Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 141 of 290
Found at i:47933237 original size:26 final size:26
Alignment explanation
Indices: 47933165--47933240 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
47933155 ACTTTTAACT
* *
47933165 GAGATAGTCATAAAGGAATCCTTTCA
1 GAGATAGCCATAAAGGAGTCCTTTCA
* *
47933191 GAGATAGCCACAAAGGCGTCCTTTCA
1 GAGATAGCCATAAAGGAGTCCTTTCA
* *
47933217 GAGTTAGCCATAAAGGTGTCCTTT
1 GAGATAGCCATAAAGGAGTCCTTT
47933241 TATGGAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
GAGATAGCCATAAAGGAGTCCTTTCA
Found at i:47936406 original size:16 final size:17
Alignment explanation
Indices: 47936385--47936419 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
47936375 TGCAACTACT
47936385 ATAAAA-CAATCTAATA
1 ATAAAACCAATCTAATA
47936401 ATAAAACCAATCTAATA
1 ATAAAACCAATCTAATA
47936418 AT
1 AT
47936420 GACATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAACCAATCTAATA
Found at i:47936893 original size:29 final size:29
Alignment explanation
Indices: 47936847--47936965 Score: 87
Period size: 29 Copynumber: 4.1 Consensus size: 29
47936837 GTACTCCCTA
* *
47936847 TTATAAGGAACCCCTTGTGGCAATTTCTG
1 TTATAAGGAAACCTTTGTGGCAATTTCTG
* * *
47936876 TTATAAGGAAATCTTTGTAGCTATATT-TG
1 TTATAAGGAAACCTTTGTGGCAAT-TTCTG
* * * * *
47936905 TTATAAAGAAGCCTTTGTGGCGATCTCTA
1 TTATAAGGAAACCTTTGTGGCAATTTCTG
* * * * *
47936934 CTATAAGGAAGCCTTTATGGAAATCTCTG
1 TTATAAGGAAACCTTTGTGGCAATTTCTG
47936963 TTA
1 TTA
47936966 AAAAGGATGC
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
28 1 0.01
29 66 0.96
30 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (29 bp):
TTATAAGGAAACCTTTGTGGCAATTTCTG
Found at i:47937025 original size:29 final size:29
Alignment explanation
Indices: 47936915--47937117 Score: 142
Period size: 29 Copynumber: 7.0 Consensus size: 29
47936905 TTATAAAGAA
* * * *
47936915 GCCTTTGTGGCGATCTCTA-CTATAAGGAA
1 GCCTTTGTGGCAATCTC-AGTTAAAAGGAT
* * *
47936944 GCCTTTATGGAAATCTCTGTTAAAAAGGAT
1 GCCTTTGTGGCAATCTCAGTT-AAAAGGAT
* * * * * *
47936974 GCCTTTATGGCTACCTTTA-TTAAATGAAT
1 GCCTTTGTGGCAATC-TCAGTTAAAAGGAT
* *
47937003 TCCTTTGTGGCAATCTCTGTTAAAAGGAT
1 GCCTTTGTGGCAATCTCAGTTAAAAGGAT
* * *
47937032 GCATTTATGG-ATATCTCAATTAAAAGGAT
1 GCCTTTGTGGCA-ATCTCAGTTAAAAGGAT
*
47937061 GCCTTTGTGGCAATCTCAGTTAAATGGAT
1 GCCTTTGTGGCAATCTCAGTTAAAAGGAT
* * **
47937090 GCCCTTGTGGCTATCTTTGTTAAAAGGA
1 GCCTTTGTGGCAATCTCAGTTAAAAGGA
47937118 CACCTACGTG
Statistics
Matches: 132, Mismatches: 36, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
28 2 0.02
29 108 0.82
30 21 0.16
31 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (29 bp):
GCCTTTGTGGCAATCTCAGTTAAAAGGAT
Found at i:47937105 original size:58 final size:58
Alignment explanation
Indices: 47936915--47937117 Score: 208
Period size: 58 Copynumber: 3.5 Consensus size: 58
47936905 TTATAAAGAA
* * * * * * *
47936915 GCCTTTGTGGCGATCTCTACTATAAGGAAGCCTTTATGGAAATCTCTGTTAAAAAGGAT
1 GCCTTTATGGCTATCTCTATTAAAAGGATGCCTTTGTGGCAATCTCTGTT-AAAAGGAT
* * * * *
47936974 GCCTTTATGGCTACCTTTATTAAATGAATTCCTTTGTGGCAATCTCTGTTAAAAGGAT
1 GCCTTTATGGCTATCTCTATTAAAAGGATGCCTTTGTGGCAATCTCTGTTAAAAGGAT
* * * * *
47937032 GCATTTATGGATATCTCAATTAAAAGGATGCCTTTGTGGCAATCTCAGTTAAATGGAT
1 GCCTTTATGGCTATCTCTATTAAAAGGATGCCTTTGTGGCAATCTCTGTTAAAAGGAT
* * * *
47937090 GCCCTTGTGGCTATCTTTGTTAAAAGGA
1 GCCTTTATGGCTATCTCTATTAAAAGGA
47937118 CACCTACGTG
Statistics
Matches: 115, Mismatches: 29, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
58 77 0.67
59 38 0.33
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (58 bp):
GCCTTTATGGCTATCTCTATTAAAAGGATGCCTTTGTGGCAATCTCTGTTAAAAGGAT
Found at i:47937111 original size:87 final size:88
Alignment explanation
Indices: 47936919--47937117 Score: 213
Period size: 87 Copynumber: 2.3 Consensus size: 88
47936909 AAAGAAGCCT
* ** * * **
47936919 TTGTGGCGATCTCTACTATAAGGAAGCCTTTATGGAAATCTCTGTTAAAAAGGATGCCTTTATGG
1 TTGTGGCAATCTCTGTTAAAAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGG
* * * *
47936984 CTACCTTTATTAAATGAATTCCT
66 CAACCTTCATTAAATGAATGCCC
* * *
47937007 TTGTGGCAATCTCTGTTAAAAGGATGCATTTATGGATATCTCAATT-AAAAGGATGCCTTTGTGG
1 TTGTGGCAATCTCTGTTAAAAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGG
* *
47937071 CAATC-TCAGTTAAATGGATGCCC
66 CAACCTTCA-TTAAATGAATGCCC
* *
47937094 TTGTGGCTATCTTTGTTAAAAGGA
1 TTGTGGCAATCTCTGTTAAAAGGA
47937118 CACCTACGTG
Statistics
Matches: 92, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
86 2 0.02
87 53 0.58
88 37 0.40
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (88 bp):
TTGTGGCAATCTCTGTTAAAAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGG
CAACCTTCATTAAATGAATGCCC
Found at i:47938294 original size:51 final size:51
Alignment explanation
Indices: 47938239--47938336 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
47938229 GCTACGTACT
* * * *
47938239 TACCAAATTGTCATAGCCTTTTTCATTTATAGTCTTACGCCATATACCTTA
1 TACCAAACTATCATAGCCTCTTTCATCTATAGTCTTACGCCATATACCTTA
* *
47938290 TACCAAACTATCATAGCCTCTTTCATCTATGGTCTTATGCCATATAC
1 TACCAAACTATCATAGCCTCTTTCATCTATAGTCTTACGCCATATAC
47938337 TGTCGCCACG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.39
Consensus pattern (51 bp):
TACCAAACTATCATAGCCTCTTTCATCTATAGTCTTACGCCATATACCTTA
Found at i:47945931 original size:11 final size:11
Alignment explanation
Indices: 47945917--47945942 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47945907 AAAGAGAATT
47945917 GAAAAAAAAAA
1 GAAAAAAAAAA
47945928 GAAAAAAAAAA
1 GAAAAAAAAAA
47945939 GAAA
1 GAAA
47945943 GTTAAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:47953975 original size:37 final size:37
Alignment explanation
Indices: 47953925--47954003 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
47953915 TTATTACGAA
* * *
47953925 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
47953962 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
47953999 GTCTT
1 GTCTT
47954004 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:47954200 original size:47 final size:47
Alignment explanation
Indices: 47954122--47954469 Score: 624
Period size: 47 Copynumber: 7.4 Consensus size: 47
47954112 CCCTTCGGGA
* * * * * *
47954122 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47954169 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954310 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954404 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47954451 CTTATCACATATATACACT
1 CTTATCACATATATACACT
47954470 GTCTTGGCTG
Statistics
Matches: 291, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 291 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47983232 original size:13 final size:14
Alignment explanation
Indices: 47983209--47983254 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
47983199 ATAGTAGTTT
47983209 TTTCAAAAAAAAAA
1 TTTCAAAAAAAAAA
47983223 TTTCAAAAAAAAAAA
1 TTTC-AAAAAAAAAA
**
47983238 AATCAAAAAAAAAA
1 TTTCAAAAAAAAAA
47983252 TTT
1 TTT
47983255 GGTTTCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (14 bp):
TTTCAAAAAAAAAA
Found at i:47983233 original size:15 final size:15
Alignment explanation
Indices: 47983209--47983251 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
47983199 ATAGTAGTTT
47983209 TTTC-AAAAAAAAAA
1 TTTCAAAAAAAAAAA
47983223 TTTCAAAAAAAAAAA
1 TTTCAAAAAAAAAAA
**
47983238 AATCAAAAAAAAAA
1 TTTCAAAAAAAAAA
47983252 TTTGGTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (15 bp):
TTTCAAAAAAAAAAA
Found at i:47983314 original size:16 final size:16
Alignment explanation
Indices: 47983293--47983348 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
47983283 TATCAAGTTG
47983293 AAAAAAAAATTCGTGA
1 AAAAAAAAATTCGTGA
*
47983309 AAAAAAAAATTCATGA
1 AAAAAAAAATTCGTGA
47983325 AAAAAAAAATTTTCGTGA
1 AAAAAAAAA--TTCGTGA
47983343 AAAAAA
1 AAAAAA
47983349 GAAGAATAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 24 0.67
18 12 0.33
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (16 bp):
AAAAAAAAATTCGTGA
Found at i:47983316 original size:18 final size:18
Alignment explanation
Indices: 47983293--47983348 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
47983283 TATCAAGTTG
47983293 AAAAAAAAATTCGTG--A
1 AAAAAAAAATTCGTGAAA
*
47983309 AAAAAAAAATTCATGAAA
1 AAAAAAAAATTCGTGAAA
**
47983327 AAAAAAATTTTCGTGAAA
1 AAAAAAAAATTCGTGAAA
47983345 AAAA
1 AAAA
47983349 GAAGAATAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 14 0.41
18 20 0.59
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (18 bp):
AAAAAAAAATTCGTGAAA
Found at i:47991458 original size:3 final size:3
Alignment explanation
Indices: 47991445--47991499 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
47991435 TTGTCGTTTT
* * * **
47991445 TTA TATA TTA TTA TCA TCA TTC TTA TTA TTA TTA TTA TTA TTA CCA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
47991491 TTA TTA TTA
1 TTA TTA TTA
47991500 CTACAACTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:47993965 original size:15 final size:15
Alignment explanation
Indices: 47993942--47993980 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
47993932 ATTGACAATG
*
47993942 TTCTTAGTAGATTCT
1 TTCTCAGTAGATTCT
*
47993957 TTCTCAGTAGCTTCT
1 TTCTCAGTAGATTCT
*
47993972 TTTTCAGTA
1 TTCTCAGTA
47993981 TTGTCTTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (15 bp):
TTCTCAGTAGATTCT
Found at i:47995149 original size:18 final size:19
Alignment explanation
Indices: 47995104--47995154 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
47995094 ATACATCTGA
47995104 ATGCACATATATACTTATC
1 ATGCACATATATACTTATC
**
47995123 ATGTGCATATA-A-TTGATC
1 ATGCACATATATACTT-ATC
47995141 ATGCACATATATAC
1 ATGCACATATATAC
47995155 CAATCACATT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 13 0.52
19 10 0.40
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (19 bp):
ATGCACATATATACTTATC
Found at i:48001059 original size:21 final size:21
Alignment explanation
Indices: 48001035--48001078 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
48001025 TGTGGCTGTG
*
48001035 TCTGATTTTGGTGTGGATGCA
1 TCTGACTTTGGTGTGGATGCA
*
48001056 TCTGACTTTGTTGTGGATGCA
1 TCTGACTTTGGTGTGGATGCA
48001077 TC
1 TC
48001079 CGAGTGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.30, T:0.43
Consensus pattern (21 bp):
TCTGACTTTGGTGTGGATGCA
Found at i:48002515 original size:17 final size:16
Alignment explanation
Indices: 48002484--48002517 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
48002474 AAATATTATG
48002484 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
48002500 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
48002517 A
1 A
48002518 TGCAATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:48010968 original size:21 final size:21
Alignment explanation
Indices: 48010927--48010968 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
48010917 TTTCGATTCG
**
48010927 ATCCAATATTTCTTTTATATT
1 ATCCAATATTTCAGTTATATT
48010948 ATCCAAGTATTTCAGTT-TATT
1 ATCCAA-TATTTCAGTTATATT
48010969 TGCCTTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (21 bp):
ATCCAATATTTCAGTTATATT
Found at i:48023531 original size:15 final size:16
Alignment explanation
Indices: 48023513--48023545 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
48023503 TATTTCACTA
48023513 TTATGTCTTTC-ATAT
1 TTATGTCTTTCTATAT
48023528 TTATGTCTTTCTATAT
1 TTATGTCTTTCTATAT
