Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 139 of 290
Found at i:47210258 original size:21 final size:21
Alignment explanation
Indices: 47210232--47210272 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
47210222 AGACGAGCAA
* *
47210232 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
47210253 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
47210273 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:47215957 original size:9 final size:9
Alignment explanation
Indices: 47215943--47215974 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
47215933 TATCAAGACA
47215943 ATAATAATG
1 ATAATAATG
47215952 ATAATAATG
1 ATAATAATG
*
47215961 ATAATAATA
1 ATAATAATG
47215970 ATAAT
1 ATAAT
47215975 TTAATAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (9 bp):
ATAATAATG
Found at i:47224267 original size:15 final size:15
Alignment explanation
Indices: 47224244--47224286 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
47224234 TGATTTTGTC
47224244 TAAAA-TATTTTTTT
1 TAAAATTATTTTTTT
*
47224258 TAAAATTA-TTTTCT
1 TAAAATTATTTTTTT
47224272 TAAAAGTTATTTTTT
1 TAAAA-TTATTTTTT
47224287 AGTGAAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 15 0.62
15 5 0.21
16 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TAAAATTATTTTTTT
Found at i:47224410 original size:28 final size:28
Alignment explanation
Indices: 47224372--47224427 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
47224362 AATATATTTA
* *
47224372 AATAATTAATATCTTA-TATAAACTTAAT
1 AATAAATAATATCTAATTA-AAACTTAAT
47224400 AATAAATAATATCTAATTAAAACTTAAT
1 AATAAATAATATCTAATTAAAACTTAAT
47224428 TTAAATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAAATAATATCTAATTAAAACTTAAT
Found at i:47224597 original size:34 final size:38
Alignment explanation
Indices: 47224558--47224629 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 38
47224548 ATACTATAAA
47224558 ATATTTATTATT-AAATATT-TATAAAT-TTT-AATAT
1 ATATTTATTATTAAAATATTATATAAATATTTCAATAT
47224592 ATATTTATTATTAAAATATTAATATAAATATTTCAATA
1 ATATTTATTATTAAAATATT-ATATAAATATTTCAATA
47224630 AGAATATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
34 12 0.36
35 7 0.21
37 7 0.21
38 3 0.09
39 4 0.12
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (38 bp):
ATATTTATTATTAAAATATTATATAAATATTTCAATAT
Found at i:47224705 original size:21 final size:20
Alignment explanation
Indices: 47224666--47224705 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
47224656 ATAAACTTAC
* *
47224666 AATATTAAATACTTTAATAA
1 AATAATAAATACATTAATAA
47224686 AATAATAAATTACATTAATA
1 AATAATAAA-TACATTAATA
47224706 TTTAATATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATAAATACATTAATAA
Found at i:47224950 original size:19 final size:19
Alignment explanation
Indices: 47224924--47224972 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
47224914 TTGTTGAATA
* *
47224924 CAAATTATTTTCTATTTAT
1 CAAATTATTTTCAATTGAT
*
47224943 CAAGTTATTTTCAATTGAT
1 CAAATTATTTTCAATTGAT
47224962 CAAATTATTTT
1 CAAATTATTTT
47224973 TTATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (19 bp):
CAAATTATTTTCAATTGAT
Found at i:47226134 original size:13 final size:14
Alignment explanation
Indices: 47226103--47226144 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
47226093 ATGTGAAGAA
47226103 TATTATTTAAAATTAT
1 TATT-TTTAAAA-TAT
47226119 TATTTTTAAAAT-T
1 TATTTTTAAAATAT
*
47226132 TATTGTTAAAATA
1 TATTTTTAAAATA
47226145 AAATTGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
14 1 0.04
15 7 0.29
16 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTTTTAAAATAT
Found at i:47226188 original size:22 final size:21
Alignment explanation
Indices: 47226155--47226197 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
47226145 AAATTGAAAT
*
47226155 ATTAATTTATTAAAATAATAA
1 ATTAATTAATTAAAATAATAA
* *
47226176 ATTATATTAATTATATTAATAA
1 ATTA-ATTAATTAAAATAATAA
47226198 TTTGTTATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTAATTAATTAAAATAATAA
Found at i:47227250 original size:14 final size:13
Alignment explanation
Indices: 47227221--47227254 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
47227211 TTACGATAGG
*
47227221 AATTTTATATGAA
1 AATTTTATAAGAA
47227234 AATTTTGATAAGAA
1 AATTTT-ATAAGAA
47227248 AATTTTA
1 AATTTTA
47227255 CCGATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
AATTTTATAAGAA
Found at i:47228689 original size:75 final size:75
Alignment explanation
Indices: 47228560--47228710 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
47228550 TCGCTTGAAC
47228560 TCTCTATTACCTCATCCAAAGCTCCCTGATATTATCTCTTTGGAGATACTTGAAAGGCTCTATGA
1 TCTCTATTACCTCATCCAAAGCTCCCTGATATTATCTCTTTGGAGATACTTGAAAGGCTCTATGA
47228625 GCTTCCAGAG
66 GCTTCCAGAG
* *
47228635 TCTCTGTTACCTTATCCAAAGCTCCCTGATATTATCTCTTTGGAGATA-TCTGAAAGGCTCTATG
1 TCTCTATTACCTCATCCAAAGCTCCCTGATATTATCTCTTTGGAGATACT-TGAAAGGCTCTATG
47228699 AGCTTCCAGAG
65 AGCTTCCAGAG
47228710 T
1 T
47228711 AAAAACTCTT
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
74 1 0.01
75 72 0.99
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (75 bp):
TCTCTATTACCTCATCCAAAGCTCCCTGATATTATCTCTTTGGAGATACTTGAAAGGCTCTATGA
GCTTCCAGAG
Found at i:47238601 original size:32 final size:33
Alignment explanation
Indices: 47238555--47238618 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
47238545 AACAGCGGGT
47238555 ACTGGGCCGAAG-CCCTTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTCAGATA-ACAGTAA
**
47238587 ACTGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTCAGATAACAGTA
47238619 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTCAGATAACAGTAA
Found at i:47238991 original size:27 final size:26
Alignment explanation
Indices: 47238935--47238991 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
47238925 CAACCTTAAC
* * *
47238935 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
47238961 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
47238988 CCTA
1 CCTA
47238992 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:47246334 original size:27 final size:26
Alignment explanation
Indices: 47246278--47246334 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
47246268 CAACCTTAAC
* * *
47246278 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
47246304 CCTAGGGGTAAATCTA-TAAATTTTCCA
1 CCTAGGGGTAAATC-AGT-AATTTTCCA
47246331 CCTA
1 CCTA
47246335 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:47249269 original size:20 final size:20
Alignment explanation
Indices: 47249246--47249300 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
47249236 ATACCAACTA
*
47249246 AAAAATATCGATACTTTTGT
1 AAAAATATCGATACTTGTGT
*
47249266 AAAAATATCGACACTTGTGT
1 AAAAATATCGATACTTGTGT
*
47249286 AAATATATCGATACT
1 AAAAATATCGATACT
47249301 ACGTGGCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (20 bp):
AAAAATATCGATACTTGTGT
Found at i:47250942 original size:16 final size:16
Alignment explanation
Indices: 47250921--47250951 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47250911 ATTATTGCTT
47250921 TATTTTTATCCTTATC
1 TATTTTTATCCTTATC
*
47250937 TATTTTTATGCTTAT
1 TATTTTTATCCTTAT
47250952 TTCACTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.03, T:0.65
Consensus pattern (16 bp):
TATTTTTATCCTTATC
Found at i:47258604 original size:22 final size:24
Alignment explanation
Indices: 47258554--47258601 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
47258544 AGAAACAAGT
47258554 TGAAAGAGAGGCTTAGGTCTCTGG
1 TGAAAGAGAGGCTTAGGTCTCTGG
47258578 TGAAAGAGAGGCTTAGGTCTCTGG
1 TGAAAGAGAGGCTTAGGTCTCTGG
47258602 AAAAAGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25
Consensus pattern (24 bp):
TGAAAGAGAGGCTTAGGTCTCTGG
Found at i:47258607 original size:24 final size:24
Alignment explanation
Indices: 47258556--47258608 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
47258546 AAACAAGTTG
**
47258556 AAAGAGAGGCTTAGGTCTCTGGTG
1 AAAGAGAGGCTTAGGTCTCTGGAA
47258580 AAAGAGAGGCTTAGGTCTCTGGAA
1 AAAGAGAGGCTTAGGTCTCTGGAA
47258604 AAAGA
1 AAAGA
47258609 ACTATGAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.34, T:0.21
Consensus pattern (24 bp):
AAAGAGAGGCTTAGGTCTCTGGAA
Found at i:47269370 original size:13 final size:13
Alignment explanation
Indices: 47269352--47269377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47269342 CAGGGACACG
47269352 CCCGTGTCTGAAA
1 CCCGTGTCTGAAA
47269365 CCCGTGTCTGAAA
1 CCCGTGTCTGAAA
47269378 TCATGAGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
CCCGTGTCTGAAA
Found at i:47270502 original size:47 final size:47
Alignment explanation
Indices: 47270303--47270665 Score: 207
Period size: 47 Copynumber: 7.7 Consensus size: 47
47270293 GGGATATATT
* * * *
47270303 GCCGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATATAC-GCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCT-CTGTA
* * * *
47270352 TGCTGATGCATATCCCAGACATGTCTTACACTAGCA--CAACTCT-TA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA
* *
47270397 GCCGATGCGTGTCCCAGACACGTCTTACACTGG--CT-ATCTCTGTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT--A
* *
47270443 GGCCAATGCATGTCCCAGACATGTCTTATACTGGCACTCATCTCTGTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA
* * ***
47270491 -CCGATGCCATGTCACAGACATGGTCTTACACTTG--CT-ATCAAAGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTGTA
* * * *
47270536 CGGCTGATACATGTCCCAGACATGTCTTACACTAGC-C-C-TCGTCTGGA
1 --GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATC-TCTGTA
* ** * * * ** *
47270583 TGCCGGTGCCATGTCCTGGACATGGTCTTACACTAGCTCTCGT-AATGTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTGTA
