Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 147 of 290
Found at i:50053026 original size:42 final size:42
Alignment explanation
Indices: 50052976--50053083 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 42
50052966 TTGAGATTAC
* **
50052976 ATGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTT
1 ATGTAAGACCATATTTAGGATATGGCATCGATATGAGATCCT
* ** *
50053018 GTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCT
1 ATGTAAGACCATATTTAGGATA-TGGCATCGATATGAGATCCT
*
50053061 ATGAAAGACCATATTTAGGATAT
1 ATGTAAGACCATATTTAGGATAT
50053084 AGAATTGGTA
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 18 0.34
43 35 0.66
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCATATTTAGGATATGGCATCGATATGAGATCCT
Found at i:50053217 original size:20 final size:20
Alignment explanation
Indices: 50053171--50053221 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
50053161 TGGCAAAGTT
*
50053171 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATAG
* *
50053191 TATGTTGTGAAAGATTATAG
1 TAAGTTGTGAAAGACTATAG
50053211 TAAGTTG-GAAA
1 TAAGTTGTGAAA
50053222 TTTGGTATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.37, C:0.02, G:0.27, T:0.33
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATAG
Found at i:50055249 original size:46 final size:45
Alignment explanation
Indices: 50055097--50055249 Score: 128
Period size: 46 Copynumber: 3.3 Consensus size: 45
50055087 ATTGTGAGCT
* * * ** * *
50055097 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGA-AGTC
* * **
50055143 AGTGTAAGACCATGTCTAGGACATGGCATCTGCATTGAGAC-AAGTGC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCAAGACGAAGT-C
*
50055190 TAGTGTAAAACATGTCTAGGACATGCATCGGCCTCAAGACGTAAGTC
1 -AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACG-AAGTC
*
50055237 GGTGTAAGACATG
1 AGTGTAAGACATG
50055250 CATCGGCTAC
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
46 34 0.41
47 30 0.36
48 19 0.23
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGAAGTC
Found at i:50058631 original size:21 final size:21
Alignment explanation
Indices: 50058601--50058643 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
50058591 ACAACACAAC
* *
50058601 ATAGCTCCAATTCAAGCATTT
1 ATAGCACCAATTAAAGCATTT
50058622 ATAGCACCAATTAAAGCATTT
1 ATAGCACCAATTAAAGCATTT
50058643 A
1 A
50058644 CATACAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAGCACCAATTAAAGCATTT
Found at i:50073409 original size:33 final size:34
Alignment explanation
Indices: 50073340--50073411 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 34
50073330 AATAGTGCAT
* * * *
50073340 ACAGTAACGGTCTGGGCTTGAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATTCAGTA
50073374 ACAGT-ACAGTCTGGGCCTAAGCCCTATGT-AGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTAT-TCAGTA
50073407 ACAGT
1 ACAGT
50073412 GTGGGCCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATTCAGTA
Found at i:50073818 original size:28 final size:28
Alignment explanation
Indices: 50073769--50073828 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
50073759 CTACCTCTCA
* * *
50073769 GGTATAATAGTCATTTCCACCCATTAGG
1 GGTAGAATAGTAATTTCCACCCATCAGG
** *
50073797 GGTAGAATAGTAATTTTTACCCCTCAGG
1 GGTAGAATAGTAATTTCCACCCATCAGG
50073825 GGTA
1 GGTA
50073829 TTTTGGTCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (28 bp):
GGTAGAATAGTAATTTCCACCCATCAGG
Found at i:50076899 original size:33 final size:34
Alignment explanation
Indices: 50076830--50076901 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 34
50076820 AATAGTGCAT
* * * *
50076830 ACAGTAACGGTCTGGGCTTGAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATTCAGTA
50076864 ACAGT-ACAGTCTGGGCCTAAGCCCTATGT-AGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTAT-TCAGTA
50076897 ACAGT
1 ACAGT
50076902 GTGGGCCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATTCAGTA
Found at i:50077308 original size:28 final size:28
Alignment explanation
Indices: 50077259--50077318 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
50077249 CTACCTCTCA
* * *
50077259 GGTATAATAGTCATTTCCACCCATTAGG
1 GGTAGAATAGTAATTTCCACCCATCAGG
** *
50077287 GGTAGAATAGTAATTTTTACCCCTCAGG
1 GGTAGAATAGTAATTTCCACCCATCAGG
50077315 GGTA
1 GGTA
50077319 TTTTGGTCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (28 bp):
GGTAGAATAGTAATTTCCACCCATCAGG
Found at i:50089011 original size:20 final size:20
Alignment explanation
Indices: 50088973--50089012 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50088963 TGTAGCCAAG
* *
50088973 GCTATCTGGTACGCATAGTA
1 GCTATCCGGTACACATAGTA
*
50088993 GCTATCCGGTACACGTAGTA
1 GCTATCCGGTACACATAGTA
50089013 ACCTGCACTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (20 bp):
GCTATCCGGTACACATAGTA
Found at i:50089132 original size:49 final size:50
Alignment explanation
Indices: 50089000--50089132 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
50088990 GTAGCTATCC
* *
50089000 GGTACACGTAGTAACCTGCACTTAGTACTACACATGTGACCTAACCAATT
1 GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCAATT
* * *
50089050 GATACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA-TAATCT
1 GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCAAT-T
* *
50089099 GGTACATGTAGCAGCCTGCACTTAGTACTACACA
1 GGTACACGTAGTAGCCTGCACTTAGTACTACACA
50089133 CATGACCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
48 3 0.04
49 33 0.45
50 37 0.51
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
GGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCAATT
Found at i:50092622 original size:42 final size:42
Alignment explanation
Indices: 50092563--50092648 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
50092553 CAAGAAAATG
* *
50092563 GTTTTTCTAACCCAACACTATCAATAATAAATTGAATCCTAA
1 GTTTTTCTAAACCAACACTATCAATAATAAAATGAATCCTAA
50092605 GTTTTTCTAAACCAACACTATCAATAATAAAATGAATCCTAA
1 GTTTTTCTAAACCAACACTATCAATAATAAAATGAATCCTAA
50092647 GT
1 GT
50092649 ATACCCGATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.33
Consensus pattern (42 bp):
GTTTTTCTAAACCAACACTATCAATAATAAAATGAATCCTAA
Found at i:50098364 original size:27 final size:26
Alignment explanation
Indices: 50098333--50098510 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
50098323 TAAATTGTAC
50098333 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
50098360 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
50098386 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
50098414 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
50098442 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
50098469 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
50098496 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50098511 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:50098449 original size:82 final size:81
Alignment explanation
Indices: 50098334--50098489 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50098324 AAATTGTACA
* *
50098334 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50098398 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
50098415 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50098480 TGCGAGTTGA
65 TGCGAATTGA
50098490 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50098501 original size:82 final size:81
Alignment explanation
Indices: 50098330--50098510 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
50098320 GATTAAATTG
* *
50098330 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50098395 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
50098411 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50098475 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50098493 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50098511 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50098521 original size:27 final size:27
Alignment explanation
Indices: 50098415--50098521 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
50098405 TGACCATGCG
* * * *
50098415 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
50098443 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
50098470 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
50098497 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
50098522 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:50106354 original size:27 final size:27
Alignment explanation
Indices: 50106315--50106366 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
50106305 TAAACCCCTT
*
50106315 AAATACCTAAGGGGAATGAGACCTATG
1 AAATACCTAAGGGGAATGAAACCTATG
*
50106342 AAATACCTGAGGGGAATGAAACCTA
1 AAATACCTAAGGGGAATGAAACCTA
50106367 AGACGGATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.17
Consensus pattern (27 bp):
AAATACCTAAGGGGAATGAAACCTATG
Found at i:50106449 original size:12 final size:13
Alignment explanation
Indices: 50106413--50106450 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
50106403 AAATATTTTA
50106413 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
50106426 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
50106440 CTTG-TCTTAAT
1 CTTGTTCTTAAT
50106451 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:50114758 original size:12 final size:13
Alignment explanation
Indices: 50114722--50114759 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
50114712 AAATATTTTA
50114722 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
50114735 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
50114749 CTTG-TCTTAAT
1 CTTGTTCTTAAT
50114760 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:50118312 original size:13 final size:14
Alignment explanation
Indices: 50118288--50118316 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
50118278 CCTCTTTGGA