48023544 TT
1 TT
48023546 TGCATGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (16 bp):
TTATGTCTTTCTATAT
Found at i:48025905 original size:39 final size:40
Alignment explanation
Indices: 48025754--48025923 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
48025744 GGACTAAGAT
* * *
48025754 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
48025794 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
48025834 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
48025874 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
48025913 CCGAAGGCATT
1 CCGAAGGCATT
48025924 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:48025943 original size:79 final size:80
Alignment explanation
Indices: 48025776--48025958 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
48025766 GTGCGAGATA
* * * *
48025776 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
48025841 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
48025856 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
48025920 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
48025935 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
48025959 TATGTGAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:48030956 original size:74 final size:74
Alignment explanation
Indices: 48030835--48030980 Score: 256
Period size: 74 Copynumber: 2.0 Consensus size: 74
48030825 CCCATTGTAG
***
48030835 CCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTTGGTTTTGGTGGC
1 CCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAATTTTGGTGGC
48030900 ATGGTATAA
66 ATGGTATAA
*
48030909 CCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAATGATTTGAAACGTCAATTTTGGTGGC
1 CCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAATTTTGGTGGC
48030974 ATGGTAT
66 ATGGTAT
48030981 GAAATGGGAC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (74 bp):
CCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAATTTTGGTGGC
ATGGTATAA
Found at i:48031524 original size:101 final size:101
Alignment explanation
Indices: 48031349--48031551 Score: 379
Period size: 101 Copynumber: 2.0 Consensus size: 101
48031339 GAAGCTCTGG
48031349 GTACCAAGCTGCATTTTAGCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGAGGATAATT
1 GTACCAAGCTGCATTTTAGCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGAGGATAATT
48031414 CAGATACTTGAGGATATGTTGAGATGTTGCATCCTC
66 CAGATACTTGAGGATATGTTGAGATGTTGCATCCTC
* *
48031450 GTACCAAGCTGCATTTTAGCACTGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAATT
1 GTACCAAGCTGCATTTTAGCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGAGGATAATT
*
48031515 TAGATACTTGAGGATATGTTGAGATGTTGCATCCTC
66 CAGATACTTGAGGATATGTTGAGATGTTGCATCCTC
48031551 G
1 G
48031552 AGTTCAGTAG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (101 bp):
GTACCAAGCTGCATTTTAGCACTACTTTTCACCCCCAAACCGATGGTCAATCCGAGAGGATAATT
CAGATACTTGAGGATATGTTGAGATGTTGCATCCTC
Found at i:48033873 original size:40 final size:39
Alignment explanation
Indices: 48033842--48034051 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
48033832 GGACTAAGAT
* *
48033842 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
48033882 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
48033922 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
48033962 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
48034002 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
48034041 CCGAAGGCATT
1 CCGAAGGCATT
48034052 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:48034005 original size:120 final size:120
Alignment explanation
Indices: 48033789--48034051 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
48033779 TTGAATGCTG
* *
48033789 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
48033853 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
48033909 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
48033972 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
48034028 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48034052 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:48034071 original size:79 final size:80
Alignment explanation
Indices: 48033790--48034059 Score: 217
Period size: 80 Copynumber: 3.4 Consensus size: 80
48033780 TGAATGCTGT
* ** * * * **
48033790 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
48033853 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
48033870 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
48033934 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
48033950 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
48034014 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* *
48034029 CCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG
48034060 GAGCTATATC
Statistics
Matches: 162, Mismatches: 23, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
79 41 0.25
80 110 0.68
81 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:48035025 original size:37 final size:36
Alignment explanation
Indices: 48034949--48035025 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
48034939 ATTCCAAAAA
* *
48034949 TAATATTATTTTAATAGTTTAATATTAAATTTAGTT
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
*
48034985 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAAT-T
48035022 TAAT
1 TAAT
48035026 GTGATTATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
36 12 0.34
37 21 0.60
38 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:48046879 original size:27 final size:27
Alignment explanation
Indices: 48046840--48047017 Score: 223
Period size: 27 Copynumber: 6.6 Consensus size: 27
48046830 ATATTGAGTC
* * *
48046840 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48046867 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48046894 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** *
48046922 CGCACACTTAGTGCCGCATGGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48046949 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48046976 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48047003 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48047018 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 106 0.81
28 25 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48046979 original size:82 final size:81
Alignment explanation
Indices: 48046861--48047016 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48046851 TGCTACATAA
* * *
48046861 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAAATCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48046926 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* **
48046943 TCAAATCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAAATCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48047007 CACTTAGTGC
65 CACTTAGTGC
48047017 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAAATCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48055027 original size:27 final size:27
Alignment explanation
Indices: 48054997--48055174 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48054987 ATATTGAGTC
* * * *
48054997 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48055024 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48055051 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48055079 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48055106 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48055133 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48055160 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48055175 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48055136 original size:82 final size:81
Alignment explanation
Indices: 48055018--48055173 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48055008 TGCTATATAA
* *
48055018 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48055083 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48055100 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48055164 CACTTAGTGC
65 CACTTAGTGC
48055174 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48057212 original size:27 final size:27
Alignment explanation
Indices: 48057190--48057419 Score: 271
Period size: 27 Copynumber: 8.5 Consensus size: 27
48057180 AGGGGTAAAA
* *
48057190 CAGTCATTTTATCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
48057217 CGGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
48057244 GAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** *
48057271 TGGTCATTTTTACCCAATGGGGGTATTT
1 CAGTCA-TTTTACCCTATGGGGGTATTT
* *
48057299 CGGTCATTTTACCCTATGGGGTTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * * *
48057326 CAATCATTTTACCTTATAGAGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48057353 CGGTCATTTTACCCTATAGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* **
48057380 CGGTCATTTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
**
48057407 TGGTCATTTTACC
1 CAGTCATTTTACC
48057420 TATTTTAGGG
Statistics
Matches: 179, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 154 0.86
28 25 0.14
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGGGGGTATTT
Found at i:48057307 original size:82 final size:81
Alignment explanation
Indices: 48057192--48057419 Score: 314
Period size: 82 Copynumber: 2.8 Consensus size: 81
48057182 GGGTAAAACA
* *
48057192 GTCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
* * *
48057257 CTATGGGGGTATTTTG
66 CTATAGAGGTATTTCG
* * * *
48057273 GTCATTTTTACCCAATGGGGGTATTTCGGTCATTTTACCCTATGGGGTTATTTCAATCATTTTAC
1 GTCA-TTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTAC
*
48057338 CTTATAGAGGTATTTCG
65 CCTATAGAGGTATTTCG
* **
48057355 GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTTG-GTCATTTTAC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTA-TTTGAGTCATTTTAC
48057419 C
65 C
48057420 TATTTTAGGG
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 54 0.42
82 74 0.58
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
CTATAGAGGTATTTCG
Found at i:48068364 original size:163 final size:163
Alignment explanation
Indices: 48068094--48068418 Score: 632
Period size: 163 Copynumber: 2.0 Consensus size: 163
48068084 ACATCCATAT
48068094 AGCCGAATTTGGACATCACTTTTAATGGATACATTTCTAGTTTAGTTTTACACATTTAAAGCCAA
1 AGCCGAATTTGGACATCACTTTTAATGGATACATTTCTAGTTTAGTTTTACACATTTAAAGCCAA
48068159 ATTACTTAGTCTTTAAGCTTGTTTAGTATGACTATTCGGCTATCATCTGAACTCTATAAATAGTT
66 ATTACTTAGTCTTTAAGCTTGTTTAGTATGACTATTCGGCTATCATCTGAACTCTATAAATAGTT
48068224 CATTTCTCTTTGTAAAAAGGTTAGACATTTCTC
131 CATTTCTCTTTGTAAAAAGGTTAGACATTTCTC
*
48068257 AGCCGAATTTGGACATCACTTTTAATGGATACATTTCTAGTTTAGTTTTACACATTTAAAGCTAA
1 AGCCGAATTTGGACATCACTTTTAATGGATACATTTCTAGTTTAGTTTTACACATTTAAAGCCAA
*
48068322 ATTACTTAGTCTTTAAGCTTGTTTAGTATGACTATTCGGCTATCATTTGAACTCTATAAATAGTT
66 ATTACTTAGTCTTTAAGCTTGTTTAGTATGACTATTCGGCTATCATCTGAACTCTATAAATAGTT
48068387 CATTTCTCTTTGTAAAAAGGTTAGACATTTCT
131 CATTTCTCTTTGTAAAAAGGTTAGACATTTCT
48068419 GATTATTAAA
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
163 160 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (163 bp):
AGCCGAATTTGGACATCACTTTTAATGGATACATTTCTAGTTTAGTTTTACACATTTAAAGCCAA
ATTACTTAGTCTTTAAGCTTGTTTAGTATGACTATTCGGCTATCATCTGAACTCTATAAATAGTT
CATTTCTCTTTGTAAAAAGGTTAGACATTTCTC
Found at i:48071897 original size:25 final size:25
Alignment explanation
