Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 134 of 290
Found at i:45436132 original size:29 final size:29
Alignment explanation
Indices: 45436074--45436174 Score: 113
Period size: 30 Copynumber: 3.6 Consensus size: 29
45436064 AATTTATTTA
*
45436074 AAAAATATATATTAAAAAATAAAAA-A-T
1 AAAAATATATATTAAAAATTAAAAATATT
**
45436101 AAAAATATATATTTTAAATTAAAAATATT
1 AAAAATATATATTAAAAATTAAAAATATT
*
45436130 AAAAATACTATA-AAACAAATTAAAAATATT
1 AAAAATA-TATATTAA-AAATTAAAAATATT
45436160 AAAAATAT-TA-TAAAA
1 AAAAATATATATTAAAA
45436175 CTAATTATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 24 0.38
28 5 0.08
29 9 0.14
30 25 0.40
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (29 bp):
AAAAATATATATTAAAAATTAAAAATATT
Found at i:45436152 original size:30 final size:30
Alignment explanation
Indices: 45436116--45436186 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
45436106 TATATATTTT
45436116 AAATTAAAAATATTAAAAATACTATAAAAC
1 AAATTAAAAATATTAAAAATACTATAAAAC
*
45436146 AAATTAAAAATATTAAAAATATTATAAAAC
1 AAATTAAAAATATTAAAAATACTATAAAAC
* *
45436176 TAATTATAAAT
1 AAATTAAAAAT
45436187 TTGAAAGGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (30 bp):
AAATTAAAAATATTAAAAATACTATAAAAC
Found at i:45436183 original size:12 final size:10
Alignment explanation
Indices: 45436118--45436185 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 10
45436108 TATATTTTAA
45436118 ATTA-AAAAT
1 ATTATAAAAT
45436127 ATTA-AAAAT
1 ATTATAAAAT
* *
45436136 ACTATAAAACAA
1 ATTAT-AAA-AT
45436148 ATTA-AAAAT
1 ATTATAAAAT
45436157 ATTA-AAAAT
1 ATTATAAAAT
45436166 ATTATAAAACT
1 ATTATAAAA-T
45436177 AATTATAAA
1 -ATTATAAA
45436186 TTTGAAAGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
9 26 0.53
10 7 0.14
11 4 0.08
12 12 0.24
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (10 bp):
ATTATAAAAT
Found at i:45436253 original size:21 final size:21
Alignment explanation
Indices: 45436232--45436311 Score: 110
Period size: 21 Copynumber: 3.9 Consensus size: 21
45436222 TATATTATTA
45436232 AAAAAT-ATATTTAAAATTTT
1 AAAAATAATATTTAAAATTTT
*
45436252 AAAAATAATATGTAAAATTTT
1 AAAAATAATATTTAAAATTTT
*
45436273 AAAAATAATTTTTAAAATTTT
1 AAAAATAATATTTAAAATTTT
*
45436294 AAAAAATAAT-TTAAAAAT
1 -AAAAATAATATTTAAAAT
45436312 AATATTTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
20 6 0.11
21 39 0.72
22 9 0.17
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAAAATTTT
Found at i:45436369 original size:35 final size:33
Alignment explanation
Indices: 45436270--45436367 Score: 151
Period size: 33 Copynumber: 2.9 Consensus size: 33
45436260 TATGTAAAAT
*
45436270 TTTAAAAATAATTTTTAAAATTTTAAAAAATAA
1 TTTAAAAATAATATTTAAAATTTTAAAAAATAA
45436303 TTTAAAAATAATATTTAAAATTTTAAAAAATAA
1 TTTAAAAATAATATTTAAAATTTTAAAAAATAA
*
45436336 TTTCAGAAATATATATTTAAAAATTTTAAAAA
1 TTT-AAAAATA-ATATTT-AAAATTTTAAAAA
45436368 TATATACTAT
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
33 35 0.58
34 6 0.10
35 6 0.10
36 13 0.22
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (33 bp):
TTTAAAAATAATATTTAAAATTTTAAAAAATAA
Found at i:45436370 original size:54 final size:53
Alignment explanation
Indices: 45436233--45436372 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 53
45436223 ATATTATTAA
**
45436233 AAAATATATTT-AAAATTTTAAAAATAATATGTAAAATTTTAAAAATAATTTTT
1 AAAATATATTTAAAAATTTTAAAAAT-ATATGTAAAATTTTAAAAATAATTTAG
* *
45436286 AAAAT-T-TTAAAAAATAATTTAAAAATAATATTTAAAATTTTAAAAAATAATTTCAG
1 AAAATATATTTAAAAAT--TTTAAAAAT-ATATGTAAAATTTT-AAAAATAATTT-AG
45436342 AAATATATATTTAAAAATTTTAAAAATATAT
1 AAA-ATATATTTAAAAATTTTAAAAATATAT
45436373 ACTATAAAAC
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
51 2 0.03
52 6 0.08
53 5 0.07
54 23 0.31
55 11 0.15
56 7 0.09
57 11 0.15
58 1 0.01
59 8 0.11
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (53 bp):
AAAATATATTTAAAAATTTTAAAAATATATGTAAAATTTTAAAAATAATTTAG
Found at i:45436372 original size:21 final size:21
Alignment explanation
Indices: 45436232--45436372 Score: 105
Period size: 21 Copynumber: 6.5 Consensus size: 21
45436222 TATATTATTA
45436232 AAAAATATATTT-AAAATTTT
1 AAAAATATATTTAAAAATTTT
*
45436252 AAAAATAATATGT-AAAATTTT
1 AAAAAT-ATATTTAAAAATTTT
*
45436273 AAAAATA-ATTTTTAAAATTTT
1 AAAAATATA-TTTAAAAATTTT
45436294 AAAAA-ATAATTTAAAAATAATATT
1 AAAAATAT-ATTTAAAAAT--T-TT
* *
45436318 TAAAAT-T-TTAAAAAATAATTT
1 AAAAATATATTTAAAAAT--TTT
45436339 CAGAAATATATATTTAAAAATTTT
1 -A-AAA-ATATATTTAAAAATTTT
45436363 AAAAATATAT
1 AAAAATATAT
45436373 ACTATAAAAC
Statistics
Matches: 100, Mismatches: 7, Indels: 27
0.75 0.05 0.20
Matches are distributed among these distances:
19 1 0.01
20 10 0.10
21 48 0.48
22 15 0.15
23 5 0.05
24 12 0.12
25 1 0.01
26 8 0.08
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (21 bp):
AAAAATATATTTAAAAATTTT
Found at i:45436528 original size:45 final size:45
Alignment explanation
Indices: 45436463--45436572 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
45436453 GATAAAACAT
*
45436463 AAAAGAAGTAAAAAAGAAGAAGAAGAAAGAATAGGACAAAAGTTAA
1 AAAAAAAGTAAAAAA-AAGAAGAAGAAAGAATAGGACAAAAGTTAA
* *
45436509 AAAAAAAGTAAAAAAAAGAAGCAGAAAGAATAGGATAAAAGTTAA
1 AAAAAAAGTAAAAAAAAGAAGAAGAAAGAATAGGACAAAAGTTAA
*
45436554 AAAAAGTAATTAAAAAAAA
1 AAAAA--AAGTAAAAAAAA
45436573 CAAACAAACA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
45 33 0.57
46 14 0.24
47 11 0.19
ACGTcount: A:0.70, C:0.02, G:0.17, T:0.11
Consensus pattern (45 bp):
AAAAAAAGTAAAAAAAAGAAGAAGAAAGAATAGGACAAAAGTTAA
Found at i:45436888 original size:11 final size:11
Alignment explanation
Indices: 45436868--45436896 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
45436858 AATTAATTAA
45436868 TTTT-TTTACT
1 TTTTCTTTACT
45436878 TTTTCTTTACT
1 TTTTCTTTACT
45436889 TTTTCTTT
1 TTTTCTTT
45436897 CTCTCTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTCTTTACT
Found at i:45441232 original size:6 final size:6
Alignment explanation
Indices: 45441221--45441250 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
45441211 CTAGCAATAC
45441221 AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA
45441251 TATTCAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:45445126 original size:381 final size:379
Alignment explanation
Indices: 45444423--45445181 Score: 1473
Period size: 381 Copynumber: 2.0 Consensus size: 379
45444413 CCTAACTCAT
45444423 AGGAAAATATAGAAGATCTCAAAAATTCCTCAGAGAAAAGAAGTCCAGAAGAAAACATCATTTAA
1 AGGAAAATATAGAAGATCTCAAAAATTCCTCAGAGAAAAGAAGTCCAGAAGAAAACATCATTTAA
45444488 TCCCACTGGAACCAAATATAACAAGAACAATGTATCTTCCCATACATATATATCAAATGGAGCAT
66 TCCCACTGGAACCAAATATAACAAGAACAATGTATCTTCCCATACATATATATCAAATGGAGCAT
45444553 TAAGTAGAAGAAACAATATCATAATATCATACATATCCTCTCGTCAATTCTTATCAGACGAAATG
131 TAAGTAGAAGAAACAATATCATAATATCATACATATCCTCTCGTCAATTCTTATCAGACGAAATG
45444618 TAATAAAATGCCTGAGGAAATACATTAATACAAATTATAAACCAGTCGGACTACCAAGGCATCCA
196 TAATAAAATGCCTGAGGAAATACATTAATACAAATTATAAACCAGTCGGACTACCAAGGCATCCA
45444683 TCTAACACCAGGATTAGAAAACATTCCCATATAACAAGAATTTCTTCAAAAGATCAACAGCCATA
261 TCTAACACCAGGATTAGAAAACATTCCCATATAACAAGAATTTCTTCAAAAGATCAACAGCCATA
*
45444748 GAAATTTTTTTTTCTGAGAACGGATAAATACATAGAACATCTTAGAAGAAACTGTC
326 GAAA--TTTTTTTCTGAGAACGGATAAATACATAGAACATCTCAGAAGAAACTGTC
45444804 AGGAAAATATAGAAGATCTCAAAAATTCCTCAGAGAAAAGAAGTCCAGAAGAAAACATCATTTAA
1 AGGAAAATATAGAAGATCTCAAAAATTCCTCAGAGAAAAGAAGTCCAGAAGAAAACATCATTTAA
*
45444869 TCCCACTGGAATCAAATATAACAAGAACAATGTATCTTCCCATACATATATATCAAATGGAGCAT
66 TCCCACTGGAACCAAATATAACAAGAACAATGTATCTTCCCATACATATATATCAAATGGAGCAT
45444934 TAAGTAGAAGAAACAATATCATAATATCATACATATCCTCTCGTCAATTCTTATCAGACGAAATG
131 TAAGTAGAAGAAACAATATCATAATATCATACATATCCTCTCGTCAATTCTTATCAGACGAAATG
*
45444999 TAATAAAATGCCTGAGGAAATACATTAATACAAATTATAAACCAGTCGGACTACCAATGCATCCA
196 TAATAAAATGCCTGAGGAAATACATTAATACAAATTATAAACCAGTCGGACTACCAAGGCATCCA
45445064 TCTAACACCAGGATTAGAAAACATTCCCATATAACAAGAATTTCTTCAAAAGATCAACAGCCATA
261 TCTAACACCAGGATTAGAAAACATTCCCATATAACAAGAATTTCTTCAAAAGATCAACAGCCATA
45445129 GAAATTTTTTTCTGAGAACGGATAAATACATAGAACATCTCAGAAGAAACTGT
326 GAAATTTTTTTCTGAGAACGGATAAATACATAGAACATCTCAGAAGAAACTGT
45445182 TAAATCTGTC
Statistics
Matches: 375, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
379 48 0.13
381 327 0.87
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.25
Consensus pattern (379 bp):
AGGAAAATATAGAAGATCTCAAAAATTCCTCAGAGAAAAGAAGTCCAGAAGAAAACATCATTTAA
TCCCACTGGAACCAAATATAACAAGAACAATGTATCTTCCCATACATATATATCAAATGGAGCAT
TAAGTAGAAGAAACAATATCATAATATCATACATATCCTCTCGTCAATTCTTATCAGACGAAATG
TAATAAAATGCCTGAGGAAATACATTAATACAAATTATAAACCAGTCGGACTACCAAGGCATCCA
TCTAACACCAGGATTAGAAAACATTCCCATATAACAAGAATTTCTTCAAAAGATCAACAGCCATA
GAAATTTTTTTCTGAGAACGGATAAATACATAGAACATCTCAGAAGAAACTGTC
Found at i:45449958 original size:33 final size:33
Alignment explanation
Indices: 45449921--45449987 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
45449911 TCCGGTAGCT
45449921 TTATGTCGTCCTATTTCTAAGATTGCAATCAAC
1 TTATGTCGTCCTATTTCTAAGATTGCAATCAAC
*
45449954 TTATGTCGTCCTATTTCTAGGATTGCAATCAAC
1 TTATGTCGTCCTATTTCTAAGATTGCAATCAAC
45449987 T
1 T
45449988 CCGCTTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (33 bp):
TTATGTCGTCCTATTTCTAAGATTGCAATCAAC
Found at i:45452265 original size:6 final size:6
Alignment explanation
Indices: 45452247--45452299 Score: 61
Period size: 6 Copynumber: 8.3 Consensus size: 6
45452237 ATATAAAGAC
* *
45452247 AAAATA AACATA AAAATA AAAATAA TAAAGATA AAAATA AAAATA AATATA
1 AAAATA AAAATA AAAATA AAAAT-A -AAA-ATA AAAATA AAAATA AAAATA
45452298 AA
1 AA
45452300 TATAGATGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 31 0.76
7 4 0.10
8 4 0.10
9 2 0.05
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:45452275 original size:21 final size:21
Alignment explanation
Indices: 45452249--45452292 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
45452239 ATAAAGACAA
45452249 AATAAACATAAAAATAAAAAT
1 AATAAACATAAAAATAAAAAT
*
45452270 AATAAAGATAAAAATAAAAAT
1 AATAAACATAAAAATAAAAAT
45452291 AA
1 AA
45452293 ATATAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (21 bp):
AATAAACATAAAAATAAAAAT
Found at i:45453981 original size:11 final size:11
Alignment explanation
Indices: 45453965--45453990 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45453955 CACAATAATC
45453965 ATAAAGAAATA
1 ATAAAGAAATA
45453976 ATAAAGAAATA
1 ATAAAGAAATA
45453987 ATAA
1 ATAA
45453991 GAATGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (11 bp):
ATAAAGAAATA
Found at i:45454014 original size:9 final size:9
Alignment explanation
Indices: 45453972--45454022 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
45453962 ATCATAAAGA
45453972 AATAATAAAG
1 AATAAT-AAG
45453982 AAATAATAAG
1 -AATAATAAG
*
45453992 AATGATAATG
1 AATAATAA-G
*
45454002 -ATAATAAC
1 AATAATAAG
45454010 AATAATAAG
1 AATAATAAG
45454019 AATA
1 AATA
45454023 GCAATAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 24 0.71
10 4 0.12
11 6 0.18
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.24
Consensus pattern (9 bp):
AATAATAAG
Found at i:45454413 original size:25 final size:24
Alignment explanation
Indices: 45454381--45454434 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
45454371 AGAGGAAGCA
* *
45454381 AAAGGAAAAAAAGAGGGAGGGGGG
1 AAAGGAAAAAAAGAGGAAGAGGGG
* *
45454405 AAAGAGAAAGAAGGAGGAAGAGGGG
1 AAAG-GAAAAAAAGAGGAAGAGGGG
45454430 AAAGG
1 AAAGG
45454435 GGAGAGAGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (24 bp):
AAAGGAAAAAAAGAGGAAGAGGGG
Found at i:45458185 original size:30 final size:30
Alignment explanation
Indices: 45458151--45458208 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
45458141 TAGGCACCTC
*
45458151 CACACGGGTAATCCACACACCCGTGTGTGA
1 CACACGGGTAAGCCACACACCCGTGTGTGA
* *
45458181 CACACGGGTAGGCCACACACCTGTGTGT
1 CACACGGGTAAGCCACACACCCGTGTGT
45458209 CATGGCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTAAGCCACACACCCGTGTGTGA
Found at i:45477126 original size:39 final size:39
Alignment explanation
Indices: 45477083--45477160 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
45477073 TAATAAACAT
* * *
45477083 CTTGCACTAAAACAGTTTTGGACAGCAGTAGTAAGCTAA
1 CTTGCACTAAAACAATTTTGAACAGCAGCAGTAAGCTAA
* *
45477122 CTTGCACTAAAATAATTTTGAACAGTAGCAGTAAGCTAA
1 CTTGCACTAAAACAATTTTGAACAGCAGCAGTAAGCTAA
45477161 TTTTGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (39 bp):
CTTGCACTAAAACAATTTTGAACAGCAGCAGTAAGCTAA
Found at i:45478048 original size:27 final size:27
Alignment explanation
Indices: 45478018--45478076 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