50118288 TTGTATTTTTAATT
1 TTGTATTTTTAATT
50118302 TTGTA-TTTTAATT
1 TTGTATTTTTAATT
50118315 TT
1 TT
50118317 CTTTGGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (14 bp):
TTGTATTTTTAATT
Found at i:50130036 original size:22 final size:22
Alignment explanation
Indices: 50130008--50130056 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
50129998 GTAAATACGT
50130008 TTGGCACACAACCATA-ATCAGG
1 TTGGCACACAACCATATAT-AGG
* *
50130030 TTGGCACAGAGCCATATATAGG
1 TTGGCACACAACCATATATAGG
50130052 TTGGC
1 TTGGC
50130057 GCAAAGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (22 bp):
TTGGCACACAACCATATATAGG
Found at i:50130332 original size:41 final size:41
Alignment explanation
Indices: 50130216--50130324 Score: 200
Period size: 41 Copynumber: 2.7 Consensus size: 41
50130206 AAAGCCACCA
*
50130216 GTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
*
50130257 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
50130298 GTGGATCCACGGTCGTCAAGCAACCAT
1 GTGGATCCACGGTCGTCAAGCAACCAT
50130325 ATGATCCTCA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
Found at i:50130577 original size:29 final size:29
Alignment explanation
Indices: 50130544--50130601 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
50130534 TCTTTTTACC
*
50130544 TATTAAGGGTATTTTAGTCATTTCACCCT
1 TATTAAGGGTATTTCAGTCATTTCACCCT
50130573 TATTAAGGGTATTTCAGTCATTTCACCCT
1 TATTAAGGGTATTTCAGTCATTTCACCCT
50130602 ACAAGGGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (29 bp):
TATTAAGGGTATTTCAGTCATTTCACCCT
Found at i:50130614 original size:29 final size:29
Alignment explanation
Indices: 50130548--50130609 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
50130538 TTTACCTATT
* *
50130548 AAGGGTATTTTAGTCATTTCACCCTTATT
1 AAGGGTATTTCAGTCATTTCACCCTTATC
50130577 AAGGGTATTTCAGTCATTTCACCC-TA-C
1 AAGGGTATTTCAGTCATTTCACCCTTATC
50130604 AAGGGT
1 AAGGGT
50130610 GTATTGGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 6 0.19
28 2 0.06
29 23 0.74
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (29 bp):
AAGGGTATTTCAGTCATTTCACCCTTATC
Found at i:50130705 original size:27 final size:26
Alignment explanation
Indices: 50130661--50130868 Score: 130
Period size: 27 Copynumber: 7.7 Consensus size: 26
50130651 GCAAACCAAT
*
50130661 GGTATTTTTGTAATTTTTAAAAGTCAAT
1 GGTATTTTTGTAA-TTTTAAAA-TCAAG
* *
50130689 GGTATTTTTGTAATTTTGTAAATCAGG
1 GGTATTTTTGTAATTTT-AAAATCAAG
* * *
50130716 GGTATTTCTGTAATTTTCCAAATTAAG
1 GGTATTTTTGTAATTTT-AAAATCAAG
** * *
50130743 GGTATTTCAGTAATTTTTCAAATCAGG
1 GGTATTTTTGTAA-TTTTAAAATCAAG
* * * * *
50130770 GGCATTATGGTAATTTTACAATTCGAG
1 GGTATTTTTGTAATTTTA-AAATCAAG
**
50130797 GGTA-TTTTGTTAATTTTACAGGTCAAG
1 GGTATTTTTG-TAATTTTA-AAATCAAG
** * * *
50130824 GGTATTTCGGTAATTTTTCAAGTCAAT
1 GGTATTTTTGTAA-TTTTAAAATCAAG
50130851 GGTATTTTTGTAATTTTA
1 GGTATTTTTGTAATTTTA
50130869 CAAACCAGGA
Statistics
Matches: 141, Mismatches: 33, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
26 11 0.08
27 103 0.73
28 27 0.19
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.46
Consensus pattern (26 bp):
GGTATTTTTGTAATTTTAAAATCAAG
Found at i:50130890 original size:27 final size:27
Alignment explanation
Indices: 50130860--50130918 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
50130850 TGGTATTTTT
*
50130860 GTAATTTTA-CAAACCAGGAGCATTTAA
1 GTAATTCTATCAAACCAGG-GCATTTAA
** *
50130887 GTAATTCTATCCTACCAGGGCATTTTA
1 GTAATTCTATCAAACCAGGGCATTTAA
50130914 GTAAT
1 GTAAT
50130919 ATTAGCCTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (27 bp):
GTAATTCTATCAAACCAGGGCATTTAA
Found at i:50130891 original size:54 final size:54
Alignment explanation
Indices: 50130670--50130892 Score: 162
Period size: 54 Copynumber: 4.1 Consensus size: 54
50130660 TGGTATTTTT
* * ** * * **
50130670 GTAATTTTTAAAAGTCAATGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTCT
1 GTAATTTTT-CAAGTCAAGGGTATTTTTGTAATTTTACAAACCAGGGGCATTTAG
* * * ** * *
50130725 GTAATTTTCCAAATTAAGGGTATTTCAGTAATTTTTCAAATCAGGGGCA-TTATG
1 GTAATTTTTCAAGTCAAGGGTATTTTTGTAATTTTACAAACCAGGGGCATTTA-G
* * * *** * * *
50130779 GTAATTTTACAATTCGAGGGTA-TTTTGTTAATTTTACAGGTCAAGGGTATTTCG
1 GTAATTTTTCAAGTCAAGGGTATTTTTG-TAATTTTACAAACCAGGGGCATTTAG
* * *
50130833 GTAATTTTTCAAGTCAATGGTATTTTTGTAATTTTACAAACCAGGAGCATTTAA
1 GTAATTTTTCAAGTCAAGGGTATTTTTGTAATTTTACAAACCAGGGGCATTTAG
50130887 GTAATT
1 GTAATT
50130893 CTATCCTACC
Statistics
Matches: 128, Mismatches: 36, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
53 5 0.04
54 108 0.84
55 15 0.12
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (54 bp):
GTAATTTTTCAAGTCAAGGGTATTTTTGTAATTTTACAAACCAGGGGCATTTAG
Found at i:50130892 original size:81 final size:79
Alignment explanation
Indices: 50130623--50130877 Score: 222
Period size: 81 Copynumber: 3.1 Consensus size: 79
50130613 TTGGTAAATC
* * * * * * ** *
50130623 TACAAACCAAAGGTATTTCGATAAATTTGCAAACCAATGGTATTTTTGTAATTTTTAAAAGTCAA
1 TACAAACC-AGGGTATTTTG-TAATTTTACAAATCAAGGGTATTTCAGTAATTTTT-CAAGTCAA
50130688 TGGTATTTTTGTAATTT
63 TGGTATTTTTGTAATTT
** * * * * **
50130705 TGTAAATCAGGGGTATTTCTGTAATTTTCCAAATTAAGGGTATTTCAGTAATTTTTCAAATCAGG
1 TACAAACCA-GGGTATTT-TGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTTCAAGTCAAT
* * *
50130770 GGCATTATGGTAATTT
64 GGTATTTTTGTAATTT
* * ** *
50130786 TACAATTCGAGGGTATTTTGTTAATTTTACAGGTCAAGGGTATTTCGGTAATTTTTCAAGTCAAT
1 TACAA-ACCAGGGTATTTTG-TAATTTTACAAATCAAGGGTATTTCAGTAATTTTTCAAGTCAAT
50130851 GGTATTTTTGTAATTT
64 GGTATTTTTGTAATTT
50130867 TACAAACCAGG
1 TACAAACCAGG
50130878 AGCATTTAAG
Statistics
Matches: 132, Mismatches: 37, Indels: 10
0.74 0.21 0.06
Matches are distributed among these distances:
80 6 0.05
81 84 0.64
82 41 0.31
83 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (79 bp):
TACAAACCAGGGTATTTTGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTTCAAGTCAATGG
TATTTTTGTAATTT
Found at i:50130927 original size:27 final size:28
Alignment explanation
Indices: 50130872--50130928 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
50130862 AATTTTACAA
*
50130872 ACCAGGAGCATTTAAGTAATTCTATCCT
1 ACCAGGAGCATTTAAGTAATTCTAGCCT
*
50130900 ACCAGG-GCATTTTAGTAATAT-TAGCCT
1 ACCAGGAGCATTTAAGTAAT-TCTAGCCT
50130927 AC
1 AC
50130929 AGATATGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (28 bp):
ACCAGGAGCATTTAAGTAATTCTAGCCT
Found at i:50137180 original size:32 final size:32
Alignment explanation
Indices: 50137134--50137209 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 32
50137124 AAAATGCATA
*
50137134 AAACCATATGTTAGATGGGCATTTAAACCAATCT
1 AAACCA-A-GTTAGATAGGCATTTAAACCAATCT
50137168 AAACCAAGTTAGATAGGCATTTAAACCAATCT
1 AAACCAAGTTAGATAGGCATTTAAACCAATCT
50137200 AAACCAAGTT
1 AAACCAAGTT
50137210 CAATTCATGC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
32 34 0.83
33 1 0.02
34 6 0.15
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (32 bp):
AAACCAAGTTAGATAGGCATTTAAACCAATCT
Found at i:50138893 original size:16 final size:16
Alignment explanation
Indices: 50138872--50138903 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50138862 AGTGTAACGC
*
50138872 CCCAAAAATCCTGAAA
1 CCCAAAAATCCCGAAA
50138888 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
50138904 TCTTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:50140421 original size:28 final size:29
Alignment explanation
Indices: 50140381--50140499 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
50140371 GTGAGCATGA
* * *
50140381 ATATGAATGTGA-TTAGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
50140409 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
50140438 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
50140467 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
50140495 ATATA
1 ATATA
50140500 CAGGTATGTG
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 29 0.37
29 49 0.63
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:50140490 original size:57 final size:58
Alignment explanation
Indices: 50140396--50140504 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
50140386 AATGTGATTA
* *
50140396 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCATATACAGGTGATTTG
* * *
50140454 GGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCATATACAGGT
1 GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCATATACAGGT
50140505 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (58 bp):
GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCATATACAGGTGATTTG
Found at i:50142270 original size:19 final size:20
Alignment explanation
Indices: 50142226--50142271 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
50142216 TACCAACATG
50142226 TCACCTTCATTTTAGGTACT
1 TCACCTTCATTTTAGGTACT
* *
50142246 TCACCTTCGTTTTAGGTGC-
1 TCACCTTCATTTTAGGTACT
50142265 TCACCTT
1 TCACCTT
50142272 ATCCACTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.43
Consensus pattern (20 bp):
TCACCTTCATTTTAGGTACT
Found at i:50142789 original size:21 final size:21
Alignment explanation
Indices: 50142765--50142830 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
50142755 TATAAATAAC
50142765 ATTAAATTACTTAAAATGACA
1 ATTAAATTACTTAAAATGACA
** * * *
50142786 ATTATGTTAC-TACATTTACA
1 ATTAAATTACTTAAAATGACA
*
50142806 CA-TAAATTACTTAAAATGAAA
1 -ATTAAATTACTTAAAATGACA
50142827 ATTA
1 ATTA
50142831 TGTTACTACA
Statistics
Matches: 31, Mismatches: 11, Indels: 6
0.65 0.23 0.12
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (21 bp):
ATTAAATTACTTAAAATGACA
Found at i:50142824 original size:41 final size:41
Alignment explanation
Indices: 50142767--50142847 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
50142757 TAAATAACAT
*
50142767 TAAATTACTTAAAATGACAATTATGTTACTACATTTACACA
