Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 150 of 290
Found at i:51001198 original size:15 final size:15
Alignment explanation
Indices: 51001180--51001248 Score: 61
Period size: 15 Copynumber: 4.6 Consensus size: 15
51001170 TAGTACCAGT
*
51001180 ATCTATAGTTTCAGA
1 ATCTATAGTTTCATA
* *
51001195 ATCTAAAGTTTCACA
1 ATCTATAGTTTCATA
51001210 A--TATAGTTTTTCATA
1 ATCTATAG--TTTCATA
* *
51001225 ATCTAGAATTTCATA
1 ATCTATAGTTTCATA
51001240 ATCTATAGT
1 ATCTATAGT
51001249 ATTCTATTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
13 4 0.10
15 35 0.83
17 3 0.07
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (15 bp):
ATCTATAGTTTCATA
Found at i:51005572 original size:50 final size:51
Alignment explanation
Indices: 51005451--51005576 Score: 155
Period size: 52 Copynumber: 2.5 Consensus size: 51
51005441 ATTGTGAGAA
* * * *
51005451 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGATACTACGTGTTCAAAATGG-TTTAGGT
* * * *
51005503 CACGTGTGTAGTGCTAAGTGCAGGATACTACGTGTTCCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGATACTACGTGTTCAAAATGGTTTAGGT
*
51005553 CGCATGTGTAGTACTAAGTGCAGG
1 CACATGTGTAGTACTAAGTGCAGG
51005577 CTATTATGCG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 27 0.43
52 36 0.57
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGATACTACGTGTTCAAAATGGTTTAGGT
Found at i:51005669 original size:51 final size:50
Alignment explanation
Indices: 51005593--51005733 Score: 142
Period size: 51 Copynumber: 2.8 Consensus size: 50
51005583 TGCGTACTCA
* * * *
51005593 ATAGCTTCGAACACATGTGTAGTACTAAGTGCAGGCCACTAT-GTGTAA-AAG
1 ATAGCTTTG-ACACAAGTGTGGTACTATGTGCAGGCCACT-TGGTG-AAGAAG
* * *
51005644 ATATCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTGGTGAAGAAG
1 ATAGCTTT-GACACAAGTGTGGTACTATGTGCAGGCCACTTGGTGAAGAAG
* *
51005695 GTAGCTTTGACTACAAGGGTGGTACTATGTGCAGGCCAC
1 ATAGCTTTGAC-ACAAGTGTGGTACTATGTGCAGGCCAC
51005734 CAGGCATTCG
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
50 5 0.07
51 68 0.92
52 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (50 bp):
ATAGCTTTGACACAAGTGTGGTACTATGTGCAGGCCACTTGGTGAAGAAG
Found at i:51007985 original size:28 final size:28
Alignment explanation
Indices: 51007945--51008000 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
51007935 TCATAACCTA
51007945 ATCATTCATAAACATTCAATCCAATTGT
1 ATCATTCATAAACATTCAATCCAATTGT
51007973 ATCATTCATAAACATTCAATCCAATTGT
1 ATCATTCATAAACATTCAATCCAATTGT
51008001 GCACACCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (28 bp):
ATCATTCATAAACATTCAATCCAATTGT
Found at i:51021897 original size:246 final size:246
Alignment explanation
Indices: 51021463--51021954 Score: 984
Period size: 246 Copynumber: 2.0 Consensus size: 246
51021453 TATATATTTA
51021463 GACATGTGATATGGCTTGGTATGGTTGTGAATATGTCATGGTTTTGGTATAAGATATGTAATGCA
1 GACATGTGATATGGCTTGGTATGGTTGTGAATATGTCATGGTTTTGGTATAAGATATGTAATGCA
51021528 ATATGATATATTTGATATGTTTTATTGGACAAATGAAATGGTAAATGTTGGTAAGTTTTGGCAAG
66 ATATGATATATTTGATATGTTTTATTGGACAAATGAAATGGTAAATGTTGGTAAGTTTTGGCAAG
51021593 TTTTAGCATGAAATTGAATGGTGTATAGAAAGAAATGTTTTGACAAGCTTTTAACTTATGTTTTG
131 TTTTAGCATGAAATTGAATGGTGTATAGAAAGAAATGTTTTGACAAGCTTTTAACTTATGTTTTG
51021658 ATATAGATTGGTAAGGCTTATGAGTATGTATTTGATTGGAATTGATATGTC
196 ATATAGATTGGTAAGGCTTATGAGTATGTATTTGATTGGAATTGATATGTC
51021709 GACATGTGATATGGCTTGGTATGGTTGTGAATATGTCATGGTTTTGGTATAAGATATGTAATGCA
1 GACATGTGATATGGCTTGGTATGGTTGTGAATATGTCATGGTTTTGGTATAAGATATGTAATGCA
51021774 ATATGATATATTTGATATGTTTTATTGGACAAATGAAATGGTAAATGTTGGTAAGTTTTGGCAAG
66 ATATGATATATTTGATATGTTTTATTGGACAAATGAAATGGTAAATGTTGGTAAGTTTTGGCAAG
51021839 TTTTAGCATGAAATTGAATGGTGTATAGAAAGAAATGTTTTGACAAGCTTTTAACTTATGTTTTG
131 TTTTAGCATGAAATTGAATGGTGTATAGAAAGAAATGTTTTGACAAGCTTTTAACTTATGTTTTG
51021904 ATATAGATTGGTAAGGCTTATGAGTATGTATTTGATTGGAATTGATATGTC
196 ATATAGATTGGTAAGGCTTATGAGTATGTATTTGATTGGAATTGATATGTC
51021955 ATGAGTGGCT
Statistics
Matches: 246, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 246 1.00
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.40
Consensus pattern (246 bp):
GACATGTGATATGGCTTGGTATGGTTGTGAATATGTCATGGTTTTGGTATAAGATATGTAATGCA
ATATGATATATTTGATATGTTTTATTGGACAAATGAAATGGTAAATGTTGGTAAGTTTTGGCAAG
TTTTAGCATGAAATTGAATGGTGTATAGAAAGAAATGTTTTGACAAGCTTTTAACTTATGTTTTG
ATATAGATTGGTAAGGCTTATGAGTATGTATTTGATTGGAATTGATATGTC
Found at i:51026163 original size:15 final size:15
Alignment explanation
Indices: 51026143--51026194 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
51026133 ACTACAAAAC
51026143 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
51026158 ATTTATAATTGTAATAAGT
1 ATTTATTA-T-TAAT-A-T
*
51026177 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
51026192 ATT
1 ATT
51026195 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 2 0.07
17 7 0.23
18 2 0.07
19 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:51026252 original size:15 final size:16
Alignment explanation
Indices: 51026232--51026262 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51026222 AATAATAATA
51026232 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
51026247 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
51026263 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:51026315 original size:22 final size:22
Alignment explanation
Indices: 51026271--51026330 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
51026261 TTAAAATAAA
* *
51026271 ATTAAAATATTAA-ATA-ATTT
1 ATTAAAATAATAATTTATATTT
51026291 ATTAAAATAATAATTTATATTT
1 ATTAAAATAATAATTTATATTT
* *
51026313 ATTATATTAATAATTTAT
1 ATTAAAATAATAATTTAT
51026331 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.35
21 2 0.06
22 20 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTAAAATAATAATTTATATTT
Found at i:51026914 original size:17 final size:16
Alignment explanation
Indices: 51026865--51026916 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 16
51026855 ACATCCACTT
51026865 AATAAGATATTTATAACAA
1 AATAA-ATA-TTATAA-AA
51026884 ATATAAA-ATTATAAAA
1 A-ATAAATATTATAAAA
51026900 AATAAATATTAATAAAA
1 AATAAATATT-ATAAAA
51026917 TTGACATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 12 0.40
18 1 0.03
19 2 0.07
20 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (16 bp):
AATAAATATTATAAAA
Found at i:51027132 original size:18 final size:19
Alignment explanation
Indices: 51027109--51027169 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 19
51027099 TTTAAAATTA
51027109 TTAATTGCATT-ATTATTT
1 TTAATTGCATTAATTATTT
*
51027127 TTAATT-TATTAATTATTT
1 TTAATTGCATTAATTATTT
* *
51027145 TAAAATGACATTAATTAATTT
1 TTAATTG-CATTAATT-ATTT
51027166 TTAA
1 TTAA
51027170 AATTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
17 3 0.09
18 17 0.50
20 7 0.21
21 7 0.21
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
TTAATTGCATTAATTATTT
Found at i:51027708 original size:71 final size:70
Alignment explanation
Indices: 51027629--51027776 Score: 192
Period size: 70 Copynumber: 2.1 Consensus size: 70
51027619 GTTTCATTTT
* * * * *
51027629 TCCA-ATTTAAATTGA-AAGTAAGCAGAGACCTTGAAATCTTGATCTGTTCTCTTATTTTGTAGG
1 TCCATATTTAAATTGATAA-TAAGAAAAAACCTTGAAATATTGATCT-TTCTCTTATTCTGTAGG
*