45478008 AATATTTATG
45478018 TATGTTAATTTTTGAAAATAAGTAAAT
1 TATGTTAATTTTTGAAAATAAGTAAAT
45478045 TATGTTAATTTTTGAAAATAAGTAAAT
1 TATGTTAATTTTTGAAAATAAGTAAAT
45478072 TATGT
1 TATGT
45478077 ACAAAAGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (27 bp):
TATGTTAATTTTTGAAAATAAGTAAAT
Found at i:45478350 original size:39 final size:39
Alignment explanation
Indices: 45478305--45478441 Score: 184
Period size: 39 Copynumber: 3.5 Consensus size: 39
45478295 CTGATGAGCA
* * *
45478305 TCAGTTAGTCTTCGGGCTTCTGTTTAGCACTTTTGTGTT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* * *
45478344 TCAGTTAGCCTTTGGGCTTTTGTTTAGCACTTGTGTGCT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* *
45478383 TCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* *
45478422 TCAGCTAGACTTCGGGCTTC
1 TCAGTTAGCCTTCGGGCTTC
45478442 AGATCACGAT
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.12, C:0.22, G:0.23, T:0.42
Consensus pattern (39 bp):
TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
Found at i:45480028 original size:27 final size:27
Alignment explanation
Indices: 45479998--45480056 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
45479988 AATATTTATG
45479998 TATGTTAATTTTTGAAAATAAGTAAAT
1 TATGTTAATTTTTGAAAATAAGTAAAT
45480025 TATGTTAATTTTTGAAAATAAGTAAAT
1 TATGTTAATTTTTGAAAATAAGTAAAT
45480052 TATGT
1 TATGT
45480057 ACAAAAGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (27 bp):
TATGTTAATTTTTGAAAATAAGTAAAT
Found at i:45480330 original size:39 final size:39
Alignment explanation
Indices: 45480285--45480421 Score: 184
Period size: 39 Copynumber: 3.5 Consensus size: 39
45480275 CTGATGAGCA
* * *
45480285 TCAGTTAGTCTTCGGGCTTCTGTTTAGCACTTTTGTGTT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* * *
45480324 TCAGTTAGCCTTTGGGCTTTTGTTTAGCACTTGTGTGCT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* *
45480363 TCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCT
1 TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
* *
45480402 TCAGCTAGACTTCGGGCTTC
1 TCAGTTAGCCTTCGGGCTTC
45480422 AGATCACGAT
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.12, C:0.22, G:0.23, T:0.42
Consensus pattern (39 bp):
TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGTGCT
Found at i:45484581 original size:15 final size:15
Alignment explanation
Indices: 45484561--45484597 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
45484551 GTGTTACACT
45484561 CACTTCGGGTTTTAC
1 CACTTCGGGTTTTAC
45484576 CACTTCGGGTTTTAC
1 CACTTCGGGTTTTAC
*
45484591 CTCTTCG
1 CACTTCG
45484598 TCCTTTTCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.30, G:0.19, T:0.41
Consensus pattern (15 bp):
CACTTCGGGTTTTAC
Found at i:45487826 original size:2 final size:2
Alignment explanation
Indices: 45487819--45487844 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45487809 TAAAATGGGT
45487819 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
45487845 AGCAAAACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45497435 original size:11 final size:11
Alignment explanation
Indices: 45497419--45497446 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
45497409 GGAAAGAATC
45497419 CACCTAGACTT
1 CACCTAGACTT
45497430 CACCTAGACTT
1 CACCTAGACTT
45497441 CACCTA
1 CACCTA
45497447 TTATTCTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.39, G:0.07, T:0.25
Consensus pattern (11 bp):
CACCTAGACTT
Found at i:45497625 original size:58 final size:58
Alignment explanation
Indices: 45497535--45497650 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
45497525 TTCGAGAGTA
* *
45497535 AGAACAACTGACTCTAGGTTGATTAATTGAAATCTCTTTCTAATTAAAACCGCTATTG
1 AGAACAACTGACTCTAAGTTGATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTG
45497593 AGAACAACTGACTCTAAGTTGATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTG
1 AGAACAACTGACTCTAAGTTGATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTG
45497651 TTGTATTAAC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (58 bp):
AGAACAACTGACTCTAAGTTGATTAATTGAAATCTCTTTCTAATTAAAACCCCTATTG
Found at i:45500439 original size:13 final size:13
Alignment explanation
Indices: 45500421--45500447 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45500411 GATTATGTTG
45500421 AATGGCACAAATT
1 AATGGCACAAATT
45500434 AATGGCACAAATT
1 AATGGCACAAATT
45500447 A
1 A
45500448 TCAACTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (13 bp):
AATGGCACAAATT
Found at i:45503553 original size:39 final size:40
Alignment explanation
Indices: 45503458--45503641 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
45503448 TTGAATGATG
*
45503458 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAA-A
* *
45503497 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAAA
*
45503537 TCCGGGCTAAG-CCCGAAGGCATTTGTACG-AGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAAA
* *
45503576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTA-AA
*
45503617 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45503642 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
39 52 0.42
40 59 0.48
41 13 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAAA
Found at i:45503663 original size:79 final size:79
Alignment explanation
Indices: 45503510--45503674 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
45503500 GGACTAAGAT
* * *
45503510 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
45503575 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
45503589 CCGAAGGCATTTGTGCGA-ATTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
45503651 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
45503668 CCGAAGG
1 CCGAAGG
45503675 TACGTGATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 46 0.61
80 28 0.37
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:45504130 original size:60 final size:60
Alignment explanation
Indices: 45504037--45504153 Score: 234
Period size: 60 Copynumber: 1.9 Consensus size: 60
45504027 CCAGCTATCA
45504037 GACTCGGGATCTTGAGGTCAAAGTCGCCCACACTATCAAAGCCCCCTTTTGGTACAATTG
1 GACTCGGGATCTTGAGGTCAAAGTCGCCCACACTATCAAAGCCCCCTTTTGGTACAATTG
45504097 GACTCGGGATCTTGAGGTCAAAGTCGCCCACACTATCAAAGCCCCCTTTTGGTACAA
1 GACTCGGGATCTTGAGGTCAAAGTCGCCCACACTATCAAAGCCCCCTTTTGGTACAA
45504154 AATTGCTTAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (60 bp):
GACTCGGGATCTTGAGGTCAAAGTCGCCCACACTATCAAAGCCCCCTTTTGGTACAATTG
Found at i:45511468 original size:39 final size:40
Alignment explanation
Indices: 45511373--45511634 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
45511363 TTGAATGATG
*
45511373 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
45511411 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
45511452 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
45511491 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
45511530 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
45511569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
45511608 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
45511635 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:45533618 original size:30 final size:30
Alignment explanation
Indices: 45533560--45533618 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
45533550 ATTTTTGAGA
* **
45533560 CTAGGGGTAAAATAGTCATTTTGTCAAAGT
1 CTAGGGGAAAAATAGTCATTTTACCAAAGT
*
45533590 CTAGGGGAAAAATGGTCATTTTACCAAAG
1 CTAGGGGAAAAATAGTCATTTTACCAAAG
45533619 ATATAAACTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATAGTCATTTTACCAAAGT
Found at i:45537214 original size:25 final size:25
Alignment explanation
Indices: 45537184--45537233 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
45537174 GCTCGTGAAT
*
45537184 GTGTTTTTTCTGAAGCTATAATGTG
1 GTGTTTCTTCTGAAGCTATAATGTG
45537209 GTGTTTCTTCTGAAGCTATAATGTG
1 GTGTTTCTTCTGAAGCTATAATGTG
45537234 TAAAAGGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.24, T:0.46
Consensus pattern (25 bp):
GTGTTTCTTCTGAAGCTATAATGTG
Found at i:45545069 original size:12 final size:12
Alignment explanation
Indices: 45545052--45545081 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
45545042 TATACAAGTT
*
45545052 AAAAAAAATTTG
1 AAAAAAAATTCG
45545064 AAAAAAAATTCG
1 AAAAAAAATTCG
45545076 AAAAAA
1 AAAAAA
45545082 CTCTGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:45545684 original size:18 final size:19
Alignment explanation
Indices: 45545661--45545699 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
45545651 TTTATTTCAA
*
45545661 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
45545679 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
45545698 TT
1 TT
45545700 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:45545837 original size:5 final size:5
Alignment explanation
Indices: 45545827--45545883 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
45545817 CTTTTGCCTC
*
45545827 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TACTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
45545874 TCTTT TCTTT
1 TCTTT TCTTT
45545884 GTTTTCTCGT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:45545867 original size:15 final size:14
Alignment explanation
Indices: 45545827--45545883 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
45545817 CTTTTGCCTC
*
45545827 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
45545842 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
45545857 TCTTTTACTTTTTCTTT
1 TCTTTT-CTTTTTC--T
45545874 TCTTTTCTTT
1 TCTTTTCTTT
45545884 GTTTTCTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:45548264 original size:36 final size:37
Alignment explanation
Indices: 45548204--45548281 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
45548194 TTATTACGAA
* *
45548204 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
45548241 GTCTTA-CCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCATCGG
45548277 GTCTT
1 GTCTT
45548282 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 1 0.03
36 30 0.81
37 6 0.16
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:45548478 original size:47 final size:47
Alignment explanation
Indices: 45548400--45548888 Score: 870
Period size: 47 Copynumber: 10.4 Consensus size: 47
45548390 CCCTTCGAGA
* * * * * * * *
45548400 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45548447 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548494 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548541 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548588 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548635 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548682 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548729 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548776 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45548823 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45548870 CTTATCACATATATACACT
1 CTTATTACATATATACACT
45548889 GTCTTGGCTG
Statistics
Matches: 429, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 429 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45565009 original size:19 final size:19
Alignment explanation
Indices: 45564981--45565027 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
45564971 CTAGGGTTCG
* *
45564981 TTTTATAAAAACTACTTGT
1 TTTTAAAAAAACTACCTGT
45565000 TTTTAAAAAAAACTACCTGT
1 TTTT-AAAAAAACTACCTGT
45565020 TTTTAAAA
1 TTTTAAAA
45565028 GATCAAGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (19 bp):
TTTTAAAAAAACTACCTGT
Found at i:45565012 original size:20 final size:20
Alignment explanation
Indices: 45564987--45565027 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
45564977 TTCGTTTTAT
*
45564987 AAAAACTACTTGTTTTTAAA
1 AAAAACTACCTGTTTTTAAA
45565007 AAAAACTACCTGTTTTTAAA
1 AAAAACTACCTGTTTTTAAA
45565027 A
1 A
45565028 GATCAAGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAAACTACCTGTTTTTAAA
Found at i:45574846 original size:20 final size:20
Alignment explanation
Indices: 45574805--45574843 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
45574795 ATGTGTATTT
45574805 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
45574825 TGAATGTTTGTTGATAGAT
1 TGAA-GTTTCTTGATAGAT
45574844 ATGCAATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:45574855 original size:20 final size:21
Alignment explanation
Indices: 45574814--45574856 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
45574804 TTGAAGTTTC
*
45574814 TTGATAGATTATGAATGTTTG
1 TTGATAGATTATGAATGCTTG
45574835 TTGATAGA-TATGCAAT-CTTG
1 TTGATAGATTATG-AATGCTTG
45574855 TT
1 TT