Indices: 48071869--48071916 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
48071859 TGTAGCTACG
*
48071869 TTCTGAC-CTACAACTCGTGTGAGCA
1 TTCTGACTC-ACAACTCATGTGAGCA
*
48071894 TTCTGATTCACAACTCATGTGAG
1 TTCTGACTCACAACTCATGTGAG
48071917 TATTTCGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (25 bp):
TTCTGACTCACAACTCATGTGAGCA
Found at i:48071926 original size:25 final size:25
Alignment explanation
Indices: 48071878--48071942 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
48071868 GTTCTGACCT
*
48071878 ACAACTCGTGTGAGCATTCTGATTC
1 ACAACTCATGTGAGCATTCTGATTC
*
48071903 ACAACTCATGTGAGTATT-TCGATTC
1 ACAACTCATGTGAGCATTCT-GATTC
*
48071928 ACAGCT--TGTGAGCAT
1 ACAACTCATGTGAGCAT
48071943 ACATATATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 8 0.23
24 1 0.03
25 26 0.74
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (25 bp):
ACAACTCATGTGAGCATTCTGATTC
Found at i:48077205 original size:27 final size:27
Alignment explanation
Indices: 48077174--48077351 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48077164 TAAATTGTAC
48077174 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48077201 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48077227 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
48077255 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48077283 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48077310 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
48077337 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48077352 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48077288 original size:82 final size:81
Alignment explanation
Indices: 48077175--48077330 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48077165 AAATTGTACA
* *
48077175 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
48077239 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
48077256 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
48077321 TGCGAGTTGA
65 TGCGAATTGA
48077331 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48077342 original size:82 final size:81
Alignment explanation
Indices: 48077171--48077351 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48077161 GATTAAATTG
* *
48077171 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48077236 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
48077252 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
48077316 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48077334 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48077352 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48079042 original size:32 final size:32
Alignment explanation
Indices: 48079006--48079071 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
48078996 ATACTATAAG
*
48079006 ACATAATTTTTTCTTATCGTATTTTTATTCAT
1 ACATAATTTTTTCTTATAGTATTTTTATTCAT
48079038 ACATAATTTTTTCTTATAGTATTTTTATTCAT
1 ACATAATTTTTTCTTATAGTATTTTTATTCAT
48079070 AC
1 AC
48079072 CGTCTGGCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (32 bp):
ACATAATTTTTTCTTATAGTATTTTTATTCAT
Found at i:48080379 original size:87 final size:87
Alignment explanation
Indices: 48080233--48080531 Score: 582
Period size: 87 Copynumber: 3.4 Consensus size: 87
48080223 AAAAGAAAGG
48080233 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
1 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
48080298 AATTCATCAGATCTGTCAAGCT
66 AATTCATCAGATCTGTCAAGCT
48080320 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
1 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
48080385 AATTCATCAGATCTGTCAAGCT
66 AATTCATCAGATCTGTCAAGCT
48080407 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
1 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
48080472 AATTCATCAGATCTGTCAAGCT
66 AATTCATCAGATCTGTCAAGCT
*
48080494 AAAAATATAAGAATTCAAGAGAATACCAA-CTTCAAACA
1 AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACA
48080532 TGATAGTTTA
Statistics
Matches: 211, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
86 8 0.04
87 203 0.96
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.22
Consensus pattern (87 bp):
AAAAATATAAGAATTCAAGAGAATACCAAGCTCCAAACAAGCTGTTGATCAAATCAGTCAAGCTA
AATTCATCAGATCTGTCAAGCT
Found at i:48082548 original size:41 final size:42
Alignment explanation
Indices: 48082503--48082588 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 42
48082493 GGAGAAAGGA
* *
48082503 AGGGAAGGAGCTTGGAG-AAAAATCGGTTATGGTGGTTCACT
1 AGGGAAAGAGCTTGGAGAAAAAATCGGCTATGGTGGTTCACT
48082544 AGGGAAAGAGCTTGGAGAAAAAAATCGGCTATGGTGGTTCACT
1 AGGGAAAGAGCTTGGAG-AAAAAATCGGCTATGGTGGTTCACT
48082587 AG
1 AG
48082589 ATTGAGGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 16 0.39
43 25 0.61
ACGTcount: A:0.33, C:0.10, G:0.35, T:0.22
Consensus pattern (42 bp):
AGGGAAAGAGCTTGGAGAAAAAATCGGCTATGGTGGTTCACT
Found at i:48084115 original size:40 final size:40
Alignment explanation
Indices: 48083847--48084116 Score: 366
Period size: 40 Copynumber: 6.8 Consensus size: 40
48083837 TGGATGATAA
* ** * *
48083847 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48083887 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48083927 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48083967 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
48084007 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
48084047 CCGAGCT--GTCCCGAAGGCAATTGTGCGAGTTACTCTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
48084086 -CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
48084117 AGTTATATCC
Statistics
Matches: 208, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 31 0.15
39 3 0.01
40 174 0.84
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:48084470 original size:18 final size:15
Alignment explanation
Indices: 48084430--48084459 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
48084420 CTTTGCTTGA
48084430 AACTTACTAAGCATT
1 AACTTACTAAGCATT
48084445 AACTTACTAAGCATT
1 AACTTACTAAGCATT
48084460 TAATGCTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
AACTTACTAAGCATT
Found at i:48087057 original size:13 final size:13
Alignment explanation
Indices: 48087016--48087062 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
48087006 TTTTGTTTTG
*
48087016 TTTTGTTTTATTA
1 TTTTATTTTATTA
48087029 TTATTATTTATCATTA
1 TT-TTATTT-T-ATTA
48087045 TTTTATTTTATTA
1 TTTTATTTTATTA
48087058 TTTTA
1 TTTTA
48087063 GGATTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 11 0.37
14 6 0.20
15 7 0.23
16 6 0.20
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:48092881 original size:48 final size:48
Alignment explanation
Indices: 48092825--48093098 Score: 282
Period size: 48 Copynumber: 5.7 Consensus size: 48
48092815 AAGGGTGAAT
* * * *
48092825 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* * * *
48092873 GGCCGATGCCATGTCCCAAACATGGTCTTACTCTAACTCTCATCTCAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
** * *
48092921 TGCCGATGCCATGTCCCTGACATGGTCTTACACTAGCGCACATATCAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* ** * * *
48092969 TGCTGATGCCATACCCCAGACATGGTCTTACACTGGCTCTCAT-TACAT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-CAA
* * ** * *
48093017 TGCTGATGCCATGTTCCAAACATTTTCTTACACTGGCTCTCATATC-G
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* *
48093064 TGGCCGATGCCATGTCCCAGACATGCTCTTACACT
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
48093099 GACAGACATA
Statistics
Matches: 188, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.01
48 185 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
Found at i:48093099 original size:96 final size:96
Alignment explanation
Indices: 48092823--48093101 Score: 337
Period size: 96 Copynumber: 2.9 Consensus size: 96
48092813 AAAAGGGTGA
* *
48092823 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
* * *
48092888 CCAAACATGGTCTTACTCTAACTCTCATCTC
66 CCAGACATGGTCTTACACTGACTCTCATCTC
* * ** * * * **
48092919 AATGCCGATGCCATGTCCCTGACATGGTCTTACACTAGCGCACATATCAAT-GCTGATGCCATAC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-GTGGCCGATGCCATGT
*
48092983 CCCAGACATGGTCTTACACTGGCTCTCAT-TAC
65 CCCAGACATGGTCTTACACTGACTCTCATCT-C
* ** * *
48093015 ATTGCTGATGCCATGTTCCAAACATTTTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
*
48093080 CCAGACATGCTCTTACACTGAC
66 CCAGACATGGTCTTACACTGAC
48093102 AGACATATCA
Statistics
Matches: 149, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
95 2 0.01
96 147 0.99
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (96 bp):
ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
CCAGACATGGTCTTACACTGACTCTCATCTC
Found at i:48103194 original size:51 final size:51
Alignment explanation
Indices: 48103135--48103236 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
48103125 TGAGCGGTTA
48103135 ACATATAGAGCCAAAAAATTGACCATGAATGTGGTCGGTAGAGATGACAAG
1 ACATATAGAGCCAAAAAATTGACCATGAATGTGGTCGGTAGAGATGACAAG
*
48103186 ACATATAGAGCCAAACAATTGACCATGAATGTGGTCGGTAGAGATGACAAG
1 ACATATAGAGCCAAAAAATTGACCATGAATGTGGTCGGTAGAGATGACAAG
48103237 TATCAAAAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (51 bp):
ACATATAGAGCCAAAAAATTGACCATGAATGTGGTCGGTAGAGATGACAAG
Found at i:48124166 original size:46 final size:46
Alignment explanation
Indices: 48124113--48124222 Score: 143
Period size: 45 Copynumber: 2.4 Consensus size: 46
48124103 CTTTGGTTTT
* * * *
48124113 TCGAGTCTACAACAAATGCATGAGCTTAGAAACC-ATTTTTGTATTC
1 TCGAGTCTACAACATATGCAGGAGC-TAGAAACCTAATCTTGTATTC
* *
48124159 TCGAGTCTGCAACATAT-CAGGAGCTCGAAACCTAATCTTGTATTC
1 TCGAGTCTACAACATATGCAGGAGCTAGAAACCTAATCTTGTATTC
48124204 TCGAGTCTACAACATATGC
1 TCGAGTCTACAACATATGC
48124223 GCAAGCTCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 7 0.13
45 32 0.58
46 16 0.29
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (46 bp):
TCGAGTCTACAACATATGCAGGAGCTAGAAACCTAATCTTGTATTC
Found at i:48130867 original size:43 final size:43
Alignment explanation
Indices: 48130798--48130919 Score: 201
Period size: 43 Copynumber: 2.9 Consensus size: 43
48130788 TCTGAATTTA
**
48130798 TTCACCGGCATT-TCCCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
48130840 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
48130883 TTTACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
48130920 ATTCATCATA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
42 12 0.16
43 62 0.84
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:48137754 original size:16 final size:18
Alignment explanation
Indices: 48137735--48137767 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
48137725 CATACGAATT
48137735 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
48137751 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
48137768 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:48138397 original size:43 final size:43
Alignment explanation
Indices: 48138330--48138451 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
48138320 TCTAAATTCA
*
48138330 TTCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
* * * *
48138372 TTCACTGGCATTATAGCCTGCTAGGCTTGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
48138415 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
48138452 ATTCATCATA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 11 0.16
43 59 0.84
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:48140088 original size:85 final size:85