1 TAAATTACTTAAAATGAAAATTATGTTACTACATTTACACA
50142808 TAAATTACTTAAAATGAAAATTATGTTACTACATTTACAC
1 TAAATTACTTAAAATGAAAATTATGTTACTACATTTACAC
50142848 CTGAACTTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (41 bp):
TAAATTACTTAAAATGAAAATTATGTTACTACATTTACACA
Found at i:50145402 original size:48 final size:48
Alignment explanation
Indices: 50145326--50145610 Score: 311
Period size: 48 Copynumber: 5.9 Consensus size: 48
50145316 AAAGGGTAAG
* * *
50145326 ATGCTGATGCCATG-TCTCAGACATGGTCTTACACTAGCTCTCATATAA
1 ATGCCGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCACATATAA
* **
50145374 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAA
* * * * * *
50145422 AGGACGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAA
* * * **
50145470 ATGCCGATGCCATGTTTCAAACATGGTCTTACATTGGCTCACATATCG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAA
* * * * * *
50145518 AGGCTGATGCCATGCTCCAGACATGGACTTACACTAGCTCTCATATAA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAA
* * * *
50145566 ATGCCGATGTCATGTTCCAAATATGGTCTTTCACTGGCTCACATA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
50145611 ACCCTAGTAT
Statistics
Matches: 189, Mismatches: 47, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
48 187 0.99
49 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAA
Found at i:50145495 original size:96 final size:95
Alignment explanation
Indices: 50145328--50145610 Score: 451
Period size: 96 Copynumber: 2.9 Consensus size: 95
50145318 AGGGTAAGAT
*
50145328 GCTGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCTGATGCCAT-TCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
50145393 AACATGGTCTTACACTGGCTCACATATCGAG
65 AACATGGTCTTACACTGGCTCACATATCGAG
*
50145424 GAC-GATGCCATATCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTTC
1 G-CTGATGCCAT-TCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCC
*
50145488 AAACATGGTCTTACATTGGCTCACATATCGAG
64 AAACATGGTCTTACACTGGCTCACATATCGAG
* * *
50145520 GCTGATGCCATGCTCCAGACATGGACTTACACTAGCTCTCATATAAATGCCGATGTCATGTTCCA
1 GCTGATGCCATTC-CCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
* *
50145585 AATATGGTCTTTCACTGGCTCACATA
65 AACATGGTCTTACACTGGCTCACATA
50145611 ACCCTAGTAT
Statistics
Matches: 173, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
95 2 0.01
96 170 0.98
97 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (95 bp):
GCTGATGCCATTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCACATATCGAG
Found at i:50147407 original size:20 final size:19
Alignment explanation
Indices: 50147381--50147436 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 19
50147371 ATTTTGAAAT
*
50147381 TTTTTTATAATATATTTAG
1 TTTTTTATAATATATTTAA
50147400 TATTTTTATAA-AT-TTTAA
1 T-TTTTTATAATATATTTAA
*
50147418 TTATTTTATAATCTATTTA
1 TT-TTTTATAATATATTTA
50147437 TTTGTTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 1 0.03
18 13 0.42
19 4 0.13
20 13 0.42
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTTTATAATATATTTAA
Found at i:50151715 original size:93 final size:93
Alignment explanation
Indices: 50151603--50151960 Score: 682
Period size: 93 Copynumber: 3.8 Consensus size: 93
50151593 CGCCCATAAG
* *
50151603 CGAACTCGGACTCAACTCAACGAGCT-CGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
50151667 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
50151696 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50151761 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
50151789 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50151854 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
50151882 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50151947 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50151961 TCAACCATCC
Statistics
Matches: 262, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
92 1 0.00
93 261 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTACGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50151718 original size:47 final size:49
Alignment explanation
Indices: 50151596--50151960 Score: 364
Period size: 46 Copynumber: 7.8 Consensus size: 49
50151586 TGTAACCCGC
* * *
50151596 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
50151642 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* * *
50151692 -C-TCA-CGAACTCGGACTCAACTCAACGAGTACGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
50151735 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* * *
50151785 -C-TCA-CGAACTCGGACTCAACTCAACGAGTACGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
50151828 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* * *
50151878 -C-TCA-CGAACTCGGACTCAACTCAACGAGTACGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
50151921 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
50151961 TCAACCATCC
Statistics
Matches: 262, Mismatches: 27, Indels: 57
0.76 0.08 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
44 6 0.02
45 6 0.02
46 118 0.45
47 84 0.32
48 7 0.03
49 6 0.02
50 11 0.04
51 6 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:50155823 original size:44 final size:44
Alignment explanation
Indices: 50155760--50155911 Score: 229
Period size: 44 Copynumber: 3.5 Consensus size: 44
50155750 ATACTAATCA
50155760 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCG
*
50155804 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACTATTCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG
* *
50155849 GGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGATATCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCG
50155893 GG--TTTCGAGCCTAGCAGGC
1 GGCCTTT-GAGCCTAGCAGGC
50155912 AAAATACCGG
Statistics
Matches: 99, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
42 2 0.02
43 14 0.14
44 43 0.43
45 39 0.39
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (44 bp):
GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCG
Found at i:50158058 original size:28 final size:28
Alignment explanation
Indices: 50158018--50158088 Score: 133
Period size: 28 Copynumber: 2.5 Consensus size: 28
50158008 GAATAAGTAA
50158018 GAGCACTATGTGTGCGGGCTTTCAAATC
1 GAGCACTATGTGTGCGGGCTTTCAAATC
50158046 GAGCACTATGTGTGCGGGCTTTCAAATC
1 GAGCACTATGTGTGCGGGCTTTCAAATC
*
50158074 GAGCACTAAGTGTGC
1 GAGCACTATGTGTGC
50158089 AATGTTGATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (28 bp):
GAGCACTATGTGTGCGGGCTTTCAAATC
Found at i:50159916 original size:7 final size:7
Alignment explanation
Indices: 50159906--50159930 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50159896 ATCATTTCCT
50159906 TTTTCTA
1 TTTTCTA
50159913 TTTTCTA
1 TTTTCTA
50159920 TTTTCTA
1 TTTTCTA
50159927 TTTT
1 TTTT
50159931 AGTCAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTA
Found at i:50166392 original size:50 final size:49
Alignment explanation
Indices: 50166269--50166532 Score: 209
Period size: 46 Copynumber: 5.6 Consensus size: 49
50166259 GTAAAGTGCT
** *
50166269 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTACGAGGCC
* *
50166318 GATGCCATGTCCCAGACATGGTCTTACACTAACTCTCA-CATAAC-AGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCATC-T-ACGAG-GCC
* *
50166368 GATGCCATGTCCCAGACATGGTCTTACATTGAC-A-CATCT-CGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTACG-AGGCC
* ** * *
50166414 GATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACGTCT-CGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTAT-CATCTACGAGGCC
* * *
50166460 GATG-TATGTCCCAGACAT-GTCTTACACTAGCACT-T-GTCT-CAATGG-C
1 GATGCCATGTCCCAGACATGGTCTTACACTA--ACTATCATCTACGA-GGCC
50166506 GATGCCATGTCCCAGACATGGTCTTAC
1 GATGCCATGTCCCAGACATGGTCTTAC
50166533 TCTGGCTTTC
Statistics
Matches: 179, Mismatches: 21, Indels: 31
0.77 0.09 0.13
Matches are distributed among these distances:
44 10 0.06
45 15 0.08
46 51 0.28
47 15 0.08
48 15 0.08
49 39 0.22
50 34 0.19
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTACGAGGCC
Found at i:50166499 original size:46 final size:45
Alignment explanation
Indices: 50166269--50166581 Score: 158
Period size: 46 Copynumber: 6.6 Consensus size: 45
50166259 GTAAAGTGCT
* *
50166269 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TCTTCGA-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACT-T-AGTC-TCAATGG-C
* * ** * *
50166318 GATGCCATGTCCCAGACATGGTCTTACACTAACTCTCACATAACAGTGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACT-T-A-GTCTCAATGGC
* ** * *
50166368 GATGCCATGTCCCAGACATGGTCTTACATTGACACA-TCTC-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTTAGTCTCAAT-GGC
* * *
50166414 GATGCATGTCCCAGACATGTCTTATACTGGCTTACGTCTCGA-GGC
1 GATGCATGTCCCAGACATGTCTTACACTGACTTA-GTCTCAATGGC
*
50166459 TGATGTATGTCCCAGACATGTCTTACACTAGCACTT-GTCTCAATGGC
1 -GATGCATGTCCCAGACATGTCTTACACT-G-ACTTAGTCTCAATGGC
* *
50166506 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTT--TCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTTAGTC-TCAA--TGG-C
* *
50166554 TAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
50166582 AGCTCACACA
Statistics
Matches: 215, Mismatches: 32, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
44 11 0.05
45 22 0.10
46 61 0.28
47 35 0.16
48 16 0.07
49 35 0.16
50 33 0.15
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTTAGTCTCAATGGC
Found at i:50166573 original size:140 final size:142
Alignment explanation
Indices: 50166274--50166581 Score: 346
Period size: 140 Copynumber: 2.2 Consensus size: 142
50166264 GTGCTGATGC
50166274 CATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTTCGAGGCCGATGCCATGTCCCAGACATGG
* *
50166339 TCTTACACTAACTCTCACATAACAGTGTCGATGCCATGTCCCAGACATGGTCTTACATTGACACA
65 TCTTACACTAACTCTCACAT-ACAATGGCGATGCCATGTCCCAGACATGGTCTTACATTGACACA
* *
50166404 TCTCGTAGCCGATG
129 TATCGTAGCCGAAG