45574857 AAGTGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.47
Consensus pattern (21 bp):
TTGATAGATTATGAATGCTTG
Found at i:45578833 original size:68 final size:68
Alignment explanation
Indices: 45578685--45578840 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
45578675 AGCCTATTTG
* * * **
45578685 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACACA
*
45578750 TATC
65 TAGC
* *
45578754 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
45578816 ACATAGC
62 ACATAGC
*
45578823 ATCTCGTAGCTTTCTTGT
1 -TCTCGTAGCTCTCTTGT
45578841 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 35 0.48
69 7 0.10
70 5 0.07
71 26 0.36
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACACAT
AGC
Found at i:45599421 original size:31 final size:31
Alignment explanation
Indices: 45599379--45599488 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
45599369 CTTGACATTT
*
45599379 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
45599410 ACTAGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
45599441 ACTGGGCCGAAGCCTTTTTATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
45599472 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
45599489 ACTGTAAACG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:45599736 original size:25 final size:25
Alignment explanation
Indices: 45599708--45599777 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
45599698 CTCTTTTAAT
*
45599708 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
45599733 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
45599758 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
45599778 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:45600615 original size:27 final size:27
Alignment explanation
Indices: 45600585--45600649 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
45600575 GGACATATTC
*
45600585 GTCATTTTACCATACA-AGGGTATTACG
1 GTCATTTTACCATACAGAGGCT-TTACG
* *
45600612 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACG
*
45600639 GTCTTTTTACC
1 GTCATTTTACC
45600650 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACG
Found at i:45600733 original size:27 final size:27
Alignment explanation
Indices: 45600700--45600908 Score: 143
Period size: 27 Copynumber: 7.7 Consensus size: 27
45600690 TTGGTAAATC
45600700 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** * *
45600727 TGTAAACTAATGGTATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * *
45600755 TAGAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** * * **
45600783 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*** **
45600810 TACAAATTGAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*
45600837 CACAAACC-AGTGGTATTTCAGTAATTT
1 TACAAACCAAG-GGTATTTCAGTAATTT
* * **
45600864 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
45600891 TACAAACTAGGGGTATTT
1 TACAAACCAAGGGTATTT
45600909 TGGTAATTCT
Statistics
Matches: 146, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.01
27 115 0.79
28 16 0.11
29 13 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:45600883 original size:81 final size:81
Alignment explanation
Indices: 45600767--45600916 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
45600757 GAAAGTCAAG
* ** *
45600767 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGG
1 GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGG
45600831 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
45600848 GGTATTTCAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
45600912 TAATT
65 TAATT
45600917 CTATCTTATA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
80 1 0.02
81 60 0.95
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
AATTTCACAAACCAGT
Found at i:45600909 original size:27 final size:27
Alignment explanation
Indices: 45600766--45600916 Score: 182
Period size: 27 Copynumber: 5.6 Consensus size: 27
45600756 AGAAAGTCAA
**
45600766 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
45600793 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
45600819 AGGGTATTTTGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* **
45600847 TGGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
45600874 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
45600901 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
45600917 CTATCTTATA
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 104 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:45600929 original size:54 final size:53
Alignment explanation
Indices: 45600766--45600935 Score: 182
Period size: 54 Copynumber: 3.2 Consensus size: 53
45600756 AGAAAGTCAA
** *
45600766 GGGTATTTCT-GTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTT-TGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATAG
* * * **
45600819 AGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTCAGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-TAG
* **
45600874 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCTTATAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTA-CAAATAG
45600928 GGGTATTT
1 GGGTATTT
45600936 CAATAATTTC
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
53 1 0.01
54 91 0.95
55 4 0.04
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:45600943 original size:81 final size:81
Alignment explanation
Indices: 45600791--45600949 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
45600781 TTTGTAAATC
* *
45600791 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTC
* *
45600856 AGTAATTTTACAAACT
66 AATAATTTCACAAACT
** *
45600872 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCTTA-TAGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTC-A-CAAACCAGGGGTAT
45600934 TTCAATAATTTCACAA
63 TTCAATAATTTCACAA
45600950 TCGAGGGTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
80 3 0.04
81 61 0.90
82 4 0.06
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTC
AATAATTTCACAAACT
Found at i:45600982 original size:27 final size:27
Alignment explanation
Indices: 45600952--45601091 Score: 158
Period size: 27 Copynumber: 5.2 Consensus size: 27
45600942 TTTCACAATC
*
45600952 GAGGGTAAAACGGTAATTTTGTAAACT-
1 GAGGGTAAAACGGTAATTTTATAAA-TA
* *
45600979 GAGGGTAAAATGGTAATTTTGTAAATTA
1 GAGGGTAAAACGGTAATTTTATAAA-TA
*
45601007 -AGGGTAAAACGGTAATTTTATAAATC
1 GAGGGTAAAACGGTAATTTTATAAATA
* *
45601033 GAGGGTGAAACGGTAATTCTATAAATA
1 GAGGGTAAAACGGTAATTTTATAAATA
* * * *
45601060 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACGGTAATTTTATAAATA
45601087 GAGGG
1 GAGGG
45601092 CATTTTAATA
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.99
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTATAAATA
Found at i:45601022 original size:54 final size:54
Alignment explanation
Indices: 45600952--45601091 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
45600942 TTTCACAATC
* * * *
45600952 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATTA
1 GAGGGTAAAACGGTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTATAAA-TA
*
45601007 -AGGGTAAAACGGTAATTTTATAAATCGAGGGTGAAACGGTAATTCTATAAATA
1 GAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATA
* * *
45601060 GAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 GAGGGTAAAACGGTAATTTTATAAATCGAGGG
45601092 CATTTTAATA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 2 0.03
54 72 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (54 bp):
GAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATA
Found at i:45602737 original size:56 final size:56
Alignment explanation
Indices: 45602651--45602770 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
45602641 ACAAGGGATG
45602651 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
45602707 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
45602763 ATGGGCAA
1 ATGGGCAA
45602771 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:45604269 original size:47 final size:47
Alignment explanation
Indices: 45604215--45604632 Score: 502
Period size: 47 Copynumber: 8.6 Consensus size: 47
45604205 TATTTGAATA
*
45604215 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
45604262 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
45604309 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** * *
45604356 AATGTGAACA-TGCGTATGTGTGATAAGGCCGAATGACAAGGCCTAATGGCCGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAAT-----GGCC-AAT-G-TGATG
* *
45604411 TAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 --A---ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
45604465 AATGTGAACATGTGTATGTA--TGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
45604512 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
45604559 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
45604606 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45604633 TCCCGAAGGG
Statistics
Matches: 325, Mismatches: 24, Indels: 44
0.83 0.06 0.11
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 248 0.76
48 1 0.00
49 12 0.04
50 1 0.00
51 3 0.01
52 5 0.02
53 3 0.01
54 5 0.02
55 5 0.02
56 2 0.01
57 5 0.02
59 1 0.00
60 9 0.03
62 18 0.06
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:45604475 original size:109 final size:107
Alignment explanation
Indices: 45604286--45604593 Score: 378
Period size: 109 Copynumber: 3.0 Consensus size: 107
45604276 TATATGTGAT
*
45604286 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
*
45604351 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGAC
66 TGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGAC
* *
45604393 AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAA
*
45604458 TGTGATGAATGTGAACATGTGTATGTATGATAAGGCCGAAT---
64 TGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGAC
* *
45604499 --GGCC-AAT----G-TG--ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAAT
1 AAGGCCTAATGGCCGATGTAATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAAT
* *
45604553 GTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCGAATG
65 GTGATGAATGTGAACATGCGTATGTA--TGATAAGGCCGAATG
45604594 GCCAATGTGA
Statistics
Matches: 185, Mismatches: 10, Indels: 24
0.84 0.05 0.11
Matches are distributed among these distances:
92 8 0.04
93 1 0.01
94 53 0.29
96 13 0.07
97 1 0.01
98 2 0.01
99 1 0.01
103 3 0.02
104 4 0.02
107 34 0.18
109 65 0.35
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (107 bp):
AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
TGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGAC
Found at i:45604521 original size:156 final size:153
Alignment explanation
Indices: 45604239--45604632 Score: 537
Period size: 156 Copynumber: 2.6 Consensus size: 153
45604229 TATATGTGAT
*
45604239 AAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 AAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
45604304 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
66 TGATGAATGTGAAAGTGTATATA-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* * *
45604369 GTATGTGTGATAAGGCCGAATGAC
130 ATATATGAGATAAGGCCGAATGAC
*
45604393 AAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 AAGGCCTAATGGCCAATGTAATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
*
45604458 TGTGATGAATGTGAACATGTGTATGTA-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
64 TGTGATGAATGTGAA-A-GTGTATATAGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
45604522 TGCATATATGAGATAAGGCCGAAT---
127 TGCATATATGAGATAAGGCCGAATGAC
* *
45604546 --GGCC-AAT-G----TG--ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 AAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * *
45604601 TGATGGATGTGGAAGTGTATAAATGTGATAAG
66 TGATGAATGTGAAAGTGTATATA-GTGATAAG
45604633 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 12, Indels: 25
0.86 0.05 0.10
Matches are distributed among these distances:
139 7 0.03
140 1 0.00
141 46 0.21
143 15 0.07
145 2 0.01
149 1 0.00
150 3 0.01
151 4 0.02
154 33 0.15
156 101 0.45
157 1 0.00
158 8 0.04
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (153 bp):
AAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATAGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATATGAGATAAGGCCGAATGAC
Found at i:45604583 original size:203 final size:200
Alignment explanation
Indices: 45604215--45604593 Score: 593
Period size: 203 Copynumber: 1.9 Consensus size: 200
45604205 TATTTGAATA
45604215 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
45604280 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 -GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAATGG
* *
45604345 CCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACAAGGCCTAATGGCCGAT
130 CCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACAAGGCCTAATGGCCGAT
45604410 GTAATG
195 GTAATG
*
45604416 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-A-GTGTA
*
45604481 TGTA-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGA
62 TATAGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATATATGAGATAAGGCCGA
*
45604544 ATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATG
126 ATGGCCAATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAATG
45604594 GCCAATGTGA
Statistics
Matches: 163, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
201 12 0.07
202 1 0.01
203 140 0.86
204 2 0.01
205 8 0.05
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (200 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAATGGC
CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACAAGGCCTAATGGCCGATG
TAATG
Found at i:45605589 original size:75 final size:76
Alignment explanation
Indices: 45605442--45605592 Score: 277
Period size: 75 Copynumber: 2.0 Consensus size: 76
45605432 TTAAATGCTT
45605442 ACTCCGTTCTTTGAATCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCGGACTCAGGATTATTG
1 ACTCCGTTCTTTGAATCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCGGACTCAGGATTATTG
*
45605507 AATTCGAAGTC
66 AAGTCGAAGTC
*
45605518 ACTCCGTTCTTTGAATCTCTGTTTTATAGATTTT-GTTCGTCAGCTATCGGACTCGGGATTATTG
1 ACTCCGTTCTTTGAATCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCGGACTCAGGATTATTG
45605582 AAGTCGAAGTC
66 AAGTCGAAGTC
45605593 GCCCACACTA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 39 0.53
76 34 0.47
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (76 bp):
ACTCCGTTCTTTGAATCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCGGACTCAGGATTATTG
AAGTCGAAGTC
Found at i:45623975 original size:56 final size:56
Alignment explanation
Indices: 45623915--45624054 Score: 201
Period size: 56 Copynumber: 2.5 Consensus size: 56
45623905 ATCCTAGACA
* *
45623915 TGGTCTTACTCACACATATATATCGGAGTCACATATCGATGCCAACGTATTAAATG
1 TGGTCTTACTCACACATATATATCGGAGTCACATATCAATGCCAACGTATTAAACG
* *
45623971 TGGTCTTACT-AGCACACATATATCAGAGTCACATATCAATGCCAACGTATTAAACG
1 TGGTCTTACTCA-CACATATATATCGGAGTCACATATCAATGCCAACGTATTAAACG
* *
45624027 TGGTCTTACTCTCACATCACATATCGGA
1 TGGTCTTACTCACACAT-ATATATCGGA
45624055 ATCCTATGTC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
55 1 0.01
56 64 0.88
57 8 0.11
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (56 bp):
TGGTCTTACTCACACATATATATCGGAGTCACATATCAATGCCAACGTATTAAACG
Found at i:45631903 original size:8 final size:8
Alignment explanation
Indices: 45631890--45631914 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45631880 AAACTAGCCC
45631890 TCACATTT
1 TCACATTT
45631898 TCACATTT
1 TCACATTT
45631906 TCACATTT
1 TCACATTT
45631914 T
1 T
45631915 GACACTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:45642934 original size:24 final size:25
Alignment explanation
Indices: 45642902--45642963 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 25
45642892 TTTGGTCCTA
*
45642902 AGCACCGCCGGGAA-AGCTCGCCAG
1 AGCACCGCCGGGAATAGATCGCCAG
* *
45642926 AGCACCGCC-GGAATGGATCGCCGG
1 AGCACCGCCGGGAATAGATCGCCAG
45642950 AGCACCGCCGGGAA
1 AGCACCGCCGGGAA
45642964 CCTAACCGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 4 0.12
24 25 0.76
25 4 0.12
ACGTcount: A:0.24, C:0.35, G:0.35, T:0.05
Consensus pattern (25 bp):
AGCACCGCCGGGAATAGATCGCCAG
Found at i:45643433 original size:58 final size:59
Alignment explanation
Indices: 45643364--45643485 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 59
45643354 GGGAGGGAGA
* *
45643364 GGGACGATTCATTCATTGTTGGGTACC-AGACATGCAACGGTATCTGAATTCTA-CCTTT
1 GGGATGATTCATTCATTATTGGGTACCGA-ACATGCAACGGTATCTGAATTCTAGCCTTT
* * *
45643422 GGGATGATTCATTCATTATTGGGTATCGAACATGTAACGGTATCTGAATTCTAGCTTTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTAGCCTTT
45643481 GGGAT
1 GGGAT
45643486 TGGGGAGGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
58 47 0.82
59 10 0.18
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTAGCCTTT
Found at i:45644100 original size:5 final size:5
Alignment explanation
Indices: 45644090--45644115 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
45644080 CGAATGAAGT
45644090 ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC A
45644116 CAGCAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:45644178 original size:192 final size:192
Alignment explanation
Indices: 45643849--45644325 Score: 688
Period size: 192 Copynumber: 2.5 Consensus size: 192
45643839 ACTTAGTATT
* * * * * *
45643849 TTTAACTGA-AAATTTTTTCTTTTGGCCCAAAAGAAATTCAAGAAGCCGAATGAA--AT---ATA
1 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTCGAATGAAGTATGGCATG
* *
45643908 GCAT-G-ATGGCACGGCACGGCAAAAAATTGAACAAGTGCCCGGACCGCCAACAGTTAGGAGCTC
66 GCATGGCATGGCACGGCACGGCAGAAAATTGAACAAGTACCCGGACCGCCAACAGTTAGGAGCTC
* * *
45643971 GCAACCGCACCACCACGGCGCCCGTTGTGCCATGTTT-CTAGAGGGGGCGACACGGCCAAGTG
131 GCAACCGCACCACCACGGCCCCCGTTGTGCCATGTTTCCCA-AAGGGGCGACACGGCCAAGTG
45644033 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTCGAATGAAGTATGGCATG
1 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTCGAATGAAGTATGGCATG
* * *
45644098 GCATGGCATGGCATGGCACAGCAGAAAATTGAACAAGTACCCGGACCGCCAACAGTTGGGAGCTC
66 GCATGGCATGGCACGGCACGGCAGAAAATTGAACAAGTACCCGGACCGCCAACAGTTAGGAGCTC
*
45644163 GC-ACCTGCACCACCACGGCCCCCGTTGTGCCATGTTTCCCAAAGGGGCGGCACGGCCAAGTG
131 GCAACC-GCACCACCACGGCCCCCGTTGTGCCATGTTTCCCAAAGGGGCGACACGGCCAAGTG
* *
45644225 TTTAACTTAGAAATTTTTTTTGTTGGCCCAAAACAAATACAAGAA-TCTGAATGAAGTATGGCTT
1 TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTC-GAATGAAGTATGGCAT
*
45644289 GGCATGGCATGGCACGGCACGGTAGAAAATTGAACAA
65 GGCATGGCATGGCACGGCACGGCAGAAAATTGAACAA
45644326 CAAATTACGA
Statistics
Matches: 262, Mismatches: 20, Indels: 14
0.89 0.07 0.05
Matches are distributed among these distances:
184 8 0.03
185 41 0.16
187 2 0.01
190 6 0.02
191 6 0.02
192 197 0.75
193 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (192 bp):
TTTAACTTAGAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGTCGAATGAAGTATGGCATG
GCATGGCATGGCACGGCACGGCAGAAAATTGAACAAGTACCCGGACCGCCAACAGTTAGGAGCTC
GCAACCGCACCACCACGGCCCCCGTTGTGCCATGTTTCCCAAAGGGGCGACACGGCCAAGTG
Found at i:45651289 original size:43 final size:43
Alignment explanation
Indices: 45651119--45652054 Score: 409
Period size: 43 Copynumber: 22.0 Consensus size: 43
45651109 TTTTCTTTAG
** * * *
45651119 CCCGCACATCCGAGGCACCAAGG-TGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
** * * *
45651162 CCCGCACATCCTA--CTTTCTAGGTTGCCTATGGTGTCCGAGGCT
1 CCCGCACATCC-AGGC-ACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * * *
45651205 CTCGCACATCCAAGCACCAAGG-TACCAATGCTGCTCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* *
45651247 TCCGCACATCCGAGGCACCAAGG-TGCCGATGGTGCCCAAGGCT
1 CCCGCACATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * ** * *
45651290 CCCGCATGA-CCAAGG-GCTTAGGTTGCCGATGGTGTCCTAGGCT
1 CCCGCA-CATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * *
45651333 CCCCCACATCTAAGCACCAAGG-TGCCGATGGTTCCCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
** * * * *
45651375 CTAGCATGATCAAGG--CCTAGGTTGCCGATGGTGCCCAAGGCT
1 CCCGCA-CATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* ** * *
45651417 CTCGCACGA-CCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
45651460 CCCACACGTCCAAGG-GCCTAGGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* *
45651503 CCCGCACATCCAAGCACCAAGG-TACCGATGGT-CCCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * * *
45651544 CTCGTACGA-CCAAGG-GCCTAGGTTGCCGATGGCGCCAGAGGCT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* ** * * * *
45651587 CCCGTAC-TACCAGGGGCCTAGGTTGTCGACGGTGCCTGAGGCT
1 CCCGCACAT-CCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * * * *
45651630 CCTGTATGA-CCAAAGG--CCTAGGTTACCGATGATGCCCAAGGCT
1 CCCGCA-CATCC--AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
45651673 CCCGCACGA-CCAAGG-GCCTAGG-AGCCGATGGTGTCCGAGGGT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * *
45651715 CCCGTACGA-CCAAGG-GCCTAGGTTGCCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * *
45651758 CCCGCACATCCAAGCACCAAGG-TGCCAAAGGTGCCCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
45651800 CCCGCACGA-CCAAGG-GCCTAGG-AGCCGATGGTGTCCGAGGGT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * *
45651842 CCCGTACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCTGAGGCT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
** * * * * *
45651885 CCCGCACGA-CCAGGGGCCTAGGTTGTCAATGGTGCTCGAGGGT
1 CCCGCAC-ATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * *
45651928 CCCGCACGA-CCAAGG-GCCTAGGTTACCGATGGCG-CCGAGGCT
1 CCCGCAC-ATCC-AGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
* * * *
45651970 CTCGGACATCCAAGCACCAAGG-TGTCGATGGT-CCTCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCC-CGAGGCT
* * * *
45652012 CCCGTACATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCT
1 CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
45652054 C
1 C
45652055 TCATACCATC
Statistics
Matches: 701, Mismatches: 149, Indels: 87
0.75 0.16 0.09
Matches are distributed among these distances:
41 41 0.06
42 278 0.40
43 371 0.53
44 8 0.01
45 3 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCAGGCACCAAGGTTGCCGATGGTGCCCGAGGCT
Found at i:45651449 original size:127 final size:127
Alignment explanation
Indices: 45651179--45652015 Score: 682
Period size: 127 Copynumber: 6.6 Consensus size: 127
45651169 ATCCTACTTT
* * * ** * * * * * *
45651179 CTAGGTTGCCTATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGG-TACCAATGCTGCTCGA
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGGGCCTAGGTTGCCGATGGTTCCCGA
* * * * *
45651243 GGCTTCCGCACATCCGAGGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGC
66 GGCTCCCGCAGAT-CAAGG--CCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGC
* * ** * ** *
45651307 TTAGGTTGCCGATGGTGTCCTAGGCTCCCCCACATCTAAGCACCAAGG-TGCCGATGGTTCCCGA
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGGGCCTAGGTTGCCGATGGTTCCCGA
** * *
45651371 GGCTCTAGCATGATCAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCACGACCAGGGGC
66 GGCTCCCGCA-GATCAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGC
* * ** *
45651434 CTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGTTGCCGATGGTGT-CCG
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGGGCCTAGGTTGCCGATGGT-TCCCG
* * * * * * *
45651498 AGGCTCCCGCACATCCAAGCACCAAGG-TACCGATGGT-CCCGAGGCTCTCGTACGACCAAGGGC
65 AGGCTCCCGCAGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGC
* * * * * *
45651561 CTAGGTTGCCGATGGCG-CCAGAGGCTCCCGTAC-TACCAGGGGCCTAGGTTGTCGACGGTGCCT
1 CTAGGTTGCCGATGGTGTCC-GAGGCTCCCGTACAT-CCAAGGGCCTAGGTTGCCGATGGTTCCC
* * * * *
45651624 GAGGCTCCTGTATGACCAAAGGCCTAGGTTACCGATGATGCCCAAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCA-GATC-AAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
45651689 C
127 C
* *
45651690 CTAGG-AGCCGATGGTGTCCGAGGGTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGT-CC
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGGGCCTAGGTTGCCGATGGT-TCCC
* * * * * *
45651752 GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCAGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG
45651816 C
127 C
* * * *
45651817 CTAGG-AGCCGATGGTGTCCGAGGGTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTG
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGGGCCTAGGTTGCCGATGGTTCCCG
* * * * * * *
45651880 AGGCTCCCGCACGACCAGGGGCCTAGGTTGTCAATGGTGCTCGAGGGTCCCGCACGACCAAGGGC
65 AGGCTCCCGCA-GATCA-AGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGC
* * * * ** * *
45651945 CTAGGTTACCGATGGCG-CCGAGGCTCTCGGACATCCAAGCACCAAGG-TGTCGATGG-TCCTCG
1 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGGGCCTAGGTTGCCGATGGTTCC-CG
45652007 AGGCTCCCG
65 AGGCTCCCG
45652016 TACATCCAAG
Statistics
Matches: 583, Mismatches: 100, Indels: 53
0.79 0.14 0.07
Matches are distributed among these distances:
126 10 0.02
127 294 0.50
128 233 0.40
129 46 0.08
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (127 bp):
CTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCAAGGGCCTAGGTTGCCGATGGTTCCCGA
GGCTCCCGCAGATCAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGC
Found at i:45651488 original size:170 final size:171
Alignment explanation
Indices: 45651270--45652056 Score: 754
Period size: 170 Copynumber: 4.6 Consensus size: 171
45651260 GGCACCAAGG
* * * *