Alignment explanation
Indices: 48139944--48140114 Score: 297
Period size: 85 Copynumber: 2.0 Consensus size: 85
48139934 TTGCTCATCT
* *
48139944 TCAACCCCATGGCTGAATATAGCAAGGAGAAACCATGGCTGGGGCTTTTCAAGCATCCAAGCTCG
1 TCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGCTTTTCAAGCATCCAAGCTCG
48140009 ATTGTAAGTCCGTTCTAGCC
66 ATTGTAAGTCCGTTCTAGCC
* *
48140029 TCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGTTTTTCAAGCTTCCAAGCTCG
1 TCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGCTTTTCAAGCATCCAAGCTCG
*
48140094 ATTGTAAGTCCGTTTTAGCC
66 ATTGTAAGTCCGTTCTAGCC
48140114 T
1 T
48140115 TGTTTTTAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (85 bp):
TCAACCCCATGGCCGAATATAGCAAGGAGAAACCATGGCTAGGGCTTTTCAAGCATCCAAGCTCG
ATTGTAAGTCCGTTCTAGCC
Found at i:48143205 original size:70 final size:70
Alignment explanation
Indices: 48143131--48143267 Score: 247
Period size: 70 Copynumber: 2.0 Consensus size: 70
48143121 GGGATTGTAT
*
48143131 AAAAAACGATGAATAAAATTATCCATTATTAATTTCTTTTCTATATTATATTAATAATTTATTAT
1 AAAAAACGATGAATAAAATTATCCATTACTAATTTCTTTTCTATATTATATTAATAATTTATTAT
48143196 ATATA
66 ATATA
* *
48143201 AAAAAACGATGAGTAAAATTATCCATTACTAATTTCTTTTCTATATTGTATTAATAATTTATTAT
1 AAAAAACGATGAATAAAATTATCCATTACTAATTTCTTTTCTATATTATATTAATAATTTATTAT
48143266 AT
66 AT
48143268 GGTTAGATAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.45
Consensus pattern (70 bp):
AAAAAACGATGAATAAAATTATCCATTACTAATTTCTTTTCTATATTATATTAATAATTTATTAT
ATATA
Found at i:48144421 original size:19 final size:17
Alignment explanation
Indices: 48144391--48144425 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
48144381 AATAATAATT
48144391 TAAATAATATAAATTAA
1 TAAATAATATAAATTAA
48144408 TAAATAATTCATAAATTA
1 TAAATAA-T-ATAAATTA
48144426 TTTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAATAATATAAATTAA
Found at i:48152094 original size:46 final size:43
Alignment explanation
Indices: 48152020--48152269 Score: 232
Period size: 46 Copynumber: 5.5 Consensus size: 43
48152010 GTCTATGCTG
* * *
48152020 TGTCCCAGACAGGTCTTATACT-GACACATGTAACTGTGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT--C-GTGCCGATGCA
* * *
48152066 TGTCCCAGACATGTCTTATACTAGCACATCTCGTAGCTGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGT-GCCGATGCA
* * *
48152110 TATCCCAGACATGTCTTACACTAGCACATCTCATAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGT-GCCGATGCA
* * * *
48152154 TGTCCCAGACATGTCTAACATTGGCTAACATCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCG-TGCCGATGCA
* *
48152200 TGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCA--CATCTC-GTGCCGATG-CA
48152247 TGTCCCAGACATAGTCTTACACT
1 TGTCCCAGACAT-GTCTTACACT
48152270 GGCTCTCATT
Statistics
Matches: 173, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.01
44 70 0.40
46 76 0.44
47 15 0.09
48 10 0.06
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTGCCGATGCA
Found at i:48152126 original size:44 final size:44
Alignment explanation
Indices: 48152057--48152269 Score: 234
Period size: 44 Copynumber: 4.7 Consensus size: 44
48152047 ATGTAACTGT
* *
48152057 GCCGATGCATGTCCCAGACATGTCTTATACTAGCACATCTCGTA
1 GCCGACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTA
* * *
48152101 GCTGACGCATATCCCAGACATGTCTTACACTAGCACATCTCATA
1 GCCGACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTA
* * *
48152145 GCCGACGCATGTCCCAGACATGTCTAACATTGGCTAACATCTCG-A
1 GCCGACGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA
*
48152190 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTC-TCAA
1 -GCCGACGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A
*
48152236 TGCCGATGCCATGTCCCAGACATAGTCTTACACT
1 -GCCGACG-CATGTCCCAGACAT-GTCTTACACT
48152270 GGCTCTCATT
Statistics
Matches: 144, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
43 2 0.01
44 72 0.50
45 1 0.01
46 45 0.31
47 14 0.10
48 10 0.07
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (44 bp):
GCCGACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTA
Found at i:48152185 original size:90 final size:90
Alignment explanation
Indices: 48152056--48152273 Score: 273
Period size: 90 Copynumber: 2.4 Consensus size: 90
48152046 CATGTAACTG
* * *
48152056 TGCCGATGCATGTCCCAGACATGTCTTATACTAGC-ACATCTCGTA-GCTGACGCATATCCCAGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCG-AGGCCGACGCATATCCCAGA
48152119 CATGTCTTACACTAGCA-CATCTC-A
65 CATGTCTTACACTAGCACCATCTCAA
* * * * *
48152143 TAGCCGACGCATGTCCCAGACATGTCTAACATTGGCTAACATCTCGAGGCCGATGCATGTCCCAG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-ACATCTCGAGGCCGACGCATATCCCAG
*
48152208 ACATGTCTTACACTAGCACTCGTCTCAA
64 ACATGTCTTACACTAGCAC-CATCTCAA
48152236 TGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCT
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
48152274 CTCATTATGT
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
87 1 0.01
88 29 0.26
89 1 0.01
90 40 0.36
92 11 0.10
93 16 0.15
94 12 0.11
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (90 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAGGCCGACGCATATCCCAGAC
ATGTCTTACACTAGCACCATCTCAA
Found at i:48158611 original size:22 final size:22
Alignment explanation
Indices: 48158563--48158615 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
48158553 GATTCATGCT
*
48158563 AAGA-GTTCGCACAATGCATAT
1 AAGAGGTTCGCACAATGCATAG
* * *
48158584 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAATGCATAG
48158606 AAGAGGTTCG
1 AAGAGGTTCG
48158616 TAGATGCACA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (22 bp):
AAGAGGTTCGCACAATGCATAG
Found at i:48164331 original size:22 final size:21
Alignment explanation
Indices: 48164301--48164364 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 21
48164291 TACAAATTAA
48164301 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
48164323 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
48164344 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
48164363 AT
1 AT
48164365 ATAAGATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 17 0.44
21 10 0.26
22 12 0.31
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:48164353 original size:19 final size:19
Alignment explanation
Indices: 48164318--48164396 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
48164308 AGATTACAAG
48164318 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
48164339 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
48164358 ATCATATATAAGATTG--T
1 ATCATATCTAAGATTGCAT
48164375 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48164394 ATC
1 ATC
48164397 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:48165223 original size:309 final size:309
Alignment explanation
Indices: 48164653--48165268 Score: 1106
Period size: 309 Copynumber: 2.0 Consensus size: 309
48164643 GAGTCTTGAG
48164653 TTCTTGATCCTTGATCTTCTTTAAATGGCCTCTTGATGGCTTTAATCTGCTTCACTGCAACTTAG
1 TTCTTGATCCTTGATCTTCTTTAAATGGCCTCTTGATGGCTTTAATCTGCTTCACTGCAACTTAG
48164718 GAAGGAAATATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCT
66 GAAGGAAATATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCT
48164783 TCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGC
131 TCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGC
*
48164848 GAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGG
196 GAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCACCTTGG
* * * ** *
48164913 ATCCGCTTCAGTCTAATCATCTGAAGGTTAGATTTGCTATGTGTCTGCC
261 ATCCGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCC
48164962 TTCTTGATCCTTGATCTTCTTTAAATGGCCTCTTGATGGCTTTAATCTGCTTCACTGCAACTTAG
1 TTCTTGATCCTTGATCTTCTTTAAATGGCCTCTTGATGGCTTTAATCTGCTTCACTGCAACTTAG
48165027 GAAGGAAATATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCT
66 GAAGGAAATATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCT
*
48165092 TCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGT
131 TCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGC
* * * * *
48165157 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGG
196 GAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCACCTTGG
*
48165222 ATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTG
261 ATCCGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTG
48165269 GTCTCCGTCG
Statistics
Matches: 293, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
309 293 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (309 bp):
TTCTTGATCCTTGATCTTCTTTAAATGGCCTCTTGATGGCTTTAATCTGCTTCACTGCAACTTAG
GAAGGAAATATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTTATCT
TCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGC
GAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCACCTTGG
ATCCGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCC
Found at i:48165444 original size:206 final size:206
Alignment explanation
Indices: 48165090--48165625 Score: 932
Period size: 206 Copynumber: 2.6 Consensus size: 206
48165080 AATCTGTTAT
* * *
48165090 CTTCGATCTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCTTCGTAAGCAC
48165155 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
* **
48165220 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGGTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCAACGAATATG
48165285 GAGACGCCAAA
196 GAGACGCCAAA
48165296 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCTTCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCTTCGTAAGCAC
* *
48165361 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAATGATGCCAAATCACCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
*
48165426 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTTTCTGCTCTCCAACGAATATG
131 GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCAACGAATATG
48165491 GAGACGCCAAA
196 GAGACGCCAAA
* * * *
48165502 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAAGCATCTTAGATTTGCTT-TAGCGTAAAC-
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCT-TCGTAAGCA
48165565 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
48165626 TGCTATCTTC
Statistics
Matches: 314, Mismatches: 15, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
205 60 0.19
206 254 0.81
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCTTCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
GGATCTGCTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCAACGAATATG
GAGACGCCAAA
Found at i:48165624 original size:46 final size:44
Alignment explanation
Indices: 48165572--48165665 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
48165562 AACCGTGAAA
* * * * *
48165572 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
1 GCCAAATCAGCTA--TCTTCAACTTGTTCCCTATAAACACAAGGAT
* *
48165618 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
48165662 GCCA
1 GCCA
48165666 TGCTAAAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 29 0.71
46 12 0.29
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
Found at i:48165699 original size:88 final size:88
Alignment explanation
Indices: 48165587--48166545 Score: 1825
Period size: 88 Copynumber: 10.9 Consensus size: 88
48165577 ATCAGCTATG
* * * * *
48165587 TCTTCGATTTG-TTC-CTTGTAAGCACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTA
1 TCTTCGATCTGCTTCGC-TGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
*
48165649 TAAACACAGGGATGCCATGCTAAAA
64 TAAACACAGGGATGCCATGCTGAAA