51027692 GTTTTAA
64 GTTCTAA
* *
51027699 TCCATATTTAAATTGATAATAAGAAAAAATCTTGAAATATTGCTCTTTCTCTTATTCTGTAGGGT
1 TCCATATTTAAATTGATAATAAGAAAAAACCTTGAAATATTGATCTTTCTCTTATTCTGTAGGGT
51027764 TCTAA
66 TCTAA
51027769 TCCATATT
1 TCCATATT
51027777 AGTAATTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
70 34 0.50
71 32 0.47
72 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (70 bp):
TCCATATTTAAATTGATAATAAGAAAAAACCTTGAAATATTGATCTTTCTCTTATTCTGTAGGGT
TCTAA
Found at i:51033025 original size:16 final size:16
Alignment explanation
Indices: 51032977--51033025 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
51032967 AAATAATCAC
* *
51032977 AAATACTAGTATTTTA
1 AAATGCTAGCATTTTA
*
51032993 AAATGAT-GCATTTTA
1 AAATGCTAGCATTTTA
*
51033008 AAATGCTAGCATTCTA
1 AAATGCTAGCATTTTA
51033024 AA
1 AA
51033026 TGTCTTCAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (16 bp):
AAATGCTAGCATTTTA
Found at i:51033715 original size:30 final size:30
Alignment explanation
Indices: 51033679--51033752 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
51033669 TAAGTTGTGG
* * *
51033679 ATTTTAGTCATTATACTTTT-AATTTGATTA
1 ATTTTAGTCACTAAACTTTTAAATTTG-TCA
*
51033709 ATTTTAGTCCCTAAACTTTTCAAATTTGTCA
1 ATTTTAGTCACTAAACTTTT-AAATTTGTCA
51033740 ATTTTAGTCACTA
1 ATTTTAGTCACTA
51033753 CTTCTCACAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 17 0.46
31 14 0.38
32 6 0.16
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.50
Consensus pattern (30 bp):
ATTTTAGTCACTAAACTTTTAAATTTGTCA
Found at i:51039384 original size:18 final size:18
Alignment explanation
Indices: 51039356--51039400 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
51039346 CACCCTTTAA
51039356 TTTTATAATTTTCA-GAATT
1 TTTTAT-ATTTT-ATGAATT
*
51039375 TTTTATATTTTATGATTT
1 TTTTATATTTTATGAATT
51039393 TTTTATAT
1 TTTTATAT
51039401 ATATTTCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 17 0.71
19 6 0.25
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTATATTTTATGAATT
Found at i:51040886 original size:30 final size:30
Alignment explanation
Indices: 51040824--51040886 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
51040814 TTTTATTTTA
*
51040824 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGGCAT
*
51040854 TTGTTAATTTTTTTATTATTTTAGAA-GCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
51040884 TTG
1 TTG
51040887 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGGCAT
Found at i:51042799 original size:946 final size:946
Alignment explanation
Indices: 51041036--51042928 Score: 3786
Period size: 946 Copynumber: 2.0 Consensus size: 946
51041026 TTAATACGGG
51041036 GGGCCGGGCCGGGCTCGGGTTTTAGTATTTTTATCTGGGTCGGGCTTGGACAAAATTTTAGGCCT
1 GGGCCGGGCCGGGCTCGGGTTTTAGTATTTTTATCTGGGTCGGGCTTGGACAAAATTTTAGGCCT
51041101 ATTTTTTGGGCTCTGCTTGGCCCAAGCCCAATAAATGGGCATGATTTTTTAGTTGAGCCTAGCCC
66 ATTTTTTGGGCTCTGCTTGGCCCAAGCCCAATAAATGGGCATGATTTTTTAGTTGAGCCTAGCCC
51041166 GAACCCGGTCCGGCCCGGCCCATGAACACCTCTAGTGACTGATATTTTTTTTTTCAAAAACAATT
131 GAACCCGGTCCGGCCCGGCCCATGAACACCTCTAGTGACTGATATTTTTTTTTTCAAAAACAATT
51041231 TGTTTTTGGGGTGTTAGCATATTAATAGCCAATACTTCTTTATCTGATTAAAAAAATTATATTTT
196 TGTTTTTGGGGTGTTAGCATATTAATAGCCAATACTTCTTTATCTGATTAAAAAAATTATATTTT
51041296 TTTGGAGTGTGAGGTATTGGCCAATAAATGGCCAAAGTCATTCAATAAATGGGATGGGAATATTG
261 TTTGGAGTGTGAGGTATTGGCCAATAAATGGCCAAAGTCATTCAATAAATGGGATGGGAATATTG
51041361 CAACATTAACTTCTTGTTTTCCAATCTTTTTTATTTCCTAAATTTAATTATATATTTTATATTTT
326 CAACATTAACTTCTTGTTTTCCAATCTTTTTTATTTCCTAAATTTAATTATATATTTTATATTTT
51041426 AAAATAATATTATTGCATTACTTACATTATTGTAAAATTTAAAAACTAATTTAAAGTTAATATGC
391 AAAATAATATTATTGCATTACTTACATTATTGTAAAATTTAAAAACTAATTTAAAGTTAATATGC
51041491 ATAATTAAATTAGATTTTTTTATAAAATTAGAATATGCTTTAATAATTTTCATCTTTTATAATAA
456 ATAATTAAATTAGATTTTTTTATAAAATTAGAATATGCTTTAATAATTTTCATCTTTTATAATAA
51041556 TTCAACTCAACATTGTTAAATGATTGTTTCTTTTATTTTAAAACTAACGAGTAATATGTTTATAA
521 TTCAACTCAACATTGTTAAATGATTGTTTCTTTTATTTTAAAACTAACGAGTAATATGTTTATAA
51041621 ATTTAATCTACAGACATTATTTCTACACATTATTTTACATGTTATTTTTATATTTTAAGATTTAA
586 ATTTAATCTACAGACATTATTTCTACACATTATTTTACATGTTATTTTTATATTTTAAGATTTAA
51041686 TTTTAAAAAATCTAATGTGAGTGATGCAATAATATTATTTTAAAATATAAAATCTGTAATTAAAT
651 TTTTAAAAAATCTAATGTGAGTGATGCAATAATATTATTTTAAAATATAAAATCTGTAATTAAAT
51041751 TTGGGAAATAAAAAAGATGGGGAAATAAGAAGGGGTTAATGTTGCAATATTCTCATCCCTTTTGT
716 TTGGGAAATAAAAAAGATGGGGAAATAAGAAGGGGTTAATGTTGCAATATTCTCATCCCTTTTGT
51041816 TGGGTGACTTTGGCCATATACTGGCTAGCACCTCACACCCAAAAAAAAAAAAATTTAATCAGATA
781 TGGGTGACTTTGGCCATATACTGGCTAGCACCTCACACCCAAAAAAAAAAAAATTTAATCAGATA
51041881 AAGGGGTGTCAGGTGTGTTAGCACTCAAAAAAGATTTTGAAAAAAAAAATACATAGGTGCCGGCC
846 AAGGGGTGTCAGGTGTGTTAGCACTCAAAAAAGATTTTGAAAAAAAAAATACATAGGTGCCGGCC
51041946 ATCTAGTATCTAAAACCCCAAAAATTATTTTTAATA
911 ATCTAGTATCTAAAACCCCAAAAATTATTTTTAATA
51041982 GGGCCGGGCCGGGCTCGGGTTTTAGTATTTTTATCTGGGTCGGGCTTGGACAAAATTTTAGGCCT
1 GGGCCGGGCCGGGCTCGGGTTTTAGTATTTTTATCTGGGTCGGGCTTGGACAAAATTTTAGGCCT
51042047 ATTTTTTGGGCTCTGCTTGGCCCAAGCCCAATAAATGGGCATGATTTTTTAGTTGAGCCTAGCCC
66 ATTTTTTGGGCTCTGCTTGGCCCAAGCCCAATAAATGGGCATGATTTTTTAGTTGAGCCTAGCCC
51042112 GAACCCGGTCCGGCCCGGCCCATGAACACCTCTAGTGACTGATATTTTTTTTTTCAAAAACAATT
131 GAACCCGGTCCGGCCCGGCCCATGAACACCTCTAGTGACTGATATTTTTTTTTTCAAAAACAATT
51042177 TGTTTTTGGGGTGTTAGCATATTAATAGCCAATACTTCTTTATCTGATTAAAAAAATTATATTTT
196 TGTTTTTGGGGTGTTAGCATATTAATAGCCAATACTTCTTTATCTGATTAAAAAAATTATATTTT
51042242 TTTGGAGTGTGAGGTATTGGCCAATAAATGGCCAAAGTCATTCAATAAATGGGATGGGAATATTG
261 TTTGGAGTGTGAGGTATTGGCCAATAAATGGCCAAAGTCATTCAATAAATGGGATGGGAATATTG
51042307 CAACATTAACTTCTTGTTTTCCAATCTTTTTTATTTCCTAAATTTAATTATATATTTTATATTTT
326 CAACATTAACTTCTTGTTTTCCAATCTTTTTTATTTCCTAAATTTAATTATATATTTTATATTTT
51042372 AAAATAATATTATTGCATTACTTACATTATTGTAAAATTTAAAAACTAATTTAAAGTTAATATGC
391 AAAATAATATTATTGCATTACTTACATTATTGTAAAATTTAAAAACTAATTTAAAGTTAATATGC
51042437 ATAATTAAATTAGATTTTTTTATAAAATTAGAATATGCTTTAATAATTTTCATCTTTTATAATAA
456 ATAATTAAATTAGATTTTTTTATAAAATTAGAATATGCTTTAATAATTTTCATCTTTTATAATAA
51042502 TTCAACTCAACATTGTTAAATGATTGTTTCTTTTATTTTAAAACTAACGAGTAATATGTTTATAA
521 TTCAACTCAACATTGTTAAATGATTGTTTCTTTTATTTTAAAACTAACGAGTAATATGTTTATAA
51042567 ATTTAATCTACAGACATTATTTCTACACATTATTTTACATGTTATTTTTATATTTTAAGATTTAA
586 ATTTAATCTACAGACATTATTTCTACACATTATTTTACATGTTATTTTTATATTTTAAGATTTAA
51042632 TTTTAAAAAATCTAATGTGAGTGATGCAATAATATTATTTTAAAATATAAAATCTGTAATTAAAT
651 TTTTAAAAAATCTAATGTGAGTGATGCAATAATATTATTTTAAAATATAAAATCTGTAATTAAAT
51042697 TTGGGAAATAAAAAAGATGGGGAAATAAGAAGGGGTTAATGTTGCAATATTCTCATCCCTTTTGT
716 TTGGGAAATAAAAAAGATGGGGAAATAAGAAGGGGTTAATGTTGCAATATTCTCATCCCTTTTGT
51042762 TGGGTGACTTTGGCCATATACTGGCTAGCACCTCACACCCAAAAAAAAAAAAATTTAATCAGATA
781 TGGGTGACTTTGGCCATATACTGGCTAGCACCTCACACCCAAAAAAAAAAAAATTTAATCAGATA
51042827 AAGGGGTGTCAGGTGTGTTAGCACTCAAAAAAGATTTTGAAAAAAAAAATACATAGGTGCCGGCC
846 AAGGGGTGTCAGGTGTGTTAGCACTCAAAAAAGATTTTGAAAAAAAAAATACATAGGTGCCGGCC
51042892 ATCTAGTATCTAAAACCCCAAAAATTATTTTTAATA
911 ATCTAGTATCTAAAACCCCAAAAATTATTTTTAATA
51042928 G
1 G
51042929 AAAAAATAGT
Statistics
Matches: 947, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
946 947 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (946 bp):