45651270 TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGCTTAGGTTGCCGATGGTGTCCTAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
* * * * *
45651335 CCCACATCTAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTAGCATGATCAA-GGCCTAGGTTG
66 CGCACATCCAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
* *
45651399 CCGATGGTGCCCAAGGCTCTCGCACGACCAGGGGCCTAGGT
131 CCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
45651440 TGCCAATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
* *
45651505 CGCACATCCAAGCACCAAGGTACCGATGG-TCCCGAGGCTCTCGTACGACCAAGGGCCTAGGTTG
66 CGCACATCCAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
* * * *
45651569 CCGATGGCG-CCAGAGGCTCCCGTACTACCAGGGGCCTAGGT
131 CCGATGGTGCCCA-AGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * * * * * * *
45651610 TGTCGACGGTGCCTGAGGCTCCTGTATGACCAAAGGCCTAGGTTACCGATGATGCCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
** * * * * *
45651675 CGCACGA-CCAAGGGCCTAGGAGCCGATGGTGT-CCGAGGGTCCCGTACGACCAAGGGCCTAGGT
66 CGCAC-ATCCAAGCACCAAGGTGCCGATGGT-TCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * ** *
45651738 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
129 TGCCGATGGTGCCCAAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * *
45651780 TGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-AGCCGATGGTGTCCGAGGGTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
* ** * * * * *
45651844 CGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
66 CGCAC-ATCCAAGCACCAAGG-TGCCGATGGTTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * * * *
45651908 TGTCAATGGTGCTCGAGGGTCCCGCACGACCAAGGGCCTAGGT
129 TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * ** * * *
45651951 TACCGATGGCG-CCGAGGCTCTCGGAC-ATCCAAGCACCAAGG-TGTCGATGGT-CCTCGAGGCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC-CGAGGCT
* * * *
45652012 CCCGTACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCTC
64 CCCGCACATCCAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTC
45652057 ATACCATCGA
Statistics
Matches: 508, Mismatches: 95, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
169 79 0.16
170 358 0.70
171 68 0.13
172 3 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (171 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
CGCACATCCAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
CCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:45652076 original size:212 final size:212
Alignment explanation
Indices: 45651275--45652085 Score: 584
Period size: 212 Copynumber: 3.8 Consensus size: 212
45651265 CAAGGTGCCG
* * * * * * * * *
45651275 ATGGTGCCCAAGGCTCCCGCATGACCAAGGGCTTAGGTTGCCGATGGTGTCCTAGGCTCCCCCAC
1 ATGGTGTCCGAGGGTCCCGCACGACCAAGGGCCTAGGTTACCGATGGCGTCCGAGGCTCCCGCAC
* * * * ** * * * * *
45651340 ATCTAAGCACCAAGGTGCCGATGGTTCCCGAGGCTCTAGCATGATCAAG-GCCTAGGTTGCCGAT
66 ATCCAAGCACCAAGGTGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGG-AGCCGAT
* * * * ** * ** * * * *
45651404 GGTGCCCAAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGT
130 GCTGTCCGAGGCTCCCATACCACCAACGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGA
* *
45651469 CCAAGGGCCTAGGTTGCCG
195 CCAAGGGCCTAGG-AGCCA
* ** * * *
45651488 ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGAT-G-GTCCCGAGGCTCTCGT
1 ATGGTGTCCGAGGGTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGCGT-CCGAGGCTCCCGC
** * * * * * * * * ** * * *
45651549 ACGA-CCAAGGGCCTAGGTTGCCGATGGCGCCAGAGGCTCCCGTACTACCAGGGGCCTAGGTTGT
64 AC-ATCCAAGCACCAAGG-TGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGG-AGC
* * ** ** * * *
45651613 CGACGGTG-CCTGAGGCTCCTGTATGACCAAAGGCCTAGGTTACCGATGATGCCCAAGGCTCCCG
126 CGATGCTGTCC-GAGGCTCCCATACCACCAACGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCG
*
45651677 CACGACCAAGGGCCTAGGAGCCG
190 CACGACCAAGGGCCTAGGAGCCA
* * *
45651700 ATGGTGTCCGAGGGTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
1 ATGGTGTCCGAGGGTCCCGCACGACCAAGGGCCTAGGTTACCGATGGCGTCCGAGGCTCCCGCAC
** *
45651765 ATCCAAGCACCAAGGTGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGAGCCGATG
66 ATCCAAGCACCAAGGTGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGAGCCGATG
* * * * * **
45651830 GTGTCCGAGGGTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGAC
131 CTGTCCGAGGCTCCCATACCACCAACGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGAC
* * *
45651895 CAGGGGCCTAGGTTGTCA
196 CAAGGGCCTAGG-AGCCA
* *
45651913 ATGGTG-CTCGAGGGTCCCGCACGACCAAGGGCCTAGGTTACCGATGGCG-CCGAGGCTCTCGGA
1 ATGGTGTC-CGAGGGTCCCGCACGACCAAGGGCCTAGGTTACCGATGGCGTCCGAGGCTCCCGCA
* * * * *
45651976 CATCCAAGCACCAAGGTGTCGATGGT-CCTCGAGGCTCCCGTAC-ATCCAAGCACCAAGGTGCCG
65 CATCCAAGCACCAAGGTGCCAAAGGTGCC-CGAGGCTCCCGCACGA-CCAAGCACCAAGGAGCCG
* * * *
45652039 ATGCTG-CTCGAGGCTCTCATACCATCGACGTCCTAGGTTGCCGATGG
128 ATGCTGTC-CGAGGCTCCCATACCACCAACGGCCTAGGTTGCCGATGG
45652086 CGTACAAGGC
Statistics
Matches: 484, Mismatches: 97, Indels: 35
0.79 0.16 0.06
Matches are distributed among these distances:
210 2 0.00
211 25 0.05
212 237 0.49
213 194 0.40
214 24 0.05
215 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (212 bp):
ATGGTGTCCGAGGGTCCCGCACGACCAAGGGCCTAGGTTACCGATGGCGTCCGAGGCTCCCGCAC
ATCCAAGCACCAAGGTGCCAAAGGTGCCCGAGGCTCCCGCACGACCAAGCACCAAGGAGCCGATG
CTGTCCGAGGCTCCCATACCACCAACGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCACGAC
CAAGGGCCTAGGAGCCA
Found at i:45663389 original size:42 final size:43
Alignment explanation
Indices: 45663333--45663426 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
45663323 TATGGTGTCA
* * *
45663333 GAGGCTCCCGCACATCC-AAGCACAAAGGTGCCAATGCTGCTC
1 GAGGCTCCCACACATCCGAAGCACAAAGGTACCAATGCTGCCC
* * * *
45663375 GAGGCTCCCACACATCCGAGGCACCAAGGTACCGATGGTGCCC
1 GAGGCTCCCACACATCCGAAGCACAAAGGTACCAATGCTGCCC
45663418 GAGGCTCCC
1 GAGGCTCCC
45663427 GCATGACCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 16 0.36
43 28 0.64
ACGTcount: A:0.23, C:0.37, G:0.27, T:0.13
Consensus pattern (43 bp):
GAGGCTCCCACACATCCGAAGCACAAAGGTACCAATGCTGCCC
Found at i:45663539 original size:42 final size:42
Alignment explanation
Indices: 45663312--45663760 Score: 451
Period size: 42 Copynumber: 10.6 Consensus size: 42
45663302 CATCCAACAT
* * * **
45663312 CCTAGGTTGCCTATGGTGTCAGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * * * * * *
45663355 CAAAGGTGCCAATGCTGCTCGAGGCTCCCACAC-ATCCGAGGCA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* * *
45663398 CCAAGGTACCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
45663440 ACTAGGTTGCCGATGGTGTTCGAGGCTCCCGTACGTCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
45663483 CCAAGGTGCTGATGGTGCCCGAGGCTCTCACACGATCAA-GG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
45663524 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
45663567 CCTAGGTTTCCGATGGTGCCC-AGGCTCTCGCAGGACCAAGGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
45663609 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
45663651 CCTAGGTTTCCGATGGTGCCC-AGGCTCTCGCAGGACCAAGGA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
45663693 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
45663735 CCTAGGTGCCGATGGT-CCCGAGGCTC
1 CCTAGGTGCCGATGGTGCCCGAGGCTC
45663761 TCACATGACC
Statistics
Matches: 335, Mismatches: 63, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
41 41 0.12
42 190 0.57
43 103 0.31
44 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.16
Consensus pattern (42 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:45663688 original size:126 final size:126
Alignment explanation
Indices: 45663312--45663772 Score: 511
Period size: 126 Copynumber: 3.6 Consensus size: 126
45663302 CATCCAACAT
* ** * ** * * *
45663312 CCTAGGTTGCCTATGGTGTCAGAGGCTCCCGCAC-ATCCAAGCACAAAGGTGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTG-CCCAGGCTCCCGCACGA-CCAAGGACCTAGGTGCCGATGGTGCCCG
* * *
45663376 AGGCTCCCACAC-ATCCGAGGCACCAAGG-TACCGATGGTGCCCGAGGCTCCCGCATGACCAAGG
64 AGGCTCCCACACGA-CCAAGG--CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
45663439 G
126 G
* * * * * * * *
45663440 ACTAGGTTGCCGATGGTGTTCGAGGCTCCCGTACGTCCAAGCACCAAGGTGCTGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTG-CCCAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGA
* *
45663505 GGCTCTCACACGATCAAGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
65 GGCTCCCACACGACCAAGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
45663567 CCTAGGTTTCCGATGGTGCCCAGGCTCTCGCAGGACCAAGGACCTAGGTGCCGATGGTGCCCGAG
1 CCTAGGTTGCCGATGGTGCCCAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAG
* * * * *
45663632 GCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGCCC-AGGCTCTCGCAGGACCAAGGA
66 GCTCCCACACGACCAA-GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
45663693 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGA
1 CCTAGGTTGCCGATGGTGCCC-AGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGA
* *
45663756 GGCTCTCACATGACCAA
65 GGCTCCCACACGACCAA
45663773 AGGATCAAAA
Statistics
Matches: 287, Mismatches: 41, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
125 32 0.11
126 114 0.40
127 73 0.25
128 67 0.23
129 1 0.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (126 bp):
CCTAGGTTGCCGATGGTGCCCAGGCTCCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAG
GCTCCCACACGACCAAGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:45663776 original size:84 final size:85
Alignment explanation
Indices: 45663401--45663772 Score: 497
Period size: 84 Copynumber: 4.4 Consensus size: 85
45663391 CGAGGCACCA
* * * **
45663401 AGGTACCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGA-CTAGGTTGCCGATGGTGTTCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCTCGCAGGACCAA-GGACCTAGGTTGCCGATGGTGCCCGAGG
* * ** *
45663465 CTCCCGTACGTCCAAGCACCA
65 CTCCCGCACGACCAAGGGCCT
* * * * *
45663486 AGGTGCTGATGGTGCCCGAGGCTCTCACACGATCAAGG-CCTAGGTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCTCGCAGGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGC
45663550 TCCCGCACGACCAAGGGCCT
66 TCCCGCACGACCAAGGGCCT
*
45663570 AGGTTTCCGATGGTGCCC-AGGCTCTCGCAGGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCTCGCAGGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGG
45663633 CTCCCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
*
45663654 AGGTTTCCGATGGTGCCC-AGGCTCTCGCAGGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCTCGCAGGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGG
45663717 CTCCCGCACGACCAAGGGCCT
65 CTCCCGCACGACCAAGGGCCT
* *
45663738 AGGTGCCGATGGT-CCCGAGGCTCTCACATGACCAA
1 AGGTGCCGATGGTGCCCGAGGCTCTCGCAGGACCAA
45663773 AGGATCAAAA
Statistics
Matches: 260, Mismatches: 23, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
82 3 0.01
83 25 0.10
84 184 0.71
85 48 0.18
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (85 bp):
AGGTGCCGATGGTGCCCGAGGCTCTCGCAGGACCAAGGACCTAGGTTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCT
Found at i:45664310 original size:116 final size:114
Alignment explanation
Indices: 45664102--45664331 Score: 282
Period size: 116 Copynumber: 2.0 Consensus size: 114
45664092 CTCCCGAACG
* *
45664102 ACCAAGGGCCTAGGTTACCGATGGCACCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGG
1 ACCAAGGGCCTAGGTTACCGATGGCACCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGC
* *
45664167 TTCCTGAGACTCTCACACATCCAAGCACCAAGGTGCTGATGCTGCTCGA
66 TGCCTGAGACTCTCACACATCCAAGCACCAAGGTGCCGATGCTGCTCGA
* * ** * * * *
45664216 ACCAATGGCCTAGTTTACCGATGGTGTCTGAGGCTCCCGCACATCCGAGGTACCAAGGTGTCGAT
1 ACCAAGGGCCTAGGTTACCGATGG-CACCGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGAT
* * * *
45664281 GCTG-CTCGAGGCTCTCGCATATCCGAGCACCAAGGTGCCGATGCTGCTCGA
64 GCTGCCT-GAGACTCTCACACATCCAAGCACCAAGGTGCCGATGCTGCTCGA
45664332 GGCTCTCACA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
114 22 0.23
115 19 0.20
116 56 0.58
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (114 bp):
ACCAAGGGCCTAGGTTACCGATGGCACCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGC
TGCCTGAGACTCTCACACATCCAAGCACCAAGGTGCCGATGCTGCTCGA
Found at i:45664324 original size:42 final size:43
Alignment explanation
Indices: 45664245--45664338 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 43
45664235 GATGGTGTCT
* * *
45664245 GAGGCTCCCGCACATCCGAGGTACCAAGGTGTCGATGCTGCTC
1 GAGGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTGCTC
*
45664288 GAGGCTCTCGCATATCCGA-GCACCAAGGTGCCGATGCTGCTC
1 GAGGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTGCTC
45664330 GAGGCTCTC
1 GAGGCTCTC
45664339 ACACCACCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 30 0.64