* * * *
50166418 CATGTCCCAGACATGTCTTATACTGGCT-TACGTC-TCGAGGCTGATG-TATGTCCCAGACAT-G
1 CATGTCCCAGACATGTCTTACACTGGCTAT-CATCTTCGAGGCCGATGCCATGTCCCAGACATGG
** *
50166479 TCTTACACTAGCACT-TGTC-T-CAATGGCGATGCCATGTCCCAGACATGGTCTTAC-TCTGGCT
65 TCTTACACTA--ACTCTCACATACAATGGCGATGCCATGTCCCAGACATGGTCTTACAT-TGAC-
* * *
50166540 TTCATAAT-GTGGCCTAAG
126 -ACAT-ATCGTAGCCGAAG
50166558 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
50166582 AGCTCACACA
Statistics
Matches: 142, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
137 1 0.01
138 35 0.25
140 45 0.32
141 16 0.11
142 15 0.11
143 16 0.11
144 14 0.10
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (142 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATCTTCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACTAACTCTCACATACAATGGCGATGCCATGTCCCAGACATGGTCTTACATTGACACATA
TCGTAGCCGAAG
Found at i:50166799 original size:15 final size:15
Alignment explanation
Indices: 50166779--50166809 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50166769 AACTTACCTC
50166779 GGATTTCAAAATGTA
1 GGATTTCAAAATGTA
50166794 GGATTTCAAAATGTA
1 GGATTTCAAAATGTA
50166809 G
1 G
50166810 CGACTATACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (15 bp):
GGATTTCAAAATGTA
Found at i:50166980 original size:30 final size:30
Alignment explanation
Indices: 50166940--50166996 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
50166930 AATTCACATT
*
50166940 TTTGGTAAAATGACCATTTTACCCCTAGAC
1 TTTGGCAAAATGACCATTTTACCCCTAGAC
50166970 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
50166997 TGCCCGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:50168923 original size:49 final size:48
Alignment explanation
Indices: 50168819--50168951 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 48
50168809 GCACATCAAA
* *
50168819 GTCGATGCCATGTCTCAGACAGGTCTTACATTGACTTTCATATATTGAG
1 GTCGATGCCATGTCT-AGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * *
50168868 GCCGATGCCGTGTCGTAGACAGGTCTTACACTGGCTTTCATCTGTCG-G
1 GTCGATGCCATGTC-TAGACAGGTCTTACACTGACTTTCATATATCGAG
* *
50168916 TGTCGATGTCATGTCCCAGACAGGTCTTACACTGAC
1 -GTCGATGCCATGT-CTAGACAGGTCTTACACTGAC
50168952 GCACAACAAG
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 66 0.96
50 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (48 bp):
GTCGATGCCATGTCTAGACAGGTCTTACACTGACTTTCATATATCGAG
Found at i:50170636 original size:66 final size:66
Alignment explanation
Indices: 50170529--50170662 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
50170519 TTGATATTTG
50170529 ATTTTCATGTTAAACATGCCAACAATGATAAACTGAGATATGATTTGTATGTTAAACATGCTGAC
1 ATTTTCATGTTAAACATGCCAACAATGATAAACTGAGATATGATTTGTATGTTAAACATGCTGAC
50170594 T
66 T
*
50170595 ATTTTCATGTTAAACATGCCAACAATGATAAACTGATATATGATTTGTATGTTAAACATGCTGAC
1 ATTTTCATGTTAAACATGCCAACAATGATAAACTGAGATATGATTTGTATGTTAAACATGCTGAC
50170660 T
66 T
50170661 AT
1 AT
50170663 GTTGATCTTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (66 bp):
ATTTTCATGTTAAACATGCCAACAATGATAAACTGAGATATGATTTGTATGTTAAACATGCTGAC
T
Found at i:50170865 original size:24 final size:24
Alignment explanation
Indices: 50170787--50170879 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
50170777 TACTGAAAAA
50170787 ATTGAGTGGCTT-ATCCACAACGAT
1 ATTGAGTGGCTTGA-CCACAACGAT
* *
50170811 A-TGAGTGGCTTGTCCATAAC-ACT
1 ATTGAGTGGCTTGACCACAACGA-T
* *
50170834 AACT-AGTGGCTTGACCATAACGAT
1 -ATTGAGTGGCTTGACCACAACGAT
*
50170858 ATTGAGTGGCTTGGCCACAACG
1 ATTGAGTGGCTTGACCACAACG
50170880 TGCAGTGTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
22 1 0.02
23 19 0.33
24 35 0.61
25 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
ATTGAGTGGCTTGACCACAACGAT
Found at i:50172577 original size:24 final size:24
Alignment explanation
Indices: 50172532--50172577 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
50172522 CCATTTATTT
* **
50172532 ATTTTGAAAATATATTCAATAAGA
1 ATTTTAAAAATATAAACAATAAGA
*
50172556 ATTTTAAAAATATAAACTATAA
1 ATTTTAAAAATATAAACAATAA
50172578 CCAATAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (24 bp):
ATTTTAAAAATATAAACAATAAGA
Found at i:50173191 original size:51 final size:51
Alignment explanation
Indices: 50173114--50173312 Score: 285
Period size: 51 Copynumber: 3.9 Consensus size: 51
50173104 CGGATACATG
* * *
50173114 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAACTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTATATTCACAAA
* *
50173165 ATGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATACTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
* * *
50173216 GTGG-CTTAGACATAGTATCACACTTGTGTCTAAAGCTATTATATTCACAAA
1 GTGGCCTT-CACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
*
50173267 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
50173313 CTAAGGTTCA
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
50 4 0.03
51 124 0.95
52 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
Found at i:50173380 original size:24 final size:24
Alignment explanation
Indices: 50173348--50173415 Score: 118
Period size: 24 Copynumber: 2.8 Consensus size: 24
50173338 ACTTAGCACA
*
50173348 ATGCCATGGACTTATGTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
50173372 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
50173396 ATGCCATGGTCTTATTTCAC
1 ATGCCATGGACTTATTTCAC
50173416 ATAGCACAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:50174658 original size:15 final size:15
Alignment explanation
Indices: 50174635--50174712 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
50174625 TTTAGATTGT
50174635 GATTGTGAAACTATA
1 GATTGTGAAACTATA
*
50174650 GATTTTGAAACTATA
1 GATTGTGAAACTATA
* *
50174665 GACTGTGAAACAAATA
1 GATTGTGAAAC-TATA
* * *
50174681 GACTATGAAACTTTA
1 GATTGTGAAACTATA
*
50174696 GATTCTGAAAACTATA
1 GATTGTG-AAACTATA
50174712 G
1 G
50174713 TGAAACTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
15 30 0.59
16 21 0.41
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (15 bp):
GATTGTGAAACTATA
Found at i:50174690 original size:31 final size:30
Alignment explanation
Indices: 50174638--50174697 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
50174628 AGATTGTGAT
* * *
50174638 TGTGAAACTATAGATTTTGAAACTATAGAC
1 TGTGAAACAATAGACTATGAAACTATAGAC
*
50174668 TGTGAAACAAATAGACTATGAAACTTTAGA
1 TGTGAAAC-AATAGACTATGAAACTATAGA
50174698 TTCTGAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (30 bp):
TGTGAAACAATAGACTATGAAACTATAGAC
Found at i:50180112 original size:48 final size:47
Alignment explanation
Indices: 50180050--50180191 Score: 162
Period size: 48 Copynumber: 2.9 Consensus size: 47
50180040 GGAAGTCTTG
*
50180050 CACCCTAAGTGCCAATATCATGGCTCGAAGTCAACTCAATGAATCTCA
1 CACCCGAAGTGCCAATATCATGGCTCGAAG-CAACTCAATGAATCTCA
* * **
50180098 CACCTGAAGTGCCAATATCATGGAC-CAAAGCTAACTCAATGAATCTTG
1 CACCCGAAGTGCCAATATCATGG-CTCGAAGC-AACTCAATGAATCTCA
*
50180146 CACCCGAAGTGCCAATATCATTG-TCCGAAGCCAACTCAATGTAATC
1 CACCCGAAGTGCCAATATCATGGCT-CGAAG-CAACTCAATG-AATC
50180192 CCTAATGACA
Statistics
Matches: 80, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
47 1 0.01
48 73 0.91
49 6 0.08
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
CACCCGAAGTGCCAATATCATGGCTCGAAGCAACTCAATGAATCTCA
Found at i:50186765 original size:34 final size:33
Alignment explanation
Indices: 50186726--50186792 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
50186716 GTGGCAGTAG
*
50186726 CAGTCTGGGCCTGAGCCTATTTTAGTAACAGTGT
1 CAGTCTGGGCCTGAGCCTATTTCAGT-ACAGTGT
*
50186760 CAGTCTGGGCCTTAGCCTATTTCAGTACAGTGT
1 CAGTCTGGGCCTGAGCCTATTTCAGTACAGTGT
50186793 GCAAACAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.33
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCTATTTCAGTACAGTGT
Found at i:50195516 original size:22 final size:22
Alignment explanation
Indices: 50195488--50195540 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
50195478 AGGGTCACAC
*
50195488 GCCCGTGTGGATATAAGGACAG
1 GCCCGTGTGGACATAAGGACAG
*
50195510 GCCCGTGTGGACATAGGGACAG
1 GCCCGTGTGGACATAAGGACAG
50195532 GCCCGTGTG
1 GCCCGTGTG
50195541 CCTTTGGCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.40, T:0.17
Consensus pattern (22 bp):
GCCCGTGTGGACATAAGGACAG
Found at i:50197209 original size:39 final size:40
Alignment explanation
Indices: 50197088--50197310 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
50197078 GCTCCTCGTT
* *
50197088 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
50197128 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
50197168 CAAATGCCTTCGGGA-TTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50197207 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
50197246 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
50197287 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50197311 CATCATTCAA
Statistics
Matches: 161, Mismatches: 13, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.01
39 84 0.52
40 64 0.40
41 11 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50197257 original size:78 final size:80
Alignment explanation
Indices: 50197088--50197303 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 80
50197078 GCTCCTCGTT
*
50197088 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAG
*
50197153 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
50197168 CAAATGCCTTCGGGA-TTAGCTCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* *
50197229 GGAATTAGTATCTCGCA
64 AGAATTAGTAACTCGCA
* * * * *
50197246 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTA
50197304 GCCCGGACAT
Statistics
Matches: 116, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
77 3 0.03
78 44 0.38
79 47 0.41
80 21 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCAG
AATTAGTAACTCGCA
Found at i:50204075 original size:58 final size:58
Alignment explanation
Indices: 50203985--50204099 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
50203975 NNNNNNNNNN
50203985 ACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGAG
1 ACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGAG
*
50204043 ACAGTATGTTAGGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGA
1 ACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGA
50204100 TTCCCTGTTC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
ACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGAG
Found at i:50211773 original size:20 final size:21
Alignment explanation
Indices: 50211737--50211785 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
50211727 ATTTTGATAT
*
50211737 ACATGATTTGATATGATATAC
1 ACATGATATGATATGATATAC
*
50211758 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATAC
50211778 ACATGATA
1 ACATGATA
50211786 AATTCATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATAC
Found at i:50211909 original size:24 final size:25
Alignment explanation
Indices: 50211833--50211902 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
50211823 GAGGAAGTGC
* * *
50211833 AAAAGGGCTATGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
50211858 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
50211883 AAAAGGGCTTTGTCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
50211903 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:50211915 original size:24 final size:25
Alignment explanation
Indices: 50211832--50211915 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
50211822 AGAGGAAGTG
* *
50211832 CAAAAG-GGCTATGCCCTAGTTTAT
1 CAAAAGAGGCTTTGCCCCAGTTTAT
50211856 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
50211881 CAAAA-AGGGCTTTGTCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
50211905 TAAAAGAGGCT
1 CAAAAGAGGCT
50211916 AGGCCTTCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
24 17 0.33
25 35 0.67
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:50212172 original size:31 final size:31
Alignment explanation
Indices: 50212124--50212199 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
50212114 CGTTTACAGT
*
50212124 AAAAGGCTTTGGCCCAGTGATAGGAATAATG
1 AAAAGGCTTTGGCCCAGTGACAGGAATAATG
* * *
50212155 AAAATGCTTCGGCCCAGTGACATGAATAATG
1 AAAAGGCTTTGGCCCAGTGACAGGAATAATG
50212186 AAAAGGCTTTGGCC
1 AAAAGGCTTTGGCC
50212200 TAGTATATGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAAGGCTTTGGCCCAGTGACAGGAATAATG
Found at i:50219830 original size:24 final size:25
Alignment explanation
Indices: 50219759--50219828 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
50219749 AAGGAAGTGC
* * *
50219759 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
50219784 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
50219809 AAAAGAGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
50219829 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:50220109 original size:30 final size:31
Alignment explanation
Indices: 50220050--50220128 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 31
50220040 CGTTTACAGT
* *
50220050 AAAAGGCTTCGGCCCAGTGATAGGAATAATG
1 AAAAGGCTTCGGCCCAGTGACACGAATAATG
*
50220081 AAAAGGCTTCGGCCTAGTG-CACGAATAATG
1 AAAAGGCTTCGGCCCAGTGACACGAATAATG
*
50220111 CAAAGGCTTCGGCCCAGT
1 AAAAGGCTTCGGCCCAGT
50220129 ATTTGTTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 25 0.58
31 18 0.42
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.19
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGACACGAATAATG
Found at i:50222485 original size:29 final size:29
Alignment explanation
Indices: 50222442--50222542 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
50222432 CACTAGGACT
*
50222442 AATCTCATTCATATGGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
* *
50222471 AATCATATTCGTATGGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
* **
50222500 AATCACATTCTTACAGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
50222529 AATCACATTCATAT
1 AATCACATTCATAT
50222543 ACATGCTTTC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.28
Consensus pattern (29 bp):
AATCACATTCATATGGCCCATTAGGCCCA
Found at i:50222785 original size:16 final size:16
Alignment explanation
Indices: 50222766--50222796 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50222756 TGGCTTTTCA
*
50222766 GCATTTCGACTTTTGG
1 GCATTTCAACTTTTGG
50222782 GCATTTCAACTTTTG
1 GCATTTCAACTTTTG
50222797 TCGATCTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (16 bp):
GCATTTCAACTTTTGG
Found at i:50223285 original size:36 final size:36
Alignment explanation
Indices: 50223245--50223319 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
50223235 AAATCGATTG
50223245 AGAGAGAAAAACACTTACACTAGAATCGATCGAAGT
1 AGAGAGAAAAACACTTACACTAGAATCGATCGAAGT
**
50223281 AGAGAGCGAAACACTTACACTAGAATCGATCGAAGT
1 AGAGAGAAAAACACTTACACTAGAATCGATCGAAGT
50223317 AGA
1 AGA
50223320 AAGAGGGAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.16
Consensus pattern (36 bp):
AGAGAGAAAAACACTTACACTAGAATCGATCGAAGT
Found at i:50224113 original size:28 final size:29
Alignment explanation
Indices: 50224076--50224199 Score: 151
Period size: 29 Copynumber: 4.3 Consensus size: 29
50224066 AAGTCTGCAT
* *
50224076 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50224104 TCATTCATATGGCCCATTAGGTCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50224133 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** * *
50224162 ACATTCATACAGCCTATTAGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
50224191 ACATTCATA
1 ACATTCATA
50224200 CACATGCTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 20 0.25
29 61 0.75
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50224434 original size:16 final size:16
Alignment explanation
Indices: 50224409--50224466 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
50224399 GTAGCTAAAC
*
50224409 TTTCGGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
* * *
50224425 TTTCAACTTTTTGGTA
1 TTTCAGCTTTTCGGCA
*
50224441 TTCCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
50224457 TTTCAGCTTT
1 TTTCAGCTTT
50224467 CGCCGATCTA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.12, C:0.22, G:0.17, T:0.48
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:50224605 original size:46 final size:46
Alignment explanation
Indices: 50224538--50224633 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
50224528 CCCTTTACCA
50224538 CGAACCTACAATCGATATCACTCAATGATAACTCACATATACTTAT
1 CGAACCTACAATCGATATCACTCAATGATAACTCACATATACTTAT
50224584 CGAACCTACAATCGATATCACTCAATGATAACTCACATATACTTAT
1 CGAACCTACAATCGATATCACTCAATGATAACTCACATATACTTAT
50224630 CGAA
1 CGAA
50224634 TACTTTACCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.27
Consensus pattern (46 bp):
CGAACCTACAATCGATATCACTCAATGATAACTCACATATACTTAT
Found at i:50224623 original size:22 final size:22
Alignment explanation
Indices: 50224552--50224623 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
50224542 CCTACAATCG
50224552 ATATCACTCAATGATAACTCAC
1 ATATCACTCAATGATAACTCAC
* *
50224574 ATAT-ACT-TATCGA-ACCTACAATC
1 ATATCACTCAAT-GATAACT-C-A-C
50224597 GATATCACTCAATGATAACTCAC
1 -ATATCACTCAATGATAACTCAC
50224620 ATAT
1 ATAT
50224624 ACTTATCGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
20 5 0.13
21 6 0.16
22 9 0.24
23 2 0.05
24 5 0.13
25 6 0.16
26 5 0.13
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (22 bp):
ATATCACTCAATGATAACTCAC
Found at i:50228828 original size:29 final size:29
Alignment explanation
Indices: 50228704--50228827 Score: 160
Period size: 29 Copynumber: 4.3 Consensus size: 29
50228694 AAGTCTGCAT
* * *
50228704 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50228732 TCATTCATATGGCCCATTAGGTCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50228761 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
50228790 ACATTCATACGGCCCATTAGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
50228819 ACATTCATA
1 ACATTCATA
50228828 CACATGCTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 18 0.22
29 65 0.78
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50228908 original size:17 final size:18
Alignment explanation
Indices: 50228886--50228919 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50228876 TTCCTACTAT
50228886 GGCCCA-ATAGCCCATCG
1 GGCCCAGATAGCCCATCG
*
50228903 GGCCCAGTTAGCCCATC
1 GGCCCAGATAGCCCATC
50228920 CTGGCCCGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.41, G:0.24, T:0.15
Consensus pattern (18 bp):
GGCCCAGATAGCCCATCG
Found at i:50234896 original size:27 final size:27
Alignment explanation
Indices: 50234866--50234917 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
50234856 CCCATACTGA
*
50234866 TAAAATGACTATTATACCCCTATGAGG
1 TAAAATGACTAATATACCCCTATGAGG
*
50234893 TAAAATGACTAATATGCCCCTATGA
1 TAAAATGACTAATATACCCCTATGA
50234918 TTTGTATGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
TAAAATGACTAATATACCCCTATGAGG
Found at i:50235227 original size:34 final size:34
Alignment explanation
Indices: 50235189--50235254 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
50235179 CTATTACTGT
50235189 TATTGTAATGGGCTAAAGCCC-ACACTGTTACTAA
1 TATTGTAATGGGCTAAAGCCCTA-ACTGTTACTAA
* *
50235223 TATTGTATTGGGCTAAGGCCCTAACTGTTACT
1 TATTGTAATGGGCTAAAGCCCTAACTGTTACT
50235255 GGACTATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (34 bp):
TATTGTAATGGGCTAAAGCCCTAACTGTTACTAA
Found at i:50236509 original size:34 final size:34
Alignment explanation
Indices: 50236456--50236546 Score: 121
Period size: 34 Copynumber: 2.7 Consensus size: 34
50236446 AACAGTGTTG
* *
