACCAGTTAAACTAGGAGTTCATT
TTCTTAGTTGAAATAAACTTCTAAAATTCAATAAAGGTGGGATGA
Found at i:43000622 original size:19 final size:18
Alignment explanation
Indices: 43000578--43000625 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
43000568 ATTCTCATTT
43000578 TCTTCTACTTTTTTTTTGC
1 TCTTCT-CTTTTTTTTTGC
* *
43000597 ACTTTCTCTTTTTTTCTTTC
1 TC-TTCTCTTTTTTT-TTGC
43000617 TCTTCTCTT
1 TCTTCTCTT
43000626 GTTATATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.04, C:0.25, G:0.02, T:0.69
Consensus pattern (18 bp):
TCTTCTCTTTTTTTTTGC
Found at i:43006549 original size:72 final size:72
Alignment explanation
Indices: 43006432--43006575 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
43006422 TATTTCTACC
43006432 CATATATCATGCTAGGGTTCATGTTTAGAAAATTACCCATACATGAGATGTTCGTGTTTTGATGA
1 CATATATCATGCTAGGGTTCATGTTTAGAAAATTACCCATACATGAGATGTTCGTGTTTTGATGA
43006497 TTTATGA
66 TTTATGA
*
43006504 CATATATCATGCTAGGGTTCATGTTTAGAAAATTACCCATACATGAGATGTTTGTGTTTTGATGA
1 CATATATCATGCTAGGGTTCATGTTTAGAAAATTACCCATACATGAGATGTTCGTGTTTTGATGA
43006569 TTTATGA
66 TTTATGA
43006576 AGGAATACGA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (72 bp):
CATATATCATGCTAGGGTTCATGTTTAGAAAATTACCCATACATGAGATGTTCGTGTTTTGATGA
TTTATGA
Found at i:43010920 original size:17 final size:17
Alignment explanation
Indices: 43010898--43010933 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
43010888 ATTCACAAAC
43010898 TAAGAATTTTGTATTTT
1 TAAGAATTTTGTATTTT
43010915 TAAGAATTTTGTATTTT
1 TAAGAATTTTGTATTTT
43010932 TA
1 TA
43010934 CCCAATAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (17 bp):
TAAGAATTTTGTATTTT
Found at i:43011421 original size:24 final size:25
Alignment explanation
Indices: 43011393--43011442 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
43011383 GTAAAATATT
*
43011393 TTTATTTTT-TTAATATTAATATAA
1 TTTATTTTTATTAATACTAATATAA
43011417 TTTATTTTTAATTAATACTAATATAA
1 TTTATTTTT-ATTAATACTAATATAA
43011443 ATGTAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.39
26 14 0.61
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTATTTTTATTAATACTAATATAA
Found at i:43013448 original size:16 final size:17
Alignment explanation
Indices: 43013420--43013452 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
43013410 AAATAGATTT
43013420 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
43013437 TTAATT-AAAATTTTAA
1 TTAATTAAAAATTTTAA
43013453 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:43013680 original size:17 final size:18
Alignment explanation
Indices: 43013641--43013683 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
43013631 AGGTTTGAAA
43013641 ATTTTAATTAATTAAATTT
1 ATTTTAATTAA-TAAATTT
*
43013660 -TTTTAATTAA-GAATTT
1 ATTTTAATTAATAAATTT
43013676 ATTTTAAT
1 ATTTTAAT
43013684 CCCATTTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.23
17 7 0.32
18 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTTTAATTAATAAATTT
Found at i:43022707 original size:31 final size:31
Alignment explanation
Indices: 43022669--43022731 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
43022659 GTAAAGTTTG
43022669 ACAGTTAAAGGAATCGTATTAACACATATAT
1 ACAGTTAAAGGAATCGTATTAACACATATAT
43022700 ACAGTTAAAGGAATCGTATTAACACATATAT
1 ACAGTTAAAGGAATCGTATTAACACATATAT
43022731 A
1 A
43022732 AAATACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.29
Consensus pattern (31 bp):
ACAGTTAAAGGAATCGTATTAACACATATAT
Found at i:43032965 original size:6 final size:7
Alignment explanation
Indices: 43032931--43032970 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
43032921 TTGCCACATC
43032931 ATAAAAA
1 ATAAAAA
* *
43032938 ATTCAACA
1 A-TAAAAA
43032946 ATAAAAA
1 ATAAAAA
43032953 ATAAAAA
1 ATAAAAA
43032960 ATAAAAA
1 ATAAAAA
43032967 ATAA
1 ATAA
43032971 TTTCTAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:43044251 original size:52 final size:52
Alignment explanation
Indices: 43044173--43044275 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
43044163 TTGTAAAAAG
* *
43044173 GCGCAGAAGCCAATGAGCACCAAACCTATATCCAATCAAGATACTCTGTCAA
1 GCGCAGAAGCCAACGAGCACCAAACCTATATCCAATCAAGACACTCTGTCAA
43044225 GCGCAGAAGCCAACGAGCACCAAACCTATATCCAATCAAGACACTCTGTCA
1 GCGCAGAAGCCAACGAGCACCAAACCTATATCCAATCAAGACACTCTGTCA
43044276 GTCCTTTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.38, C:0.31, G:0.16, T:0.16
Consensus pattern (52 bp):
GCGCAGAAGCCAACGAGCACCAAACCTATATCCAATCAAGACACTCTGTCAA
Found at i:43047401 original size:40 final size:40
Alignment explanation
Indices: 43047348--43047442 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
43047338 CGGATGTAAC
* *
43047348 AACCAGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
43047388 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
43047428 AACCCGCACGAATGC
1 AACCCGCACGAATGC
43047443 TATGCACATA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:43048541 original size:32 final size:32
Alignment explanation
Indices: 43048502--43048565 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
43048492 ATCCATATTA
*
43048502 TTTATTTTATTTTTTTAACACAAAATATTAAC
1 TTTATTTTATTTTTTTAAAACAAAATATTAAC
43048534 TTTATTTTATTTTTTTAAAACAAAATATTAAC
1 TTTATTTTATTTTTTTAAAACAAAATATTAAC
43048566 ATAAAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (32 bp):
TTTATTTTATTTTTTTAAAACAAAATATTAAC
Found at i:43055110 original size:47 final size:47
Alignment explanation
Indices: 43055041--43055133 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
43055031 TTTTTCTAAG
*
43055041 GTATATACGATCCATACCTGGTCATATTAGTGATTATGAGCACATTT
1 GTATATACGATCCATACCTGGTCATATTAGGGATTATGAGCACATTT
*
43055088 GTATATACGATCCATACTTGGTCATATTAGGGATTATGAGCACATT
1 GTATATACGATCCATACCTGGTCATATTAGGGATTATGAGCACATT
43055134 AATCGGAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (47 bp):
GTATATACGATCCATACCTGGTCATATTAGGGATTATGAGCACATTT
Found at i:43055258 original size:40 final size:40
Alignment explanation
Indices: 43055205--43055379 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