*
47270632 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
47270666 GCACAAATCA
Statistics
Matches: 242, Mismatches: 48, Indels: 50
0.71 0.14 0.15
Matches are distributed among these distances:
43 5 0.02
44 29 0.12
45 8 0.03
46 40 0.17
47 82 0.34
48 44 0.18
49 18 0.07
50 15 0.06
51 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA
Found at i:47270554 original size:94 final size:93
Alignment explanation
Indices: 47270304--47270662 Score: 286
Period size: 94 Copynumber: 3.8 Consensus size: 93
47270294 GGATATATTG
* * * * * *
47270304 CCGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATATACG-CATGCTGATGCATATCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-A-A-GTC-GGCCGATACATGTCCC
*
47270368 AGACATGTCTTACACTAGCA--CAACTCT-TA
62 AGACATGTCTTACACTAGCACTCATCTCTGTA
* * *** * *
47270397 GCCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCTCTGTCGAGGCCAATGCATGTCCCA
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAAAGTC--GGCCGATACATGTCCCA
* *
47270460 GACATGTCTTATACTGGCACTCATCTCTGTA
63 GACATGTCTTACACTAGCACTCATCTCTGTA
* * *
47270491 CCGATGCCATGTCACAGACATGGTCTTACACTTGCTATCAAAGTACGGCTGATACATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAAAGT-CGGCCGATACATGTCCCAGA
* * * *
47270556 CATGTCTTACACTAGCCCTCGTCT-GGATG
65 CATGTCTTACACTAGCACTCATCTCTG-TA
* ** * * *
47270585 CCGGTGCCATGTCCTGGACATGGTCTTACACTAGCTCTCGTAATGT-GGCCGA-AGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--AAAGTCGGCCGATA-CATGTCCCA
47270648 GACATGTCTTACACT
63 GACATGTCTTACACT
47270663 GGCGCACAAA
Statistics
Matches: 215, Mismatches: 38, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
89 1 0.00
90 1 0.00
91 31 0.14
92 15 0.07
93 26 0.12
94 118 0.55
95 18 0.08
96 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAAAGTCGGCCGATACATGTCCCAGAC
ATGTCTTACACTAGCACTCATCTCTGTA
Found at i:47278097 original size:47 final size:45
Alignment explanation
Indices: 47277944--47278305 Score: 256
Period size: 47 Copynumber: 7.7 Consensus size: 45
47277934 GGATATATTA
*
47277944 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATATACGCGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTC-TGTA---G-G
* * * *
47277994 CTGATGCATGTCCCAAACATGTCTTACACTAGCATAACTCT-TA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAGG
* *
47278038 CCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--AGG
*
47278085 CCGATGCATGTCCTAGACATGTCTTACACTGGTACTCATCTCTGT--G
1 CCGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAGG
* * *
47278131 TCAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-GG
* * * * *
47278179 CTGATGCATGTCCCAGACATGTCTTACACTAGCCCTA-GTCTGGATG
1 CCGATGCATGTCCCAGACATGTCTTACACT-G-GCTATCTCTGTAGG
* * * *
47278225 TCGATGCCATGTCCCAGATATGGTCTTAGACTGGCTATCATAATGT-GG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAGG
* *
47278273 CAGATGGATGTCCCAGACATGTCTTACACTGGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC
47278306 GCACAAATCG
Statistics
Matches: 249, Mismatches: 39, Indels: 52
0.73 0.11 0.15
Matches are distributed among these distances:
43 6 0.02
44 30 0.12
45 5 0.02
46 40 0.16
47 86 0.35
48 46 0.18
49 19 0.08
50 14 0.06
51 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAGG
Found at i:47278188 original size:94 final size:93
Alignment explanation
Indices: 47277945--47278302 Score: 381
Period size: 94 Copynumber: 3.8 Consensus size: 93
47277935 GATATATTAC
* *
47277945 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTCCCA
* * *
47278009 AACATGTCTTACACTAGCA-TAACTCT-TAGC
63 GACATGTCTTACACTAGCACTATCTCTGT-GT
* * * * *
47278039 CGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCTGATGCATGTCCCA
* *
47278100 GACATGTCTTACACTGGTACTCATCTCTGTGT
63 GACATGTCTTACACTAGCACT-ATCTCTGTGT
*
47278132 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
* *
47278197 ATGTCTTACACTAGCCCTAGTCT-GGATGT
66 ATGTCTTACACTAGCACTA-TCTCTG-TGT
* * * * * *
47278226 CGATGCCATGTCCCAGATATGGTCTTAGACTGGCTATCATAATGTGGCAGATGGATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
47278291 ATGTCTTACACT
66 ATGTCTTACACT
47278303 GGCGCACAAA
Statistics
Matches: 223, Mismatches: 28, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
91 31 0.14
92 18 0.08
93 26 0.12
94 127 0.57
95 20 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTATCTCTGTGT
Found at i:47280418 original size:27 final size:27
Alignment explanation
Indices: 47280387--47280487 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
47280377 TCTAGCCCCT
* *
47280387 AAGGGCATTTCGATAATTTTACAAGTC
1 AAGGGTATTTCGGTAATTTTACAAGTC
* * *
47280414 GAGGGTATTTCGGTAATTGTACAGGTC
1 AAGGGTATTTCGGTAATTTTACAAGTC
* * *
47280441 AAGGGTATTTCGGTAATTTCACAAATT
1 AAGGGTATTTCGGTAATTTTACAAGTC
* *
47280468 AGGGGTATTTTGGTAATTTT
1 AAGGGTATTTCGGTAATTTT
47280488 CCTTTATTAT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAGTC
Found at i:47284405 original size:55 final size:54
Alignment explanation
Indices: 47284318--47284572 Score: 278
Period size: 55 Copynumber: 4.8 Consensus size: 54
47284308 ATTAGGGTTT
*
47284318 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
47284373 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
47284428 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
47284481 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
47284530 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
47284573 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:47284524 original size:108 final size:110
Alignment explanation
Indices: 47284325--47284525 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
47284315 TTTAAGGATA
*
47284325 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
47284390 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
47284435 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
47284497 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
47284526 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:47284785 original size:16 final size:16
Alignment explanation
Indices: 47284764--47284794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47284754 ATAAATTTGA
47284764 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
47284780 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
47284795 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:47289288 original size:25 final size:25
Alignment explanation
Indices: 47289260--47289313 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
47289250 CTAAGAATTG
* * *
47289260 GTAAGCTCTTACGATATGATAATCA
1 GTAAGCTCTCACGAGATGAAAATCA
*
47289285 GTAAGCTCTCACGAGCTGAAAATCA
1 GTAAGCTCTCACGAGATGAAAATCA
47289310 GTAA
1 GTAA
47289314 TCCCTAATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (25 bp):
GTAAGCTCTCACGAGATGAAAATCA
Found at i:47293876 original size:23 final size:23
Alignment explanation
Indices: 47293846--47293892 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
47293836 TTGAATCAGA
47293846 TAGACTAGATAGTACATCTAATG
1 TAGACTAGATAGTACATCTAATG
47293869 TAGACTAGATAGTACATCTAATG
1 TAGACTAGATAGTACATCTAATG
47293892 T
1 T
47293893 TATTTCAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (23 bp):
TAGACTAGATAGTACATCTAATG
Found at i:47311184 original size:29 final size:29
Alignment explanation
Indices: 47311142--47311199 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
47311132 ACCAGAAACA
*
47311142 TGAAATCTCTAATGACATGTCATTTGTAT
1 TGAAATCCCTAATGACATGTCATTTGTAT
47311171 TGAAATCCCTAATGACATGTCATTTGTAT
1 TGAAATCCCTAATGACATGTCATTTGTAT
47311200 CATAAGAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (29 bp):
TGAAATCCCTAATGACATGTCATTTGTAT
Found at i:47312400 original size:27 final size:27
Alignment explanation
Indices: 47312370--47312431 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
47312360 GTGATTTTTA
47312370 GTGAAATGTCTA-ATTAGGGATTAAATT
1 GTGAAATGTCTACATTAGGG-TTAAATT
* * *
47312397 GTGAAATGTGTACTTTTTGGGTTAAATT
1 GTGAAATGTCTAC-ATTAGGGTTAAATT
47312425 GTGAAAT
1 GTGAAAT
47312432 AAATGAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 11 0.37
28 14 0.47
29 5 0.17
ACGTcount: A:0.32, C:0.03, G:0.24, T:0.40
Consensus pattern (27 bp):
GTGAAATGTCTACATTAGGGTTAAATT
Found at i:47324070 original size:40 final size:40
Alignment explanation
Indices: 47324008--47324092 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
47323998 CAATCTTTCT
* * **
47324008 CTTCATGATTTTTCCAATTATAATTCTTTATGGTTTCATC
1 CTTCATGAGTTTTCCAAGTATAATTCTTTACAGTTTCATC
*
47324048 CTTCATGAGTTTTCTAAGTATAATTCTTTACAGTTTCATC
1 CTTCATGAGTTTTCCAAGTATAATTCTTTACAGTTTCATC
47324088 CTTCA
1 CTTCA
47324093 AGTAAATAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (40 bp):
CTTCATGAGTTTTCCAAGTATAATTCTTTACAGTTTCATC
Found at i:47329628 original size:14 final size:13
Alignment explanation
Indices: 47329587--47329633 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
47329577 ACATACGATG
47329587 GATGGTATTATTTT
1 GATGG-ATTATTTT
* *
47329601 GTTGGATCATTTT
1 GATGGATTATTTT
47329614 GATGGATGTATTTT
1 GATGGAT-TATTTT
47329628 GATGGA
1 GATGGA
47329634 CAGTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 13 0.46
14 15 0.54
ACGTcount: A:0.21, C:0.02, G:0.28, T:0.49
Consensus pattern (13 bp):
GATGGATTATTTT
Found at i:47329647 original size:45 final size:45
Alignment explanation
Indices: 47329594--47329690 Score: 149
Period size: 45 Copynumber: 2.1 Consensus size: 45
47329584 ATGGATGGTA
* * *
47329594 TTATTTTGTTGGATCATTTTGATGGATGTATTTTGATGGACAGTT
1 TTATTTTGTTGAATCATTCTGATGGATGTATTTTGATGGACAATT
*
47329639 TTATTTTGTTGAATCATTCTGATGGTTGTATTTTGATGGACAATT