43 17 0.36
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (43 bp):
GAGGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTGCTC
Found at i:45664640 original size:24 final size:25
Alignment explanation
Indices: 45664584--45664649 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
45664574 ATATTTTGAG
*
45664584 ATGGCTCGCTGGAGCACCGACGGGA
1 ATGGCTCGCTGGAGCACCGACCGGA
*
45664609 A-AGCTCGCTGGAGCACCG-CCGGA
1 ATGGCTCGCTGGAGCACCGACCGGA
* *
45664632 ATGGATCGCCGGAGCACC
1 ATGGCTCGCTGGAGCACC
45664650 ACTGAAAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 5 0.14
24 29 0.83
25 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.36, T:0.11
Consensus pattern (25 bp):
ATGGCTCGCTGGAGCACCGACCGGA
Found at i:45671040 original size:33 final size:33
Alignment explanation
Indices: 45670998--45671067 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
45670988 GGGAGGATGA
45670998 TTCATGACAATATTCTGATTGCACATGAGCTCC
1 TTCATGACAATATTCTGATTGCACATGAGCTCC
45671031 TTCATGACAATATTCTGATTGCACATGAGCTCC
1 TTCATGACAATATTCTGATTGCACATGAGCTCC
45671064 TTCA
1 TTCA
45671068 CTATCTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (33 bp):
TTCATGACAATATTCTGATTGCACATGAGCTCC
Found at i:45673810 original size:43 final size:43
Alignment explanation
Indices: 45673741--45674751 Score: 498
Period size: 43 Copynumber: 23.7 Consensus size: 43
45673731 CGGCACCTTG
* * * *
45673741 GGCCCTTGGTTGTGTCG-GAGCATCGGGCACCATTGGCAACCAA
1 GGCCCTTGGTCGTG-CGAGAGCCTCGGGCACCATCGGCAACCTA
* * * *
45673784 GGCCCTTGGTCATGTGAGAGCCTCGGGCACCATCAGTAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* ** * * *
45673827 GG-CCTTGGTCATGCGAGAGCCTTAGGAACCATCAGCAACTTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * *
45673869 GGCCCTTGGTCGTGCGTGAGCCTCGGACACCATCGG-TACCTT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * * * * * *
45673911 GGTGCCTCAGAT-GTGTGTGAGGCTCGAGCA-GATCGG-TACCTT
1 GG-CCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** ** * * *
45673953 GGTGCTTGGAT-GTATGAGAGCCTCGGGCACCATTGACAAACTA
1 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * *
45673996 GGCCCTTGGTCGTGCGGGAGCCTCGGGAACCATTGGTAA-CTT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * ** **
45674038 GGTGCTTGGAT-GTGCGAGAGCCACAGATACCATTAGCAACCTAA
1 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCT-A
**
45674082 GG-CCTTGGTCGTGCGAGAGCCTTAGGCACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* *
45674124 GGCCCTTGGTCGTACGAGAGCCTCGGGAACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
*
45674167 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * * *
45674209 GGTGCCTCGAAT-GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTT
1 GG-CCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * * * * * *
45674252 GGTGCTTGGAT-ATACGGGAGCCTCGAGCAGCATCGG-TACCTTT
1 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACC-TA
** * * * *
45674295 GGTGCTTGGAT-GTAC-AGAAGCCTCGGACACCATTGGCAAACTA
1 GGCCCTTGG-TCGTGCGAG-AGCCTCGGGCACCATCGGCAACCTA
* * * *
45674338 GGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * * * *
45674380 GGTGCTTGGAT-GTGCGGGAGCCTCGGGCACTATCAGCAACCAA
1 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * *
45674423 GGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGC-ACCTTTT
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC--TA
* * * * * ** * *
45674467 TG-CCTCGGAT-GTGTGGGAGCCTCGAGCAGTATCAGC-ACCTT
1 GGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * *
45674508 GGTGCC-TGGAT-GTGCGGGAGCCTAGGACACCATCAGCAAACTA
1 GG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * *
45674551 GGCCCTTGGTCATGCGGGAGCCTCAGGCACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* *
45674594 GACCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* * * * * *
45674637 CGCCCTTGGTCAG-GCGAGATCCTTGGGCACCATTGG-TACCTT
1 GGCCCTTGGTC-GTGCGAGAGCCTCGGGCACCATCGGCAACCTA
** * *
45674679 GGTGCTTGGAT-GTGATG-GAGCCTCGGACACCATCGGCAACCTA
1 GGCCCTTGG-TCGTG-CGAGAGCCTCGGGCACCATCGGCAACCTA
* * *
45674722 GGCCTTTGGTTGTGCTG-GAGCCTCAGGCAC
1 GGCCCTTGGTCGTGC-GAGAGCCTCGGGCAC
45674752 TACCGACGTG
Statistics
Matches: 741, Mismatches: 187, Indels: 80
0.74 0.19 0.08
Matches are distributed among these distances:
40 1 0.00
41 21 0.03
42 221 0.30
43 487 0.66
44 11 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (43 bp):
GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
Found at i:45674317 original size:128 final size:128
Alignment explanation
Indices: 45674141--45674586 Score: 366
Period size: 128 Copynumber: 3.5 Consensus size: 128
45674131 GGTCGTACGA
* * * * * * * *
45674141 GAGCCTCGGGAACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGAGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGCACCATCGGCAC
* *
45674206 CTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATATACGG
66 CTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGG
** ** ** * * *
45674269 GAGCCTCGAGCAGC-ATC-GGTACCTTTGGTGCTTGGAT-GTAC-AGAAGCCTCGGACACCATTG
1 GAGCCTCGAGCA-CTATCAGCAACC-AAGGCCCTTAG-TCGTACAAG-AGCCTCGGGCACCATCG
* * * * * * * *
45674330 GCAAACTAGG-CCCT-TAGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGT
62 GC-ACCTTGGTGCCTCGAAT-GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGT
45674393 GCGG
125 GCGG
* *
45674397 GAGCCTCGGGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGAACCATCGGCAC
1 GAGCCTCGAGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGCACCATCGGCAC
** * * * * *
45674462 CTTTTTGCCTCGGATGTGTGGGAGCCTCGAGCAGTATCAGCACCTTGGTGCCTGGATGTGCGG
66 CTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * * * * * ** *
45674525 GAGCCTAG-GACACCATCAGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGGCACCATCGG
1 GAGCCTCGAG-CACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGCACCATCGG
45674587 TAACCTAGAC
Statistics
Matches: 248, Mismatches: 57, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
127 14 0.06
128 220 0.89
129 14 0.06
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (128 bp):
GAGCCTCGAGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGCCTCGGGCACCATCGGCAC
CTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGG
Found at i:45674446 original size:171 final size:168
Alignment explanation
Indices: 45673933--45674464 Score: 538
Period size: 171 Copynumber: 3.1 Consensus size: 168
45673923 GTGTGTGAGG
* * * *
45673933 CTCGAGCA-GATCGGTACCTTGGTGCTTGGATGTATGAGAGCCTCGGGCACCATTGACAAACTAG
1 CTCGAGCACCATCGGTACCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATTGGCAAACTAG
* * * * *
45673997 GCCCTTGGTCGTGCGGGAGCCTCGGGAACCATTGGTAACTTGGTGCTTGGATGTGCGAGAGCCAC
66 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTC
* ** * *
45674062 AGATACCATTAGCAACCTAAGGCCTTGGTCGTGCGAGAGC
131 GGGCA-CATCAGCAACC-AAGGCCTTGGTCGTACGAGAGC
* * * ** * *
45674102 CT-TAGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGAGAGCCTCGGGA-ACCATCGGCAAC
1 CTCGA-GCACCATCGG-TACCTTGGTGCTTGGAT-GTACGAGAGCCTC-GGACACCATTGGCAAA
* * * *
45674164 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGAATGTGCGGGA
62 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTG-CTTGGATGTGCGGGA
* * ** * * *
45674229 GCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT-ATACGGGAGC
126 GCCTCGGGCA-CATCAGCAACCAAGG-CCTTGG-TCGTACGAGAGC
*
45674273 CTCGAGCAGCATCGGTACCTTTGGTGCTTGGATGTAC-AGAAGCCTCGGACACCATTGGCAAACT
1 CTCGAGCACCATCGGTACC-TTGGTGCTTGGATGTACGAG-AGCCTCGGACACCATTGGCAAACT
*
45674337 AGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCC
64 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCC
* *
45674402 TCGGGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAGAGC
129 TCGGGCAC-ATCAGCAACCAAGG-CCTTGGTCGTACGAGAGC
* * *
45674444 CTCGGGAACCATCGGCACCTT
1 CTCGAGCACCATCGGTACCTT
45674465 TTTGCCTCGG
Statistics
Matches: 287, Mismatches: 60, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
168 1 0.00
169 6 0.02
170 46 0.16
171 207 0.72
172 27 0.09
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (168 bp):
CTCGAGCACCATCGGTACCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATTGGCAAACTAG
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTC
GGGCACATCAGCAACCAAGGCCTTGGTCGTACGAGAGC
Found at i:45674529 original size:85 final size:85
Alignment explanation
Indices: 45673942--45674631 Score: 368
Period size: 85 Copynumber: 8.1 Consensus size: 85
45673932 GCTCGAGCAG
* * ** * * * *
45673942 ATCGGTACCTTGGTGCTTGGATGTATGAGAGCCTCGGGCACCAT-TGACAAACTAGGCCCTTG-G
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCAG-CAACCTAGGCCC-TGAG
*
45674005 TCGTGCGGGAGCCTCGGGAACC
64 TCGTGCGGGAGCCTCGGGCACC
* * * * * * * * *
45674027 ATTGGTAACTTGGTGCTTGGATGTGCGAGAGCCAC-AGATACCATTAGCAACCTAAGGCCTTG-G
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCAGCAACCT-AGGCCCTGAG
* **
45674090 TCGTGCGAGAGCCTTAGGCACC
64 TCGTGCGGGAGCCTCGGGCACC
* ** * * * * * *
45674112 ATCGGCAACCTAGGCCCTTGG-TCGTACGAGAGCCTCGGGAACCATCGGCAACCTAGGCCCTTG-
1 ATCGGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCC-TGA
*
45674175 GTCGTGCGAGAGCCTCGGGCACC
63 GTCGTGCGGGAGCCTCGGGCACC
* * * * * *
45674198 ATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTG-G
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGG-CCCTGAG
* * * *
45674261 AT-ATACGGGAGCCTCGAGCAGC
64 -TCGTGCGGGAGCCTCGGGCACC
* * * * * ** * *
45674283 ATCGGTACCTTTGGTGCTTGGATGTACAGAAGCCTCG-GACACCATTGGCAAACTAGGCCCTTAG
1 ATCGGCACC-TTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCAGCAACCTAGGCCCTGAG
45674347 TCGTGCGGGAGCCTCGGGCACC
64 TCGTGCGGGAGCCTCGGGCACC
* * * * * *
45674369 ATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACTATCAGCAACCAAGGCCCTTAGTC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTGAGTC
* ** *
45674434 GTACAAGAGCCTCGGGAACC
66 GTGCGGGAGCCTCGGGCACC
** * ** * *
45674454 ATCGGCACCTTTTTGCCTCGGATGTGTGGGAGCCTCGAGCAGTATCAGC-ACCTTGGTGCCTG-G
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGG-CCCTGAG
* *
45674517 AT-GTGCGGGAGCCTAGGACACC
64 -TCGTGCGGGAGCCTCGGGCACC
* * * ** * * * * *
45674539 ATCAGCAAACTAGGCCCTTGG-TCATGCGGGAGCCTC-AGGCACCATCGGTAACCTAGACCCTTG
1 ATCGGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTCGA-GCACCATCAGCAACCTAGGCCC-TG
* *
45674602 -GTCGTGCGAGAGCCTCAGGCACC
62 AGTCGTGCGGGAGCCTCGGGCACC
45674625 ATCGGCA
1 ATCGGCA
45674632 ACCTACGCCC
Statistics
Matches: 464, Mismatches: 115, Indels: 52
0.74 0.18 0.08
Matches are distributed among these distances:
84 4 0.01
85 261 0.56
86 197 0.42
87 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (85 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCAGCAACCTAGGCCCTGAGTC
GTGCGGGAGCCTCGGGCACC
Found at i:45674615 original size:128 final size:126
Alignment explanation
Indices: 45674313--45674627 Score: 283
Period size: 128 Copynumber: 2.5 Consensus size: 126
45674303 GATGTACAGA
* * * * * * *
45674313 AGCCTCGGACACCATTGGCAAACTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGTACC
1 AGCCTCGG-CACCATCGG-AACCTAGACCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCACC
* * * * * *
45674378 TTGGTGCTTGGATGTGCGGGAGCCTCGGGCACTATCAGCAACCAAGGCCCTTAGTCGTACAAG
64 TTGGTGCCTGGATGTGCGGGAGCCTAGGACACCATCAGCAAACAAGGCCCTTAGTCATACAAG
* * **** * * **
45674441 AGCCTCGGGAACCATCGGCACCTTTTTGCCTCGGAT-GTGTGGGAGCCTCGAGCAGTATCAGCAC
1 AGCCTC-GGCACCATCGGAACC-TAGACCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCAGCAC
* * * **
45674505 CTTGGTGCCTGGATGTGCGGGAGCCTAGGACACCATCAGCAAACTAGGCCCTTGGTCATGCGGG
63 CTTGGTGCCTGGATGTGCGGGAGCCTAGGACACCATCAGCAAACAAGGCCCTTAGTCATACAAG
*
45674569 AGCCTCAGGCACCATCGGTAACCTAGACCCTTGGTCGTGCGAGAGCCTC-AGGCACCATC
1 AGCCTC-GGCACCATCGG-AACCTAGACCCTTGGTCGTGCGGGAGCCTCGA-GCACCATC
45674628 GGCAACCTAC
Statistics
Matches: 142, Mismatches: 39, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
127 4 0.03
128 132 0.93
129 6 0.04
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (126 bp):
AGCCTCGGCACCATCGGAACCTAGACCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCACCTT
GGTGCCTGGATGTGCGGGAGCCTAGGACACCATCAGCAAACAAGGCCCTTAGTCATACAAG
Found at i:45695366 original size:20 final size:20
Alignment explanation
Indices: 45695341--45695378 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45695331 ATCACATATA
45695341 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
45695361 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
45695379 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:45702864 original size:41 final size:42
Alignment explanation
Indices: 45702807--45702908 Score: 134
Period size: 41 Copynumber: 2.4 Consensus size: 42