43055195 CGGATGTAAC
* * *
43055205 AACCAGCATGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
43055245 AACCCGCACGAATGCCTTCGGGATTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
43055285 AACCCGCACGAATGCCTTCGGGGCTTAACTCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
43055325 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
43055365 AACCCGCACGAATGC
1 AACCCGCACGAATGC
43055380 TATGCACATA
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:43058540 original size:65 final size:65
Alignment explanation
Indices: 43058439--43058566 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 65
43058429 TTTCCTAGAT
* * *
43058439 TCTGGCTGTATTAAAATAGGGGCCTCAGTTAGAACTTTCTTAAGCCTCTCAAAACTCTCCTACAC
1 TCTGGCTGTATTAAAACAGAGGCCTCAGTTAAAACTTTCTTAAGCCTCTCAAAACTCTCCTACAC
* * *
43058504 TCTGGTTGTATTAAAACAGAGGCCTCAGTTAAAACTTTCTTAAGCCTTTCAAAACTTTCCTAC
1 TCTGGCTGTATTAAAACAGAGGCCTCAGTTAAAACTTTCTTAAGCCTCTCAAAACTCTCCTAC
43058567 TGTGCATCAG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (65 bp):
TCTGGCTGTATTAAAACAGAGGCCTCAGTTAAAACTTTCTTAAGCCTCTCAAAACTCTCCTACAC
Found at i:43062255 original size:67 final size:67
Alignment explanation
Indices: 43062157--43062466 Score: 541
Period size: 67 Copynumber: 4.6 Consensus size: 67
43062147 CACCCATGTG
* * * * * *
43062157 ACCTAGCCAC-TTTATTTTGTAGCTTTATTGTTTACATGGTGTCCTTCACCTGGAACCACACATG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
43062221 CA
66 CA
43062223 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
43062288 CA
66 CA
43062290 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
43062355 CA
66 CA
43062357 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
43062422 CA
66 CA
* *
43062424 ACCTAGCTACATTTATCTCGTAGCTTTCTTGTCTACATGGTGT
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGT
43062467 ACACATAGTA
Statistics
Matches: 235, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
66 9 0.04
67 226 0.96
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (67 bp):
ACCTAGCTACATTTATCTCGTAGCTCTCTTGTTTACATGGTGTTCTTCACCTGGAACCACACATG
CA
Found at i:43062520 original size:64 final size:64
Alignment explanation
Indices: 43062418--43062561 Score: 216
Period size: 64 Copynumber: 2.2 Consensus size: 64
43062408 TGGAACCACA
* * * * * *
43062418 CATGCAACCTAGCTACATTTATCTCGTAGCTTTCTTGTCTACATGGTGTACACATAGTATCACC
1 CATGCGACATAGCTACATATATCCCGTAACTCTCTTGTCTACATGGTGTACACATAGTATCACC
*
43062482 TATGCGACATAGCTACATATATCCCGTAACTCTCTTGTCTACATGGTGTACACATAGTATCACC
1 CATGCGACATAGCTACATATATCCCGTAACTCTCTTGTCTACATGGTGTACACATAGTATCACC
*
43062546 CATGCGACCTAGCTAC
1 CATGCGACATAGCTAC
43062562 CTCATAATGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 71 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (64 bp):
CATGCGACATAGCTACATATATCCCGTAACTCTCTTGTCTACATGGTGTACACATAGTATCACC
Found at i:43077359 original size:18 final size:18
Alignment explanation
Indices: 43077336--43077370 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
43077326 TTAATATAGG
43077336 AGTAAATTCC-TGATTAGA
1 AGTAAA-TCCTTGATTAGA
43077354 AGTAAATCCTTGATTAG
1 AGTAAATCCTTGATTAG
43077371 GATTTATCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (18 bp):
AGTAAATCCTTGATTAGA
Found at i:43078143 original size:15 final size:15
Alignment explanation
Indices: 43078123--43078152 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43078113 AACCTAAAAA
*
43078123 TTCTATTTCTGTTTT
1 TTCTATTTCTATTTT
43078138 TTCTATTTCTATTTT
1 TTCTATTTCTATTTT
43078153 CTTAGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.73
Consensus pattern (15 bp):
TTCTATTTCTATTTT
Found at i:43079912 original size:49 final size:49
Alignment explanation
Indices: 43079858--43079954 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
43079848 TTCTCTTAAC
* *
43079858 TTTTTCTTTAGTAAATAATGGGATTTCTGTTAATCCACCTCTATTATCT
1 TTTTTCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCT
*
43079907 TTTTTCTTTAGTAAATAATGGAATTTCTGTTAATCCTCCTCTAGTATC
1 TTTTTCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATC
43079955 CTTAGCGACT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.10, T:0.48
Consensus pattern (49 bp):
TTTTTCTTTAGTAAATAATGGAATTTCTGTTAATCCACCTCTAGTATCT
Found at i:43087711 original size:51 final size:51
Alignment explanation
Indices: 43087649--43087745 Score: 194
Period size: 51 Copynumber: 1.9 Consensus size: 51
43087639 ACCAAGAGGA
43087649 CCCCCCCCCCGAGAACCGTATATGAGAATTTCATCTCGTACAGCTCGCCCC
1 CCCCCCCCCCGAGAACCGTATATGAGAATTTCATCTCGTACAGCTCGCCCC
43087700 CCCCCCCCCCGAGAACCGTATATGAGAATTTCATCTCGTACAGCTC
1 CCCCCCCCCCGAGAACCGTATATGAGAATTTCATCTCGTACAGCTC
43087746 AAACAAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.23, C:0.41, G:0.15, T:0.21
Consensus pattern (51 bp):
CCCCCCCCCCGAGAACCGTATATGAGAATTTCATCTCGTACAGCTCGCCCC
Found at i:43099930 original size:14 final size:14
Alignment explanation
Indices: 43099907--43099939 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
43099897 ATATATATAC
43099907 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
43099921 TTTTTGTTTTTATT
1 TTTTTATTTTTATT
43099935 TTTTT
1 TTTTT
43099940 CAAACGTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:43102437 original size:18 final size:18
Alignment explanation
Indices: 43102416--43102459 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
43102406 GATAATCAAT
*
43102416 TATACATATGTATCCATA
1 TATACATATATATCCATA
43102434 TATACATATATATCCATA
1 TATACATATATATCCATA
43102452 TATACATA
1 TATACATA
43102460 CTCATGAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (18 bp):
TATACATATATATCCATA
Found at i:43102749 original size:41 final size:41
Alignment explanation
Indices: 43102681--43102865 Score: 214
Period size: 42 Copynumber: 4.5 Consensus size: 41
43102671 AAAAATTTGT
* *
43102681 TAGGC-ATAAAGCCT-AGTATAATACACCGGTACAGAGCCTGC
1 TAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCCTGC
* * * *
43102722 TAGGCAATAAACCTGAGT-TAATTCACCGGCATAAAGTCTGC