48165674 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48165739 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48165762 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48165827 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48165850 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48165915 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48165938 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166003 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166026 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166091 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166114 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166179 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166202 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166267 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166290 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166355 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166378 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166443 AACACAGGGATGCCATGCTGAAA
66 AACACAGGGATGCCATGCTGAAA
48166466 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166531 AACACAGGGATGCCA
66 AACACAGGGATGCCA
48166546 AATCTACTAT
Statistics
Matches: 863, Mismatches: 6, Indels: 5
0.99 0.01 0.01
Matches are distributed among these distances:
87 13 0.02
88 849 0.98
89 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
AACACAGGGATGCCATGCTGAAA
Found at i:48165897 original size:176 final size:176
Alignment explanation
Indices: 48165587--48166744 Score: 1998
Period size: 176 Copynumber: 6.5 Consensus size: 176
48165577 ATCAGCTATG
* * * * *
48165587 TCTTCGATTTG-TTC-CTTGTAAGCACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTA
1 TCTTCGATCTGCTTCGC-TGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
*
48165649 TAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATC
64 TAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATC
48165714 TGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
129 TGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
48165762 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48165827 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48165892 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
48165938 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166003 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48166068 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
48166114 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166179 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48166244 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
48166290 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166355 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48166420 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
48166466 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
* *
48166531 AACACAGGGATGCCAAATCTACTATCTTTGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
66 AACACAGGGATG-C----C-A-T-GC--T--GA----A---A----TCTTCGATCTGCTTCGCTG
48166596 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
108 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
48166661 GAAA
173 GAAA
48166665 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166730 AACACAGGGATGCCA
66 AACACAGGGATGCCA
48166745 AATCTGCTAT
Statistics
Matches: 949, Mismatches: 8, Indels: 34
0.96 0.01 0.03
Matches are distributed among these distances:
175 13 0.01
176 758 0.80
177 2 0.00
181 1 0.00
182 1 0.00
183 1 0.00
184 1 0.00
186 1 0.00
188 2 0.00
192 1 0.00
193 1 0.00
194 1 0.00
198 1 0.00
199 165 0.17
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (176 bp):
TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAA
Found at i:48166073 original size:264 final size:264
Alignment explanation
Indices: 48165587--48166744 Score: 2016
Period size: 264 Copynumber: 4.3 Consensus size: 264
48165577 ATCAGCTATG
* * * * *
48165587 TCTTCGATTTG-TTC-CTTGTAAGCACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTA
1 TCTTCGATCTGCTTCGC-TGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
*
48165649 TAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATC
64 TAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATC
48165714 TGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGC
129 TGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGC
48165779 TGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATG
194 TGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATG
48165844 CTGAAA
259 CTGAAA
48165850 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48165915 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48165980 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
48166045 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
196 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
48166110 GAAA
261 GAAA
48166114 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166179 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48166244 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
131 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
48166309 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
196 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
48166374 GAAA
261 GAAA
48166378 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166443 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
66 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
48166508 CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTTGGGATGCCATGCT
131 CTATCTTCGATTTGTTCCC--T----------AT---AAA-C-AC-A-----GGGATGCCATGCT
48166573 GAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
173 GAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCC
48166638 TATAAACACAGGGATGCCATGCTGAAA
238 TATAAACACAGGGATGCCATGCTGAAA
48166665 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
1 TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
48166730 AACACAGGGATGCCA
66 AACACAGGGATGCCA
48166745 AATCTGCTAT
Statistics
Matches: 863, Mismatches: 6, Indels: 28
0.96 0.01 0.03
Matches are distributed among these distances:
263 13 0.02
264 654 0.76
265 1 0.00
266 1 0.00
276 2 0.00
279 3 0.00
280 1 0.00
281 2 0.00
282 1 0.00
287 185 0.21
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (264 bp):
TCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATA
AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTG
CTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTG
TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCATGCT
GAAA
Found at i:48166600 original size:199 final size:199
Alignment explanation
Indices: 48166361--48166757 Score: 785
Period size: 199 Copynumber: 2.0 Consensus size: 199
48166351 TATAAACACA
48166361 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166426 TCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCA
66 TCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCA
48166491 CAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTAT
131 CAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTAT
48166556 CTTT
196 CTTT
48166560 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166625 TCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCA
66 TCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCA
*
48166690 CAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTAT
131 CAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTAT
48166755 CTT
196 CTT
48166758 CGATCTACAT
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
199 197 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (199 bp):
GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
TCGATTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCA
CAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTAT
CTTT
Found at i:48166643 original size:111 final size:111
Alignment explanation
Indices: 48166449--48166656 Score: 416
Period size: 111 Copynumber: 1.9 Consensus size: 111
48166439 TATAAACACA
48166449 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166514 TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTT
66 TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTT
48166560 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166625 TCGATTTGTTCCCTATAAACACAGGGATGCCA
66 TCGATTTGTTCCCTATAAACACAGGGATGCCA
48166657 TGCTGAAATC
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (111 bp):
GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
TCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTT
Found at i:48166692 original size:44 final size:44
Alignment explanation
Indices: 48166560--48166693 Score: 164
Period size: 44 Copynumber: 3.0 Consensus size: 44
48166550 TACTATCTTT
48166560 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
* * ** * * * *
48166604 GGAATGTCA-GATCTGCTATCTTCGATTTG-TTCCCTATAAACACA
1 GGGATGCCATG--CTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
48166648 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
48166692 GG
1 GG
48166694 AATGTCAGAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
43 15 0.21
44 40 0.57
45 15 0.21
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (44 bp):
GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA
Found at i:48166709 original size:88 final size:88
Alignment explanation
Indices: 48166560--48166744 Score: 370
Period size: 88 Copynumber: 2.1 Consensus size: 88
48166550 TACTATCTTT
48166560 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166625 TCGATTTGTTCCCTATAAACACA
66 TCGATTTGTTCCCTATAAACACA
48166648 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
1 GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
48166713 TCGATTTGTTCCCTATAAACACA
66 TCGATTTGTTCCCTATAAACACA
48166736 GGGATGCCA
1 GGGATGCCA
48166745 AATCTGCTAT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 97 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (88 bp):
GGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCT
TCGATTTGTTCCCTATAAACACA
Found at i:48166736 original size:44 final size:45
Alignment explanation
Indices: 48166576--48166763 Score: 204
Period size: 44 Copynumber: 4.2 Consensus size: 45
48166566 CCATGCTGAA
* * *
48166576 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGTCAGATCTGCT
* * * **
48166621 ATCTTCGATTTG-TTCCCTATAAACACAGGGATG-C-CATGCTGAA
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGTCAGAT-CTGCT
* * *
48166664 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGTCAGATCTGCT
* * * *
48166709 ATCTTCGATTTG-TTCCCTATAAACACAGGGATGCCAAATCTGCT
1 ATCTTCGATCTGCTTCCCTATAAACACAGGAATGTCAGATCTGCT
48166753 ATCTTCGATCT
1 ATCTTCGATCT
48166764 ACATTGCCCC
Statistics
Matches: 115, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
42 2 0.02
43 15 0.13
44 70 0.61
45 26 0.23
46 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (45 bp):
ATCTTCGATCTGCTTCCCTATAAACACAGGAATGTCAGATCTGCT
Found at i:48167628 original size:16 final size:15
Alignment explanation
Indices: 48167607--48167664 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 15
48167597 TCTCCATGTT
48167607 TCTTTTTTCATTTTTC
1 TCTTTTTTC-TTTTTC
*
48167623 TCTTTTTTCTTTTTAT
1 TCTTTTTTCTTTTT-C
*
48167639 TTTTTTTTCTCTTTTAC
1 TCTTTTTTCT-TTTT-C
48167656 TTCTTTTTT
1 -TCTTTTTT
48167665 TCCTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
15 5 0.14
16 18 0.51