GGGCCGGGCCGGGCTCGGGTTTTAGTATTTTTATCTGGGTCGGGCTTGGACAAAATTTTAGGCCT
ATTTTTTGGGCTCTGCTTGGCCCAAGCCCAATAAATGGGCATGATTTTTTAGTTGAGCCTAGCCC
GAACCCGGTCCGGCCCGGCCCATGAACACCTCTAGTGACTGATATTTTTTTTTTCAAAAACAATT
TGTTTTTGGGGTGTTAGCATATTAATAGCCAATACTTCTTTATCTGATTAAAAAAATTATATTTT
TTTGGAGTGTGAGGTATTGGCCAATAAATGGCCAAAGTCATTCAATAAATGGGATGGGAATATTG
CAACATTAACTTCTTGTTTTCCAATCTTTTTTATTTCCTAAATTTAATTATATATTTTATATTTT
AAAATAATATTATTGCATTACTTACATTATTGTAAAATTTAAAAACTAATTTAAAGTTAATATGC
ATAATTAAATTAGATTTTTTTATAAAATTAGAATATGCTTTAATAATTTTCATCTTTTATAATAA
TTCAACTCAACATTGTTAAATGATTGTTTCTTTTATTTTAAAACTAACGAGTAATATGTTTATAA
ATTTAATCTACAGACATTATTTCTACACATTATTTTACATGTTATTTTTATATTTTAAGATTTAA
TTTTAAAAAATCTAATGTGAGTGATGCAATAATATTATTTTAAAATATAAAATCTGTAATTAAAT
TTGGGAAATAAAAAAGATGGGGAAATAAGAAGGGGTTAATGTTGCAATATTCTCATCCCTTTTGT
TGGGTGACTTTGGCCATATACTGGCTAGCACCTCACACCCAAAAAAAAAAAAATTTAATCAGATA
AAGGGGTGTCAGGTGTGTTAGCACTCAAAAAAGATTTTGAAAAAAAAAATACATAGGTGCCGGCC
ATCTAGTATCTAAAACCCCAAAAATTATTTTTAATA
Found at i:51045100 original size:23 final size:23
Alignment explanation
Indices: 51045070--51045117 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
51045060 AAAGAGAGTA
51045070 AATTGAAAAGTGTATAATCTTAT
1 AATTGAAAAGTGTATAATCTTAT
51045093 AATTGAAAAGTGTATAATCTTAT
1 AATTGAAAAGTGTATAATCTTAT
51045116 AA
1 AA
51045118 AAAGGTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (23 bp):
AATTGAAAAGTGTATAATCTTAT
Found at i:51046340 original size:58 final size:58
Alignment explanation
Indices: 51046276--51046397 Score: 235
Period size: 58 Copynumber: 2.1 Consensus size: 58
51046266 AATACCCACG
51046276 CATCTTGAGACACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTC
1 CATCTTGAGACACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTC
51046334 CATCTTGAGACACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTC
1 CATCTTGAGACACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTC
*
51046392 TATCTT
1 CATCTT
51046398 TTGCCTTGAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 63 1.00
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (58 bp):
CATCTTGAGACACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTC
Found at i:51051568 original size:20 final size:20
Alignment explanation
Indices: 51051543--51051580 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51051533 CTCAATCGAG
51051543 GATAATTAATTATTTAATTA
1 GATAATTAATTATTTAATTA
*
51051563 GATAATTACTTATTTAAT
1 GATAATTAATTATTTAAT
51051581 CAATCATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
GATAATTAATTATTTAATTA
Found at i:51053232 original size:31 final size:31
Alignment explanation
Indices: 51053158--51053285 Score: 141
Period size: 31 Copynumber: 4.1 Consensus size: 31
51053148 CTTGACGGGC
* * * *
51053158 TCTA-TCTATGTTTACTGTTCTAGCAGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
* *
51053188 TCTCTGTTCTGTGTTTACTGTCCTAGCGGACTA
1 --TCTATTCTGTGTTTACTGTCCCAGCGGACTA
* **
51053221 TCTATTCTGTGTTTACTATCCCAATGGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
*
51053252 TCTATTTTGTGTTTACTGTCCCAGCGGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
51053283 TCT
1 TCT
51053286 TTGTAGGTGC
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
31 56 0.68
32 3 0.04
33 23 0.28
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (31 bp):
TCTATTCTGTGTTTACTGTCCCAGCGGACTA
Found at i:51053537 original size:109 final size:108
Alignment explanation
Indices: 51053403--51053985 Score: 446
Period size: 109 Copynumber: 5.2 Consensus size: 108
51053393 ACATGGATGC
* * * **
51053403 CATAACATCTTTCATCTACGATCTTACACCGAATACCTTATACCTTGTACCATGTCGCTGTGGCA
1 CATAGCATCTTTCATCTATGGTCTTACACC-AATACCTTATACCTTGTACCATGTCGCCATGGCA
* *
51053468 TCTTTCATCCA-GAATCTTATGCTATGTACCTCATACCAGACTTT
65 TCTTTCATCCATG-GTCTTATGCTATGTACCTCATACCAGACTAT
* ** * * *
51053512 CGTAGCATCTTTCATCTATGGTCTTATGCCATATACCTTATACCTTATACCAT-ACAGCCATGAC
1 CATAGCATCTTTCATCTATGGTCTTACACCA-ATACCTTATACCTTGTACCATGTC-GCCATGGC
** * ** * *
51053576 ATCTTTCATCCATGGTCTTACACCAAATACCTTATACCTTGTACCT-T
64 ATCTTTCATCCATGGTCTTATGCTATGTACCTCATACC-AG-A-CTAT
* *
51053623 GCAGCCGTGGCATCTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGTCGCC
1 -CA----TAGCATCTTTCATCT-ATGGTCTTACACC-AATACCTTATACCTTGTACCATGTCGCC
* * * * *
51053687 ATGGCATCTTTCATCCATGGTCTTACACTGAATACTTTATACCTTATACCA-TCTGT
59 ATGGCATCTTTCATCCATGGTCTT--A-TG----CTATGTACCTCATACCAGACTAT
* * * * * * * *
51053743 CATGGGA-CTTTTCATCTATGGTTTTACACTGAATACCTTATACCTTATACCATCT-GTCATGGG
1 CATAGCATC-TTTCATCTATGGTCTTACAC-CAATACCTTATACCTTGTACCATGTCGCCATGGC
* * *
51053806 ACCTTTCATCTATGGTCTTATGCTATGTACCTCATACCAGGCTAT
64 ATCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGACTAT
* * * * *
51053851 CATAGCCTCTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCAT-TCCACCATGAC
1 CATAGCATCTTTCATCTATGGTCTTACACCA-ATACCTTATACCTTGTACCATGT-CGCCATGGC
* * *
51053915 ATCTTTCATCCATGATCTTATGCTATGTACCTC-TACCAGGCTAC
64 ATCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGACTAT
* *
51053959 CATAGCCTCTTTCATATATGGTCTTAC
1 CATAGCATCTTTCATCTATGGTCTTAC
51053986 GCCATATATC
Statistics
Matches: 378, Mismatches: 66, Indels: 61
0.75 0.13 0.12
Matches are distributed among these distances:
107 16 0.04
108 82 0.22
109 113 0.30
110 2 0.01
111 4 0.01
112 4 0.01
114 24 0.06
115 43 0.11
116 69 0.18
117 2 0.01
118 1 0.00
119 4 0.01
120 1 0.00
123 13 0.03
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (108 bp):
CATAGCATCTTTCATCTATGGTCTTACACCAATACCTTATACCTTGTACCATGTCGCCATGGCAT
CTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGACTAT
Found at i:51053579 original size:58 final size:57
Alignment explanation
Indices: 51053517--51053934 Score: 295
Period size: 58 Copynumber: 7.4 Consensus size: 57
51053507 ACTTTCGTAG
**
51053517 CATCTTTCATCTATGGTCTTATGCCATATACCTTATACCTTATACCATACAGCCATGA
1 CATCTTTCATCTATGGTCTTACACCATATACCTTATACCTTATACCAT-CAGCCATGA
* * * * * *
51053575 CATCTTTCATCCATGGTCTTACACCAAATACCTTATACCTTGTACCTTGCAGCCGTGG
1 CATCTTTCATCTATGGTCTTACACCATATACCTTATACCTTATACCAT-CAGCCATGA
* * * *
51053633 CATCTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGTC-GCCATGG
1 CATCTTTCATCT-ATGGTCTTACACCATATACCTTATACCTTATACCA--TCAGCCATGA
* * * * *
51053691 CATCTTTCATCCATGGTCTTACACTGA-ATACTTTATACCTTATACCATCTGTCATGGGA
1 CATCTTTCATCTATGGTCTTACAC-CATATACCTTATACCTTATACCATCAGCCAT--GA
* * * * *
51053750 C-T-TTTCATCTATGGTTTTACACTGA-ATACCTTATACCTTATACCATCTGTCATGG
1 CATCTTTCATCTATGGTCTTACAC-CATATACCTTATACCTTATACCATCAGCCATGA
* * ** * * * ** * *
51053805 GACCTTTCATCTATGGTCTTATGCTATGTACCTCATACC--AGGCTATCA--TA-G-
1 CATCTTTCATCTATGGTCTTACACCATATACCTTATACCTTATACCATCAGCCATGA
* * * *
51053856 CCTCTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCATTCCA-CCATGA
1 CATCTTTCATCTATGGTCTTACACCATATACCTTATACCTTATACCA-T-CAGCCATGA
* *
51053914 CATCTTTCATCCATGATCTTA
1 CATCTTTCATCTATGGTCTTA
51053935 TGCTATGTAC
Statistics
Matches: 289, Mismatches: 53, Indels: 36
0.76 0.14 0.10
Matches are distributed among these distances:
51 31 0.11
52 1 0.00
53 3 0.01
54 1 0.00
55 8 0.03
56 4 0.01
57 80 0.28
58 156 0.54
59 4 0.01
60 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.11, T:0.37
Consensus pattern (57 bp):