1 TAGGCAATAAGCCTGA-TATAATACACCGGCACAAAGCCTGC
* * *
43102763 TAGGCATTAAGCCTGATATCATACACCGACAACAAAGCCTGC
1 TAGGCAATAAGCCTGATATAATACACCGGC-ACAAAGCCTGC
*
43102805 TAGGCAATAAGCCTGATATCATACACCGGCATCAAAGCCTGC
1 TAGGCAATAAGCCTGATATAATACACCGGCA-CAAAGCCTGC
43102847 TAGGCAATAAGCCTGATAT
1 TAGGCAATAAGCCTGATAT
43102866 TATATCACTA
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
40 1 0.01
41 52 0.42
42 71 0.57
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (41 bp):
TAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGC
Found at i:43102820 original size:83 final size:83
Alignment explanation
Indices: 43102681--43102865 Score: 232
Period size: 83 Copynumber: 2.2 Consensus size: 83
43102671 AAAAATTTGT
* ** *
43102681 TAGGCATAAAGCCT-AGTATAATACACCGGTACAGAGCCTGCTAGGCAATAAACCTGAGT-TAAT
1 TAGGCATTAAGCCTGA-TATAATACACCGCAACAAAGCCTGCTAGGCAATAAACCTGA-TATAAT
* *
43102744 TCACCGGCAT-AAAGTCTGC
64 ACACCGGCATCAAAGCCTGC
* * *
43102763 TAGGCATTAAGCCTGATATCATACACCGACAACAAAGCCTGCTAGGCAATAAGCCTGATATCATA
1 TAGGCATTAAGCCTGATATAATACACCG-CAACAAAGCCTGCTAGGCAATAAACCTGATATAATA
43102828 CACCGGCATCAAAGCCTGC
65 CACCGGCATCAAAGCCTGC
*
43102847 TAGGCAATAAGCCTGATAT
1 TAGGCATTAAGCCTGATAT
43102866 TATATCACTA
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
82 25 0.28
83 38 0.43
84 26 0.29
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (83 bp):
TAGGCATTAAGCCTGATATAATACACCGCAACAAAGCCTGCTAGGCAATAAACCTGATATAATAC
ACCGGCATCAAAGCCTGC
Found at i:43111112 original size:20 final size:20
Alignment explanation
Indices: 43111071--43111113 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
43111061 ATTAACTTTA
* *
43111071 TTAAATAATAAATAATATTT
1 TTAAATAACAAATAATAATT
*
43111091 TTAAATAACAAATATTAATT
1 TTAAATAACAAATAATAATT
43111111 TTA
1 TTA
43111114 TCAAAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAATAACAAATAATAATT
Found at i:43113345 original size:6 final size:6
Alignment explanation
Indices: 43113334--43113358 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
43113324 AGGCAAGAAG
43113334 ACCATC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC A
43113359 ATCACCCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCATC
Found at i:43114603 original size:18 final size:18
Alignment explanation
Indices: 43114568--43114602 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
43114558 TTTTATTTTT
43114568 TATATAAATAAATTAAAA
1 TATATAAATAAATTAAAA
*
43114586 TATAT-AATACATTAAAA
1 TATATAAATAAATTAAAA
43114603 ACATTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TATATAAATAAATTAAAA
Found at i:43115008 original size:42 final size:42
Alignment explanation
Indices: 43114957--43115285 Score: 543
Period size: 42 Copynumber: 7.8 Consensus size: 42
43114947 GTTTACAAAC
* *
43114957 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
43114999 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
43115041 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
43115083 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* * *
43115125 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTATAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* * *
43115167 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
43115209 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
43115251 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
43115286 TTTTTTTTCT
Statistics
Matches: 270, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
41 1 0.00
42 269 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:43115316 original size:43 final size:42
Alignment explanation
Indices: 43114957--43115386 Score: 437
Period size: 42 Copynumber: 10.2 Consensus size: 42
43114947 GTTTACAAAC
* * *
43114957 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCG-CTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
* *
43114999 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
* *
43115041 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
* *
43115083 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
43115125 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTATAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
* * * *
43115167 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCG-CTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTA-AA
* *
43115209 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-CTTAAGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAA-A
* * ***
43115251 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTAAA
** * * * *
43115294 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGCATTTT--T
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAAA
* * * *
43115334 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATAC
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTA-AA
43115378 AAAAACGCC
1 AAAAACGCC
43115387 ACTATTTTTG
Statistics
Matches: 348, Mismatches: 33, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
40 31 0.09
41 5 0.01
42 273 0.78
43 29 0.08
44 10 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTAAA
Found at i:43115463 original size:14 final size:14
Alignment explanation
Indices: 43115440--43115473 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
43115430 GCCCTCCTGT
*
43115440 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
43115454 AGCAACATTTCAAA
1 AGCAACATTTCAAA
43115468 AGCAAC
1 AGCAAC
43115474 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:43115765 original size:21 final size:21
Alignment explanation
Indices: 43115697--43115767 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
43115687 TTTTGCTCTG
* *
43115697 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
43115718 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
43115739 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
43115760 CTCTGCTT
1 CTCTGCTT
43115768 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:43121241 original size:18 final size:18
Alignment explanation
Indices: 43121218--43121382 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