17 5 0.14
18 7 0.20
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (15 bp):
TCTTTTTTCTTTTTC
Found at i:48167629 original size:9 final size:8
Alignment explanation
Indices: 48167605--48167674 Score: 56
Period size: 9 Copynumber: 8.4 Consensus size: 8
48167595 CCTCTCCATG
48167605 TTTC-TTT
1 TTTCTTTT
*
48167612 TTTC-ATT
1 TTTCTTTT
48167619 TTTCTCTTT
1 TTTCT-TTT
48167628 TTTCTTTT
1 TTTCTTTT
48167636 TATT-TTTT
1 T-TTCTTTT
48167644 TTTCTCTTT
1 TTTCT-TTT
48167653 TACTTCTTTT
1 T--TTCTTTT
48167663 TTTCCTTTT
1 TTT-CTTTT
48167672 TTT
1 TTT
48167675 TTTGAAATAG
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
7 12 0.23
8 12 0.23
9 21 0.40
10 4 0.08
11 4 0.08
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTCTTTT
Found at i:48167665 original size:23 final size:24
Alignment explanation
Indices: 48167606--48167665 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 24
48167596 CTCTCCATGT
*
48167606 TTCTTTTTTCATTTTTCTCTTTTTTC
1 TTCTTTTTT--TTTTTCTCTTTTTAC
*
48167632 TTTTTATTTTTTTTTCTC-TTTTAC
1 TTCTT-TTTTTTTTTCTCTTTTTAC
48167656 TTCTTTTTTT
1 TTCTTTTTTT
48167666 CCTTTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 5 0.17
24 9 0.30
25 8 0.27
26 4 0.13
27 4 0.13
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (24 bp):
TTCTTTTTTTTTTTCTCTTTTTAC
Found at i:48167671 original size:25 final size:24
Alignment explanation
Indices: 48167609--48167672 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 24
48167599 TCCATGTTTC
48167609 TTTTTTCATTTTTCTCTTTTTTCTT
1 TTTTTTC-TTTTTCTCTTTTTTCTT
*
48167634 TTTATTTTTTTTTCTCTTTTACTTCTT
1 TTT-TTTCTTTTTCTCTTTT--TTCTT
*
48167661 TTTTTCCTTTTT
1 TTTTTTCTTTTT
48167673 TTTTTGAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
25 15 0.45
26 10 0.30
27 8 0.24
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.80
Consensus pattern (24 bp):
TTTTTTCTTTTTCTCTTTTTTCTT
Found at i:48170101 original size:2 final size:2
Alignment explanation
Indices: 48170090--48170128 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
48170080 AGCCGTGATC
* *
48170090 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT TT CT TT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
48170129 TTTTAATAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (2 bp):
CT
Found at i:48170209 original size:16 final size:14
Alignment explanation
Indices: 48170168--48170220 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
48170158 TTTATAATTT
*
48170168 TGAATCCAAATG-A
1 TGAATGCAAATGCA
48170181 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
48170196 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
48170211 TGAATGCAAA
1 TGAATGCAAA
48170221 AGGTATCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 10 0.29
16 6 0.18
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:48173243 original size:19 final size:19
Alignment explanation
Indices: 48173208--48173989 Score: 1532
Period size: 19 Copynumber: 41.2 Consensus size: 19
48173198 AGATTACAAG
48173208 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
48173229 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173248 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173267 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173286 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173305 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173324 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173343 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173362 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173381 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173400 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173419 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173438 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173457 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173476 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173495 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173514 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173533 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173552 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173571 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173590 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173609 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173628 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173647 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173666 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173685 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173704 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173723 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173742 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173761 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173780 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173799 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173818 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173837 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173856 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173875 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173894 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173913 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173932 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173951 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
48173968 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
48173987 ATC
1 ATC
48173990 CTTAAAGATT
Statistics
Matches: 759, Mismatches: 0, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
17 17 0.02
19 733 0.97
20 1 0.00
21 8 0.01
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:48175736 original size:71 final size:71
Alignment explanation
Indices: 48175620--48176472 Score: 1706
Period size: 71 Copynumber: 12.0 Consensus size: 71
48175610 TTTATTAAAA
48175620 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48175685 ACGTAC
66 ACGTAC
48175691 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48175756 ACGTAC
66 ACGTAC
48175762 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48175827 ACGTAC
66 ACGTAC
48175833 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48175898 ACGTAC
66 ACGTAC
48175904 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48175969 ACGTAC
66 ACGTAC
48175975 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176040 ACGTAC
66 ACGTAC
48176046 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176111 ACGTAC
66 ACGTAC
48176117 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176182 ACGTAC
66 ACGTAC
48176188 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176253 ACGTAC
66 ACGTAC
48176259 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176324 ACGTAC
66 ACGTAC
48176330 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176395 ACGTAC
66 ACGTAC
48176401 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
1 ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
48176466 ACGTAC
66 ACGTAC
48176472 A
1 A
48176473 CAACACAAGA
Statistics
Matches: 782, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 782 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
ATACATACTATTATCACTTTTCCACTACTAAAAGAGAAGAGCTTGCGAAAGCTCAGTGAATACAC
ACGTAC
Found at i:48177514 original size:22 final size:22
Alignment explanation
Indices: 48177486--48177537 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
48177476 TAACAGTTCA
*
48177486 CACAATGCATAGATGAGGTTTG
1 CACAATGCATAGAAGAGGTTTG
*
48177508 CACAATGCATGGAAGAGGTTTG
1 CACAATGCATAGAAGAGGTTTG
*
48177530 GAC-ATGCA
1 CACAATGCA
48177538 CATGTTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (22 bp):
CACAATGCATAGAAGAGGTTTG
Found at i:48180162 original size:19 final size:18
Alignment explanation
Indices: 48180133--48180169 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
48180123 TTATTATGCC
*
48180133 AATTTTATAAATAAAAAA
1 AATTTTATAAAGAAAAAA
48180151 AATTTATATAAAGAAAAAA
1 AATTT-TATAAAGAAAAAA
48180170 NATACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
AATTTTATAAAGAAAAAA
Found at i:48184367 original size:23 final size:23
Alignment explanation
Indices: 48184305--48184515 Score: 266
Period size: 23 Copynumber: 9.2 Consensus size: 23
48184295 GGCTACATCT
48184305 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
48184328 CA-TGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * * *
48184350 TAGTGGTAGATTCAGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
*
48184373 CAGTGGTAGCTTCGACTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
48184396 CAGTGGTAGCTTCGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
48184419 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
48184442 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* **
48184465 CAGTGGTAGCTTGGGCTACGTTA
1 CAGTGGTAGCTTCGGCTACAATA
* * * *
48184488 CAGTGATAGCTTTGGCTATATTA
1 CAGTGGTAGCTTCGGCTACAATA
48184511 CAGTG
1 CAGTG
48184516 TGGCACTTTG
Statistics
Matches: 164, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
22 25 0.15
23 135 0.82
24 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:48187813 original size:22 final size:22
Alignment explanation
Indices: 48187773--48187823 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
48187763 TATTCATGCT
*
48187773 AAGA-GTTCGCACAACGCATAG
1 AAGAGGTTTGCACAACGCATAG
* * *
48187794 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTTGCACAACGCATAG
48187816 AAGAGGTT
1 AAGAGGTT
48187824 CGAACATGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (22 bp):
AAGAGGTTTGCACAACGCATAG
Found at i:48191560 original size:4 final size:4
Alignment explanation
Indices: 48191551--48191575 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
48191541 AATAGTATAG
48191551 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
48191576 TGAAATGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:48191906 original size:3 final size:3
Alignment explanation
Indices: 48191900--48191957 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
48191890 ATTTGAGAAA
* *
48191900 AAT AAT ATAT AAT AAAT AAT AAT AAT AAT -AT ATAT AAT AAT ATT TAT
1 AAT AAT A-AT AAT -AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
48191947 AAT AA- AAT AAT
1 AAT AAT AAT AAT
48191958 TTTATAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
2 4 0.09
3 33 0.72
4 9 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:48191936 original size:12 final size:12
Alignment explanation
Indices: 48191904--48191970 Score: 64
Period size: 12 Copynumber: 5.4 Consensus size: 12
48191894 GAGAAAAATA
48191904 ATATATAATAA-
1 ATATATAATAAT
48191915 ATAATAATAATAAT
1 AT-AT-ATAATAAT
48191929 ATATATAATAAT
1 ATATATAATAAT
* *
48191941 ATTTATAATAAA
1 ATATATAATAAT
* *
48191953 ATAATTTTATAAT
1 AT-ATATAATAAT
48191966 ATATA
1 ATATA
48191971 ATATAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.04
12 24 0.53
13 17 0.38
14 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:48191948 original size:37 final size:35
Alignment explanation
Indices: 48191900--48192040 Score: 103
Period size: 37 Copynumber: 3.9 Consensus size: 35
48191890 ATTTGAGAAA
48191900 AATAATATATAAT-AAATAATAATAATAATATATAT
1 AATAATATATAATAAAATAAT-ATAATAATATATAT
* *
48191935 AATAATATTTATAATAAAATAATTTTATAATATATA-