CATCTTTCATCTATGGTCTTACACCATATACCTTATACCTTATACCATCAGCCATGA
Found at i:51053837 original size:57 final size:56
Alignment explanation
Indices: 51053516--51053825 Score: 318
Period size: 58 Copynumber: 5.4 Consensus size: 56
51053506 GACTTTCGTA
** *
51053516 GCATCTTTCATCTATGGTCTTATGCCATATACCTTATACCTTATACCATACAGCCATG
1 GCATCTTTCATCTATGGTCTTACACCA-ATACCTTATACCTTATACCAT-CTGCCATG
* * * * * *
51053574 ACATCTTTCATCCATGGTCTTACACCAAATACCTTATACCTTGTACCTTGCAGCCGTG
1 GCATCTTTCATCTATGGTCTTACACC-AATACCTTATACCTTATACCAT-CTGCCATG
* * *
51053632 GCATCTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGTCGCCATG
1 GCATCTTTCATCT-ATGGTCTTACACC-AATACCTTATACCTTATACCATCT-GCCATG
* * * *
51053690 GCATCTTTCATCCATGGTCTTACACTGAATACTTTATACCTTATACCATCTGTCATG
1 GCATCTTTCATCTATGGTCTTACAC-CAATACCTTATACCTTATACCATCTGCCATG
* * * *
51053747 GGA-CTTTTCATCTATGGTTTTACACTGAATACCTTATACCTTATACCATCTGTCATG
1 GCATC-TTTCATCTATGGTCTTACAC-CAATACCTTATACCTTATACCATCTGCCATG
* *
51053804 GGACCTTTCATCTATGGTCTTA
1 GCATCTTTCATCTATGGTCTTA
51053826 TGCTATGTAC
Statistics
Matches: 218, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
56 1 0.00
57 75 0.34
58 141 0.65
59 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.37
Consensus pattern (56 bp):
GCATCTTTCATCTATGGTCTTACACCAATACCTTATACCTTATACCATCTGCCATG
Found at i:51053869 original size:51 final size:50
Alignment explanation
Indices: 51053808--51053984 Score: 156
Period size: 51 Copynumber: 3.4 Consensus size: 50
51053798 GTCATGGGAC
51053808 CTTTCATCTATGGTCTTATGCTATGTACCTCATACCAGGCTATCATAGCCT
1 CTTTCATCTATGGTCTTATGCTATGTACCTC-TACCAGGCTATCATAGCCT
* * * * * * * * *
51053859 CTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCATTCCACCATGACAT
1 CTTTCATCTATGGTCTTATGCTATGTACC-TCTACC-AG-GCTA-T-CA-TA-G-CCT
* * *
51053917 CTTTCATCCATGATCTTATGCTATGTACCTCTACCAGGCTACCATAGCCT
1 CTTTCATCTATGGTCTTATGCTATGTACCTCTACCAGGCTATCATAGCCT
*
51053967 CTTTCATATATGGTCTTA
1 CTTTCATCTATGGTCTTA
51053985 CGCCATATAT
Statistics
Matches: 94, Mismatches: 24, Indels: 17
0.70 0.18 0.13
Matches are distributed among these distances:
50 17 0.18
51 31 0.33
52 3 0.03
53 4 0.04
54 1 0.01
55 4 0.04
56 2 0.02
57 6 0.06
58 26 0.28
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38
Consensus pattern (50 bp):
CTTTCATCTATGGTCTTATGCTATGTACCTCTACCAGGCTATCATAGCCT
Found at i:51053902 original size:108 final size:108
Alignment explanation
Indices: 51053410--51053993 Score: 326
Period size: 116 Copynumber: 5.3 Consensus size: 108
51053400 TGCCATAACA
* * * * * ** * *
51053410 TCTTTCATCTACGATCTTACACCGA-ATACCTTATACCTTGTACCATGT-CGCTGTGGCATCTTT
1 TCTTTCATCTATGGTCTTACGCC-ATATACCTTATACCTTATACCAT-TCCACCATGACACCTTT
* ** * *
51053473 CATCCA-GAATCTTATGCTATGTACCTCATACCAGACTTTCGTAGCA
64 CATCCATG-ATCTTATGCTATGTACCTC-TACCAGGCTACCATAGCC
* * *
51053519 TCTTTCATCTATGGTCTTATGCCATATACCTTATACCTTATACCA-TACAGCCATGACATCTTTC
1 TCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTATACCATTCCA-CCATGACACCTTTC
* ** * * ** * * *
51053583 ATCCATGGTCTTACACCAAATACCTTATACCTTGTACCTTGC-AGCCGTGGCA
65 ATCCATGATCTTA-TGC---TA---TGTACC-TCTACCAGGCTA-CCATAGCC
* * * * * * *
51053635 TCTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGT-CGCCATGGCATCTTT
1 TCTTTCATCT-ATGGTCTTACGCCATATACCTTATACCTTATACCAT-TCCACCATGACACCTTT
* * * * * ** * *
51053698 CATCCATGGTCTTACACTGAATACTTTATACCTTATACCA-TCTGTCATGGGAC
64 CATCCATGATCTT--A-TG----CTATGTACC-TCTACCAGGCTACCAT-AGCC
* * * *** **
51053751 T-TTTCATCTATGGTTTTACACTGA-ATACCTTATACCTTATACCA-TCTGTCATGGGACCTTTC
1 TCTTTCATCTATGGTCTTACGC-CATATACCTTATACCTTATACCATTCCACCATGACACCTTTC
* * *
51053813 ATCTATGGTCTTATGCTATGTACCTCATACCAGGCTATCATAGCC
65 ATCCATGATCTTATGCTATGTACCTC-TACCAGGCTACCATAGCC
* * *
51053858 TCTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCATTCCACCATGACATCTTTCA
1 TCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTATACCATTCCACCATGACACCTTTCA
51053923 TCCATGATCTTATGCTATGTACCTCTACCAGGCTACCATAGCC
66 TCCATGATCTTATGCTATGTACCTCTACCAGGCTACCATAGCC
*
51053966 TCTTTCATATATGGTCTTACGCCATATA
1 TCTTTCATCTATGGTCTTACGCCATATA
51053994 TCATCGTTAC
Statistics
Matches: 374, Mismatches: 69, Indels: 65
0.74 0.14 0.13
Matches are distributed among these distances:
106 1 0.00
107 17 0.05
108 88 0.24
109 95 0.25
110 2 0.01
111 2 0.01
112 1 0.00
113 3 0.01
114 23 0.06
115 39 0.10
116 96 0.26
117 2 0.01
118 3 0.01
119 1 0.00
122 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (108 bp):
TCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTATACCATTCCACCATGACACCTTTCA
TCCATGATCTTATGCTATGTACCTCTACCAGGCTACCATAGCC
Found at i:51058106 original size:22 final size:22
Alignment explanation
Indices: 51058081--51058124 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
51058071 ACGTCTATCC
51058081 GTGGTTGTCAAGTGAGTTTCTA
1 GTGGTTGTCAAGTGAGTTTCTA
*
51058103 GTGGTTTTCAAGTGAGTTTCTA
1 GTGGTTGTCAAGTGAGTTTCTA
51058125 AGCTAACTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.30, T:0.43
Consensus pattern (22 bp):
GTGGTTGTCAAGTGAGTTTCTA
Found at i:51060106 original size:40 final size:39
Alignment explanation
Indices: 51060075--51060284 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
51060065 GGACTAAGAT
* *
51060075 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
51060115 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
51060155 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
51060195 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
51060235 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
51060274 CCGAAGGCATT
1 CCGAAGGCATT
51060285 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:51060238 original size:120 final size:120
Alignment explanation
Indices: 51060022--51060284 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
51060012 TTGAATGCTG
* *
51060022 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
51060086 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
51060142 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
51060205 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
51060261 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51060285 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:51060304 original size:79 final size:80
Alignment explanation
Indices: 51060023--51060319 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
51060013 TGAATGCTGT
* ** * * * **
51060023 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
51060086 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
51060103 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
51060167 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
51060183 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
51060247 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
51060262 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
51060320 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:51064354 original size:13 final size:13
Alignment explanation
Indices: 51064336--51064371 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
51064326 GTTGAATATG
51064336 TATATGAAATGGT
1 TATATGAAATGGT
51064349 TATATGAAATGGT
1 TATATGAAATGGT
* *
51064362 CATTTGAAAT
1 TATATGAAAT