50236456 AACAGTCTGGGCCTAAGCCCATGT-CAGTAGCAAT
1 AACAGTGTGGGCCTTAGCCCAT-TACAGTAGCAAT
** *
50236490 GTCAGTGTGGGCCTTAGCCCATTACAGTAGTAAT
1 AACAGTGTGGGCCTTAGCCCATTACAGTAGCAAT
50236524 AACAGTGTGGGCCTTAGCCCATT
1 AACAGTGTGGGCCTTAGCCCATT
50236547 TTAGTACAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
33 1 0.02
34 48 0.98
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (34 bp):
AACAGTGTGGGCCTTAGCCCATTACAGTAGCAAT
Found at i:50239034 original size:46 final size:45
Alignment explanation
Indices: 50238967--50239139 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
50238957 AACCCGCCCC
*
50238967 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGAC-TTCGCATCCA
* * *
50239013 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-TAC-CTAGTTACA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACTTCGC-A--TCCA
*** * *
50239059 TCTCTCGAACTCAAACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGT-GAACTCGAACTCAACTCAACGAGTTCGGAC-TTCGCATCCA
50239106 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
50239140 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 64 0.62
47 31 0.30
49 3 0.03
50 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACTTCGCATCCA
Found at i:50239081 original size:93 final size:93
Alignment explanation
Indices: 50238972--50239140 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
50238962 GCCCCTAAGT
* * * *
50238972 GAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
50239037 CGAGTTCGGATACCTAGTTACATCTCTC
66 CGAGTTCGGATACCTAGTTACATCTCTC
*
50239065 GAACTCAAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
50239130 CGAGTTCGGAT
66 CGAGTTCGGAT
50239141 GCTCAACCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (93 bp):
GAACTCAAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATACCTAGTTACATCTCTC
Found at i:50243244 original size:119 final size:118
Alignment explanation
Indices: 50243056--50243269 Score: 374
Period size: 119 Copynumber: 1.8 Consensus size: 118
50243046 ACGGTATTCC
*
50243056 GTGTAGTATGAACCTATTAAGGATTAGCATAGGTATGTAAATGTATATTATGAGCTTAAATTTGA
1 GTGTAGTATGAACCTATTAAGGATTAGCACAGGTATGTAAATGTATATTATGAGCTTAAATTTGA
50243121 AGAAGTTACAAAGTTTGTATATAAGCTTATTATTGAGTATTCAATAGTATTTT
66 AGAAGTTACAAAGTTTGTATATAAGCTTATTATTGAGTATTCAATAGTATTTT
* * * *
50243174 GTGTATGTATGAACCTGTTAAGGATTGGTACAGGTATGTACATGTATATTATGAGCTTAAATTTG
1 GTGTA-GTATGAACCTATTAAGGATTAGCACAGGTATGTAAATGTATATTATGAGCTTAAATTTG
50243239 AAGAAGTTACAAAGTTTGTATATAAGCTTAT
65 AAGAAGTTACAAAGTTTGTATATAAGCTTAT
50243270 AAATAAGTAG
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
118 5 0.06
119 85 0.94
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.39
Consensus pattern (118 bp):
GTGTAGTATGAACCTATTAAGGATTAGCACAGGTATGTAAATGTATATTATGAGCTTAAATTTGA
AGAAGTTACAAAGTTTGTATATAAGCTTATTATTGAGTATTCAATAGTATTTT
Found at i:50244335 original size:6 final size:6
Alignment explanation
Indices: 50244295--50244394 Score: 62
Period size: 6 Copynumber: 16.3 Consensus size: 6
50244285 AAGAAACATT
* * * *
50244295 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA GTCAGA ATCAG- GTCACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
50244344 ATCAGA ATTAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ACCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
50244393 AT
1 AT
50244395 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:50244348 original size:19 final size:19
Alignment explanation
Indices: 50244321--50244387 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
50244311 AAATGAGAAT
* *
50244321 CAGAGTCAGAATCAGGTCA
1 CAGAATCAGAATCAGGTAA
* *
50244340 CAGAATCAGAATTA--AAA
1 CAGAATCAGAATCAGGTAA
*
50244357 TCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGGTAA
50244377 CAGAATCAGAA
1 CAGAATCAGAA
50244388 CCAGAATGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
17 1 0.03
18 12 0.32
19 22 0.59
20 2 0.05
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:50244359 original size:37 final size:37
Alignment explanation
Indices: 50244304--50244387 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 37
50244294 TATCAGAACT
* * * *
50244304 AGAATCAAAATGAGAATCAGAGTCAGAATCAGGTCAC
1 AGAATCAGAATGAAAATCAGAATCAGAATCAGGTAAC
* *
50244341 AGAATCAGAATTAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATGAAAATCAGAATCAGAATCAGGTAAC
50244378 AGAATCAGAA
1 AGAATCAGAA
50244388 CCAGAATGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATGAAAATCAGAATCAGAATCAGGTAAC
Found at i:50244581 original size:27 final size:26
Alignment explanation
Indices: 50244514--50244648 Score: 119
Period size: 27 Copynumber: 5.0 Consensus size: 26
50244504 CATGGCTACC
* * * *
50244514 AGAACAGATATTGTGACATAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACT
*
50244540 AAATACAGATATTGTGGCAGAGCCACT
1 AGA-ACAGATATTGTGGCAGAGCCACT
* *
50244567 AGAACAGATATTTGTGGCATAGCC-GT
1 AGAACAGATA-TTGTGGCAGAGCCACT
*
50244593 CAGAAACAGAATATTGTGGCAGAGCCACC
1 -AG-AACAG-ATATTGTGGCAGAGCCACT
* *
50244622 AGAATCAGATAATGTGGCAAAGCCACT
1 AGAA-CAGATATTGTGGCAGAGCCACT
50244649 TAACAGAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
26 10 0.11
27 53 0.60
28 22 0.25
29 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACT
Found at i:50244617 original size:55 final size:53
Alignment explanation
Indices: 50244511--50244647 Score: 168
Period size: 55 Copynumber: 2.5 Consensus size: 53
50244501 CGGCATGGCT
* *
50244511 ACCAGAACAGATATTGTGACATAGTCACCAAATACAGATATTGTGGCAGAGCC
1 ACCAGAACAGATATTGTGGCATAGCCACCAAATACAGATATTGTGGCAGAGCC
* **
50244564 ACTAGAACAGATATTTGTGGCATAGCCGTCAGAA-ACAGAATATTGTGGCAGAGCC
1 ACCAGAACAGATA-TTGTGGCATAGCCACCA-AATACAG-ATATTGTGGCAGAGCC
* *
50244619 ACCAGAATCAGATAATGTGGCAAAGCCAC
1 ACCAGAA-CAGATATTGTGGCATAGCCAC
50244648 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 12 0.17
54 17 0.24
55 35 0.50
56 6 0.09
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (53 bp):
ACCAGAACAGATATTGTGGCATAGCCACCAAATACAGATATTGTGGCAGAGCC
Found at i:50244800 original size:27 final size:27
Alignment explanation
Indices: 50244770--50244821 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
50244760 AGTCGTCAAC
*
50244770 AAATATGTTAGGCAC-ATAGCCATAGGT
1 AAATACGTTAGGCACGA-AGCCATAGGT
*
50244797 AAATACGTTTGGCACGAAGCCATAG
1 AAATACGTTAGGCACGAAGCCATAG
50244822 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AAATACGTTAGGCACGAAGCCATAGGT
Found at i:50244853 original size:22 final size:22
Alignment explanation
Indices: 50244805--50244863 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
50244795 GTAAATACGT
*
50244805 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
50244827 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
50244849 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
50244864 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:50245355 original size:81 final size:81
Alignment explanation
Indices: 50245240--50245512 Score: 395
Period size: 81 Copynumber: 3.4 Consensus size: 81
50245230 GGTATCTCGA
* * * * * * *
50245240 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAAGGTATTTCGGTAATACTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCT
50245305 TACAGGGGTATTTTAG
66 TACAGGGGTATTTTAG
*
50245321 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCT
50245386 TACAGGGGGTATTTTAG
66 TACA-GGGGTATTTTAG
* *
50245403 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTTTAC-AGGAGCATTTCAGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGG-GTATTTCAGTAATTCTACC
* *
50245467 TTATAGGGGTATTTTGG
65 TTACAGGGGTATTTTAG
* *
50245484 TAATTCTACCTTACAGGGGTATTTTGGTA
1 TAATTCTACCCTACAGGGGTATTTCGGTA
50245513 CTTTTTCTAA
Statistics
Matches: 175, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
81 101 0.58
82 74 0.42
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCT
TACAGGGGTATTTTAG
Found at i:50245512 original size:27 final size:27
Alignment explanation
Indices: 50245240--50245507 Score: 347
Period size: 27 Copynumber: 9.9 Consensus size: 27
50245230 GGTATCTCGA
50245240 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* ** *
50245267 TATTTCTACCCTACAAAGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
50245294 TAATACTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
50245321 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
50245348 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
50245375 TAATTCTACCTTACAGGGGGTATTTTAG
1 TAATTCTACCCTACA-GGGGTATTTCAG
*
50245403 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
** * *
50245430 TAATTCTACTTTACAGGAGCATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * **
50245457 TAATTCTACCTTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
50245484 TAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
50245508 TGGTACTTTT
Statistics
Matches: 209, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 184 0.88
28 25 0.12
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:50245530 original size:27 final size:27
Alignment explanation
Indices: 50245500--50245570 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
50245490 TACCTTACAG
* *
50245500 GGGTATTTTGGTACTTTTTCTAATCGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
*
50245527 GGGTATTTTGGTAATTTTGCTAATTGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
50245554 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
50245571 GGTAAACTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.20, C:0.06, G:0.25, T:0.49
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCTAATCGA
Found at i:50250484 original size:27 final size:27
Alignment explanation
Indices: 50250419--50250486 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
50250409 ATAGGCTAAT
*