1 TTATTTTGTTGAATCATTCTGATGGATGTATTTTGATGGACAATT
47329684 TGTATTT
1 T-TATTT
47329691 ATCCTTTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 42 0.89
46 5 0.11
ACGTcount: A:0.21, C:0.05, G:0.22, T:0.53
Consensus pattern (45 bp):
TTATTTTGTTGAATCATTCTGATGGATGTATTTTGATGGACAATT
Found at i:47329923 original size:14 final size:16
Alignment explanation
Indices: 47329904--47329936 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
47329894 CATTAGTTTG
47329904 TTTTTCCTT-TAC-AT
1 TTTTTCCTTGTACAAT
47329918 TTTTTCCTTGTACAAT
1 TTTTTCCTTGTACAAT
47329934 TTT
1 TTT
47329937 ATCTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 3 0.18
16 5 0.29
ACGTcount: A:0.15, C:0.18, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTTTCCTTGTACAAT
Found at i:47330588 original size:56 final size:56
Alignment explanation
Indices: 47330507--47330620 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
47330497 GATTGAGACA
* *
47330507 AATTTGATAAGATTTTATTTCTTTCTTTATTTATGATTGAGTCAAACCTTGATTAT
1 AATTTGATAAGATTTTATTTCTTTCTTTATCTAGGATTGAGTCAAACCTTGATTAT
* * * *
47330563 AATTTGATGAGATTTTATTTGTTTCTTTATCTAGGATTGATTCAATCCTTGATTAT
1 AATTTGATAAGATTTTATTTCTTTCTTTATCTAGGATTGAGTCAAACCTTGATTAT
47330619 AA
1 AA
47330621 GGATTCTNNN
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.28, C:0.09, G:0.12, T:0.51
Consensus pattern (56 bp):
AATTTGATAAGATTTTATTTCTTTCTTTATCTAGGATTGAGTCAAACCTTGATTAT
Found at i:47335223 original size:13 final size:13
Alignment explanation
Indices: 47335197--47335233 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
47335187 GTTATTTCTA
* *
47335197 TATCTGTATATTG
1 TATCTATATTTTG
47335210 TATCTATATTTTG
1 TATCTATATTTTG
47335223 TATCTATATTT
1 TATCTATATTT
47335234 AGGGTTGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.59
Consensus pattern (13 bp):
TATCTATATTTTG
Found at i:47337344 original size:11 final size:11
Alignment explanation
Indices: 47337328--47337352 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
47337318 ACATATGCTC
47337328 TTCTCTTTTTT
1 TTCTCTTTTTT
47337339 TTCTCTTTTTT
1 TTCTCTTTTTT
47337350 TTC
1 TTC
47337353 GCGACCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTCTCTTTTTT
Found at i:47343782 original size:24 final size:23
Alignment explanation
Indices: 47343728--47343782 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
47343718 AAAATTCCTT
* * *
47343728 AAAAACTTGTAAAAATTATTAGTT
1 AAAAA-TTCTAAAAATTATAAGTC
47343752 AAAAATTCTAAAAATTATAATGTC
1 AAAAATTCTAAAAATTATAA-GTC
*
47343776 AAGAATT
1 AAAAATT
47343783 AATTTTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (23 bp):
AAAAATTCTAAAAATTATAAGTC
Found at i:47343814 original size:20 final size:21
Alignment explanation
Indices: 47343785--47343826 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47343775 CAAGAATTAA
*
47343785 TTTTATAA-TTTGTATGATTT
1 TTTTACAATTTTGTATGATTT
*
47343805 TTTTACAATTTTTTATGATTT
1 TTTTACAATTTTGTATGATTT
47343826 T
1 T
47343827 ATAAAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTTACAATTTTGTATGATTT
Found at i:47348747 original size:34 final size:34
Alignment explanation
Indices: 47348709--47348777 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
47348699 GTTTAATAAA
*
47348709 TTCGTTTTAGTGATAATTTAGCATATATTTTTAC
1 TTCGTTTTAATGATAATTTAGCATATATTTTTAC
47348743 TTCGTTTTAATGATAATTTAGCATATATTTTTAC
1 TTCGTTTTAATGATAATTTAGCATATATTTTTAC
47348777 T
1 T
47348778 AAGGCATTGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.54
Consensus pattern (34 bp):
TTCGTTTTAATGATAATTTAGCATATATTTTTAC
Found at i:47353434 original size:27 final size:26
Alignment explanation
Indices: 47353404--47353458 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
47353394 ACTGGGAGAT
* *
47353404 TATCTTTTAAATTTTGACTGAAATAAG
1 TATCTTTTAAA-TTTAACTAAAATAAG
47353431 TATCTTTTAAATTTAACTAAAATAAG
1 TATCTTTTAAATTTAACTAAAATAAG
47353457 TA
1 TA
47353459 GCATACTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (26 bp):
TATCTTTTAAATTTAACTAAAATAAG
Found at i:47354908 original size:22 final size:22
Alignment explanation
Indices: 47354878--47354921 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
47354868 ATCCGAACTT
*
47354878 GCCATAGATTGAAATTTGTGAA
1 GCCACAGATTGAAATTTGTGAA
*
47354900 GCCACAGATTGGAATTTGTGAA
1 GCCACAGATTGAAATTTGTGAA
47354922 ACCATCGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (22 bp):
GCCACAGATTGAAATTTGTGAA
Found at i:47357985 original size:16 final size:16
Alignment explanation
Indices: 47357964--47358032 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
47357954 TTTGGTTCGC
47357964 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
47357980 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
47357996 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
47358013 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
47358029 TGTA
1 TGTA
47358033 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:47358010 original size:33 final size:32
Alignment explanation
Indices: 47357964--47358032 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
47357954 TTTGGTTCGC
47357964 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
47357996 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
47358029 TGTA
1 TGTA
47358033 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:47358097 original size:44 final size:45
Alignment explanation
Indices: 47358013--47358126 Score: 114
Period size: 45 Copynumber: 2.6 Consensus size: 45
47358003 GGATTAGAGG
* * *
47358013 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTAAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
***
47358058 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T---
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
*
47358098 TG-AATGGAATAGAGGTGTAATAGCATAAT
1 TGTAATGGAATAGAGGCGTAATAGC-TAAT
47358127 GGAAAAAACT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
39 20 0.33
40 2 0.03
41 4 0.07
43 1 0.02
44 12 0.20
45 21 0.35
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTAAA
Found at i:47358289 original size:18 final size:17
Alignment explanation
Indices: 47358268--47358302 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47358258 TTATTATTAA
*
47358268 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47358286 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47358303 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47358388 original size:120 final size:120
Alignment explanation
Indices: 47358251--47358759 Score: 975
Period size: 120 Copynumber: 4.2 Consensus size: 120
47358241 ATCATATTTA
47358251 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
47358316 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
47358371 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
47358436 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
47358491 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
47358556 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
47358611 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
47358676 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTAGT-AAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACT-GTAAAATATAAATT
*
47358731 AACATAATTATTATTAAATATAATTTAAT
1 AACATAATTATTATTAAATATATTTTAAT
47358760 ACATGTCGTC
Statistics
Matches: 384, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
120 382 0.99
121 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:47358529 original size:18 final size:17
Alignment explanation
Indices: 47358508--47358542 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47358498 TTATTATTAA
*
47358508 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47358526 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47358543 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47358649 original size:18 final size:17
Alignment explanation
Indices: 47358628--47358662 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47358618 TTATTATTAA
*
47358628 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47358646 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47358663 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47367251 original size:8 final size:9
Alignment explanation
Indices: 47367231--47367265 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
47367221 ATATTACAAC
47367231 AAAAATTTA
1 AAAAATTTA
47367240 AAAAATTTA
1 AAAAATTTA
47367249 AAAAATTT-
1 AAAAATTTA
47367257 AAAAATTTA
1 AAAAATTTA
47367266 GAAGAGTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AAAAATTTA
Found at i:47367254 original size:18 final size:17
Alignment explanation
Indices: 47367231--47367265 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
47367221 ATATTACAAC
47367231 AAAAATTTAAAAAATTTA
1 AAAAATTT-AAAAATTTA
47367249 AAAAATTTAAAAATTTA
1 AAAAATTTAAAAATTTA
47367266 GAAGAGTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATTTAAAAATTTA
Found at i:47373956 original size:30 final size:30
Alignment explanation
Indices: 47373922--47373981 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
47373912 ACTTAACAAG
47373922 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
47373952 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
47373982 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:47374615 original size:26 final size:26
Alignment explanation
Indices: 47374586--47374636 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
47374576 TAAAGAAGTT
* *
47374586 TGTTTACATAAACATATTTACCAAAC
1 TGTTCACATAAACACATTTACCAAAC
47374612 TGTTCACATAAACACATTTACCAAA