51064372 TGATACTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (13 bp):
TATATGAAATGGT
Found at i:51067938 original size:48 final size:45
Alignment explanation
Indices: 51067840--51068061 Score: 191
Period size: 44 Copynumber: 4.8 Consensus size: 45
51067830 TGTGTGTGCT
* *
51067840 AGTGTAAGACATGTCTGGGACATGCGTCGGCCACATT-A-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGAGAGAGAGCC
* *
51067886 AGTGTAAGATCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA-GAGAGCC
* * * *
51067934 AGTGTAAGACATGTCTGGGACATGCATCGAC-TATGAGA-TGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGAGAGAGCC
* ** *
51067978 AGTGTAAGACATATCTGGGACATGCATCGGCACGGATATGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTG--A-GAGAGAGCC
*
51068026 AATGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT
51068062 ATACCCTATG
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 34 0.24
45 5 0.03
46 23 0.16
47 27 0.19
48 32 0.22
49 13 0.09
50 9 0.06
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAGAGAGCC
Found at i:51070224 original size:301 final size:301
Alignment explanation
Indices: 51069682--51070283 Score: 1204
Period size: 301 Copynumber: 2.0 Consensus size: 301
51069672 ACATGGGCAA
51069682 AAGACACGGCCATGTGTCTCAGCCATGTCTTCACACGGCCATAGGACACGGGCATGTGCCTTGGC
1 AAGACACGGCCATGTGTCTCAGCCATGTCTTCACACGGCCATAGGACACGGGCATGTGCCTTGGC
51069747 CGTGCGGCTTCAATTTGTTCATAACCAAATTGGCAGAATGTCCAGGTTTTTGGACACGGGTTTGG
66 CGTGCGGCTTCAATTTGTTCATAACCAAATTGGCAGAATGTCCAGGTTTTTGGACACGGGTTTGG
51069812 GACACAGGCGTGTCCCTAGCACACGGGTGTGTGCTCTATACCTACACGGGCGTGTGGAGCCTTAA
131 GACACAGGCGTGTCCCTAGCACACGGGTGTGTGCTCTATACCTACACGGGCGTGTGGAGCCTTAA
51069877 AGCATGAAATTTTTCCAAGTTTTTCTTAAGTTCTTGTTTTAGTCCCGAACAGTCTCTAATGCATT
196 AGCATGAAATTTTTCCAAGTTTTTCTTAAGTTCTTGTTTTAGTCCCGAACAGTCTCTAATGCATT
51069942 TTTTGGGCCTCGTGAGCCCGTTTAAGGGACAAAATGTATGT
261 TTTTGGGCCTCGTGAGCCCGTTTAAGGGACAAAATGTATGT
51069983 AAGACACGGCCATGTGTCTCAGCCATGTCTTCACACGGCCATAGGACACGGGCATGTGCCTTGGC
1 AAGACACGGCCATGTGTCTCAGCCATGTCTTCACACGGCCATAGGACACGGGCATGTGCCTTGGC
51070048 CGTGCGGCTTCAATTTGTTCATAACCAAATTGGCAGAATGTCCAGGTTTTTGGACACGGGTTTGG
66 CGTGCGGCTTCAATTTGTTCATAACCAAATTGGCAGAATGTCCAGGTTTTTGGACACGGGTTTGG
51070113 GACACAGGCGTGTCCCTAGCACACGGGTGTGTGCTCTATACCTACACGGGCGTGTGGAGCCTTAA
131 GACACAGGCGTGTCCCTAGCACACGGGTGTGTGCTCTATACCTACACGGGCGTGTGGAGCCTTAA
51070178 AGCATGAAATTTTTCCAAGTTTTTCTTAAGTTCTTGTTTTAGTCCCGAACAGTCTCTAATGCATT
196 AGCATGAAATTTTTCCAAGTTTTTCTTAAGTTCTTGTTTTAGTCCCGAACAGTCTCTAATGCATT
51070243 TTTTGGGCCTCGTGAGCCCGTTTAAGGGACAAAATGTATGT
261 TTTTGGGCCTCGTGAGCCCGTTTAAGGGACAAAATGTATGT
51070284 GAAATGAAAA
Statistics
Matches: 301, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
301 301 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (301 bp):
AAGACACGGCCATGTGTCTCAGCCATGTCTTCACACGGCCATAGGACACGGGCATGTGCCTTGGC
CGTGCGGCTTCAATTTGTTCATAACCAAATTGGCAGAATGTCCAGGTTTTTGGACACGGGTTTGG
GACACAGGCGTGTCCCTAGCACACGGGTGTGTGCTCTATACCTACACGGGCGTGTGGAGCCTTAA
AGCATGAAATTTTTCCAAGTTTTTCTTAAGTTCTTGTTTTAGTCCCGAACAGTCTCTAATGCATT
TTTTGGGCCTCGTGAGCCCGTTTAAGGGACAAAATGTATGT
Found at i:51070753 original size:40 final size:40
Alignment explanation
Indices: 51070709--51070791 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
51070699 GCTTTCCCAG
51070709 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
1 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
*
51070749 GATGATAATTAATTATTCAATCATAATCTTTTAGTAGCTT
1 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
51070789 GAT
1 GAT
51070792 CCAACAATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (40 bp):
GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
Found at i:51075540 original size:31 final size:31
Alignment explanation
Indices: 51075504--51075564 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
51075494 AATTAATAAT
*
51075504 CACAAATGATAATAAATTTTATATAATTAAA
1 CACAAATAATAATAAATTTTATATAATTAAA
51075535 CACAAATAATAATAAATTTTATATAATTAA
1 CACAAATAATAATAAATTTTATATAATTAA
51075565 TCATAAGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (31 bp):
CACAAATAATAATAAATTTTATATAATTAAA
Found at i:51075583 original size:35 final size:31
Alignment explanation
Indices: 51075505--51075583 Score: 104
Period size: 31 Copynumber: 2.4 Consensus size: 31
51075495 ATTAATAATC
* *
51075505 ACAAATGATAATAAATTTTATATAATTAAAC
1 ACAAATAATAATAAATTTTATATAATTAAAA
51075536 ACAAATAATAATAAATTTTATATAATTAATCATA
1 ACAAATAATAATAAATTTTATATAATTAA--A-A
51075570 AGCAAATAATAATA
1 A-CAAATAATAATA
51075584 TGATTAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 28 0.67
33 1 0.02
34 1 0.02
35 12 0.29
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (31 bp):
ACAAATAATAATAAATTTTATATAATTAAAA
Found at i:51078524 original size:30 final size:30
Alignment explanation
Indices: 51078488--51078550 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
51078478 ACTTAACAAG
**
51078488 CAAATGTCTCTAAAATATTAACAAAATTAA
1 CAAATGTCTCTAAAATAAGAACAAAATTAA
*
51078518 CAAATGTCTTTAAAATAAGAACAAAATTAA
1 CAAATGTCTCTAAAATAAGAACAAAATTAA
51078548 CAA
1 CAA
51078551 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAAGAACAAAATTAA
Found at i:51078935 original size:13 final size:13
Alignment explanation
Indices: 51078917--51078952 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 13
51078907 TAGATTTTTC
51078917 CTAAATATTATCA
1 CTAAATATTATCA
51078930 CTAAATA--ATC-
1 CTAAATATTATCA
51078940 CTAAATATTATCA
1 CTAAATATTATCA
51078953 TTTCAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.35
11 3 0.15
12 3 0.15
13 7 0.35
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:51079358 original size:16 final size:16
Alignment explanation
Indices: 51079322--51079374 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
51079312 TTGGTTGGTT
* *
51079322 GTAATGGAATAGGGCT
1 GTAATGGAATAGAGCC
* *
51079338 ATAATTGAATAGAGCC
1 GTAATGGAATAGAGCC
*
51079354 GTAATGGAATAGAGCT
1 GTAATGGAATAGAGCC
51079370 GTAAT
1 GTAAT
51079375 AAGTAATTCA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (16 bp):
GTAATGGAATAGAGCC
Found at i:51079408 original size:46 final size:43
Alignment explanation
Indices: 51079356--51079448 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
51079346 ATAGAGCCGT
*
51079356 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-A-TCAACTGTTTGGTTGAATGG
* ***
51079402 AATGGAATAGAATTGTAATAGTATCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATCAACTGTTTGGTTGAATGG
51079445 AATG
1 AATG
51079449 ATGTTGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 21 0.50
44 1 0.02
45 3 0.07
46 17 0.40
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (43 bp):
AATGGAATAGAACTGTAATAGTATCAACTGTTTGGTTGAATGG
Found at i:51092777 original size:23 final size:23
Alignment explanation
Indices: 51092751--51092798 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
51092741 GATTAAGTCC
51092751 TATTATTATATTAAGCATACAAA
1 TATTATTATATTAAGCATACAAA
51092774 TATTATTATATTAAGCATACAAA
1 TATTATTATATTAAGCATACAAA
51092797 TA
1 TA
51092799 ATCAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (23 bp):
TATTATTATATTAAGCATACAAA
Found at i:51094448 original size:26 final size:26