50250419 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATGCCCCTGTAGGGTAGA
* *
50250446 ATTACTAAAATGCCCTTGTAGGGTAGA
1 ATTACTGAAATGCCCCTGTAGGGTAGA
50250473 ATTACTGAAATGCC
1 ATTACTGAAATGCC
50250487 TTTGGTTTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATGCCCCTGTAGGGTAGA
Found at i:50250502 original size:27 final size:27
Alignment explanation
Indices: 50250472--50250844 Score: 120
Period size: 27 Copynumber: 13.9 Consensus size: 27
50250462 TGTAGGGTAG
* *
50250472 AATTACTGAAATGCCTTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
50250499 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
* * *
50250525 AATTACTAAAATATCCTT-GATTAGCAA
1 AATTACTGAAATACCCTTGGTTTA-CAA
** **
50250552 AATTACCAAAATA-CCTCTGGTTTGTAA
1 AATTACTGAAATACCCT-TGGTTTACAA
* * * ***
50250579 AATTAC-CAAAGTACCCCTGATTTGTGA
1 AATTACTGAAA-TACCCTTGGTTTACAA
* * *** **
50250606 AATTACCGAAATACCCTCGACCTGTAA
1 AATTACTGAAATACCCTTGGTTTACAA
**** *
50250633 AATTA-TCGAAATACCCTCAACTTATAA
1 AATTACT-GAAATACCCTTGGTTTACAA
* * **
50250660 AATTA-TCGAAATACCCTCGATTTGTAA
1 AATTACT-GAAATACCCTTGGTTTACAA
** ** **
50250687 AATTACCAAAATACCCTTAATTT-GGA
1 AATTACTGAAATACCCTTGGTTTACAA
* * **
50250713 AATTA-TCAAAATACCCTTGATTTGGAA
1 AATTACT-GAAATACCCTTGGTTTACAA
* * *
50250740 AATTA-TAGAAATACCCCTGATTTAAAA
1 AATTACT-GAAATACCCTTGGTTTACAA
**
50250767 AATTACAAAAATACCCTTGGCCTTTA-AA
1 AATTACTGAAATACCCTTGG--TTTACAA
* * *
50250795 AATTACAGAATTACCATTGGTTT-CTAA
1 AATTACTGAAATACCCTTGGTTTAC-AA
**
50250822 AATTACCAAAATACCCTTGGTTT
1 AATTACTGAAATACCCTTGGTTT
50250845 GTAGATTTAC
Statistics
Matches: 279, Mismatches: 51, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
26 57 0.20
27 191 0.68
28 27 0.10
29 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTTACAA
Found at i:50250524 original size:26 final size:26
Alignment explanation
Indices: 50250472--50250557 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 26
50250462 TGTAGGGTAG
* *
50250472 AATTACTGAAATGCCTTTGGTTTACAA
1 AATTACTG-AATACCCTTGGTTTACAA
50250499 AATTACTGAATACCCTTGGTTTACAA
1 AATTACTGAATACCCTTGGTTTACAA
* * *
50250525 AATTACTAAAATATCCTT-GATTAGCAA
1 AATTACT-GAATACCCTTGGTTTA-CAA
50250552 AATTAC
1 AATTAC
50250558 CAAAATACCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 27 0.52
27 25 0.48
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (26 bp):
AATTACTGAATACCCTTGGTTTACAA
Found at i:50250632 original size:54 final size:53
Alignment explanation
Indices: 50250574--50250729 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 53
50250564 ACCTCTGGTT
* *
50250574 TGTAAAATTACCAAAGTACCCCTGATTTGTGAAATTACCGAAATACCCTCGACC
1 TGTAAAATTACCAAA-TACCCCTAATTTGTGAAATTATCGAAATACCCTCGACC
* * * * **
50250628 TGTAAAATTATCGAAATA-CCCTCAACTTATAAAATTATCGAAATACCCTCGATT
1 TGTAAAATTA-CCAAATACCCCT-AATTTGTGAAATTATCGAAATACCCTCGACC
* *
50250682 TGTAAAATTACCAAAATACCCTTAATTTG-GAAATTATCAAAATACCCT
1 TGTAAAATTACC-AAATACCCCTAATTTGTGAAATTATCGAAATACCCT
50250730 TGATTTGGAA
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
53 22 0.26
54 55 0.65
55 7 0.08
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (53 bp):
TGTAAAATTACCAAATACCCCTAATTTGTGAAATTATCGAAATACCCTCGACC
Found at i:50250635 original size:81 final size:81
Alignment explanation
Indices: 50250550--50250703 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 81
50250540 CTTGATTAGC
*** * *
50250550 AAAATTACCAAAATA-CCTCTGGTTTGTAAAATTA-CCAAAGTACCC-CTGATTTGTGAAATTAC
1 AAAATTACCAAAATACCCTC-AACTTATAAAATTATCCAAA-TACCCTC-GATTTGTAAAATTAC
*
50250612 CGAAATACCCTCGACCTGT
63 CAAAATACCCTCGACCTGT
* * *
50250631 AAAATTATCGAAATACCCTCAACTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTCAACTTATAAAATTATCCAAATACCCTCGATTTGTAAAATTACCAA
50250696 AATACCCT
66 AATACCCT
50250704 TAATTTGGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
81 52 0.85
82 9 0.15
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAACTTATAAAATTATCCAAATACCCTCGATTTGTAAAATTACCAA
AATACCCTCGACCTGT
Found at i:50250752 original size:53 final size:53
Alignment explanation
Indices: 50250598--50250755 Score: 176
Period size: 54 Copynumber: 2.9 Consensus size: 53
50250588 AGTACCCCTG
* ** *
50250598 ATTTGTGAAATTACCGAAATACCCTCGACCTGTAAAATTATCGAAATACCCTCA
1 ATTTG-GAAATTATCGAAATACCCTCGATTTGTAAAATTATAGAAATACCCTCA
* * *
50250652 ACTTAT-AAAATTATCGAAATACCCTCGATTTGTAAAATTACCA-AAATACCCTTA
1 A-TT-TGGAAATTATCGAAATACCCTCGATTTGTAAAATTA-TAGAAATACCCTCA
* * *
50250706 ATTTGGAAATTATCAAAATACCCTTGATTTGGAAAATTATAGAAATACCC
1 ATTTGGAAATTATCGAAATACCCTCGATTTGTAAAATTATAGAAATACCC
50250756 CTGATTTAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 40 0.46
54 42 0.48
55 2 0.02
56 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
ATTTGGAAATTATCGAAATACCCTCGATTTGTAAAATTATAGAAATACCCTCA
Found at i:50250783 original size:26 final size:26
Alignment explanation
Indices: 50250523--50250783 Score: 127
Period size: 27 Copynumber: 9.7 Consensus size: 26
50250513 CTTGGTTTAC
* * * *
50250523 AAAATTACTAAAATATCCTTGATTAGC
1 AAAATTACAAAAATA-CCCTGATTTGG
* * *
50250550 AAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTACAAAAATACC-CTGATTTGG
* *
50250577 AAAATTACCAAAGTACCCCTGATTTGTG
1 AAAATTACAAAAATA-CCCTGATTTG-G
** ** *
50250605 -AAATTACCGAAATACCCTCGACCTGT
1 AAAATTACAAAAATACCCT-GATTTGG
* * * **
50250631 AAAATTATC-GAAATACCCTCAACTTAT
1 AAAATTA-CAAAAATACCCT-GATTTGG
* *
50250658 AAAATTATC-GAAATACCCTCGATTTGT
1 AAAATTA-CAAAAATACCCT-GATTTGG
* *
50250685 AAAATTACCAAAATACCCTTAATTTGG
1 AAAATTACAAAAATACCC-TGATTTGG
50250712 -AAATTATC-AAAATACCCTTGATTTGG
1 AAAATTA-CAAAAATACCC-TGATTTGG
* * **
50250738 AAAATTATAGAAATACCCCTGATTTAA
1 AAAATTACAAAAATA-CCCTGATTTGG
50250765 AAAATTACAAAAATACCCT
1 AAAATTACAAAAATACCCT
50250784 TGGCCTTTAA
Statistics
Matches: 193, Mismatches: 29, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
26 34 0.18
27 152 0.79
28 7 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACAAAAATACCCTGATTTGG
Found at i:50250854 original size:27 final size:27
Alignment explanation
Indices: 50250765--50250859 Score: 77
Period size: 27 Copynumber: 3.5 Consensus size: 27
50250755 CCTGATTTAA
* * *
50250765 AAAATTACAAAAATACCCTTGGCCTTT-A
1 AAAATTACCAAAATACCATTGG--TTTCT
*
50250793 AAAATTA-CAGAATTACCATTGGTTTCT
1 AAAATTACCA-AAATACCATTGGTTTCT
* *
50250820 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCATTGGTTTCT
* *
50250847 AGATTTACCAAAA
1 AAAATTACCAAAA
50250860 CACTCTTGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.05
27 33 0.60
28 19 0.35
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCATTGGTTTCT
Found at i:50253713 original size:49 final size:49
Alignment explanation
Indices: 50253652--50253755 Score: 190
Period size: 49 Copynumber: 2.1 Consensus size: 49
50253642 TATGAAGACA
50253652 TAAGCTAAACTTAGTGATTGCAGTTTAGTCTCAAATAAGGGAATAAAAAT
1 TAAG-TAAACTTAGTGATTGCAGTTTAGTCTCAAATAAGGGAATAAAAAT
*
50253702 TAAGTAAACTTAGTGATTGCAGTTTAGTCTCAAATAAGGGAATAAAACT
1 TAAGTAAACTTAGTGATTGCAGTTTAGTCTCAAATAAGGGAATAAAAAT
50253751 TAAGT
1 TAAGT
50253756 GGTAAAGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 49 0.92
50 4 0.08
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTAAACTTAGTGATTGCAGTTTAGTCTCAAATAAGGGAATAAAAAT
Found at i:50258413 original size:16 final size:16
Alignment explanation
Indices: 50258392--50258424 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50258382 ATAAATTACA
50258392 TAGTGAAACAAATGAT
1 TAGTGAAACAAATGAT
50258408 TAGTGAAACAAATGAT
1 TAGTGAAACAAATGAT
50258424 T
1 T
50258425 TTTATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.27
Consensus pattern (16 bp):
TAGTGAAACAAATGAT
Found at i:50258647 original size:40 final size:40
Alignment explanation
Indices: 50258592--50259406 Score: 1612
Period size: 40 Copynumber: 20.4 Consensus size: 40
50258582 TATGTGCATA
*
50258592 GCATTCGTCCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258632 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258672 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258712 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258752 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258792 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258832 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258872 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258912 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258952 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50258992 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259032 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259072 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259112 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259152 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259192 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259232 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259272 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259312 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
50259352 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
50259392 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
50259407 GTTACGTCCG
Statistics
Matches: 773, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 773 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:50266120 original size:28 final size:29
Alignment explanation
Indices: 50266080--50266135 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
50266070 TTGGCCGAGT
50266080 CTAAGGGGG-AAAAGGGAGCAACCATTTC
1 CTAAGGGGGAAAAAGGGAGCAACCATTTC
50266108 CTAAGGGGGAAAAAGGGAGCAACCATTT
1 CTAAGGGGGAAAAAGGGAGCAACCATTT
50266136 GGTGATTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.38, C:0.16, G:0.32, T:0.14
Consensus pattern (29 bp):
CTAAGGGGGAAAAAGGGAGCAACCATTTC