43121208 AATTGCAATG
43121218 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
43121236 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
43121254 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
43121272 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
43121291 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
43121309 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
43121323 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
43121341 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
43121357 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
43121374 GTAAGTTAT
1 GTAAGTTAT
43121383 TATGTATTGT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 14 0.12
17 8 0.07
18 61 0.53
19 15 0.13
20 4 0.03
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:43121266 original size:11 final size:9
Alignment explanation
Indices: 43121218--43121382 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
43121208 AATTGCAATG
43121218 GTAAGTTAT
1 GTAAGTTAT
43121227 GTAAGTTAT
1 GTAAGTTAT
43121236 GTAAGTTAAAT
1 GTAAGTT--AT
43121247 GT-A-TTAT
1 GTAAGTTAT
43121254 GTAAGTTAAAT
1 GTAAGTT--AT
43121265 GTAAG-T-T
1 GTAAGTTAT
43121272 GTAAGTTAT
1 GTAAGTTAT
*
43121281 -TATGTATTAT
1 GTAAG--TTAT
43121291 GTAAG-T-T
1 GTAAGTTAT
43121298 GTAAGTTAAAT
1 GTAAGTT--AT
*
43121309 GT-A-TTGT
1 GTAAGTTAT
43121316 GTAAG-T-T
1 GTAAGTTAT
43121323 GTAAGTTAAAT
1 GTAAGTT--AT
43121334 GT-A-TTAT
1 GTAAGTTAT
43121341 GTAAG-T-T
1 GTAAGTTAT
43121348 GTAAGTTAT
1 GTAAGTTAT
*
43121357 -TATGTATTAT
1 GTAAG--TTAT
43121367 GTAAG-T-T
1 GTAAGTTAT
43121374 GTAAGTTAT
1 GTAAGTTAT
43121383 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:43121293 original size:19 final size:19
Alignment explanation
Indices: 43121232--43121580 Score: 77
Period size: 19 Copynumber: 18.5 Consensus size: 19
43121222 GTTATGTAAG
*
43121232 TTATGTAAGTTA-AATGTA
1 TTATGTAAGTTATTATGTA
*
43121250 TTATGTAAGTTA-AATGTAA
1 TTATGTAAGTTATTATGT-A
*
43121269 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
43121287 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
*
43121312 TTGTGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-T-A-TT--ATGTA
* *
43121337 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
43121353 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
43121371 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
*
43121389 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTT---A-TT--ATGTA
* *
43121414 TTATGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
43121430 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
*
43121448 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
* * *
43121466 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
43121482 TTAT-TATG-TATTATGTAA
1 TTATGTAAGTTATTATGT-A
* *
43121500 GT-TGTAAGTTATAATGTA
1 TTATGTAAGTTATTATGTA
* * *
43121518 TTGTGTAAGTT-GTAAG--
1 TTATGTAAGTTATTATGTA
*
43121534 TTA--TAAATGTATTATGTAA
1 TTATGTAAGT-TATTATGT-A
*
43121553 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTATTATGTA
43121571 TTATGTAAGT
1 TTATGTAAGT
43121581 AATGTAAGTT
Statistics
Matches: 245, Mismatches: 42, Indels: 87
0.66 0.11 0.23
Matches are distributed among these distances:
14 7 0.03
15 19 0.08
16 16 0.07
17 3 0.01
18 57 0.23
19 75 0.31
20 7 0.03
21 1 0.00
22 2 0.01
23 5 0.02
24 1 0.00
25 52 0.21
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.47
Consensus pattern (19 bp):
TTATGTAAGTTATTATGTA
Found at i:43121297 original size:26 final size:26
Alignment explanation
Indices: 43121263--43121627 Score: 576
Period size: 26 Copynumber: 14.1 Consensus size: 26
43121253 TGTAAGTTAA
43121263 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
43121289 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
43121314 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
43121339 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
43121365 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
43121391 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
43121416 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
43121442 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
43121468 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
43121494 ATGTAAGTTGTAAGTTATAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
43121520 GTGTAAGTTGTAAGTTATAAATGTATT
1 ATGTAAGTTGTAAGTTAT-TATGTATT
43121547 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
43121573 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
43121600 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
43121626 AT
1 AT
43121628 TTAATAAAAT
Statistics
Matches: 315, Mismatches: 18, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
25 78 0.25
26 188 0.60
27 40 0.13
28 9 0.03
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:43121747 original size:73 final size:73
Alignment explanation
Indices: 43121664--43121813 Score: 300
Period size: 73 Copynumber: 2.1 Consensus size: 73
43121654 ACATTACTAA
43121664 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
43121729 TATTTTTT
66 TATTTTTT
43121737 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
43121802 TATTTTTT
66 TATTTTTT
43121810 TATA
1 TATA
43121814 TTTTATTTTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:43121807 original size:35 final size:35
Alignment explanation
Indices: 43121695--43121807 Score: 104
Period size: 35 Copynumber: 3.1 Consensus size: 35
43121685 ATAAAATAAC
43121695 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
* * **** *
43121730 ATTTT-TTTATAATTATTAATAATATTTAATAAAATA-AC
1 ATTTTATTT-TAA-TAGT--CAAT-TTTAATATTCCACAT
43121768 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
1 ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
43121803 ATTTT
1 ATTTT
43121808 TTTATATTTT
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
34 11 0.19
35 17 0.30
36 3 0.05
37 3 0.05
38 12 0.21