1 AATAATA--TATAATAAAATAATATAATAATATATAT
*
48191971 ATATAA-A-ATAAGGTTAAAATAATATAAATAACAATATAT
1 A-ATAATATATAA---TAAAATAATAT-AATAA-TATATAT
* *
48192010 GAAAAATATATATATAAAATAA-ATAAGAATA
1 -AATAATATATA-ATAAAATAATATAATAATA
48192041 AATTTAAGAC
Statistics
Matches: 84, Mismatches: 8, Indels: 27
0.71 0.07 0.23
Matches are distributed among these distances:
33 4 0.05
35 7 0.08
36 13 0.15
37 29 0.35
38 14 0.17
39 11 0.13
40 2 0.02
41 3 0.04
42 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (35 bp):
AATAATATATAATAAAATAATATAATAATATATAT
Found at i:48191991 original size:25 final size:25
Alignment explanation
Indices: 48191948--48192031 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
48191938 AATATTTATA
* *
48191948 ATAAAATAATTTTATAATATATAAT
1 ATAAAATAATGTTAAAATATATAAT
*
48191973 ATAAAATAAGGTTAAAATAATATAA-
1 ATAAAATAATGTTAAAAT-ATATAAT
*
48191998 ATAACAATATATG-AAAAATATAT-AT
1 ATAA-AATA-ATGTTAAAATATATAAT
48192023 ATAAAATAA
1 ATAAAATAA
48192032 ATAAGAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.02
24 5 0.10
25 27 0.54
26 15 0.30
27 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (25 bp):
ATAAAATAATGTTAAAATATATAAT
Found at i:48192040 original size:23 final size:22
Alignment explanation
Indices: 48191897--48192040 Score: 57
Period size: 25 Copynumber: 6.3 Consensus size: 22
48191887 ATAATTTGAG
*
48191897 AAAA-ATA-ATATATAATAAAT
1 AAAATATATATATAAAATAAAT
* *
48191917 --AATA-ATA-ATAATATATAT
1 AAAATATATATATAAAATAAAT
* *
48191935 AATAATATTTATAATAAAATAATTTT
1 AA-AATATATAT-ATAAAATAA--AT
* *
48191961 ATAATATATAATATAAAATAAGGTT
1 AAAATATAT-ATATAAAATAA--AT
* *
48191986 AAAATAATATAAATAACAATATAT
1 AAAAT-ATATATATAA-AATAAAT
48192010 GAAAAATATATATATAAAATAAAT
1 --AAAATATATATATAAAATAAAT
48192034 AAGAATA
1 AA-AATA
48192041 AATTTAAGAC
Statistics
Matches: 91, Mismatches: 17, Indels: 29
0.66 0.12 0.21
Matches are distributed among these distances:
18 11 0.12
19 2 0.02
21 4 0.04
22 4 0.04
23 4 0.04
24 14 0.15
25 35 0.38
26 17 0.19
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (22 bp):
AAAATATATATATAAAATAAAT
Found at i:48193941 original size:83 final size:83
Alignment explanation
Indices: 48193657--48194804 Score: 2089
Period size: 83 Copynumber: 13.8 Consensus size: 83
48193647 CTTGAGTCTG
* * *
48193657 TTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCTAAAACATC
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC-AAACCATC
*
48193722 TTGAGTCTGTTTGAGAACA
65 TTGAGTCTGTTTGAGAAAA
* * *
48193741 TTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCTAAAACATC
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC-AAACCATC
*
48193806 TTGAGTCTGTTTGAGAACA
65 TTGAGTCTGTTTGAGAAAA
* *
48193825 TTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
48193890 TGAGTCTATTTGAGAACA
66 TGAGTCTGTTTGAGAAAA
*
48193908 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48193973 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48193991 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194056 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48194074 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194139 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48194157 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194222 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48194240 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194305 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48194323 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194388 TGAGTCTGTTTGAGAAAA
66 TGAGTCTGTTTGAGAAAA
48194406 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
48194471 TGAGTCTGTTTGAGAATA
66 TGAGTCTGTTTGAGAAAA
*
48194489 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
48194554 TGAGTCTGTTTGAGAATA
66 TGAGTCTGTTTGAGAAAA
*
48194572 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
48194637 TGAGTCTGTTTGAGAATA
66 TGAGTCTGTTTGAGAAAA
*
48194655 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
*
48194720 TGAGTCTGTTTGAGAATA
66 TGAGTCTGTTTGAGAAAA
*
48194738 TTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
1 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
48194803 TG
66 TG
48194805 GATCTGCTTC
Statistics
Matches: 1054, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
83 914 0.87
84 140 0.13
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
TGAGTCTGTTTGAGAAAA
Found at i:48194942 original size:119 final size:119
Alignment explanation
Indices: 48194728--48195083 Score: 577
Period size: 119 Copynumber: 3.0 Consensus size: 119
48194718 CTTGAGTCTG
* * * * * * *
48194728 TTTGAGAATATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
48194793 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATA
* *
48194847 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
48194912 CAAATCATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTTAGATCTTCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATA
* *
48194966 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
48195031 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTAT
48195084 CTTCAATCTG
Statistics
Matches: 219, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 219 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATA
Found at i:48195128 original size:44 final size:44
Alignment explanation
Indices: 48195075--48195254 Score: 172
Period size: 44 Copynumber: 4.1 Consensus size: 44
48195065 TGAAGGTTAG
48195075 ATCTACTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTACTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
* *
48195119 ATCTGCTATCTTCAA-CGTGTTCCCTATAAACATAGGGATGCC--
1 ATCTACTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
* * * * * * *
48195161 ATGCTGA-AATCTTCAATCTGCTTCGC-AGAGAGCACAGGAATGTCAG
1 AT-CT-ACTATCTTCAATCTG-TTCCCTATA-AACACAGGGATGCCAA
* * *
48195207 ATCTACTATCTTCGATCTGTTCCCTATAAACATAGGGATGTCAA
1 ATCTACTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
48195251 ATCT
1 ATCT
48195255 TGTTTCTTTG
Statistics
Matches: 108, Mismatches: 18, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 15 0.14
44 74 0.69
45 15 0.14
46 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
ATCTACTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:48196150 original size:22 final size:22
Alignment explanation
Indices: 48196125--48196191 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
48196115 TCACCTTGGC
*
48196125 CTCTCCATTTTTTTTCTTTTTT
1 CTCTTCATTTTTTTTCTTTTTT
*
48196147 CTCTTTA-TTTTTTTCTCTTTTT
1 CTCTTCATTTTTTTTCT-TTTTT
* *
48196169 CTTTTCTTTTTTTTCTCTTTTTT
1 CTCTTCATTTTTTT-TCTTTTTT
48196192 TTTTGAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
21 9 0.24
22 14 0.38
23 11 0.30
24 3 0.08
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (22 bp):
CTCTTCATTTTTTTTCTTTTTT
Found at i:48196157 original size:11 final size:10
Alignment explanation
Indices: 48196132--48196192 Score: 52
Period size: 10 Copynumber: 5.7 Consensus size: 10
48196122 GGCCTCTCCA
48196132 TTTTTTT-TC
1 TTTTTTTCTC
*
48196141 TTTTTTCTCTTTA
1 TTTTTT-TC--TC
48196154 TTTTTTTCTC
1 TTTTTTTCTC
*
48196164 TTTTTCTTTTC
1 TTTTT-TTCTC
48196175 TTTTTTTTCTC
1 -TTTTTTTCTC
48196186 TTTTTTT
1 TTTTTTT
48196193 TTTGAAATAG
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
9 6 0.14
10 14 0.33
11 8 0.19
12 7 0.17
13 7 0.17
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:48196159 original size:21 final size:22
Alignment explanation
Indices: 48196133--48196191 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
48196123 GCCTCTCCAT
48196133 TTTTTTTCTTTTTTCTCTT-TA
1 TTTTTTTCTTTTTTCTCTTCTA
* *
48196154 TTTTTTTCTCTTTTTCTTTTCTT
1 TTTTTTTCT-TTTTTCTCTTCTA
48196177 TTTTTTCTCTTTTTT
1 TTTTTT-TCTTTTTT
48196192 TTTTGAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.27
22 9 0.27
23 12 0.36
24 3 0.09
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTTCTTTTTTCTCTTCTA
Found at i:48196160 original size:14 final size:13
Alignment explanation
Indices: 48196136--48196195 Score: 65
Period size: 14 Copynumber: 4.8 Consensus size: 13
48196126 TCTCCATTTT
48196136 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
48196150 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
48196164 -TTTTTCTTT-TC
1 TTTTTTTTTTCTC
48196175 --TTTTTTTTCTC
1 TTTTTTTTTTCTC
48196186 TTTTTTTTTT
1 TTTTTTTTTT
48196196 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
10 7 0.17
11 4 0.10
12 6 0.15
13 10 0.25
14 12 0.30
15 1 0.03
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:48196195 original size:22 final size:21
Alignment explanation
Indices: 48196132--48196195 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
48196122 GGCCTCTCCA
*
48196132 TTTTTTTTCT-TTTTTCTCTTT
1 TTTTTTTTCTCTTTTT-TTTTT
* *
48196153 ATTTTTTTCTCTTTTTCTTTTC
1 TTTTTTTTCTCTTTTT-TTTTT
48196175 TTTTTTTTCTCTTTTTTTTTT
1 TTTTTTTTCTCTTTTTTTTTT
48196196 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 13 0.35
22 24 0.65
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTTTTCTCTTTTTTTTTT
Found at i:48200770 original size:26 final size:26
Alignment explanation
Indices: 48200748--48201108 Score: 569
Period size: 26 Copynumber: 13.9 Consensus size: 26
48200738 TGCATAATAT
48200748 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
* *
48200774 GTTAGGTAAATTTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
48200800 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
* *
48200826 GTTAGGTAAATTTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
48200852 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
* * *
48200878 ATTAGGTAAATATTCCATGGTAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
48200904 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
* * *
48200930 ATTAGGTAAATATTCCATGGTAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
48200956 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
*
48200982 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
*
48201008 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
48201034 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
* * *
48201060 GTTGGGTAGATGTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
48201086 GTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATGTTCCATGATAA
48201109 GAATTTCATG
Statistics
Matches: 308, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 308 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
GTTAGGTAAATGTTCCATGATAATGG
Found at i:48202548 original size:27 final size:27
Alignment explanation
Indices: 48202507--48202646 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
48202497 GAGGAAGCGT
*
48202507 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
48202534 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
48202561 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
48202588 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
48202616 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
48202642 TCTGG
1 TCTGG
48202647 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:48202592 original size:54 final size:55
Alignment explanation
Indices: 48202507--48202646 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
48202497 GAGGAAGCGT
* * *
48202507 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
48202561 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