Alignment explanation
Indices: 51094419--51094470 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
51094409 ATAATGACCA
51094419 TACCTCGTCCGAGAAGCAGTTTTCGG
1 TACCTCGTCCGAGAAGCAGTTTTCGG
* * *
51094445 TACCTTGTCCGATAAGTAGTTTTCGG
1 TACCTCGTCCGAGAAGCAGTTTTCGG
51094471 CACATCCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (26 bp):
TACCTCGTCCGAGAAGCAGTTTTCGG
Found at i:51097549 original size:40 final size:40
Alignment explanation
Indices: 51097505--51097766 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
51097495 GCTCCTCGTT
* *
51097505 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
51097545 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51097585 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51097624 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51097663 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
51097702 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
51097743 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51097767 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:51100381 original size:45 final size:45
Alignment explanation
Indices: 51100331--51100416 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
51100321 TTAAAACATG
51100331 TGTCACATATATCATGAACTCAGACCACAACTCT-ATGAGTTTGGA
1 TGTCACATATATCATGAACTCAGACCACAACT-TAATGAGTTTGGA
51100376 TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTT
1 TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTT
51100417 CAGATTACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 1 0.03
45 39 0.98
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTTTGGA
Found at i:51106680 original size:5 final size:6
Alignment explanation
Indices: 51106665--51106690 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
51106655 TGACATGGTG
51106665 GGGGGA GGGGGA GGGGGA GGGGGA GG
1 GGGGGA GGGGGA GGGGGA GGGGGA GG
51106691 ATTAAAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.85, T:0.00
Consensus pattern (6 bp):
GGGGGA
Found at i:51121508 original size:26 final size:26
Alignment explanation
Indices: 51121479--51121531 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
51121469 TTTTTAACTG
51121479 TAATGATGCAGTTTTTATTGAGCCTT
1 TAATGATGCAGTTTTTATTGAGCCTT
51121505 TAATGATGCAGTTTTTATTGAGCCTT
1 TAATGATGCAGTTTTTATTGAGCCTT
51121531 T
1 T
51121532 CTCATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (26 bp):
TAATGATGCAGTTTTTATTGAGCCTT
Found at i:51127703 original size:13 final size:13
Alignment explanation
Indices: 51127687--51127712 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51127677 AGAAGAATGA
51127687 ATTGATTCCTACC
1 ATTGATTCCTACC
51127700 ATTGATTCCTACC
1 ATTGATTCCTACC
51127713 CACATAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (13 bp):
ATTGATTCCTACC
Found at i:51129637 original size:27 final size:27
Alignment explanation
Indices: 51129607--51129750 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
51129597 TACTGAAATG
*
51129607 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
51129634 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
** ** * *
51129661 CCCTTAATTTGCAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
51129688 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
51129715 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
51129742 CCCTCGATT
1 CCCTCGATT
51129751 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:51129812 original size:27 final size:27
Alignment explanation
Indices: 51129782--51130017 Score: 165
Period size: 27 Copynumber: 8.7 Consensus size: 27
51129772 TATAGGATAG
*
51129782 AATTACCACAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
51129809 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
51129836 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
51129863 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
51129890 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* *
51129917 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
* * * **
51129946 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
** * *
51129973 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
51130000 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
51130018 GTAGGATGAA
Statistics
Matches: 163, Mismatches: 38, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
26 3 0.02
27 134 0.82
28 8 0.05
29 18 0.11
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:51129827 original size:54 final size:53
Alignment explanation
Indices: 51129749--51129904 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 53
51129739 TTACCCTCGA
* * *
51129749 TTGTGAAATTACTGAAATACCCCTA-TAGGATAGAATTACCACAATACC-CTTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTA-G-TAAAATTACCAAAATACCAC-TAGT
* * * *
51129803 TTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAG-TAGTAAAATTACCAAAATACCACTAGT
* * *
51129857 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCC-CTAGTAGTAAAATTACCAAAATACC
51129905 CCTGATTTAC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
54 79 0.93
55 4 0.05
56 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (53 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGTAAAATTACCAAAATACCACTAGT
Found at i:51129919 original size:81 final size:81
Alignment explanation
Indices: 51129782--51129931 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
51129772 TATAGGATAG
* * *
51129782 AATTACCACAATACCCTTAGTTTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCA-AA
1 AATTACCACAATACCCTCAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTA-CAGAA
51129846 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
* *
51129863 AATTACCGA-AATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTA-CAAAATTACAGA
1 AATTACC-ACAATACCCTCAATTTGTAAAATTACCAAAACACCCCT-AGTTAGCAAAATTACAGA
51129926 AATACC
64 AATACC
51129932 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
80 2 0.03
81 54 0.89
82 5 0.08
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (81 bp):
AATTACCACAATACCCTCAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:51130079 original size:27 final size:27
Alignment explanation
Indices: 51130036--51130109 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
51130026 AAATGACTAA
*
51130036 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
51130063 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
51130090 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
51130110 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:51130858 original size:20 final size:20
Alignment explanation
Indices: 51130792--51130858 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
51130782 ATTTTAGTAA
*
51130792 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
51130812 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
51130832 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51130852 ACATGAT
1 ACATGAT
51130859 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51130939 original size:23 final size:23
Alignment explanation
Indices: 51130909--51130981 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
51130899 AGGAAGTGCA