39 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (35 bp):
ATTTTATTTTAATAGTCAATTTTAATATTCCACAT
Found at i:43123787 original size:40 final size:40
Alignment explanation
Indices: 43123709--43123787 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
43123699 AAACACAAAA
* * * * * *
43123709 TAACATTTTTTGCGGCGTTTTAAGATAAGCGCCGCTAAAG
1 TAACATATTTTGCGGCATTTTAACAAAAACGCCACTAAAG
43123749 TAACATATTTTGCGGCATTTTAACAAAAACGCCACTAAA
1 TAACATATTTTGCGGCATTTTAACAAAAACGCCACTAAA
43123788 TACATAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (40 bp):
TAACATATTTTGCGGCATTTTAACAAAAACGCCACTAAAG
Found at i:43123884 original size:114 final size:114
Alignment explanation
Indices: 43123644--43123960 Score: 544
Period size: 115 Copynumber: 2.8 Consensus size: 114
43123634 AATAAACACC
43123644 TGCGGCGTTTTAACAAAAACGCCACTAAATACATAAAAAACGGTCACGTTTTGGTAAACACAAAA
1 TGCGGCGTTTTAACAAAAACGCCACTAAATACATAAAAAACGGTCACGTTTTGGTAAACACAAAA
* *
43123709 TAACATTTTTTGCGGCGTTTTAAGATAAGCGCCGCTAAAGTAACATATTT
66 TAACA-TTTTTGCGGCGTTTTAAAAGAAGCGCCGCTAAAGTAACATATTT
* *
43123759 TGCGGCATTTTAACAAAAACGCCACTAAATACATAAAAAACGGTCACGTTTTGGTAAACACATAA
1 TGCGGCGTTTTAACAAAAACGCCACTAAATACATAAAAAACGGTCACGTTTTGGTAAACACAAAA
* * *
43123824 TAACATTTTTGTGGCATTTTAAAAGAAGCGCCGCTAAAGTAACATCTTT
66 TAACATTTTTGCGGCGTTTTAAAAGAAGCGCCGCTAAAGTAACATATTT
*
43123873 TGCGGCGTTTTAACAAAAACGCCACTAAATACATAAAAAAACGGTCACATTTTGGTAAACACAAA
1 TGCGGCGTTTTAACAAAAACGCCACTAAATACAT-AAAAAACGGTCACGTTTTGGTAAACACAAA
43123938 ATAACATTTTTGCGGCGTTTTAA
65 ATAACATTTTTGCGGCGTTTTAA
43123961 TAAAAACGCC
Statistics
Matches: 189, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
114 72 0.38
115 117 0.62
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (114 bp):
TGCGGCGTTTTAACAAAAACGCCACTAAATACATAAAAAACGGTCACGTTTTGGTAAACACAAAA
TAACATTTTTGCGGCGTTTTAAAAGAAGCGCCGCTAAAGTAACATATTT
Found at i:43123901 original size:40 final size:39
Alignment explanation
Indices: 43123824--43123901 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
43123814 AAACACATAA
* * *
43123824 TAACATTTTTGTGGCATTTTAAAAGAAGCGCCGCTAAAG
1 TAACATTTTTGCGGCATTTTAAAAGAAACGCCACTAAAG
*
43123863 TAACATCTTTTGCGGCGTTTTAACAA-AAACGCCACTAAA
1 TAACAT-TTTTGCGGCATTTTAA-AAGAAACGCCACTAAA
43123902 TACATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 6 0.18
40 25 0.76
41 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (39 bp):
TAACATTTTTGCGGCATTTTAAAAGAAACGCCACTAAAG
Found at i:43126094 original size:9 final size:8
Alignment explanation
Indices: 43126079--43126103 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
43126069 TGCATCCCAT
43126079 TAAAAAAA
1 TAAAAAAA
43126087 TAAAAAAA
1 TAAAAAAA
43126095 TAAAAAAA
1 TAAAAAAA
43126103 T
1 T
43126104 TCAAACCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:43128027 original size:6 final size:6
Alignment explanation
Indices: 43128016--43128040 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
43128006 AGGCAAGAAG
43128016 ACCATC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC A
43128041 ATCACCCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCATC
Found at i:43142840 original size:21 final size:19
Alignment explanation
Indices: 43142800--43142837 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
43142790 GGGTCATTAT
43142800 TGGCTTGTTACGTAAAAAA
1 TGGCTTGTTACGTAAAAAA
43142819 TGGCTTGTTACGTAAAAAA
1 TGGCTTGTTACGTAAAAAA
43142838 AATTTGCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
TGGCTTGTTACGTAAAAAA
Found at i:43145957 original size:21 final size:21
Alignment explanation
Indices: 43145890--43145959 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
43145880 GAAGTTCGAA
* *
43145890 AGCTGAACAGAAGCTCGTGAG
1 AGCTTAACAAAAGCTCGTGAG
* * *
43145911 AGCTAAACAAAAGCTCATGAT
1 AGCTTAACAAAAGCTCGTGAG
*
43145932 AGCTTAACAAAAGCTCGTAAG
1 AGCTTAACAAAAGCTCGTGAG
43145953 AGCTTAA
1 AGCTTAA
43145960 TAGAAAGTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (21 bp):
AGCTTAACAAAAGCTCGTGAG
Found at i:43154742 original size:13 final size:13
Alignment explanation
Indices: 43154724--43154750 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
43154714 TAGTAAAGTA
43154724 TGGCATGTATAGG
1 TGGCATGTATAGG
43154737 TGGCATGTATAGG
1 TGGCATGTATAGG
43154750 T
1 T
43154751 TAGAAGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.37, T:0.33
Consensus pattern (13 bp):
TGGCATGTATAGG
Found at i:43154866 original size:25 final size:25
Alignment explanation
Indices: 43154838--43154886 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
43154828 TGATTTTAGT
*
43154838 ATATGAAATGTGATGCAGTATGATA
1 ATATGAAATGTGATGCAGAATGATA
43154863 ATATGAAATGTGATGCAGAATGAT
1 ATATGAAATGTGATGCAGAATGAT
43154887 CTATTTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (25 bp):
ATATGAAATGTGATGCAGAATGATA
Found at i:43157854 original size:125 final size:125
Alignment explanation
Indices: 43157683--43158040 Score: 418
Period size: 125 Copynumber: 2.9 Consensus size: 125
43157673 AGAAAAAGCT
* * * * * * * **
43157683 TTTTTTCATTAATTTTGCTGATAGTGCATCCTGTTTGATGCATTTTTGCCACTATTTGTTCAAAA
1 TTTTCTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAAAA
* * *
43157748 TCGTTTTCTCAAAATTATTTTTTCAGGAACTATTATAGAAAAA-AGCGTCCATGTGGGAGC
66 TCGTTTTCTCAAAATTA-TTTTTCAAGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGC
* *
43157808 TTTTCTCAATATTTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTCTTTGTTCAAAA
1 TTTTCTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAAAA
* * *
43157873 CCGTCTTT-TCAAAATTATTTTTCAAGAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGC
66 TCGT-TTTCTCAAAATTATTTTTCAAGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGC
* * * * * *
43157933 TTTTTTCAGTAATTTTGCTAACAGTGCATCCTACTTGAAGTGTTTTTAACATTATCTT-TTCAGA
1 TTTTCTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTAT-TTGTTCAAA
* *
43157997 ATCGTCTTCTCAAAATTAATTTTTCTAA-AACTACTGTAGAAAAA
65 ATCGTTTTCTCAAAATT-ATTTTTC-AAGAACTACTATAGAAAAA
43158041 AAAACAAAAT
Statistics