1 TGTTCACATAAACACATTTACCAAA
47374637 TAGTGTCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.31
Consensus pattern (26 bp):
TGTTCACATAAACACATTTACCAAAC
Found at i:47380016 original size:66 final size:66
Alignment explanation
Indices: 47379907--47380044 Score: 213
Period size: 66 Copynumber: 2.1 Consensus size: 66
47379897 AGATTGAAAT
*
47379907 ATCTGATGTCATGTGATTTGTGCAGCCACTGTCTATAAGCCATCCCTTCGTGGCCTTCTCCTTAG
1 ATCTGATGTCATGTGATTTGTGCAGCCACTGTCTATAAACCATCCCTTCGTGGCCTTCTCCTTAG
47379972 C
66 C
* * * **
47379973 ATCTGGTGTCATTTGATTTGTGCAGCCACTGTCTATAAACCATCCCTTTGTGGTTTTCTCCTTAG
1 ATCTGATGTCATGTGATTTGTGCAGCCACTGTCTATAAACCATCCCTTCGTGGCCTTCTCCTTAG
47380038 C
66 C
*
47380039 AGCTGA
1 ATCTGA
47380045 GCATGAAACT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.37
Consensus pattern (66 bp):
ATCTGATGTCATGTGATTTGTGCAGCCACTGTCTATAAACCATCCCTTCGTGGCCTTCTCCTTAG
C
Found at i:47381825 original size:27 final size:27
Alignment explanation
Indices: 47381788--47381846 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
47381778 GGATGTAAGG
*
47381788 ATTATTAAATTAAGTCTGCTATAATGT
1 ATTATTAAATTAAGTCTGCTATAAAGT
47381815 ATTATTAAATTAAGTCTGCTATAAAGT
1 ATTATTAAATTAAGTCTGCTATAAAGT
47381842 ATTAT
1 ATTAT
47381847 CTGTTGAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (27 bp):
ATTATTAAATTAAGTCTGCTATAAAGT
Found at i:47382178 original size:2 final size:2
Alignment explanation
Indices: 47382171--47382195 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47382161 TTTTTACCAA
47382171 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
47382196 TAATCTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:47382761 original size:10 final size:10
Alignment explanation
Indices: 47382725--47382759 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
47382715 ACTTACATGT
47382725 TATATATATG
1 TATATATATG
47382735 TATATATATG
1 TATATATATG
47382745 TATATTATAT-
1 TATA-TATATG
47382755 TATAT
1 TATAT
47382760 TAATAATTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 1 0.04
10 18 0.75
11 5 0.21
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (10 bp):
TATATATATG
Found at i:47384634 original size:48 final size:48
Alignment explanation
Indices: 47384545--47384647 Score: 120
Period size: 48 Copynumber: 2.1 Consensus size: 48
47384535 CTCTCCTATC
*
47384545 CTTCTCCCTCTTCCCTACCATCCTTCTCCCTACTCTAATTCTCTCTCCT
1 CTTCTCCCTCTTCCCCACCATCCTTCTCCCTACTCTAATTCTCTC-CCT
* * * *
47384594 CTTC-CCCTCTTCCCCACCATCCCTTCT-CTTACTTTGATTCTTTCCCT
1 CTTCTCCCTCTTCCCCACCAT-CCTTCTCCCTACTCTAATTCTCTCCCT
*
47384641 CTCCTCC
1 CTTCTCC
47384648 ACCGTCCCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
47 6 0.13
48 30 0.65
49 10 0.22
ACGTcount: A:0.09, C:0.50, G:0.01, T:0.41
Consensus pattern (48 bp):
CTTCTCCCTCTTCCCCACCATCCTTCTCCCTACTCTAATTCTCTCCCT
Found at i:47385589 original size:30 final size:30
Alignment explanation
Indices: 47385521--47385589 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
47385511 TAGGGGGAAA
* * *
47385521 GAAAATGGCAGCTCCGTTAAGTTTGTAACG
1 GAAAATGGTAGCTCCGTTAAGTCTATAACG
* *
47385551 GAAAATGGTAGCTTCGTTACGTCTATAACG
1 GAAAATGGTAGCTCCGTTAAGTCTATAACG
47385581 GAAAATGGT
1 GAAAATGGT
47385590 TAGTGGTGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GAAAATGGTAGCTCCGTTAAGTCTATAACG
Found at i:47389729 original size:26 final size:26
Alignment explanation
Indices: 47389700--47389753 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
47389690 AACAAGAGTT
*
47389700 ATAAATCACTTATATCCTTACAAATA
1 ATAAATCACCTATATCCTTACAAATA
47389726 ATAAATCACCTATATCCTTACAAATA
1 ATAAATCACCTATATCCTTACAAATA
47389752 AT
1 AT
47389754 TCCCTGAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.33
Consensus pattern (26 bp):
ATAAATCACCTATATCCTTACAAATA
Found at i:47392359 original size:40 final size:40
Alignment explanation
Indices: 47392275--47392459 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
47392265 TTGAATGCTG
* * * *
47392275 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
* *
47392315 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
47392355 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * * *
47392395 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
47392434 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47392460 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 82 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:47400229 original size:40 final size:39
Alignment explanation
Indices: 47400198--47400407 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
47400188 GGACTAAGAT
* *
47400198 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
47400238 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
47400278 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
47400318 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
47400358 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
47400397 CCGAAGGCATT
1 CCGAAGGCATT
47400408 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:47400361 original size:120 final size:120
Alignment explanation
Indices: 47400145--47400407 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
47400135 TTGAATGCTG
* *
47400145 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
47400209 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
47400265 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
47400328 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
47400384 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
47400408 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:47400427 original size:79 final size:80
Alignment explanation
Indices: 47400146--47400442 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
47400136 TGAATGCTGT
* ** * * * **
47400146 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
47400209 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
47400226 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
47400290 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
47400306 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
47400370 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
47400385 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
47400443 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:47402230 original size:547 final size:545
Alignment explanation
Indices: 47401212--47402278 Score: 1658
Period size: 547 Copynumber: 2.0 Consensus size: 545
47401202 ACAAGAATTC
* * * *
47401212 GTAGGAGTGGAATTAAATAGTGAATAAATTATGTAATCGAACCTTGATGAATCTACTTTCATATG
1 GTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCTTGAAGAATCTACTTTCATATG
** *
47401277 GAAGTAACGAAACAATCATAGGAACAGTACAGTAAGAGATATTCGGGTTCTTGTGGAACAGGGCC
66 GAAGTAACGAAACAATCATAGGAACAGTACAGTAAGAGATATTAAGGTTCTCGTGGAACAGGGCC
* *
47401342 AGAACAGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCACTATAAATTGACCAGAGATAATTA
131 AGAACAGGTTCTGGATTCCCTGTTCCGACTTTGGAAATTCACTATAAATTAACCAGAGATAATTA
* *
47401407 GGGGTCATACCATATATGTATGGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCATCA
196 GGAGTCATACCATATATGTATAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCATCA
* * * *
47401472 GTATTGAAGCTCTGTGCAGAGAGATATCCCAGTCGTAATGGGAAAAGGTCAGTGTAGTCGACCCC
261 GTATTGAAGCCCTGTACAGAGAGATATCCAAGTCGTAATGGGAAAAGGTCAGGGTAGTCGACCCC
*
47401537 TGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAA
326 TGTAACATGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAA
* * *
47401602 ATACATAGGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTCGAGTTGTGA
391 ATACATAGATGGGCACATGAGTCTAGTTTCAGGAAAAAATCACAAAACTGATTTTCGAGTTGTGA
* *
47401667 AACTCAAGATATGATTTTTGAAGCGACTAGTACTCAGACTGGGCAGTGTCTGGAAAAATTTTTCA
456 AACTCAAGATATGATTTTTAAAGCGACTAGTACACAGACTGGGCAGTGTCTGG--AAATTTTTCA
47401732 AATAGATTTGGAAAATCACTAAAAATA
519 AATAGATTTGGAAAATCACTAAAAATA
47401759 GTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCTTGAAGAATCTACTTTCATA-G
1 GTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCTTGAAGAATCTACTTTCATATG
*
47401823 GAAAGTAACGAAACAATCATACGG-ACAGTA-TGTTAAGAGATATTAAGGTTCTCGT-GAGACAG
66 G-AAGTAACGAAACAATCATA-GGAACAGTACAG-TAAGAGATATTAAGGTTCTCGTGGA-ACAG
* * * * * *
47401885 GGTCAGAACGGGTTCTGGGTTCCTTGTTCCGACTTTGGAAATTGATTATAAATTAACCAGAGATA
127 GGCCAGAACAGGTTCTGGATTCCCTGTTCCGACTTTGGAAATTCACTATAAATTAACCAGAGATA
* *
47401950 ATTAGGAGTCATACCATATATGTATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAATAAACGGC
192 ATTAGGAGTCATACCATATATGTATAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGC
* * *
47402015 ATCAGTATTGGAGCCCTGTACA-AGGAGATATCCAAGTCGTAATGTGCAAAGGTCAGGGTAGTCG
257 ATCAGTATTGAAGCCCTGTACAGA-GAGATATCCAAGTCGTAATGGGAAAAGGTCAGGGTAGTCG
** *
47402079 ATTCCTGTAACATGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCGATCAAAAATTCTAGA
321 ACCCCTGTAACATGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGA
** * *
47402144 AAAAAATATGTAGATGGGCATATGAGTCTAGTTTCAGGAAAAAATCACGAAACTGATTTTCGAGT
386 AAAAAATACATAGATGGGCACATGAGTCTAGTTTCAGGAAAAAATCACAAAACTGATTTTCGAGT
* *
47402209 TGTGAAGCTCAAGATATGATTTTTAAAGCGACTAGTACACAGATTGGGCAGTGTCTGGAAATTTT
451 TGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACACAGACTGGGCAGTGTCTGGAAATTTT
47402274 TCAAA
516 TCAAA
47402279 GTTTGTTAAC
Statistics
Matches: 473, Mismatches: 42, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
545 12 0.03
546 6 0.01
547 453 0.96
548 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (545 bp):
GTAGGAATGGAATTAAATAGTGAATAAATTATGTAAACAAACCTTGAAGAATCTACTTTCATATG
GAAGTAACGAAACAATCATAGGAACAGTACAGTAAGAGATATTAAGGTTCTCGTGGAACAGGGCC