51130909 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51130932 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51130955 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
51130979 AAA
1 AAA
51130982 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51130998 original size:25 final size:24
Alignment explanation
Indices: 51130908--51131002 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
51130898 GAGGAAGTGC
51130908 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
51130932 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51130955 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
51130979 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51131003 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:51131231 original size:31 final size:31
Alignment explanation
Indices: 51131196--51131259 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51131186 CGTTTACAGT
51131196 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51131227 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51131258 AA
1 AA
51131260 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51139343 original size:40 final size:40
Alignment explanation
Indices: 51139295--51139500 Score: 369
Period size: 40 Copynumber: 5.2 Consensus size: 40
51139285 GGACTAAGAT
*
51139295 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
51139335 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
51139375 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
51139415 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
51139455 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
51139494 CCGAAGG
1 CCGAAGG
51139501 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 15 0.09
40 147 0.91
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:51141937 original size:37 final size:37
Alignment explanation
Indices: 51141887--51141961 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
51141877 GCTATATAAC
51141887 TTAGTTGCATGTAATCCACTCTAGGGTAAACCTCAAT
1 TTAGTTGCATGTAATCCACTCTAGGGTAAACCTCAAT
51141924 TTAGTTGCATGTAATCCACTCTAGGGTAAACCTCAAT
1 TTAGTTGCATGTAATCCACTCTAGGGTAAACCTCAAT
51141961 T
1 T
51141962 AAACATTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (37 bp):
TTAGTTGCATGTAATCCACTCTAGGGTAAACCTCAAT
Found at i:51144366 original size:19 final size:19
Alignment explanation
Indices: 51144342--51144379 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
51144332 TAAAATTAGT
51144342 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
51144361 TTTTCTGAAATATTATTTA
1 TTTTCTAAAATATTATTTA
51144380 CAGATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:51145377 original size:42 final size:42
Alignment explanation
Indices: 51145313--51145398 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
51145303 AGGGAGCATA
* * * **
51145313 ATCACTTCAGCTCATATGGGGAGCTTCGTTGATACACAACTT
1 ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
* *
51145355 ATCACTTAAACTCATGTAGGGAGCTTCACTGATACCCAACTT
1 ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
51145397 AT
1 AT
51145399 AAAACCATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
Found at i:51150328 original size:29 final size:29
Alignment explanation
Indices: 51150284--51150341 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
51150274 TTAAAATGTC
51150284 AGAATAGTGAGACATTTCATATTGAATCA
1 AGAATAGTGAGACATTTCATATTGAATCA
* *
51150313 AGAATAGTTAGGCATTTCATATTGAATCA
1 AGAATAGTGAGACATTTCATATTGAATCA
51150342 GATAATCCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (29 bp):
AGAATAGTGAGACATTTCATATTGAATCA
Found at i:51159101 original size:14 final size:14
Alignment explanation
Indices: 51159082--51159108 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51159072 TCAATATTGT
51159082 TCATATCCACAATC
1 TCATATCCACAATC
51159096 TCATATCCACAAT
1 TCATATCCACAAT
51159109 TTATGCAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (14 bp):
TCATATCCACAATC
Found at i:51168454 original size:39 final size:39
Alignment explanation
Indices: 51168400--51168561 Score: 195
Period size: 39 Copynumber: 4.2 Consensus size: 39
51168390 TTCAGTGATG
*
51168400 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
51168439 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTAGAA-
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
51168477 -ATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
51168515 TATAACCAGG-CTTAAGGTCTGTAGGCTACGTGCTGGAAA
1 TATATCC-GGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
51168554 TATGTCCG
1 TATATCCG
51168562 AGCTAAAGTC
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
37 33 0.31
38 1 0.01
39 71 0.67
40 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:51168541 original size:76 final size:76
Alignment explanation
Indices: 51168401--51168556 Score: 215
Period size: 76 Copynumber: 2.1 Consensus size: 76
51168391 TCAGTGATGT
* * * *
51168401 ATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCT
1 ATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCT
* *
51168466 ATGTGTTAGAA
66 ACGTGCTAGAA
* *
51168477 ATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCAGG-CTTAAGGTCTGTAGGC
1 ATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACC-GGACTTAAGGTCCGCAGGC
*
51168541 TACGTGCTGGAA
65 TACGTGCTAGAA
51168553 ATAT
1 ATAT
51168557 GTCCGAGCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
76 68 0.97
77 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (76 bp):
ATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCT
ACGTGCTAGAA
Found at i:51176619 original size:39 final size:39
Alignment explanation
Indices: 51176556--51176708 Score: 207
Period size: 39 Copynumber: 3.9 Consensus size: 39
51176546 CATTGATGTT
* *
51176556 TATCTGGACTTAGGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
* *
51176595 TATCCGGACTTAGGGTCCATAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
* *
51176634 TATCCGGACTTAAGGTTCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
* * * * *
51176673 CAACCGGACTTAAGGTTCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAA
51176709 ATATGTCCAG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
Found at i:51176734 original size:78 final size:78
Alignment explanation
Indices: 51176556--51176736 Score: 195
Period size: 78 Copynumber: 2.3 Consensus size: 78
51176546 CATTGATGTT
* ** * * * * *
51176556 TATCTGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCATAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCGGACTTAAGGTCCACAGGCTA
* *
51176621 TGTGCTGGAATTA
66 CGTGCTGGAAATA
* * * *
51176634 TATCCGGACTTAAGGTTCGCAGGCTATGTGCTGGAATTACAACCGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCGGACTTAAGGTCCACAGGCTA
51176699 CGTGCTGGAAATA
66 CGTGCTGGAAATA
*
51176712 TGTCCAGG-C-TAAAGTCCTGCAGGCT
1 TATCC-GGACTTAAAGTCC-GCAGGCT
51176737 TCGAGCTGGT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
77 6 0.07
78 78 0.91
79 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCGGACTTAAGGTCCACAGGCTA
CGTGCTGGAAATA
Found at i:51178415 original size:47 final size:48
Alignment explanation
Indices: 51178319--51178447 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 48
51178309 GTGCGAATAA