Matches: 200, Mismatches: 27, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
124 24 0.12
125 146 0.73
126 28 0.14
127 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (125 bp):
TTTTCTCAATAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTAACACTATTTGTTCAAAA
TCGTTTTCTCAAAATTATTTTTCAAGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGC
Found at i:43158164 original size:34 final size:33
Alignment explanation
Indices: 43158116--43158229 Score: 120
Period size: 34 Copynumber: 3.4 Consensus size: 33
43158106 TAACAAAACT
*
43158116 AACCTTAATTTAATTAATTTTCTTAAAAACTCTA
1 AACCCTAATTTAATTAATTTT-TTAAAAACTCTA
* * *
43158150 AACCCTAATTTAATTTATTTATTTAAAACCCCTA
1 AACCCTAATTTAATTAATTT-TTTAAAAACTCTA
* * * *
43158184 AAACCTCATTTAATTACTTTTTAAAAAAACTCTA
1 AACCCTAATTTAATTAATTTTT-TAAAAACTCTA
*
43158218 AACCTTAATTTA
1 AACCCTAATTTA
43158230 TTTTTTAAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
33 2 0.03
34 61 0.95
35 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (33 bp):
AACCCTAATTTAATTAATTTTTTAAAAACTCTA
Found at i:43158284 original size:34 final size:34
Alignment explanation
Indices: 43158245--43158335 Score: 112
Period size: 34 Copynumber: 2.7 Consensus size: 34
43158235 TAAAATTCTT
* * * *
43158245 AAACCCTACACCTTACACCTAAATTCTTTTAACA
1 AAACCCTAAACCCTAAACCTAAATTATTTTAACA
43158279 AAACCCTAAACCCTAAACCTAAATTATTTTAACA
1 AAACCCTAAACCCTAAACCTAAATTATTTTAACA
* *
43158313 AAATCAT-AACCCTAAACCCTAAA
1 AAACCCTAAACCCTAAA-CCTAAA
43158336 AACCCTAAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
33 9 0.18
34 41 0.82
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (34 bp):
AAACCCTAAACCCTAAACCTAAATTATTTTAACA
Found at i:43158353 original size:15 final size:16
Alignment explanation
Indices: 43158320--43158357 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
43158310 ACAAAATCAT
*
43158320 AACCCTAAACCCTAAA
1 AACCCTAAACCCAAAA
43158336 AACCCTAAA-CCAAAA
1 AACCCTAAACCCAAAA
43158351 AACCCTA
1 AACCCTA
43158358 GGGACTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.53, C:0.37, G:0.00, T:0.11
Consensus pattern (16 bp):
AACCCTAAACCCAAAA
Found at i:43169171 original size:19 final size:18
Alignment explanation
Indices: 43169142--43169181 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
43169132 GTATATATTT
43169142 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
*
43169160 TAAATCTTATTTGGGTAGA
1 TAAAT-TTATTTAGGTAGA
43169179 TAA
1 TAA
43169182 GTTTTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:43169258 original size:42 final size:42
Alignment explanation
Indices: 43169206--43169294 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
43169196 CTAGGAATAT
*
43169206 TTTTATTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
* *
43169248 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
43169290 TTTTC
1 TTTTC
43169295 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAAGAAGGAAACTA
Found at i:43177962 original size:13 final size:13
Alignment explanation
Indices: 43177944--43177968 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43177934 TTTTTCTCTC
43177944 TTTTTTATTTTTA
1 TTTTTTATTTTTA
43177957 TTTTTTATTTTT
1 TTTTTTATTTTT
43177969 TGGGGTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:43178528 original size:6 final size:5
Alignment explanation
Indices: 43178495--43178526 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
43178485 ATATATAGAT
43178495 TTTTA TTTTA TTTTA TTTTA TTTTA TCTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA T
43178527 CTATATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:43180936 original size:26 final size:26
Alignment explanation
Indices: 43180907--43180966 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
43180897 TCCCTTTGAA
* * *
43180907 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
43180933 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
43180961 CCATTC
1 TCATTC
43180967 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:43180952 original size:28 final size:28
Alignment explanation
Indices: 43180921--43180992 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
43180911 TCGATATTTT
*
43180921 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
43180949 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
43180977 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
43180993 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:43182826 original size:83 final size:83
Alignment explanation
Indices: 43182687--43182851 Score: 303
Period size: 83 Copynumber: 2.0 Consensus size: 83
43182677 TATTTGTATC
*
43182687 ATCACATCATATATATAAGAAACACATTACGGGTCTTCTCAAGTTTTGATAATAATCTCATTCAA
1 ATCACATCATATATATAAAAAACACATTACGGGTCTTCTCAAGTTTTGATAATAATCTCATTCAA
43182752 TCCGATGAACTGCGAACA
66 TCCGATGAACTGCGAACA
*
43182770 ATCATATCATATATATAAAAAACACATTACGGGTCTTCTCAAGTTTTGATAATAATCTCATTCAA
1 ATCACATCATATATATAAAAAACACATTACGGGTCTTCTCAAGTTTTGATAATAATCTCATTCAA
*
43182835 TCCGATGAATTGCGAAC
66 TCCGATGAACTGCGAAC
43182852 TCTACTTCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.32
Consensus pattern (83 bp):
ATCACATCATATATATAAAAAACACATTACGGGTCTTCTCAAGTTTTGATAATAATCTCATTCAA
TCCGATGAACTGCGAACA
Found at i:43186072 original size:28 final size:28
Alignment explanation
Indices: 43186038--43186249 Score: 190
Period size: 28 Copynumber: 7.5 Consensus size: 28
43186028 AACCGATCTT
**
43186038 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*** * *
43186066 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCAGTTACGGAACTC
* *
43186095 GCACACATAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*** * *
43186123 GCACACACAGTGCCTCAACAACAGATCTC
1 GCACACACAGTG-CTCAGTTACGGAACTC
43186152 GCACACACAGTGCTCAGTTACGGAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*** * *
43186180 GCACACACAGTGCCTCAACAACTGATCTC
1 GCACACACAGTG-CTCAGTTACGGAACTC
* * *
43186209 GCACACACAGTGTTCGGTTACGGAACTT
1 GCACACACAGTGCTCAGTTACGGAACTC
*
43186237 ACACACACAGTGC
1 GCACACACAGTGC
43186250 CTATGGTCAC
Statistics