AGAACAGGTTCTGGATTCCCTGTTCCGACTTTGGAAATTCACTATAAATTAACCAGAGATAATTA
GGAGTCATACCATATATGTATAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAAACGGCATCA
GTATTGAAGCCCTGTACAGAGAGATATCCAAGTCGTAATGGGAAAAGGTCAGGGTAGTCGACCCC
TGTAACATGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAA
ATACATAGATGGGCACATGAGTCTAGTTTCAGGAAAAAATCACAAAACTGATTTTCGAGTTGTGA
AACTCAAGATATGATTTTTAAAGCGACTAGTACACAGACTGGGCAGTGTCTGGAAATTTTTCAAA
TAGATTTGGAAAATCACTAAAAATA
Found at i:47402842 original size:48 final size:47
Alignment explanation
Indices: 47402783--47403051 Score: 288
Period size: 48 Copynumber: 5.6 Consensus size: 47
47402773 TATGTGTGCC
* * *
47402783 AGTGTAAGACCATTTCTGGGACATGGCATCGACCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-CCATGATATGAGAGCT
* * * * * * *
47402831 AGTGTAAGACCATGTTTGGAACATGACATCAACGATGTTGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGATATGAGAGCT
* * * * *
47402879 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGTGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCA-TGATATGAGAGCT
* * *
47402927 AGTGTACGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCA-TGATATGAGAGCT
* * *
47402975 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGACATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGCCATGATATG-AGAGCT
47403023 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
47403052 TGGCAATTCA
Statistics
Matches: 186, Mismatches: 31, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.01
48 180 0.97
49 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCATGATATGAGAGCT
Found at i:47403035 original size:144 final size:144
Alignment explanation
Indices: 47402770--47403056 Score: 373
Period size: 144 Copynumber: 2.0 Consensus size: 144
47402760 GACATTTGGG
* *
47402770 TGATATGTGTGCCAGTGTAAGACCATTTCTGGGACATGGCATCGACCACGATATGAGAGCCAGTG
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAGATGAGAGCCAGTG
* * *
47402835 TAAGACCATGTTTGGAACATGACATCAACGATGTTGTGAGAGCTAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCTGGAACATGACATCAACCATGATGTGAGAGCTAGTGTAAGACCATGTCTGGGA
47402900 CATGGCATTGGCAT
131 CATGGCATTGGCAT
* * * * * *
47402914 TGATGTGTGTGCTAGTGTACGACCATGTCTGGGACATGGCATCG-GCATTGAGATGAGAGCTAGT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CGAGATGAGAGCCAGT
* * *** *
47402978 GTAAGACCATGTCTGGGACATGGCATTGGCCTTGACATGT-A-AGCTAGTGTAAGACCATGTCTG
65 GTAAGACCATGTCTGGAACATGACATCAACCATG--ATGTGAGAGCTAGTGTAAGACCATGTCTG
47403041 GGACATGGCATTGGCA
128 GGACATGGCATTGGCA
47403057 ATTCACCCTA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
143 2 0.02
144 117 0.95
145 1 0.01
146 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (144 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGAGATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGACATCAACCATGATGTGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATTGGCAT
Found at i:47403048 original size:96 final size:95
Alignment explanation
Indices: 47402783--47403056 Score: 327
Period size: 96 Copynumber: 2.9 Consensus size: 95
47402773 TATGTGTGCC
* * * ** * *
47402783 AGTGTAAGACCATTTCTGGGACATGGCATCGACCACGATATG-AGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTA-AGCTAGTGTAAGACCATGTC
* * ** *
47402847 TGGAACATGACATCAACGATGTTGTGAGAGCT
65 TGGGACATGGCATCGGC-ATGTAGTGAGAGCT
* * ** *
47402879 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGTGTGTGCTAGTGTACGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTAAGCTAGTGTAAGACCATGTCT
47402944 GGGACATGGCATCGGCAT-TGAGATGAGAGCT
66 GGGACATGGCATCGGCATGT-AG-TGAGAGCT
*
47402975 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGACATGTAAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTAAGCTAGTGTAAGACCATGTCT
*
47403040 GGGACATGGCATTGGCA
66 GGGACATGGCATCGGCA
47403057 ATTCACCCTA
Statistics
Matches: 151, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
94 1 0.01
95 3 0.02
96 147 0.97
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTTGATATGTAAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATGTAGTGAGAGCT
Found at i:47411208 original size:46 final size:46
Alignment explanation
Indices: 47411158--47411333 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
47411148 TGGTTGAGCA
47411158 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47411204 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
47411249 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47411297 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47411334 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47411314 original size:93 final size:93
Alignment explanation
Indices: 47411155--47411326 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
47411145 GGATGGTTGA
* *
47411155 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
47411220 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
47411248 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
47411313 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
47411327 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47413345 original size:48 final size:48
Alignment explanation
Indices: 47413283--47413604 Score: 267
Period size: 48 Copynumber: 6.7 Consensus size: 48
47413273 TGATATGTGT
* *
47413283 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGATATGAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAAA
* * * ** *
47413331 TCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGATG-T-TGTAAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATG-AA-A
* * * * ***
47413379 GCCAGTGTATGACCATGTCTAGGACATGGCATCGG-CATTGATGTGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAAA
* * * * *
47413427 GCTAGTGTAAGACCATGTCTGAGG-CATGGCATCGGCCACAACATTAGA
1 GCCAGTGTAAGACCATGTCTG-GGACATGGCATCGGCCACGATATGAAA
* * * * * * *
47413475 GCCAGTGTAAGACCATGTCTAGGACATAGTATCGG-CATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAAA
* * * * *
47413523 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAAA
*
47413571 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
47413605 ACAATTTATC
Statistics
Matches: 214, Mismatches: 50, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
46 2 0.01
47 8 0.04
48 196 0.92
49 6 0.03
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAAA
Found at i:47413538 original size:144 final size:143
Alignment explanation
Indices: 47413273--47413606 Score: 370
Period size: 144 Copynumber: 2.3 Consensus size: 143
47413263 GACATTTGGG
* * * *
47413273 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGATATGAAATCCAGTG
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAAAGCCAGTG
* * ** *
47413338 TAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTAAGAGCCAGTGTATGACCATGTCTAGGA
66 TAAGACCATGTTAGGAACATAGCATCGGTGATGACG-AAGAGCCAGTGTAAGACCATGTCTAGGA
47413403 CATGGCATCGGCAT
130 CATGGCATCGGCAT
* * * * *
47413417 TGATGTGTGTGCTAGTGTAAGACCATGTCTGAGG-CATGGCATCGGCCACAACATTAGAGCCAGT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTG-GGACATGGCATCGACCACAACATGAAAGCCAGT
* *
47413481 GTAAGACCATGTCTAGG-ACATAGTATCGGCATTGA-GACG-AGAGCTAGTGTAAGACCATGTCT
65 GTAAGACCATGT-TAGGAACATAGCATCGG---TGATGACGAAGAGCCAGTGTAAGACCATGTCT
* * *
47413543 GGGACATGGCATTGGCCT
126 AGGACATGGCATCGGCAT
* * ** *
47413561 CGACATGTAAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
47413607 AATTTATCCT
Statistics
Matches: 157, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
143 2 0.01
144 145 0.92
145 5 0.03
146 2 0.01
147 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (143 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAAAGCCAGTG
TAAGACCATGTTAGGAACATAGCATCGGTGATGACGAAGAGCCAGTGTAAGACCATGTCTAGGAC
ATGGCATCGGCAT
Found at i:47416512 original size:39 final size:38
Alignment explanation
Indices: 47416458--47416556 Score: 135
Period size: 39 Copynumber: 2.6 Consensus size: 38
47416448 GCTCTAATGA
* *
47416458 GCTTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTTCGTTTA-AACTTATGT
*
47416497 GCTTCAGTTAGCCTTCGGGCTTTTGTTTAAACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTTCGTTTAAACTTATGT
* **
47416535 GCTTCAGCTAAACTTCGGGCTT
1 GCTTCAGTTAGCCTTCGGGCTT
47416557 CCGATCACTA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
38 26 0.48
39 28 0.52
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.40
Consensus pattern (38 bp):
GCTTCAGTTAGCCTTCGGGCTTTCGTTTAAACTTATGT
Found at i:47416551 original size:38 final size:39
Alignment explanation
Indices: 47416470--47416556 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 39
47416460 TTCAGTTAGC
* * * **
47416470 CTTCGGGCTTTCGTTTAGCACTTGTGTGCTTCAGTTAGC
1 CTTCGGGCTTTCGTTTAGAACTTATGTGCTTCAGCTAAA
*
47416509 CTTCGGGCTTTTGTTTA-AACTTATGTGCTTCAGCTAAA
1 CTTCGGGCTTTCGTTTAGAACTTATGTGCTTCAGCTAAA
47416547 CTTCGGGCTT
1 CTTCGGGCTT
47416557 CCGATCACTA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
38 26 0.62
39 16 0.38
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.41
Consensus pattern (39 bp):
CTTCGGGCTTTCGTTTAGAACTTATGTGCTTCAGCTAAA
Found at i:47428342 original size:27 final size:28
Alignment explanation
Indices: 47428312--47428546 Score: 230
Period size: 27 Copynumber: 8.5 Consensus size: 28
47428302 ATATTAAGTC
* *
47428312 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47428339 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47428367 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47428395 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
** ** *
47428423 CGCACACTTAGTGCCGCATGGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* **
47428450 CGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAATCAAACT
* * **
47428477 CGCACACTTAGTGCAACATAGTC-AGGT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
47428504 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
47428533 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47428547 CAATCTCATG
Statistics
Matches: 182, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
27 83 0.46
28 81 0.45
29 18 0.10
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:47428401 original size:56 final size:55
Alignment explanation
Indices: 47428312--47428546 Score: 249
Period size: 56 Copynumber: 4.3 Consensus size: 55
47428302 ATATTAAGTC
* *
47428312 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
* *
47428367 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTATATAATCAAACT
** ** * * **
47428423 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTAT-ATAATCAAACT
* * ** * * * *
47428477 CGCACACTTAGTGCAACATAGTCAGGTCGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAA-TCAAACT
47428533 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47428547 CAATCTCATG
Statistics
Matches: 150, Mismatches: 25, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
54 41 0.27
55 45 0.30
56 64 0.43
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:47430534 original size:20 final size:20
Alignment explanation
Indices: 47430493--47430534 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
47430483 ATTTCATTCA
*
47430493 TTGCATTTAAATTATTTCAT
1 TTGCATTTAAATTATTTAAT
47430513 TTGCATTT-AATTAATTTAAT
1 TTGCATTTAAATT-ATTTAAT
47430533 TT
1 TT
47430535 AACACCTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (20 bp):
TTGCATTTAAATTATTTAAT
Found at i:47434173 original size:9 final size:9
Alignment explanation
Indices: 47434159--47434185 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
47434149 ACAATGTTTC
47434159 ATTTTCCTT
1 ATTTTCCTT
47434168 ATTTTCCTT
1 ATTTTCCTT
47434177 ATTTTCCTT
1 ATTTTCCTT
47434186 CTTCATCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTCCTT
Found at i:47434195 original size:9 final size:9
Alignment explanation
Indices: 47434183--47434225 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
47434173 CCTTATTTTC
47434183 CTTCTTCAT
1 CTTCTTCAT
*
47434192 CTTCTTCCT
1 CTTCTTCAT
* *
47434201 TTTCTTTAT
1 CTTCTTCAT
*
47434210 CTTCTTCTT
1 CTTCTTCAT
47434219 CTTCTTC
1 CTTCTTC
47434226 CTACACCTGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.63
Consensus pattern (9 bp):
CTTCTTCAT
Found at i:47444337 original size:43 final size:43
Alignment explanation
Indices: 47444211--47444373 Score: 174
Period size: 43 Copynumber: 3.8 Consensus size: 43
47444201 CGATATGTTT
* * * * *
47444211 TTTCGAGTAAGACCACGTATGGGA-TGTTGGCATTGACT-TATGA
1 TTTCGTGTAAGACCATGTCTGGGACAG-TGGCATTGA-TATTTGA
47444254 TTTACGTGTAAGACCATGTCTGGGACA-TCGGCATTG-TATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATTGATATTTGA
*
47444297 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGA
* *
47444340 TTACATGTAAGACCATGTCTGGGAC-GTTGGCATT
1 TTTCGTGTAAGACCATGTCTGGGACAG-TGGCATT
47444374 TTATGAGCTT
Statistics
Matches: 104, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
42 31 0.30
43 48 0.46
44 25 0.24
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCATGTCTGGGACAGTGGCATTGATATTTGA
Found at i:47451334 original size:27 final size:26
Alignment explanation
Indices: 47451316--47451366 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
47451306 TTTACAGTAC
47451316 AAAGGTATTTTGGTAATTTTACCAACT
1 AAAGGTATTTTGGTAATTTTA-CAACT
**
47451343 AGGGGTATTTTGGTAATTTTACAA
1 AAAGGTATTTTGGTAATTTTACAA
47451367 ACGAGGTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
AAAGGTATTTTGGTAATTTTACAACT
Found at i:47457933 original size:43 final size:42
Alignment explanation
Indices: 47457852--47457960 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
47457842 GAATTATGAT
* *
47457852 TTACGTGTAAGACCATGTCTAGGACATCGACATCATATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACATCGACATCATATTTGA
** * *
47457894 TTTTGTGTAAGACCCTGTCTGGGACAGT-GGCGTCGATATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACA-TCGACATC-ATATTTGA
*
47457937 TTACATGTAAGACCAC-GTCTGGGA
1 TTACGTGTAAGACC-CTGTCTGGGA
47457961 TGTTGGCATT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.47
43 28 0.51
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACATCGACATCATATTTGA
Found at i:47464906 original size:23 final size:23
Alignment explanation
Indices: 47464880--47464927 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
47464870 TCAATTTTAT
47464880 CCTAGGCAAAATTACCATTTTGC
1 CCTAGGCAAAATTACCATTTTGC
47464903 CCTAGGCAAAATTACCATTTTGC
1 CCTAGGCAAAATTACCATTTTGC
47464926 CC
1 CC
47464928 CTAACTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (23 bp):
CCTAGGCAAAATTACCATTTTGC
Found at i:47477833 original size:41 final size:41
Alignment explanation
Indices: 47477788--47477882 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
47477778 TGCGGTTACT
**
47477788 TGACAGCTTGTGTGAGTAGCACCGAGTAGGTACATCTTGAC
1 TGACAGCTTGTGTGAACAGCACCGAGTAGGTACATCTTGAC
*
47477829 TGACAGCTTGTGTGAACAGCACCGAGTAGGTACGTCTTGAC
1 TGACAGCTTGTGTGAACAGCACCGAGTAGGTACATCTTGAC
* *
47477870 TGATATCTTGTGT
1 TGACAGCTTGTGT
47477883 AAGCAGGCCC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
TGACAGCTTGTGTGAACAGCACCGAGTAGGTACATCTTGAC
Found at i:47480656 original size:38 final size:38
Alignment explanation
Indices: 47480605--47480700 Score: 95
Period size: 40 Copynumber: 2.5 Consensus size: 38
47480595 CCATCTCCGT
* * *
47480605 CCAACCC-ATCACACCATGTGGGGATAGAATCGACCCAC
1 CCAACCCTA-CACACCATATGAGGATAGAATCAACCCAC
** *
47480643 CCAACCCTACACACCAAGTATGAGGATTTAATCAACCCAT
1 CCAACCCTACACACC-A-TATGAGGATAGAATCAACCCAC
*
47480683 CCAACCCTACACGCCATA
1 CCAACCCTACACACCATA
47480701 AGGTACCTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
38 15 0.31
39 3 0.06
40 30 0.62
ACGTcount: A:0.34, C:0.38, G:0.12, T:0.16
Consensus pattern (38 bp):
CCAACCCTACACACCATATGAGGATAGAATCAACCCAC
Found at i:47487310 original size:13 final size:13
Alignment explanation
Indices: 47487292--47487318 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47487282 ATGAGAGTAC
47487292 TTTTAGGAAACCT
1 TTTTAGGAAACCT
47487305 TTTTAGGAAACCT
1 TTTTAGGAAACCT
47487318 T
1 T
47487319 ATCAAGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTTTAGGAAACCT
Found at i:47489530 original size:17 final size:17
Alignment explanation
Indices: 47489488--47489533 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
47489478 TATCATTTAC
47489488 CATTTATCGGGCATTAT
1 CATTTATCGGGCATTAT
* *
47489505 TATTGATCGGGCACTT-T
1 CATTTATCGGGCA-TTAT
47489522 CATTTATCGGGC
1 CATTTATCGGGC
47489534 TATAACAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (17 bp):
CATTTATCGGGCATTAT
Found at i:47492620 original size:24 final size:24
Alignment explanation
Indices: 47492588--47492634 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
47492578 CTTCCTCACT
47492588 CGATTGATGGCCACATTTAAAAGC
1 CGATTGATGGCCACATTTAAAAGC
47492612 CGATTGATGGCCACATTTAAAAG
1 CGATTGATGGCCACATTTAAAAG
47492635 TTTTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (24 bp):
CGATTGATGGCCACATTTAAAAGC
Found at i:47499174 original size:46 final size:46
Alignment explanation
Indices: 47499121--47499249 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
47499111 TATTTGGGCA
*
47499121 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
47499167 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
47499213 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47499250 GTGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:47502575 original size:34 final size:34
Alignment explanation
Indices: 47502537--47502606 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
47502527 GTGTCAAGGG
* * *
47502537 CAACCCACTAATGAAGTCCATCGTCACTCGTTAC
1 CAACCCACTAACGAAGTCCATCATCACTCGCTAC
47502571 CAACCCACTAACGAAGTCCATCATCACTCGCTAC
1 CAACCCACTAACGAAGTCCATCATCACTCGCTAC
47502605 CA
1 CA
47502607 TTTTCATAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.39, G:0.10, T:0.20
Consensus pattern (34 bp):
CAACCCACTAACGAAGTCCATCATCACTCGCTAC
Found at i:47506449 original size:25 final size:24
Alignment explanation
Indices: 47506378--47506460 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
47506368 CTGGAGGCCT
* *
47506378 AGCCTCTTTTAAT-AACTGCGGCAA
1 AGCC-CTTTTGATAAACTGAGGCAA
*
47506402 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGAGGCAA
*
47506426 AGCCCTTTTCGGTAAACTGAGGCAA
1 AGCCCTTTT-GATAAACTGAGGCAA
47506451 AGCCCTTTTG
1 AGCCCTTTTG
47506461 CACTTCCTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 7 0.13
24 24 0.45
25 22 0.42
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGAGGCAA
Found at i:47506518 original size:10 final size:10
Alignment explanation
Indices: 47506505--47506543 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
47506495 ATATATGAAT
47506505 ATATCATGGC
1 ATATCATGGC
47506515 ATATCATGTGC
1 ATATCATG-GC
47506526 ATATCATGGC
1 ATATCATGGC
47506536 ATATCATG
1 ATATCATG
47506544 TATAAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:47506531 original size:21 final size:21
Alignment explanation
Indices: 47506505--47506544 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
47506495 ATATATGAAT
47506505 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
47506526 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
47506545 ATAAAACAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:47513390 original size:33 final size:31
Alignment explanation