48202616 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
48202647 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:48210592 original size:12 final size:12
Alignment explanation
Indices: 48210577--48210716 Score: 72
Period size: 12 Copynumber: 11.4 Consensus size: 12
48210567 TTTATCTTTG
*
48210577 TATATTATTTAT
1 TATATTATATAT
48210589 TATATTAT-TAT
1 TATATTATATAT
48210600 ATATTATTATATAT
1 -TA-TATTATATAT
*
48210614 TATATTACATA-
1 TATATTATATAT
* *
48210625 CATTTTACTATAT
1 TATATTA-TATAT
*
48210638 ATATATTAT-TTT
1 -TATATTATATAT
*
48210650 ATATATTATCTAT
1 -TATATTATATAT
* *
48210663 CATATTATTTA-
1 TATATTATATAT
48210674 TATTATTATATAT
1 TA-TATTATATAT
* * *
48210687 TTTGTTTATAAAT
1 TAT-ATTATATAT
* *
48210700 TTTATTATATGT
1 TATATTATATAT
48210712 TATAT
1 TATAT
48210717 ATTTTACCAT
Statistics
Matches: 99, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
11 9 0.09
12 60 0.61
13 22 0.22
14 8 0.08
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (12 bp):
TATATTATATAT
Found at i:48210596 original size:25 final size:25
Alignment explanation
Indices: 48210579--48210687 Score: 118
Period size: 24 Copynumber: 4.4 Consensus size: 25
48210569 TATCTTTGTA
*
48210579 TATTATTTATTATATTATTATATAT
1 TATTATATATTATATTATTATATAT
* *
48210604 TATTATATATTATATTA-CATACAT
1 TATTATATATTATATTATTATATAT
*
48210628 T-TTACTATATATATATTATTTTATA-
1 TATTA-TATAT-TATATTATTATATAT
* *
48210653 TATTATCTATCATATTATT-TATAT
1 TATTATATATTATATTATTATATAT
48210677 TATTATATATT
1 TATTATATATT
48210688 TTGTTTATAA
Statistics
Matches: 69, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
23 7 0.10
24 28 0.41
25 28 0.41
26 6 0.09
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATATATTATATTATTATATAT
Found at i:48210678 original size:9 final size:10
Alignment explanation
Indices: 48210577--48210687 Score: 88
Period size: 10 Copynumber: 10.6 Consensus size: 10
48210567 TTTATCTTTG
48210577 TATATTATTTA
1 TATATTA-TTA
48210588 TTATATTATTA
1 -TATATTATTA
48210599 TATATTATTA
1 TATATTATTA
48210609 TATATTATATTACA
1 TATA-T-TATT--A
*
48210623 TACATT-TTA
1 TATATTATTA
48210632 CTATA-TA-TA
1 -TATATTATTA
48210641 TATTATT-TTA
1 TA-TATTATTA
48210651 TATATTATCTA
1 TATATTAT-TA
48210662 TCATATTATT-
1 T-ATATTATTA
48210672 TATATTATTA
1 TATATTATTA
48210682 TATATT
1 TATATT
48210688 TTGTTTATAA
Statistics
Matches: 84, Mismatches: 2, Indels: 28
0.74 0.02 0.25
Matches are distributed among these distances:
8 2 0.02
9 18 0.21
10 30 0.36
11 10 0.12
12 19 0.23
13 1 0.01
14 4 0.05
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (10 bp):
TATATTATTA
Found at i:48210688 original size:40 final size:39
Alignment explanation
Indices: 48210588--48210689 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 39
48210578 ATATTATTTA
48210588 TTATATTATTATATATTATTATATATTATATTACATACAT
1 TTATATTATTATATATT-TTATATATTATATTACATACAT
* *
48210628 TT-TACTATATATATATTATTTTATATATTAT-CTATCATATTAT
1 TTATA-T-TAT-TATA-TATTTTATATATTATATTA-CATA-CAT
48210671 TTATATTATTATATATTTT
1 TTATATTATTATATATTTT
48210690 GTTTATAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
39 2 0.04
40 9 0.17
41 9 0.17
42 22 0.42
43 9 0.17
44 2 0.04
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (39 bp):
TTATATTATTATATATTTTATATATTATATTACATACAT
Found at i:48215329 original size:26 final size:26
Alignment explanation
Indices: 48215299--48215380 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
48215289 TGAAATTCCC
*
48215299 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
48215325 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
48215351 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
48215377 ATCA
1 ATCA
48215381 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:48220961 original size:20 final size:20
Alignment explanation
Indices: 48220936--48221002 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
48220926 CAAATTTATA
48220936 TAAATAAAAAACAAAATAAT
1 TAAATAAAAAACAAAATAAT
** * * *
48220956 TAAAT-AGTATCAAATTTAT
1 TAAATAAAAAACAAAATAAT
48220975 ATAAATAAGAAAAACAAAATAAT
1 -TAAAT-A-AAAAACAAAATAAT
48220998 TAAAT
1 TAAAT
48221003 TGTATCTGGT
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
19 9 0.27
20 10 0.30
22 5 0.15
23 9 0.27
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (20 bp):
TAAATAAAAAACAAAATAAT
Found at i:48220971 original size:40 final size:42
Alignment explanation
Indices: 48220926--48221008 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
48220916 TAAAAAATAA
48220926 CAAATTTATATAAAT-A-AAAAACAAAATAATTAAATAGTAT
1 CAAATTTATATAAATAAGAAAAACAAAATAATTAAATAGTAT
*
48220966 CAAATTTATATAAATAAGAAAAACAAAATAATTAAATTGTAT
1 CAAATTTATATAAATAAGAAAAACAAAATAATTAAATAGTAT
48221008 C
1 C
48221009 TGGTTCAACA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 15 0.38
41 1 0.03
42 24 0.60
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (42 bp):
CAAATTTATATAAATAAGAAAAACAAAATAATTAAATAGTAT
Found at i:48220994 original size:24 final size:22
Alignment explanation
Indices: 48220905--48220992 Score: 69
Period size: 20 Copynumber: 4.1 Consensus size: 22
48220895 TTATTATGCC
*
48220905 AATTT-TATAAATAAAAAATAACA
1 AATTTATATAAAT-AGAAA-AACA
48220928 AATTTATATAAATA-AAAAACA
1 AATTTATATAAATAGAAAAACA
* * * *
48220949 AAATAAT-TAAATAG--TATCA
1 AATTTATATAAATAGAAAAACA
48220968 AATTTATATAAATAAGAAAAACA
1 AATTTATATAAAT-AGAAAAACA
48220991 AA
1 AA
48220993 ATAATTAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
19 8 0.16
20 11 0.22
21 11 0.22
22 3 0.06
23 11 0.22
24 7 0.14
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (22 bp):
AATTTATATAAATAGAAAAACA
Found at i:48224196 original size:11 final size:11
Alignment explanation
Indices: 48224180--48224205 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48224170 AAATAATATA
48224180 AATTCATAAAT
1 AATTCATAAAT
48224191 AATTCATAAAT
1 AATTCATAAAT
48224202 AATT
1 AATT
48224206 TTAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (11 bp):
AATTCATAAAT
Found at i:48227857 original size:17 final size:17
Alignment explanation
Indices: 48227835--48227867 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
48227825 GATATGATAC
48227835 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
48227852 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
48227868 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:48227868 original size:18 final size:17
Alignment explanation
Indices: 48227835--48227868 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48227825 GATATGATAC
*
48227835 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
48227852 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
48227869 ATCAGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:48228159 original size:22 final size:21
Alignment explanation
Indices: 48228124--48228199 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
48228114 AAAAGGTATC
* *
48228124 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
48228145 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
48228168 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
48228187 TGC-AATCATATCT
1 TACAAATCATATCT
48228200 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:48228184 original size:19 final size:19
Alignment explanation
Indices: 48228160--48228250 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
48228150 AATCATATCT
48228160 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
48228179 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
48228197 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
48228214 TCTAAGCTTGCATATCATA
1 TCTAAGATTGCATATCATA
*
48228233 TCTAAGATTACATATCAT
1 TCTAAGATTGCATATCAT
48228251 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:48228216 original size:35 final size:37
Alignment explanation
Indices: 48228153--48228250 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 37
48228143 ATTACAAAAT
48228153 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
*
48228189 CA-ATCATATCTAAGATTG-TATCATATCTAAGCTTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
*
48228224 CATATCATATCTAAGATTACATATCAT
1 CATATCATATCTAAGATT-GATATCAT
48228251 TGAAGATTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
35 21 0.38
36 18 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:48228658 original size:45 final size:45
Alignment explanation
Indices: 48228607--48228873 Score: 290
Period size: 45 Copynumber: 5.9 Consensus size: 45
48228597 GATATCAGCA
* *
48228607 ATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTT
1 ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
*
48228652 ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT
1 ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
**
48228697 -TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
1 ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
* * *
48228741 ATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
1 ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
* * * * * * * * *
48228786 ATCTTGGATTTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCT
1 ATCTTTGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGTT
* *
48228831 ATGTTTTCGTTCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 AT-CTTT-GATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
48228874 ATCTTGGATC
Statistics
Matches: 182, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 6 0.03
44 46 0.25
45 104 0.57
46 2 0.01
47 13 0.07
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTT
Found at i:48228723 original size:89 final size:89
Alignment explanation
Indices: 48228614--48228783 Score: 304
Period size: 89 Copynumber: 1.9 Consensus size: 89
48228604 GCAATCTTTG
* *
48228614 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTTATCTTTGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
48228679 AGAGATGCCAAATCTGCTTCTTCA
66 AGAGATGCCAAATCTGCTTCTTCA
* *
48228703 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCTGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
48228768 AGAGATGCCAAATCTG
66 AGAGATGCCAAATCTG
48228784 TCATCTTGGA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
AGAGATGCCAAATCTGCTTCTTCA
Found at i:48228942 original size:78 final size:78
Alignment explanation
Indices: 48228813--48229185 Score: 532
Period size: 78 Copynumber: 4.8 Consensus size: 78
48228803 ATGTAAACAC
* * *
48228813 ATGAAGGTCAGATCTGCTATGTTTTCGTTCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
48228878 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
48228891 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATTATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATC
48228955 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
48228969 ATGAAGGTTAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
48229034 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * ** *
48229047 ATAAAGGTCAGATTTGCTATGTCTTCGATCTGCTCTCCATCGAATATGGAGATGCCAAATCATAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
48229112 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * ** *
48229125 ATGAAGCTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGACGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATC
48229186 TGTTTCTTCG
Statistics
Matches: 265, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
77 1 0.00
78 262 0.99
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Done.