Matches: 140, Mismatches: 41, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
28 75 0.54
29 65 0.46
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.18
Consensus pattern (28 bp):
GCACACACAGTGCTCAGTTACGGAACTC
Found at i:43186078 original size:57 final size:57
Alignment explanation
Indices: 43186008--43186251 Score: 380
Period size: 57 Copynumber: 4.2 Consensus size: 57
43185998 GATCTCATTT
* * *
43186008 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
43186067 CACACACAGTGCCTCAACAACCGATCTCGCACACATAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
43186124 CACACACAGTGCCTCAACAACAGATCTCGCACACACAGTGCTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * **
43186181 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGTTCGGTTACGGAACTTA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
43186238 CACACACAGTGCCT
1 CACACACAGTGCCT
43186252 ATGGTCACTT
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
57 166 0.96
59 7 0.04
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:43186106 original size:29 final size:29
Alignment explanation
Indices: 43186008--43186220 Score: 189
Period size: 29 Copynumber: 7.4 Consensus size: 29
43185998 GATCTCATTT
* * *
43186008 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACGGATCTCG
***** *
43186039 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
*
43186067 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
* **** *
43186096 CACACATAGTG-CTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
*
43186124 CACACACAGTGCCTCAACAACAGATCTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
*** *
43186153 CACACACAGTG-CTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
*
43186181 CACACACAGTGCCTCAACAACTGATCTCG
1 CACACACAGTGCCTCAACAACGGATCTCG
43186210 CACACACAGTG
1 CACACACAGTG
43186221 TTCGGTTACG
Statistics
Matches: 139, Mismatches: 40, Indels: 8
0.74 0.21 0.04
Matches are distributed among these distances:
28 63 0.45
29 69 0.50
31 7 0.05
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACGGATCTCG
Found at i:43188279 original size:28 final size:28
Alignment explanation
Indices: 43188231--43188329 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 28
43188221 TCGATATTTT
* *
43188231 GCACACT-AGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTTTCAATATCTC
*
43188258 GCACACTAAGTGCCATTTTCAATATTTC
1 GCACACTAAGTGCCATTTTCAATATCTC
* * ** * * * *
43188286 GTACACTGAGTATCATATTTGATTACCCC
1 GCACACTAAGTGCCAT-TTTCAATATCTC
43188315 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
43188330 CATTTTGTCG
Statistics
Matches: 54, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
27 7 0.13
28 29 0.54
29 18 0.33
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTTTCAATATCTC
Found at i:43195181 original size:24 final size:24
Alignment explanation
Indices: 43195154--43195207 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
43195144 AGTATAACGG
43195154 GAAGCTCATGA-GAGCC-ATAATCAA
1 GAAGCTCAT-ACGAGCCAATAA-CAA
43195178 GAAGCTCATACGAGCCAATAACAA
1 GAAGCTCATACGAGCCAATAACAA
*
43195202 GTAGCT
1 GAAGCT
43195208 TCGAAAAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 1 0.04
24 22 0.81
25 4 0.15
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (24 bp):
GAAGCTCATACGAGCCAATAACAA
Found at i:43195278 original size:73 final size:77
Alignment explanation
Indices: 43195189--43195330 Score: 179
Period size: 73 Copynumber: 1.9 Consensus size: 77
43195179 AAGCTCATAC
* *
43195189 GAGCCAATAACAAGTAGCTT-CGAAA-AGCCATT-AAT-GGGAAGCCCA-GAATATCCATAT-AT
1 GAGCCAATAACAAGTAGCTTAC-AAAGAGCC-TTAAATCGGGAAGCCCACGAAGAGCCATATAAT
43195248 CGGGAAATTCAAGT
64 CGGGAAATTCAAGT
* * *
43195262 GAGCCATTATCAAGTAGCTTACAAAGAGCCTTAAATCGGGAAGCTCACGAAGAGCCATATAATCG
1 GAGCCAATAACAAGTAGCTTACAAAGAGCCTTAAATCGGGAAGCCCACGAAGAGCCATATAATCG
43195327 GGAA
66 GGAA
43195331 GCTCATAAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
73 23 0.40
74 8 0.14
75 9 0.16
76 10 0.17
77 8 0.14
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (77 bp):
GAGCCAATAACAAGTAGCTTACAAAGAGCCTTAAATCGGGAAGCCCACGAAGAGCCATATAATCG
GGAAATTCAAGT
Found at i:43195314 original size:26 final size:27
Alignment explanation
Indices: 43195285--43195335 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
43195275 GTAGCTTACA
*
43195285 AAGAGCCTTA-AATCGGGAAGCTCACG
1 AAGAGCCATATAATCGGGAAGCTCACG
43195311 AAGAGCCATATAATCGGGAAGCTCA
1 AAGAGCCATATAATCGGGAAGCTCA
43195336 TAAGAGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
AAGAGCCATATAATCGGGAAGCTCACG
Found at i:43203454 original size:24 final size:25
Alignment explanation
Indices: 43203425--43203479 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
43203415 TGCATACTTA
* * *
43203425 ACAATTATACAAATTACATACATAT
1 ACAATTAAACAAATCACATAAATAT
*
43203450 A-AATTAAACATATCACATAAATAT
1 ACAATTAAACAAATCACATAAATAT
43203474 ACAATT
1 ACAATT
43203480 TAGTTACGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.31
Consensus pattern (25 bp):
ACAATTAAACAAATCACATAAATAT
Found at i:43207819 original size:13 final size:13
Alignment explanation
Indices: 43207801--43207828 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
43207791 TTGCCTCCCT
43207801 TTGTTAAGGTAAG
1 TTGTTAAGGTAAG
43207814 TTGTTAAGGTAAG
1 TTGTTAAGGTAAG
43207827 TT
1 TT
43207829 AAGTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (13 bp):
TTGTTAAGGTAAG
Found at i:43207883 original size:84 final size:85
Alignment explanation
Indices: 43207730--43207885 Score: 260
Period size: 84 Copynumber: 1.8 Consensus size: 85
43207720 TATGTTGTAA
*
43207730 TGTTAAGGTAAGTTAAGTAAATTCCATATGGACTTACTAAGCATTCAATATGTTTACTCCGTTGC
1 TGTTAAGGTAAGTTAAGTAAATTCCATATGGAATTACTAAGCATTCAATATGTTTACTCCGTTGC
43207795 CTCCCTTTGTTAAGGTAAGT
66 CTCCCTTTGTTAAGGTAAGT
* * * *
43207815 TGTTAAGGTAAGTTAAGTAAATTTCATAT-GAATTACTTAGCATTCAGTATGTTTATTCCGTTGC
1 TGTTAAGGTAAGTTAAGTAAATTCCATATGGAATTACTAAGCATTCAATATGTTTACTCCGTTGC
43207879 CTCCCTT
66 CTCCCTT