Indices: 47513305--47513390 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
47513295 AACCCTTCTT
*
47513305 GCATTAAATCCAACCAAAAACAACAAATATA
1 GCATAAAATCCAACCAAAAACAACAAATATA
* * * *
47513336 GCATGAAATCCAACCATAAACAGCAAATGTA
1 GCATAAAATCCAACCAAAAACAACAAATATA
* *
47513367 GTATAAAAAATACAACCAAAAACA
1 GCAT--AAAATCCAACCAAAAACA
47513391 TTAAATCTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
31 30 0.67
33 15 0.33
ACGTcount: A:0.57, C:0.21, G:0.07, T:0.15
Consensus pattern (31 bp):
GCATAAAATCCAACCAAAAACAACAAATATA
Found at i:47513647 original size:21 final size:21
Alignment explanation
Indices: 47513623--47513684 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
47513613 TCTGCTACCA
*
47513623 TCGCTGCTGCCTCTACCTCCT
1 TCGCTGCTGCCGCTACCTCCT
* *
47513644 TCGCTGTTGCCGCTACCTCTT
1 TCGCTGCTGCCGCTACCTCCT
* *
47513665 TCACTGCTGTCGCTACCTCC
1 TCGCTGCTGCCGCTACCTCC
47513685 CTCTCTGGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.06, C:0.44, G:0.16, T:0.34
Consensus pattern (21 bp):
TCGCTGCTGCCGCTACCTCCT
Found at i:47514135 original size:13 final size:14
Alignment explanation
Indices: 47514109--47514137 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
47514099 ACTAACGAAG
47514109 AATTAAACCATTAT
1 AATTAAACCATTAT
47514123 AATTAAA-CATTAT
1 AATTAAACCATTAT
47514136 AA
1 AA
47514138 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:47519345 original size:9 final size:9
Alignment explanation
Indices: 47519265--47519473 Score: 116
Period size: 9 Copynumber: 24.1 Consensus size: 9
47519255 TATGTATTAC
*
47519265 GTAAGTTAA
1 GTAAGTTAT
47519274 GTAAGGTT-T
1 GTAA-GTTAT
47519283 GTAAGTTAT
1 GTAAGTTAT
47519292 GTAAGTTAT
1 GTAAGTTAT
* *
47519301 GATATGATAT
1 G-TAAGTTAT
* *
47519311 -AAATTTAT
1 GTAAGTTAT
*
47519319 GTAAGGTAT
1 GTAAGTTAT
47519328 GTAAGTTAT
1 GTAAGTTAT
*
47519337 GTAAATTAT
1 GTAAGTTAT
* **
47519346 GATATGAAAT
1 G-TAAGTTAT
* * *
47519356 AT-ATTTAC
1 GTAAGTTAT
*
47519364 GT-A-TTAC
1 GTAAGTTAT
47519371 GTAAGTTAT
1 GTAAGTTAT
47519380 GTAAGTTAT
1 GTAAGTTAT
* *
47519389 AT-ATTTAT
1 GTAAGTTAT
*
47519397 -TTA-TTAT
1 GTAAGTTAT
* *
47519404 TTAAGTTTT
1 GTAAGTTAT
47519413 GTAAGTTAT
1 GTAAGTTAT
47519422 GTAAGTTAT
1 GTAAGTTAT
* *
47519431 AT-ATTTAT
1 GTAAGTTAT
47519439 GT-A-TTAT
1 GTAAGTTAT
*
47519446 GTAAGTTTT
1 GTAAGTTAT
47519455 GTAAGTTAT
1 GTAAGTTAT
47519464 GTAAGTTAT
1 GTAAGTTAT
47519473 G
1 G
47519474 ATATGATATA
Statistics
Matches: 153, Mismatches: 35, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
7 17 0.11
8 27 0.18
9 96 0.63
10 13 0.08
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:47519391 original size:33 final size:33
Alignment explanation
Indices: 47519354--47519421 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
47519344 ATGATATGAA
47519354 ATATATTTACGTATTACGTAAGTTATGTAAGTT
1 ATATATTTACGTATTACGTAAGTTATGTAAGTT
** ** *
47519387 ATATATTTATTTATTATTTAAGTTTTGTAAGTT
1 ATATATTTACGTATTACGTAAGTTATGTAAGTT
47519420 AT
1 AT
47519422 GTAAGTTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (33 bp):
ATATATTTACGTATTACGTAAGTTATGTAAGTT
Found at i:47519425 original size:42 final size:43
Alignment explanation
Indices: 47519274--47519487 Score: 220
Period size: 42 Copynumber: 5.0 Consensus size: 43
47519264 CGTAAGTTAA
* * *
47519274 GTAAGGTTTGTAAGTTATGTAAGTTATGATATGATATAAATTTAT
1 GTAAGTTTTGTAAGTTATGTAAGTTATGATAT-TTATATA-TTAT
* * * ** *
47519319 GTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTAC
1 GTAAGTTTTGTAAGTTATGTAAGTTATGATAT-TTATATA-TTAT
** *
47519364 GT-A-TTACGTAAGTTATGTAAGTTAT-ATATTTATTTATTAT
1 GTAAGTTTTGTAAGTTATGTAAGTTATGATATTTATATATTAT
* *
47519404 TTAAGTTTTGTAAGTTATGTAAGTTAT-ATATTTATGTATTAT
1 GTAAGTTTTGTAAGTTATGTAAGTTATGATATTTATATATTAT
*
47519446 GTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATATATT
1 GTAAGTTTTGTAAGTTATGTAAGTTATGATAT-TTATATATT
47519488 TAACATTAAG
Statistics
Matches: 146, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
40 4 0.03
41 5 0.03
42 64 0.44
43 23 0.16
44 8 0.05
45 42 0.29
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.48
Consensus pattern (43 bp):
GTAAGTTTTGTAAGTTATGTAAGTTATGATATTTATATATTAT
Found at i:47523528 original size:15 final size:15
Alignment explanation
Indices: 47523505--47523536 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47523495 AAATAATAAT
47523505 TTATATATATTTATC
1 TTATATATATTTATC
*
47523520 TTATTTATATTTATC
1 TTATATATATTTATC
47523535 TT
1 TT
47523537 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:47524253 original size:21 final size:23
Alignment explanation
Indices: 47524219--47524262 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
47524209 TCTAAATTAA
47524219 CCATAGACATTAAACC-TAAAAT
1 CCATAGACATTAAACCTTAAAAT
*
47524241 CCATA-ACCTTAAACCTTAAAAT
1 CCATAGACATTAAACCTTAAAAT
47524263 AACATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (23 bp):
CCATAGACATTAAACCTTAAAAT
Found at i:47524601 original size:75 final size:75
Alignment explanation
Indices: 47524367--47524607 Score: 186
Period size: 75 Copynumber: 3.1 Consensus size: 75
47524357 TGAAGAAAAT
* * * *
47524367 GCCGCTAATGCCTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGAGGCGTTT
1 GCCGCTAATGCCTCTATAGCTCACCAAAAGACGTCGTCGTTTTGCTCAAAACTTTTGCGGCTTTT
47524432 TTAAACAACC
66 TTAAACAACC
* * ** * ** * * * *
47524442 GCCGCTAATGCTTCACCTATTGCTGCATTTATAAAAAAAT-GCCGCTAATT-CTCAATA-TATTG
1 GCCGCTAATGC--C-TCTATAGCT-CA-CCA-AAAGACGTCGTCG-T-TTTGCTCAAAACTTTTG
** *
47524504 CGGCGTTTTGCAGAA-AA-A
58 CGGC-TTTTTTA-AACAACC
*
47524522 GCCGCTAATGCCTCTATAGCTCACCAACAGACGTCGTCGTTTTGCTCAAAACTTTTGCGGCTTTT
1 GCCGCTAATGCCTCTATAGCTCACCAAAAGACGTCGTCGTTTTGCTCAAAACTTTTGCGGCTTTT
47524587 TTAAACAACC
66 TTAAACAACC
47524597 GCCGCTAATGC
1 GCCGCTAATGC
47524608 TTCACCTATT
Statistics
Matches: 119, Mismatches: 32, Indels: 30
0.66 0.18 0.17
Matches are distributed among these distances:
73 4 0.03
74 18 0.15
75 34 0.29
76 2 0.02
77 8 0.07
78 8 0.07
79 2 0.02
80 22 0.18
81 17 0.14
82 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (75 bp):
GCCGCTAATGCCTCTATAGCTCACCAAAAGACGTCGTCGTTTTGCTCAAAACTTTTGCGGCTTTT
TTAAACAACC
Found at i:47524774 original size:154 final size:154
Alignment explanation
Indices: 47524312--47524780 Score: 692
Period size: 155 Copynumber: 3.0 Consensus size: 154
47524302 CATTTTGCAA
47524312 CGTTT-TAATAAAAACGCCGCTAATTCTCGATATATTGCAGCGTTTTGAAGAAAATGCCGCTAAT
1 CGTTTATAA-AAAAA-GCCGCTAATTCTCGATATATTGCAGCGTTTTGAAGAAAATGCCGCTAAT
* *
47524376 GCCTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGAGGCGTTTTTAAACAAC
64 GCCTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGCGGCATTTTTAAACAAC
*
47524441 CGCCGCTAATGCTTCACCTATTGCTG
129 CGCCGCTAATGCTTCACCTATTGCGG
* * * * *
47524467 CATTTATAAAAAAATGCCGCTAATTCTCAATATATTGCGGCGTTTTGCAGAAAAAGCCGCTAATG
1 CGTTTATAAAAAAA-GCCGCTAATTCTCGATATATTGCAGCGTTTTGAAGAAAATGCCGCTAATG
* * *
47524532 CCTCTATAGCTCACCAACAGACGTCGTCGTTTTGCTCAAAACTTTTGCGGCTTTTTTAAACAACC
65 CCTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGCGGCATTTTTAAACAACC
47524597 GCCGCTAATGCTTCACCTATTGCGG
130 GCCGCTAATGCTTCACCTATTGCGG
* *
47524622 TGTTT-TAGAAAAAAGCCGCTAATTCTCGATATATTGCAGCGTTTTGTAGAAAATGCCGCTAATG
1 CGTTTATA-AAAAAAGCCGCTAATTCTCGATATATTGCAGCGTTTTGAAGAAAATGCCGCTAATG
* * * **
47524686 CCTCTATAGCTCACCAATGGACGGCGTCGTATTGCTCAACACTTTTGCGGCATTTTTGGACAACC
65 CCTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGCGGCATTTTTAAACAACC
* *
47524751 GCCGCTAATGCTTGA-TTATTTGCGG
130 GCCGCTAATGCTTCACCTA-TTGCGG
47524776 CGTTT
1 CGTTT
47524781 GTTACATAAG
Statistics
Matches: 283, Mismatches: 28, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
153 2 0.01
154 129 0.46
155 149 0.53
156 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (154 bp):
CGTTTATAAAAAAAGCCGCTAATTCTCGATATATTGCAGCGTTTTGAAGAAAATGCCGCTAATGC
CTCTATAGCTCACCAATAGACGTCGTCGTTTTGCTCAACACTTTTGCGGCATTTTTAAACAACCG
CCGCTAATGCTTCACCTATTGCGG
Found at i:47527205 original size:26 final size:26
Alignment explanation
Indices: 47527176--47527235 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
47527166 TCCCTTTGAA
* * *
47527176 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
47527202 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
47527230 CCATTC
1 TCATTC
47527236 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:47527221 original size:28 final size:28
Alignment explanation
Indices: 47527190--47527261 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
47527180 TCGATATTTT
*
47527190 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
47527218 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
47527246 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
47527262 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:47531417 original size:143 final size:143
Alignment explanation
Indices: 47531120--47531402 Score: 485
Period size: 143 Copynumber: 2.0 Consensus size: 143
47531110 CTCCTCCTCC
*
47531120 TCTCCATTCCACATCCTTAATTTATATAACATGCAACAAGTAACATTATCAATAATTTCACTATT
1 TCTCAATTCCACATCCTTAATTTATATAACATGCAACAAGTAACATTATCAATAATTTCACTATT
*
47531185 TACTTATGTATATTCAAAACTGTCCATTTGCGTCATAGTCACTAAATTATTTATATCTTAAGCTA
66 TACTTATGTATATTCAAAACTGTCCATTTGCGTCATAGTCACTAAATTATTTATATCTTAAGATA
* ***
47531250 CAGAACTCTCTCC
131 AAGAACTCTCAAA
*
47531263 TCTCCATTCCACATCCTTAATTTATATAACATGCAACAAGTAACATTATCAATAATTTCACTATT
1 TCTCAATTCCACATCCTTAATTTATATAACATGCAACAAGTAACATTATCAATAATTTCACTATT
47531328 TACTTATATGTATATTCAAAACTGTCCATTTGCGTCATAGTCACTAAATTATTTATATCTTAAGA
66 TAC-T-TATGTATATTCAAAACTGTCCATTTGCGTCATAGTCACTAAATTATTTATATCTTAAGA
47531393 TAAAGAACTC
129 TAAAGAACTC