45702797 CTCGATTTGA
* *
45702807 GATTTACGTGTAAGACCATGTCTGGGACATAGGCATCTAT-CT
1 GATTT-CGTGTAAGACCATGTCTGGGACAGAGGCATCGATACT
*
45702849 GATTTCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACT
1 GATTTCGTGTAAGACCATGTCTGGGACAGAGGCATCGATACT
* *
45702891 GAATTACATGTAAGACCA
1 G-ATTTCGTGTAAGACCA
45702909 CGTTCGGGAC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 31 0.60
42 8 0.15
43 13 0.25
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACAGAGGCATCGATACT
Found at i:45720406 original size:85 final size:85
Alignment explanation
Indices: 45720293--45720452 Score: 239
Period size: 85 Copynumber: 1.9 Consensus size: 85
45720283 TGACCGAGGG
* * * *
45720293 CCTAGGTTGCCAATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCAA
1 CCTAGGTTGCCAATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCAA
45720358 GGCACCCGCATATCCAACGT
66 GGCACCCGCATATCCAACGT
* * * *
45720378 CCTAGGTTTCCTATGGTGTCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCGA
1 CCTAGGTTGCCAATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCAA
*
45720443 GGCTCCCGCA
66 GGCACCCGCA
45720453 CATCTGAGGC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (85 bp):
CCTAGGTTGCCAATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCAA
GGCACCCGCATATCCAACGT
Found at i:45720465 original size:128 final size:127
Alignment explanation
Indices: 45720315--45720555 Score: 297
Period size: 128 Copynumber: 1.9 Consensus size: 127
45720305 ATGGTGCCCA
* * * *
45720315 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGAT-GCTGCTCAAGGCACCCGCA-TATCCAACGT
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATAG-TGCCCAAGGCACCAGCACGA-CCAACGG
* * *
45720378 CCTAGGTTTCCTATGGTGTCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCG
64 CCTAGGTTGCCGATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCG
* * ** * * *
45720442 AGGCTCCCGCACATCTGAGGCACCAAGGTGTTGATAGTGCCCGAGGCTCCAGCACGACCAAGGGC
1 AGGCTCCCGCACATC-CAAGCACCAAGGTGCCGATAGTGCCCAAGGCACCAGCACGACCAACGGC
* *
45720507 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGT
65 CTAGGTTGCCGATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGT
45720556 GTTGATGCTG
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
127 15 0.16
128 78 0.82
129 2 0.02
ACGTcount: A:0.24, C:0.35, G:0.25, T:0.17
Consensus pattern (127 bp):
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATAGTGCCCAAGGCACCAGCACGACCAACGGCC
TAGGTTGCCGATGGTGCCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCG
Found at i:45720487 original size:43 final size:42
Alignment explanation
Indices: 45720402--45720561 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
45720392 GGTGTCCAAA
**** * *
45720402 GCTCCCGCACATCCAA-GCACCAAGGTACCAATACTGCTCGAG
1 GCTCCCGCACAT-CAAGGCACCAAGGTGTTGATAGTGCCCGAG
*
45720444 GCTCCCGCACATCTGAGGCACCAAGGTGTTGATAGTGCCCGAG
1 GCTCCCGCACATC-AAGGCACCAAGGTGTTGATAGTGCCCGAG
* * * * ** *
45720487 GCTCCAGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCCCGAG
1 GCTCCCGCAC-ATCAAGGCACCAAGG-TGTTGATAGTGCCCGAG
45720530 GCTCCCGCACATCCAA-GCACCAAGGTGTTGAT
1 GCTCCCGCACAT-CAAGGCACCAAGGTGTTGAT
45720562 GCTGCTCGAG
Statistics
Matches: 91, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 63 0.69
44 2 0.02
ACGTcount: A:0.23, C:0.34, G:0.27, T:0.16
Consensus pattern (42 bp):
GCTCCCGCACATCAAGGCACCAAGGTGTTGATAGTGCCCGAG
Found at i:45720491 original size:85 final size:84
Alignment explanation
Indices: 45720308--45720561 Score: 226
Period size: 85 Copynumber: 3.0 Consensus size: 84
45720298 GTTGCCAATG
* * * *
45720308 GTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCAAGGCACCCGCATATCC
1 GTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCA
* * * *
45720373 AA-CGTCCTAGGT-TTCCTATG
66 AAGC-ACCAAGGTGTT--GATA
* * * * *
45720393 GTGTCCAAAGCTCCCGCACATCCAAGCACCAAGGTACCAATACTGCTCGAGGCTCCCGCACATCT
1 GTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATC-
* *
45720458 GAGGCACCAAGGTGTTGATA
65 AAAGCACCAAGGTGTTGATA
* * ** * * *
45720478 GTGCCCGAGGCTCCAGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACAT
1 GTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCACAT
*
45720542 CCAAGCACCAAGGTGTTGAT
64 CAAAGCACCAAGGTGTTGAT
45720562 GCTGCTCGAG
Statistics
Matches: 136, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
85 100 0.74
86 33 0.24
87 3 0.02
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.17
Consensus pattern (84 bp):
GTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCA
AAGCACCAAGGTGTTGATA
Found at i:45720595 original size:85 final size:85
Alignment explanation
Indices: 45720440--45720633 Score: 223
Period size: 85 Copynumber: 2.3 Consensus size: 85
45720430 CAATACTGCT
* * * * *
45720440 CGAGGCTCCCGCACATCTGAGGCACCAAGGTGTTGATAGTGCCCGAGGCTCCAGCACGACCAAGG
1 CGAGGCTCCCGCACATC-AAAGCACCAAGGTGTTGATAGTGCCCGAGACACCAGCACGACCAACG
45720505 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTGCC
* * *
45720526 CGAGGCTCCCGCACATCCAAGCACCAAGGTGTTGAT-GCTGCTCGAGACACTC-GTAC-ATCCAA
1 CGAGGCTCCCGCACATCAAAGCACCAAGGTGTTGATAG-TGCCCGAGACAC-CAGCACGA-CCAA
* * *
45720588 CGTCCTAGGTTGCCTATGGTGTC
63 CGGCCTAGGTTGCCGATGGTGCC
*
45720611 TGAGGCTCCCGCACATCAAAGCA
1 CGAGGCTCCCGCACATCAAAGCA
45720634 TGTAACATCC
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
84 2 0.02
85 73 0.78
86 18 0.19
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (85 bp):
CGAGGCTCCCGCACATCAAAGCACCAAGGTGTTGATAGTGCCCGAGACACCAGCACGACCAACGG
CCTAGGTTGCCGATGGTGCC
Found at i:45721491 original size:30 final size:31
Alignment explanation
Indices: 45721450--45721507 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
45721440 TTTTCGAGCC
*
45721450 TAGGGGAAAAATCATAA-TTTTGCAAAGGTT
1 TAGGGGAAAAATCATAACTTTTCCAAAGGTT
* *
45721480 TAGGGGCAAAATTATAACTTTTCCAAAG
1 TAGGGGAAAAATCATAACTTTTCCAAAG
45721508 TTTGAGCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (31 bp):
TAGGGGAAAAATCATAACTTTTCCAAAGGTT
Found at i:45724066 original size:43 final size:43
Alignment explanation
Indices: 45724018--45724302 Score: 177
Period size: 43 Copynumber: 6.9 Consensus size: 43
45724008 CCAAGATACT
* * *
45724018 GATGGTGCCCGATGCTCCAGCACGACCAAGGGCCTAGGTTGTC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * ** * *
45724061 GATGGTGTCCAAGGCTCCC-CTAC-ATCCAAGCACCGAAG-TGCC
1 GATGGTGCCCGAGGCTCCCGC-ACGA-CCAAGGGCCTAGGTTGCC
*
45724103 AATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA---TG--
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
** * * **
45724141 G-T-GT--TTGAGGCACCCGCAC-ATCCAATGTTCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCC
* *
45724180 TATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
*** * * **
45724223 GATGGTGTTTGAGGCACCCGCAC-ATGCAA-CACCTTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCC-TAGGTTGCC
* *
45724266 TATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAG
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
45724303 CGTCACGGGC
Statistics
Matches: 175, Mismatches: 48, Indels: 38
0.67 0.18 0.15
Matches are distributed among these distances:
33 1 0.01
34 20 0.11
36 2 0.01
37 3 0.02
40 3 0.02
41 2 0.01
42 34 0.19
43 106 0.61
44 4 0.02
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
Found at i:45724132 original size:42 final size:43
Alignment explanation
Indices: 45724019--45724132 Score: 99
Period size: 42 Copynumber: 2.7 Consensus size: 43
45724009 CAAGATACTG
* * ** * * * *
45724019 ATGGTGCCCGATGCTCCAGCACGACCAAGGGCCTAGGTTGTCG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGCACCGAAGTTGCCA
* *
45724062 ATGGTGTCCAAGGCTCCC-CTAC-ATCCAAGCACCGAAG-TGCCA
1 ATGGTGCCCGAGGCTCCCGC-ACGA-CCAAGCACCGAAGTTGCCA
45724104 ATGGTGCCCGAGGCTCCCGCACGACCAAG
1 ATGGTGCCCGAGGCTCCCGCACGACCAAG
45724133 GGCCTATGGT
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
42 28 0.51
43 27 0.49
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (43 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGCACCGAAGTTGCCA
Found at i:45724195 original size:77 final size:77
Alignment explanation
Indices: 45724099--45724301 Score: 255
Period size: 86 Copynumber: 2.5 Consensus size: 77
45724089 AGCACCGAAG
*
45724099 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTATGGTGTTTGAGGCACCCGCACATCC
1 TGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTATGGTGTTTGAGGCACCCGCACATCC
***
45724164 AA-TGTTCTAGGT
66 AACACCT-TAGGT
45724176 TGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGTGTTTGAGGCACC
1 TGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC-------T--ATGGTGTTTGAGGCACC
*
45724241 CGCACATGCAACACCTTAGGT
57 CGCACATCCAACACCTTAGGT
*
45724262 TGCCTATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTA
1 TGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
45724302 GCGTCACGGG
Statistics
Matches: 110, Mismatches: 6, Indels: 20
0.81 0.04 0.15
Matches are distributed among these distances:
77 38 0.35
79 1 0.01
84 1 0.01
86 69 0.63
87 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.20
Consensus pattern (77 bp):
TGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTATGGTGTTTGAGGCACCCGCACATCC
AACACCTTAGGT
Found at i:45724261 original size:86 final size:86
Alignment explanation
Indices: 45724138--45724302 Score: 269
Period size: 86 Copynumber: 1.9 Consensus size: 86
45724128 CCAAGGGCCT
*** *
45724138 ATGGTGTTTGAGGCACCCGCACATCCAATGTTCTAGGTTGCCTATGGTGCCCGAGGCTCCCGCAC
1 ATGGTGTTTGAGGCACCCGCACATCCAAACCTCTAGGTTGCCTATGGTGCCCGAGGCTCCAGCAC
45724203 GACCAAGGGCCTAGGTTGTCG
66 GACCAAGGGCCTAGGTTGTCG
*
45724224 ATGGTGTTTGAGGCACCCGCACATGCAACACCT-TAGGTTGCCTATGGTGCCCGAGGCTCCAGCA
1 ATGGTGTTTGAGGCACCCGCACATCCAA-ACCTCTAGGTTGCCTATGGTGCCCGAGGCTCCAGCA
45724288 CGACCAAGGGCCTAG
65 CGACCAAGGGCCTAG
45724303 CGTCACGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
86 72 0.99
87 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (86 bp):
ATGGTGTTTGAGGCACCCGCACATCCAAACCTCTAGGTTGCCTATGGTGCCCGAGGCTCCAGCAC
GACCAAGGGCCTAGGTTGTCG
Found at i:45727859 original size:42 final size:42
Alignment explanation
Indices: 45727715--45728281 Score: 269
Period size: 42 Copynumber: 13.4 Consensus size: 42
45727705 ACTAGGTTGT
* * *
45727715 CGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGC
1 CGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTGC
* ** * * * *
45727757 CAATGCTGCTTAAGGCACC--CATATTTCCAA-CATCCTAGCTTGC
1 CGATGCTGCTCGAGGCTCCTGCACA--TCCAAGCA-CCAAG-GTGC
* * *
45727800 CAATGGTG-TCCGAGGCTCCTGCACATCCAAGCACCAAGATGC
1 CGATGCTGCT-CGAGGCTCCTGCACATCCAAGCACCAAGGTGC
* * *
45727842 CGATGCTGCTCAAGGCTCCTGCACATCTAAGGCACCAAGGTTC
1 CGATGCTGCTCGAGGCTCCTGCACATCCAA-GCACCAAGGTGC
* * * * * * ** * **
45727885 CGATGGTGCCCAAAGCTCCAGCACGA-CCAAAG-GCCTTGTTTAT
1 CGATGCTGCTCGAGGCTCCTGCAC-ATCC-AAGCACCAAG-GTGC
* * * ** * **
45727928 CGATGGTGCCCGTGGCTCCCACACATCCAAGCACCAATGTAT
1 CGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTGC
* * * * * *
45727970 CGATACAGCTCGAGGCACCTACACATCCAATG-TCCTAGGTTGC
1 CGATGCTGCTCGAGGCTCCTGCACATCCAA-GCACCAAGG-TGC
* * * * *
45728013 CAATAG-TG-TCTGAGGCTCCCGTACATCCAAGCACTAAGGTAC
1 CGAT-GCTGCTC-GAGGCTCCTGCACATCCAAGCACCAAGGTGC
* * *
45728055 CGATGCTGCTCGAGGCTCCCGTACATCCAAGCACTAAGGTGC
1 CGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTGC
* *
45728097 CGATGCTGCTCGAGGCTGCTGTACATCCAAGCACCAAGGTGC
1 CGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTGC
* *
45728139 CGATGCTGTTCGAGGCT-CTAGCACATCCGAGGCACCAAGGTGC
1 CGATGCTGCTCGAGGCTCCT-GCACATCC-AAGCACCAAGGTGC
* * * *** * *
45728182 TGATGGTACTCGAGGCT-CTAGCACGA-CCAAGGGTCTAGGTTAC
1 CGATGCTGCTCGAGGCTCCT-GCAC-ATCCAAGCACCAAGG-TGC
* * * **
45728225 CGATGGTG-TCCAAGGCTCCCGCACATCCAAGCACCAAGGTAT
1 CGATGCTGCT-CGAGGCTCCTGCACATCCAAGCACCAAGGTGC
*
45728267 CGATGGTGCTCGAGG
1 CGATGCTGCTCGAGG
45728282 TTCTCACACC
Statistics
Matches: 401, Mismatches: 94, Indels: 60
0.72 0.17 0.11
Matches are distributed among these distances:
40 3 0.01
41 5 0.01
42 211 0.53
43 172 0.43
44 7 0.02
45 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.20
Consensus pattern (42 bp):
CGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTGC
Found at i:45727903 original size:43 final size:42
Alignment explanation
Indices: 45727814--45727908 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 42
45727804 GGTGTCCGAG
* *
45727814 GCTCCTGCACATCCAAGCACCAAGATGCCGATGCTGCTCAAG
1 GCTCCTGCACATCCAAGCACCAAGATGCCGATGCTGCCCAAA
* * * *
45727856 GCTCCTGCACATCTAAGGCACCAAGGTTCCGATGGTGCCCAAA
1 GCTCCTGCACATCCAA-GCACCAAGATGCCGATGCTGCCCAAA
*
45727899 GCTCCAGCAC
1 GCTCCTGCAC
45727909 GACCAAAGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 15 0.33
43 30 0.67