43207886 AGTTCCCTTA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 38 0.58
85 28 0.42
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (85 bp):
TGTTAAGGTAAGTTAAGTAAATTCCATATGGAATTACTAAGCATTCAATATGTTTACTCCGTTGC
CTCCCTTTGTTAAGGTAAGT
Found at i:43209410 original size:22 final size:22
Alignment explanation
Indices: 43209359--43209410 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
43209349 AACTACCAAC
* *
43209359 TTAAAAAATTACTATATTTTTT
1 TTAAAAAATTAATATATTATTT
**
43209381 TTTCAAAATATAAT-TATTATTT
1 TTAAAAAAT-TAATATATTATTT
43209403 TTAAAAAA
1 TTAAAAAA
43209411 ATTGTTTTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAAAAAATTAATATATTATTT
Found at i:43210558 original size:10 final size:10
Alignment explanation
Indices: 43210543--43210567 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
43210533 ATAACCTCTA
43210543 AAAAAATATT
1 AAAAAATATT
43210553 AAAAAATATT
1 AAAAAATATT
43210563 AAAAA
1 AAAAA
43210568 TAATTAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
AAAAAATATT
Found at i:43211413 original size:19 final size:21
Alignment explanation
Indices: 43211385--43211433 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
43211375 TATATTTTTA
*
43211385 TAATTTTTAAAAGATT-AAAT-
1 TAATTTTAAAAAG-TTAAAATG
43211405 TAATTTTAAAAAGTTAAAATG
1 TAATTTTAAAAAGTTAAAATG
43211426 TAATTTTA
1 TAATTTTA
43211434 TTTTTATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 16 0.62
21 8 0.31
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TAATTTTAAAAAGTTAAAATG
Found at i:43212822 original size:6 final size:6
Alignment explanation
Indices: 43212811--43212844 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
43212801 TGAGTTGTTT
*
43212811 TTAGCA TTAGCA TTAGCA TTAGCA TTAGCT TTAG
1 TTAGCA TTAGCA TTAGCA TTAGCA TTAGCA TTAG
43212845 ATGTAGCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (6 bp):
TTAGCA
Found at i:43221250 original size:22 final size:22
Alignment explanation
Indices: 43221222--43221264 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
43221212 GCAAAGAAAG
43221222 CTCTCTTTATGGGAATCACTTA
1 CTCTCTTTATGGGAATCACTTA
43221244 CTCTCTTTATGGGAATCACTT
1 CTCTCTTTATGGGAATCACTT
43221265 CTGGAGTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (22 bp):
CTCTCTTTATGGGAATCACTTA
Found at i:43221393 original size:21 final size:21
Alignment explanation
Indices: 43221367--43221407 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
43221357 AGACGAGCAA
* *
43221367 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
43221388 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
43221408 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:43225718 original size:9 final size:9
Alignment explanation
Indices: 43225704--43225736 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
43225694 GTTAAACGAA
43225704 TCGAGTTAT
1 TCGAGTTAT
*
43225713 TCGAGTTAA
1 TCGAGTTAT
43225722 TCGAGTTAT
1 TCGAGTTAT
43225731 TCGAGT
1 TCGAGT
43225737 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:43225725 original size:18 final size:18
Alignment explanation
Indices: 43225702--43225736 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
43225692 GAGTTAAACG
43225702 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
43225720 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
43225737 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:43225804 original size:9 final size:9
Alignment explanation
Indices: 43225787--43225823 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
43225777 TGAGTTTTCG
43225787 AATTCGAAT
1 AATTCGAAT
*
43225796 AACTCGAAT
1 AATTCGAAT
43225805 AATTCGAAT
1 AATTCGAAT
43225814 AATTCGAAT
1 AATTCGAAT
43225823 A
1 A
43225824 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:43226654 original size:19 final size:20
Alignment explanation
Indices: 43226617--43226655 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
43226607 AAGTTAATAA
*
43226617 AAATTTTGATTAAGGTGGAT
1 AAATTTTGATTAAGATGGAT
*
43226637 AAATTTT-ATTATGATGGAT
1 AAATTTTGATTAAGATGGAT
43226656 GACAGTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.44
Consensus pattern (20 bp):
AAATTTTGATTAAGATGGAT
Found at i:43226753 original size:31 final size:31
Alignment explanation
Indices: 43226718--43226819 Score: 195
Period size: 31 Copynumber: 3.3 Consensus size: 31
43226708 TAAATTCAAT
*
43226718 TCGATTCGATTCGAATTCCATCTCACTCGAC
1 TCGATTCGATTTGAATTCCATCTCACTCGAC
43226749 TCGATTCGATTTGAATTCCATCTCACTCGAC
1 TCGATTCGATTTGAATTCCATCTCACTCGAC
43226780 TCGATTCGATTTGAATTCCATCTCACTCGAC
1 TCGATTCGATTTGAATTCCATCTCACTCGAC
43226811 TCGATTCGA
1 TCGATTCGA
43226820 GAAAATTTCA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (31 bp):
TCGATTCGATTTGAATTCCATCTCACTCGAC
Found at i:43234881 original size:17 final size:18
Alignment explanation
Indices: 43234856--43234893 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
43234846 TTAAATATTA
43234856 TTTAGAATTTTAAAAT-AT
1 TTTAGAA-TTTAAAATAAT
43234874 TTTA-AATTTAAAATAAT
1 TTTAGAATTTAAAATAAT
43234891 TTT
1 TTT
43234894 TCATTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 7 0.37
18 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTAGAATTTAAAATAAT
Found at i:43238041 original size:46 final size:45
Alignment explanation
Indices: 43237970--43238139 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
43237960 TCTCGTAACT
*
43237970 GATGCATGTCCCAGA-ATGTCTTACACTGGCTTACGTCACGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCATGAGGCC
* * ** * * *
43238015 GATGCATGTCCTAAACATGTCTTACACTATCTCTCGTCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TCGTCATGAGGCC
** * *
43238061 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTTTATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-TTCGTCATGAGGCC
43238109 GATGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
43238140 ACACAAATAA
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
45 13 0.13
46 39 0.39
47 27 0.27
48 21 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCATGAGGCC
Done.