47531403 GAAATTAATA
Statistics
Matches: 136, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
143 68 0.50
144 1 0.01
145 67 0.49
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (143 bp):
TCTCAATTCCACATCCTTAATTTATATAACATGCAACAAGTAACATTATCAATAATTTCACTATT
TACTTATGTATATTCAAAACTGTCCATTTGCGTCATAGTCACTAAATTATTTATATCTTAAGATA
AAGAACTCTCAAA
Found at i:47534070 original size:23 final size:23
Alignment explanation
Indices: 47534040--47534085 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
47534030 ATAAATAGAG
47534040 TTCATCTTTAGTTTCTAGGTGTT
1 TTCATCTTTAGTTTCTAGGTGTT
47534063 TTCATCTTTAGTTTCTAGGTGTT
1 TTCATCTTTAGTTTCTAGGTGTT
47534086 GAAAGTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.13, G:0.17, T:0.57
Consensus pattern (23 bp):
TTCATCTTTAGTTTCTAGGTGTT
Found at i:47549482 original size:47 final size:49
Alignment explanation
Indices: 47549413--47549633 Score: 158
Period size: 47 Copynumber: 4.7 Consensus size: 49
47549403 GTAAGGTGCC
* * * *
47549413 AATGCCATATCCTAGACATGGTCTTATACTGGCTTAT-ATCTC-AAGTT
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAAGCT
* *
47549460 AATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCT
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAAGCT
* * * ** *
47549508 GATG-CATGTCCCAGACAT-GTCTTGCACTGGCTTA-CGTCTCGGGGCC
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAAGCT
** * * * * * *
47549554 GTTG-CATGTCCTAAACAT-GTTTTACACTAGCCT-TCGTCTC-AATG-T
1 AATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAA-GCT
*
47549599 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 -AATGCCATGTCCCAGACATGGTCTTACACTGGCT
47549634 CTCATAATGT
Statistics
Matches: 137, Mismatches: 29, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
46 58 0.42
47 62 0.45
48 17 0.12
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (49 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAAGCT
Found at i:47549548 original size:46 final size:45
Alignment explanation
Indices: 47549465--47549675 Score: 183
Period size: 46 Copynumber: 4.5 Consensus size: 45
47549455 AAGTTAATGC
* *
47549465 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCGTAGCCGATG
* * ** *
47549512 CATGTCCCAGACATGTCTTGCACTGGCTTACGTCTCGGGGCCGTTG
1 CATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGTAGCCGATG
* * * * * * *
47549558 CATGTCCTAAACATGTTTTACACTAGCCTTCGTCTC-AATGTCGATG
1 CATGTCCCAGACATGTCTTACACT-GGCTTCATCTCGTA-GCCGATG
* *
47549604 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGTAGCCGATG
47549652 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
47549676 AGCTCACACA
Statistics
Matches: 131, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 64 0.49
47 47 0.36
48 18 0.14
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTCATCTCGTAGCCGATG
Found at i:47549657 original size:94 final size:92
Alignment explanation
Indices: 47549508--47549678 Score: 220
Period size: 94 Copynumber: 1.8 Consensus size: 92
47549498 TCTCGTAGCT
* * * * *
47549508 GATGCATGTCCCAGACATGTCTTGCACTGGCTTACGTCTCGGGGCCGTTGCATGTCCTAAACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGGGGCCGATGCATGTCCCAAACATG
*
47549573 TTTTACACTAGCCTTCGTCTCAATGTC
66 TCTTACACTAGCCTTCGTCTCAATGTC
* *
47549600 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGGGGCCGATGCATGTCCCAAA
47549663 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
47549679 TCACACACGA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.21
94 47 0.70
95 2 0.03
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGGGGCCGATGCATGTCCCAAACATG
TCTTACACTAGCCTTCGTCTCAATGTC
Found at i:47551628 original size:14 final size:14
Alignment explanation
Indices: 47551587--47551629 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
47551577 TGTTAATATA
* *
47551587 AAATACATATGATG
1 AAATTCATATAATG
*
47551601 AAATTTATTATAATG
1 AAATTCA-TATAATG
47551616 AAATTCATATAATG
1 AAATTCATATAATG
47551630 TATCACAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (14 bp):
AAATTCATATAATG
Found at i:47551648 original size:21 final size:21
Alignment explanation
Indices: 47551622--47551662 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
47551612 AATGAAATTC
* *
47551622 ATATAATGTATCACAATTAGT
1 ATATAACGAATCACAATTAGT
*
47551643 ATATAACGAATCATAATTAG
1 ATATAACGAATCACAATTAG
47551663 AATAAAATAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (21 bp):
ATATAACGAATCACAATTAGT
Found at i:47555946 original size:63 final size:64
Alignment explanation
Indices: 47555839--47555968 Score: 192
Period size: 63 Copynumber: 2.0 Consensus size: 64
47555829 ATAGAAATGG
* * *
47555839 TGAAAATAAAGAAATGAGAAACATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAATGAAAA
1 TGAAAATAAAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
* *
47555903 TGAAAATAGAGAAAT-A-AAATCATTTGAAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAA
1 TGAAAATAAAGAAATGAGAAA-CATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
47555966 TGA
1 TGA
47555969 CTTGGAAATG
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
62 3 0.05
63 43 0.72
64 14 0.23
ACGTcount: A:0.51, C:0.06, G:0.16, T:0.27
Consensus pattern (64 bp):
TGAAAATAAAGAAATGAGAAACATTTGAAAATGAATATGATTTTCTCCAAAATGAAAATGAAAA
Found at i:47569256 original size:43 final size:42
Alignment explanation
Indices: 47569186--47569350 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 42
47569176 CAATGCCAAC
* *
47569186 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCA-T
* * *
47569229 GTCCCAGACAG-GGTCTTACACAAAATCAAATA-CGATACTGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGC-CAT
* * * *
47569271 GTCCCAGTCATGGTCTTACACGTAAATCTCAA-ATCGATGCTAAT
1 GTCCCAGACGTGGTCTTACACG-AAATC-AAATATCGATGC-CAT
* * *
47569315 GTCCTAGACGTGGTCTGACACGAAATCACATATCGA
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGA
47569351 AAATCCTATG
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
42 25 0.26
43 44 0.45
44 29 0.30
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAT
Found at i:47569330 original size:86 final size:85
Alignment explanation
Indices: 47569186--47569342 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 85
47569176 CAATGCCAAC
* * * *
47569186 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTGACACA
47569251 AAATCAAATACGATACTGAT
66 AAATCAAATACGATACTGAT
* * * *
47569271 GTCCCAGTCATGGTCTTACACGTAAATCTCAA-ATCGATGCTAATGTCCTAGAC-GTGGTCTGAC
1 GTCCCAGACATGGTCTTACACGT-AATC-AAATATCGATGCCAATGTCCCAGACAG-GGTCTGAC
*
47569334 ACGAAATCA
63 ACAAAATCA
47569343 CATATCGAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
85 21 0.35
86 37 0.62
87 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTCTGACACA
AAATCAAATACGATACTGAT
Found at i:47571434 original size:30 final size:30
Alignment explanation
Indices: 47571400--47571461 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
47571390 GCTAAACCTT
*
47571400 TTATAGATAGATTAAATAGCTTGATCAAAG
1 TTATAGATAGATTAAATAGCTTGACCAAAG
47571430 TTATAGATAGATTAAATAGCTTGACCAAAG
1 TTATAGATAGATTAAATAGCTTGACCAAAG
47571460 TT
1 TT
47571462 TTATTTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (30 bp):
TTATAGATAGATTAAATAGCTTGACCAAAG
Found at i:47573432 original size:18 final size:18
Alignment explanation
Indices: 47573387--47573439 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
47573377 GGCCTTGGCC
*
47573387 CATTGCAGTAACAATAAA
1 CATTGCAGTAACAGTAAA
* ** *
47573405 CAGTATAGTAACAGTAAT
1 CATTGCAGTAACAGTAAA
47573423 CATTGCAGTAACAGTAA
1 CATTGCAGTAACAGTAA
47573440 GCAGTATGCA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (18 bp):
CATTGCAGTAACAGTAAA
Found at i:47573808 original size:27 final size:27
Alignment explanation
Indices: 47573769--47573982 Score: 202
Period size: 27 Copynumber: 8.0 Consensus size: 27
47573759 ACATACATCC
* *
47573769 CATAGGGGCAAAACAGTCATCTTACCA
1 CATAAGGGCAAAACAGTCATTTTACCA
* * *
47573796 CAAAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCA
47573823 CATAAGGGCAAAACCA-TC-TTTTACCA
1 CATAAGGGCAAAA-CAGTCATTTTACCA
* * *
47573849 CATAAAGGCAAAACCGTCATTTTAACA
1 CATAAGGGCAAAACAGTCATTTTACCA
* * *
47573876 CATAAGGG-AAAATTAGTTATTTTTCCA
1 CATAAGGGCAAAA-CAGTCATTTTACCA
* * *
47573903 CATAAGGGCAAAACTGTTATTTTATCA
1 CATAAGGGCAAAACAGTCATTTTACCA
* * * *
47573930 CATAAGAGAAAAATC-GTCATTTTAACT
1 CATAAGGGCAAAA-CAGTCATTTTACCA
*
47573957 CATAAGGGCAAAACAATCATTTTACC
1 CATAAGGGCAAAACAGTCATTTTACC
47573983 TTACAGGGGT
Statistics
Matches: 150, Mismatches: 30, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 26 0.17
27 117 0.78
28 6 0.04
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCA
Found at i:47573908 original size:80 final size:80
Alignment explanation
Indices: 47573775--47573982 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
47573765 ATCCCATAGG
* * * * *
47573775 GGCAAAACAGTCATCTTACCACAAAAGGGCAAAATAGTCATTTTACCTCATAAGGGCAAAAC-CA
1 GGCAAAACCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACTCA
*
47573839 TCTTTTACCACATAAA
66 TATTTTACCACAT-AA
* * *
47573855 GGCAAAACCGTCATTTTAACACATAAGGG-AAAATTAGTTATTTTTCCACATAAGGGCAAAACTG
1 GGCAAAACCGTCATTTTAACACATAAGGGCAAAA-TAGTCATTTTACCACATAAGGGCAAAACTC
* *
47573919 TTATTTTATCACATAA
65 ATATTTTACCACATAA
* * * * *
47573935 GAGAAAAATCGTCATTTTAACTCATAAGGGCAAAACAATCATTTTACC
1 G-GCAAAACCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACC
47573983 TTACAGGGGT
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.04
80 53 0.50
81 45 0.42
82 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (80 bp):
GGCAAAACCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAACTCA
TATTTTACCACATAA
Done.