ACGTcount: A:0.25, C:0.36, G:0.22, T:0.17
Consensus pattern (42 bp):
GCTCCTGCACATCCAAGCACCAAGATGCCGATGCTGCCCAAA
Found at i:45728259 original size:85 final size:84
Alignment explanation
Indices: 45728035--45728281 Score: 232
Period size: 85 Copynumber: 2.9 Consensus size: 84
45728025 AGGCTCCCGT
* * * * *
45728035 ACATCCAAGCACTAAGGTACCGATGCTG-CTCGAGGCTCCCGTACATCCAAGCACTAAGGTGCCG
1 ACATCCAAGCACCAAGGTACCGATGCTGTC-CAAGGCTCCCGCACATCCAAGCACCAAGGTGCTG
* *
45728099 ATGCTGCTCGAGGCTGCTGT
65 ATGGTGCTCGAGGCTGCTGC
* * * ** *
45728119 ACATCCAAGCACCAAGGTGCCGATGCTGTTCGAGGCTCTAGCACATCCGAGGCACCAAGGTGCTG
1 ACATCCAAGCACCAAGGTACCGATGCTGTCCAAGGCTCCCGCACATCC-AAGCACCAAGGTGCTG
*
45728184 ATGGTACTCGAGGCT-CTAGC
65 ATGGTGCTCGAGGCTGCT-GC
*** * * *
45728204 ACGA-CCAAGGGTCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGT-AT
1 AC-ATCCAAGCACCAAGG-TACCGATGCTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCT
45728267 CGATGGTGCTCGAGG
64 -GATGGTGCTCGAGG
45728282 TTCTCACACC
Statistics
Matches: 132, Mismatches: 25, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
84 44 0.33
85 62 0.47
86 26 0.20
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (84 bp):
ACATCCAAGCACCAAGGTACCGATGCTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCTGA
TGGTGCTCGAGGCTGCTGC
Found at i:45728689 original size:21 final size:23
Alignment explanation
Indices: 45728663--45728704 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
45728653 TAAAGGATAC
45728663 CTAC-AAATCAAATC-TCTAATT
1 CTACAAAATCAAATCTTCTAATT
*
45728684 CTACAAAATCATATCTTCTAA
1 CTACAAAATCAAATCTTCTAA
45728705 GATTACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (23 bp):
CTACAAAATCAAATCTTCTAATT
Found at i:45728713 original size:17 final size:17
Alignment explanation
Indices: 45728693--45728745 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
45728683 TCTACAAAAT
*
45728693 CATATCTTCTAAGATTA
1 CATATCTTCCAAGATTA
*
45728710 CATATCATATCCAAGATTG
1 CATATC-T-TCCAAGATTA
* *
45728729 CATATCCTCGAAGATTA
1 CATATCTTCCAAGATTA
45728746 TGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 14 0.48
18 1 0.03
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Found at i:45731691 original size:27 final size:26
Alignment explanation
Indices: 45731660--45731837 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
45731650 TAAATTGTAC
45731660 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
45731687 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
45731713 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
45731741 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
45731769 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
45731796 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
45731823 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45731838 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:45731776 original size:82 final size:81
Alignment explanation
Indices: 45731661--45731816 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
45731651 AAATTGTACA
* *
45731661 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45731725 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
45731742 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45731807 TGCGAGTTGA
65 TGCGAATTGA
45731817 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45731828 original size:82 final size:81
Alignment explanation
Indices: 45731657--45731837 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
45731647 GATTAAATTG
* *
45731657 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45731722 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
45731738 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45731802 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45731820 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45731838 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45731848 original size:27 final size:27
Alignment explanation
Indices: 45731742--45731848 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
45731732 TGACCATGCG
* * * *
45731742 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
45731770 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
45731797 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
45731824 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
45731849 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:45739882 original size:27 final size:27
Alignment explanation
Indices: 45739851--45740028 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
45739841 TAAATTGTAC
45739851 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
45739878 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45739904 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
45739932 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
45739960 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
45739987 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
45740014 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45740029 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:45739965 original size:82 final size:81
Alignment explanation
Indices: 45739852--45740007 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
45739842 AAATTGTACA
* *
45739852 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
45739916 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
45739933 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
45739998 TGCGAGTTGA
65 TGCGAATTGA
45740008 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:45740019 original size:82 final size:81
Alignment explanation
Indices: 45739848--45740028 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
45739838 GATTAAATTG
* *
45739848 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45739913 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
45739929 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45739993 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
45740011 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45740029 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:45743033 original size:8 final size:8
Alignment explanation
Indices: 45743020--45743083 Score: 51
Period size: 8 Copynumber: 7.8 Consensus size: 8
45743010 AAATTAAGAT
45743020 AAATAAAA
1 AAATAAAA
45743028 AAATAAAA
1 AAATAAAA
45743036 AAA-AACAA
1 AAATAA-AA
45743044 ACCAGAT-AAA
1 A--A-ATAAAA
**
45743054 AAATAAGT
1 AAATAAAA
45743062 AAATAAAA
1 AAATAAAA
*
45743070 AAATAAGA
1 AAATAAAA
45743078 AAATAA
1 AAATAA
45743084 TGAAAAAAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 4 0.09
8 35 0.78
10 4 0.09
11 2 0.04
ACGTcount: A:0.78, C:0.05, G:0.05, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:45743070 original size:16 final size:16
Alignment explanation
Indices: 45743020--45743083 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
45743010 AAATTAAGAT
*
45743020 AAATAAAAAAATAAAA
1 AAATAAGAAAATAAAA
* *
45743036 AAA-AACAAACCAGATAAA
1 AAATAAGAAA--ATA-AAA
*
45743054 AAATAAGTAAATAAAA
1 AAATAAGAAAATAAAA
45743070 AAATAAGAAAATAA
1 AAATAAGAAAATAA
45743084 TGAAAAAAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
15 5 0.13
16 19 0.50
17 4 0.11
18 6 0.16
19 4 0.11
ACGTcount: A:0.78, C:0.05, G:0.05, T:0.12
Consensus pattern (16 bp):
AAATAAGAAAATAAAA
Found at i:45743106 original size:8 final size:8
Alignment explanation
Indices: 45743049--45743110 Score: 56
Period size: 8 Copynumber: 7.5 Consensus size: 8
45743039 AACAAACCAG
45743049 ATAA-AAA
1 ATAAGAAA
*
45743056 ATAAGTAA
1 ATAAGAAA
*
45743064 ATAAAAAA
1 ATAAGAAA
45743072 ATAAGAAA
1 ATAAGAAA
45743080 ATAATGAAA
1 ATAA-GAAA
45743089 A-AAGTTGAAA
1 ATAA---GAAA
45743099 ATAAGAAA
1 ATAAGAAA
45743107 ATAA
1 ATAA
45743111 ATAAAATAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
7 4 0.09
8 29 0.63
9 5 0.11
10 6 0.13
11 2 0.04
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.18
Consensus pattern (8 bp):
ATAAGAAA
Found at i:45743114 original size:12 final size:12
Alignment explanation
Indices: 45743097--45743197 Score: 54
Period size: 12 Copynumber: 8.7 Consensus size: 12
45743087 AAAAAGTTGA
45743097 AAATAAGAA-AAT
1 AAATAA-AATAAT
45743109 AAATAAAATAAT
1 AAATAAAATAAT
* *
45743121 AAA-GAAATATT
1 AAATAAAATAAT
45743132 AAATAAAATAAT
1 AAATAAAATAAT
* *
45743144 -TA-AAAATGAT
1 AAATAAAATAAT
*
45743154 -AATAATAATAGT
1 AAATAA-AATAAT
*
45743166 -AATAGTAATAAT
1 AAATA-AAATAAT
*
45743178 AAAT-AAGTAGAT
1 AAATAAAATA-AT
45743190 AAATAAAA
1 AAATAAAA
45743198 CACATATACA
Statistics
Matches: 67, Mismatches: 14, Indels: 15
0.70 0.15 0.16
Matches are distributed among these distances:
10 8 0.12
11 17 0.25
12 37 0.55
13 5 0.07
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (12 bp):
AAATAAAATAAT
Found at i:45743121 original size:8 final size:8
Alignment explanation
Indices: 45743049--45743163 Score: 51
Period size: 8 Copynumber: 13.8 Consensus size: 8
45743039 AACAAACCAG
45743049 ATAA-AAA
1 ATAATAAA
45743056 ATAAGT-AA
1 ATAA-TAAA
*
45743064 ATAAAAAA
1 ATAATAAA
*
45743072 ATAAGAAA
1 ATAATAAA
45743080 ATAATGAAA
1 ATAAT-AAA
45743089 A-AAGTTGAAA
1 ATAA--T-AAA
*
45743099 ATAAGAAA
1 ATAATAAA
45743107 ATAAATAAA
1 AT-AATAAA
45743116 ATAATAAA
1 ATAATAAA
**
45743124 GA-AATATT
1 -ATAATAAA
45743132 A-AATAAA
1 ATAATAAA
45743139 ATAATTAAAA
1 ATAA-T-AAA
*
45743149 ATGATAATA
1 ATAATAA-A
45743158 ATAATA
1 ATAATA
45743164 GTAATAGTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 24
0.71 0.09 0.20
Matches are distributed among these distances:
7 10 0.12
8 40 0.48
9 20 0.24
10 12 0.14
11 2 0.02
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (8 bp):
ATAATAAA
Found at i:45743138 original size:23 final size:21
Alignment explanation
Indices: 45743101--45743143 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 21
45743091 AGTTGAAAAT
45743101 AAGAAAATAAATAAAATAATA
1 AAGAAAATAAATAAAATAATA
45743122 AAGAAATATTAAATAAAATAAT
1 AAGAAA-A-TAAATAAAATAAT
45743144 TAAAAATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.30
22 1 0.05
23 13 0.65
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AAGAAAATAAATAAAATAATA
Found at i:45744117 original size:16 final size:16
Alignment explanation
Indices: 45744096--45744131 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
45744086 CTTATTAAAA
45744096 TGATCAAATTGCGAGG
1 TGATCAAATTGCGAGG
45744112 TGATCAAATTGCGAGG
1 TGATCAAATTGCGAGG
45744128 TGAT
1 TGAT
45744132 TCGATCACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (16 bp):
TGATCAAATTGCGAGG
Found at i:45751100 original size:13 final size:13
Alignment explanation
Indices: 45751082--45751109 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
45751072 ACCCTTTTCG
45751082 CTAATTACGAATC
1 CTAATTACGAATC
45751095 CTAATTACGAATC
1 CTAATTACGAATC
45751108 CT
1 CT
45751110 TTTCGGGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (13 bp):
CTAATTACGAATC
Found at i:45751459 original size:14 final size:14
Alignment explanation
Indices: 45751440--45751469 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45751430 TATCCATGTC
45751440 TTCAGGATGTATCT
1 TTCAGGATGTATCT
*
45751454 TTCAGGGTGTATCT
1 TTCAGGATGTATCT
45751468 TT
1 TT
45751470 ATCTGGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.13, G:0.23, T:0.47
Consensus pattern (14 bp):
TTCAGGATGTATCT
Found at i:45752666 original size:15 final size:15
Alignment explanation
Indices: 45752648--45752681 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
45752638 TCTCCTCTTA
45752648 CTTCTTCTCCAACTC
1 CTTCTTCTCCAACTC
*
45752663 CTTCTTCTCTAACTC
1 CTTCTTCTCCAACTC
45752678 CTTC
1 CTTC
45752682 ATTTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (15 bp):
CTTCTTCTCCAACTC
Found at i:45755610 original size:22 final size:23
Alignment explanation
Indices: 45755583--45755627 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
45755573 GGATATCTAC
45755583 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
45755605 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
45755628 TATCATATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:45755631 original size:17 final size:17
Alignment explanation
Indices: 45755609--45755661 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
45755599 ATTACAAAAT
*
45755609 CATATCTTCTAAGATTA
1 CATATCTTCCAAGATTA
*
45755626 CATATCATATCCAAGATTG
1 CATATC-T-TCCAAGATTA
* *
45755645 CATATCCTCGAAGATTA
1 CATATCTTCCAAGATTA
45755662 TGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 14 0.48
18 1 0.03
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Done.