Found at i:50267202 original size:16 final size:16
Alignment explanation
Indices: 50267181--50267213 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50267171 ATAAATTACA
50267181 TAGTGAAACAAATGAT
1 TAGTGAAACAAATGAT
*
50267197 TAGTGAAACAAGTGAT
1 TAGTGAAACAAATGAT
50267213 T
1 T
50267214 TTTATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (16 bp):
TAGTGAAACAAATGAT
Found at i:50270262 original size:28 final size:26
Alignment explanation
Indices: 50270169--50270280 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
50270159 AGGAAGCGTC
* *
50270169 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
50270196 CTGGTCGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
50270223 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
50270251 CTGGTGACTCTGTCACTTTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
50270277 CTGG
1 CTGG
50270281 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:50270275 original size:54 final size:54
Alignment explanation
Indices: 50270169--50270280 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
50270159 AGGAAGCGTC
50270169 CTGGTGGCTATGCCACAATTATCTGATCTGGTCGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTCGCTCTGCCACATATTTCTGTT
* * *
50270223 CTGGTGGCTCTGCCACGATTATCTGTATCTGGT-GACTCTGTCAC-T-TTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTCG-CTCTGCCACATATT-TCTGTT
50270277 CTGG
1 CTGG
50270281 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
53 2 0.04
54 35 0.67
55 15 0.29
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTCGCTCTGCCACATATTTCTGTT
Found at i:50281172 original size:45 final size:45
Alignment explanation
Indices: 50281120--50281230 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
50281110 AAATCTGAGT
*
50281120 TCGTTGAGTTGGTCAGAGTTCGTGATATATGTG-AGAAATCTGAAC
1 TCGTTGAGTTGGTCAGAGTTCGTGATATATGTGAAG-AATCCGAAC
* * *
50281165 TTGTTGAGTTGGTTCA-AGTTCGTGATATATGTGAAGCATCCGAGC
1 TCGTTGAGTTGG-TCAGAGTTCGTGATATATGTGAAGAATCCGAAC
*
50281210 TCGTTGAGTTGGTCCGAGTTC
1 TCGTTGAGTTGGTCAGAGTTC
50281231 ATTATGGATG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
44 2 0.04
45 50 0.88
46 5 0.09
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (45 bp):
TCGTTGAGTTGGTCAGAGTTCGTGATATATGTGAAGAATCCGAAC
Found at i:50293327 original size:73 final size:73
Alignment explanation
Indices: 50293204--50293388 Score: 235
Period size: 73 Copynumber: 2.5 Consensus size: 73
50293194 CGTGTGGTTG
* ** *
50293204 ACACAGCCTTGAACACGGGCGTGTTACGCGACCGTGTGAAAACTACACCTAAATTTCGAAAATAA
1 ACACAGCCTTGAACACGGGTGTGTTACATGGCCGTGTGAAAACTACACCTAAATTTCGAAAATAA
*
50293269 AATTCGCC
66 AATTCACC
* * * * *
50293277 ACATAGCCTTGAACACAGGTGTATTACATGGCCGTGTGAAAACTGCACCTAAATTTTGAAAATAA
1 ACACAGCCTTGAACACGGGTGTGTTACATGGCCGTGTGAAAACTACACCTAAATTTCGAAAATAA
50293342 AATTCACC
66 AATTCACC
* * * * *
50293350 ACACGGCCTAGCACACGGGTGTGTGACTTGGCCGTGTGA
1 ACACAGCCTTGAACACGGGTGTGTTACATGGCCGTGTGA
50293389 CTTCAATTTC
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
73 94 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (73 bp):
ACACAGCCTTGAACACGGGTGTGTTACATGGCCGTGTGAAAACTACACCTAAATTTCGAAAATAA
AATTCACC
Found at i:50295560 original size:50 final size:46
Alignment explanation
Indices: 50295447--50295568 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
50295437 GACAGGACAG
* * *
50295447 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
* * *
50295493 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATACACGGCATTGGA
1 GACAGGAATAAGCCATGTAAGTCCATATCAGATATAT----GGCATTGGA
**
50295543 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATAAGCCATGTAAGTCCAT
50295569 GTCGAAGACA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (46 bp):
GACAGGAATAAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
Found at i:50299778 original size:46 final size:44
Alignment explanation
Indices: 50299719--50299833 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
50299709 ACAGGACAGA
* *
50299719 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
50299765 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
50299809 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
50299834 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:50299814 original size:44 final size:45
Alignment explanation
Indices: 50299719--50299852 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
50299709 ACAGGACAGA
* *
50299719 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
50299765 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
50299809 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
50299853 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:50309010 original size:16 final size:16
Alignment explanation
Indices: 50308991--50309022 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50308981 GGCAAAAGTC
50308991 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
*
50309007 GAAATGTCGAAAAGCT
1 GAAATGCCGAAAAGCT
50309023 AAAAGATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.16
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:50309278 original size:29 final size:29
Alignment explanation
Indices: 50309236--50309411 Score: 248
Period size: 29 Copynumber: 6.1 Consensus size: 29
50309226 GAAAGCATGA
50309236 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50309265 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
50309294 ATACGAATGTGATTTAGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
50309323 ATATGAATGAGA-TTGGGCCTAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50309351 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* ** *
50309380 ATACGAATAAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
50309408 ATAT
1 ATAT
50309412 ACATGTATGT
Statistics
Matches: 131, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
28 43 0.33
29 88 0.67
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:50309371 original size:57 final size:57
Alignment explanation
Indices: 50309236--50309411 Score: 271
Period size: 57 Copynumber: 3.1 Consensus size: 57
50309226 GAAAGCATGA
* *
50309236 ATATGAATGTGATTTGGGCCTAATGGGCCATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCCATATGAATGAGA-TTGGGCCTAGTGGGCC
* * * *
50309294 ATACGAATGTGATTTAGGCCTAATGGGTCATATGAATGAGATTGGGCCTAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAGTGGGCC
* *
50309351 ATATGAATGTGATTTGGGCCTAATGGGCCATACGAATAAGATTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAGTGGGCC
50309408 ATAT
1 ATAT
50309412 ACATGTATGT
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 69 0.65
58 37 0.35
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (57 bp):
ATATGAATGTGATTTGGGCCTAATGGGCCATATGAATGAGATTGGGCCTAGTGGGCC
Found at i:50314825 original size:40 final size:40
Alignment explanation
Indices: 50314718--50314934 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
50314708 CGGATGATAA
* * *
50314718 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
50314758 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
50314797 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
50314837 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
50314877 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
50314917 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50314935 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 46 0.30
40 109 0.70
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:50314920 original size:80 final size:80
Alignment explanation
Indices: 50314718--50314934 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 80
50314708 CGGATGATAA
* * *
50314718 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGGCAAT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGGCAAT
*
50314780 TGTGCGAGTTATTATAC
64 TGTGCGAGTTACTATAC
* *
50314797 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-AT
1 CCGGGCT-ATGTCCCGAAGGCATTCGTGCGAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCAAT
*
50314859 TGGTGCGAGTTACTATAT
64 T-GTGCGAGTTACTATAC
* * *
50314877 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
50314935 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
79 60 0.51
80 58 0.49
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACTATAC
Found at i:50314930 original size:119 final size:119
Alignment explanation
Indices: 50314718--50314934 Score: 289
Period size: 119 Copynumber: 1.8 Consensus size: 119
50314708 CGGATGATAA
* * *
50314718 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
* *
50314783 GCGAGTTATTATACCCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
66 GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
* *
50314837 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
* *
50314900 CGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 -GAGCGAGTTA-CTATACCCGGGCTAAATCCCGAAGG
50314935 TACTTGGCTT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 62 0.73
120 21 0.25
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
Found at i:50317231 original size:28 final size:29
Alignment explanation
Indices: 50317117--50317269 Score: 202
Period size: 29 Copynumber: 5.3 Consensus size: 29
50317107 GAAAGCATGA
50317117 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
50317146 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
50317175 ATACGAATGTGATTTCGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
50317204 GTATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
50317232 ATATGAATAAGA-TTGGGCCTAATGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
50317260 ATATGCATGT
1 ATATGAATGT
50317270 ATGTAGACTT
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 45 0.42
29 63 0.58
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Done.