* * ** * *
51178319 TACCTTGATTTTGCTAC-GGCCATGGTAGAGGTA-TTTAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
* *
51178365 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAG-GATAACT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
*
51178412 TACCTTGATTTGGCTATGGGCCATGGTAAAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACT
51178448 TATCGATTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 16 0.22
47 53 0.74
48 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
Found at i:51180293 original size:42 final size:42
Alignment explanation
Indices: 51180196--51180362 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 42
51180186 CGATATGTGT
* * * **
51180196 TTTCGTGTGAGACTACATCTGGGACATTGGCATCGGCTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATT-TGA
* *
51180239 TTTACGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
* * * *
51180282 TTTCGTGTAAGACC-CTGTCTGGAACAATGGCATCACTATTTTA
1 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC-GTATTTGA
* * *
51180325 TTACATGTAAGACCACGTCTGGGACATTGGCATTGTAT
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTAT
51180363 GAGCTTTCCA
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.28
43 42 0.42
44 30 0.30
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
Found at i:51183929 original size:137 final size:138
Alignment explanation
Indices: 51183546--51184062 Score: 737
Period size: 137 Copynumber: 3.8 Consensus size: 138
51183536 CATGAATTAA
* * *
51183546 ATTAATTGTATATATTTTACCGAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* *
51183611 ATATAAGAGACATG-------GTATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
66 ATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
51183669 TACAAAAT
131 TACAAAAT
* * *
51183677 ATTAATTGTATATATTTTACCGAATTTATTTATATAAACAATTATATTAATTAATTTCAGTAAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* *
51183742 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATGATTAATATATGAATTTGATTCA
66 ATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
*
51183807 TAAAAAAT
131 TACAAAAT
* * *
51183815 ATTAATTGTATATATTTTACCGGATTTATTAATATAAA-ATTTATATTAATTAATTTTGGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* * ** * *
51183879 ATATAAAAGACATAAAAATTAATATTGTTTTGGAAAGAATATAAACAATATACGAA-TTAATTCA
66 ATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
51183943 TACAAAAT
131 TACAAAAT
* *
51183951 ATTAGTTGTATCTATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* * *
51184016 ATATAAAAGACATGGAAATTAATATTCTCTTTGAAAAAAATATAATT
66 ATATAAAAGACATGAAAATTAATATTCT-TTTGGAAAGAATATAATT
51184063 CGTTTTTCTA
Statistics
Matches: 343, Mismatches: 34, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
131 74 0.22
136 49 0.14
137 122 0.36
138 98 0.29
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
ATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
TACAAAAT
Found at i:51193605 original size:138 final size:137
Alignment explanation
Indices: 51193357--51194181 Score: 1013
Period size: 138 Copynumber: 6.1 Consensus size: 137
51193347 AGAAAAAATG
*
51193357 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGA-TCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACT-AAAATTAATTA
* *
51193421 ATATAAATGTTTATATTAATATATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
64 ATATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAAT
51193486 TCATATATT
129 TCATATATT
* * * *
51193495 AATTATATTCTTTCCAAAAGAATATTAATTTCCTTATCTTATATATTTTGACTTAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTT-TATATTTTGACTAAAATTAATTAA
* * *
51193560 TATAATTGTTCATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAACCAAATT
65 TATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
51193625 CATATATT
130 CATATATT
* *
51193633 AATTATATTCTCTCCAAAAGAATATTAATTTTCATGTCATTTATATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
* * * * **
51193698 TATAACTATTTATATTAATAAATTCGGTAAAATCTTTATATTATTAATATTTTGTATGAATCAAA
65 TATAAATGTTTATATTAATAAATTCAGTAAAA--TATATAAAATTAATATTTTGTATGAATCAAA
51193763 TTCATATATT
128 TTCATATATT
* **
51193773 AATTATATTCTTT-C----------T-A---GCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
** * ** *
51193823 TATAGCTGTTTATATTAATAAATTCGGTAAAATATTTATATTATTAATATTTTGTATGGATCAAA
65 TATAAATGTTTATATTAATAAATTCAGTAAAATA--TATAAAATTAATATTTTGTATGAATCAAA
51193888 TTCATATATT
128 TTCATATATT
* **
51193898 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
* *
51193963 TATAACTGTTTATATTAACAAATTCAGTAAAATATA-AACAATTAATATTTTGTATGAATCAAAT
65 TATAAATGTTTATATTAATAAATTCAGTAAAATATATAA-AATTAATATTTTGTATGAATCAAAT
*
51194027 TCATCTATT
129 TCATATATT
* * * *
51194036 AATTATA-TCATTTCCAAAAGAATATTAATTTCAATGTATTTTATATTTTGGCTGAAATTAATTA
1 AATTATATTC-TTTCCAAAAGAATATTAATTTCCATGT-CTTTATATTTTGACTAAAATTAATTA
* *** *
51194100 ATATAACTGTTTATATTAATAAATT-ATGTAAAATATAGGCAATTAATATTTTGTATGAATGAAA
64 ATATAAATGTTTATATTAATAAATTCA-GTAAAATATATAAAATTAATATTTTGTATGAATCAAA
51194164 TTCATATATT
128 TTCATATATT
51194174 AATTATAT
1 AATTATAT
51194182 CTATGCTCTC
Statistics
Matches: 608, Mismatches: 51, Indels: 55
0.85 0.07 0.08
Matches are distributed among these distances:
123 1 0.00
125 111 0.18
128 1 0.00
129 1 0.00
136 1 0.00
137 7 0.01
138 369 0.61
139 4 0.01
140 113 0.19
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTATATTTTGACTAAAATTAATTAAT
ATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:51193816 original size:125 final size:125
Alignment explanation
Indices: 51193665--51193913 Score: 435
Period size: 125 Copynumber: 2.0 Consensus size: 125
51193655 TATTAATTTT
*
51193665 CATGTCATTTATATTTTGACTAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
1 CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
*
51193730 TCTTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
66 TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
* * * *
51193790 CATGTCTTTTATATTTTGACCGAAATTAATTAATATAGCTGTTTATATTAATAAATTCGGTAAAA
1 CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
*
51193855 TATTTATATTATTAATATTTTGTATGGATCAAATTCATATATTAATTATATTCTTTCTA
66 TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTA
51193914 AAAGAATATT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 117 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (125 bp):
CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
Found at i:51193943 original size:265 final size:261
Alignment explanation
Indices: 51193531--51194181 Score: 766
Period size: 265 Copynumber: 2.4 Consensus size: 261
51193521 AATTTCCTTA
** * *
51193531 TCTTATATATTTTGACTTAAATTAATTAGTATAATTGTTCATATTAATAAATTCAGTAAAATATA
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATATA
51193596 TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
66 TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
* * * *
51193661 TTTTCATGTCATTTATATTTTGACTAAAATTAATTAATATAACTATTTATATTAATAAATTCGGT
131 TTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCAGT
* * **
51193726 AAAATCTTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGC
196 AAAA--TATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGC
51193791 ATG
259 ATG
* * * *
51193794 TCTTTTATATTTTGACCGAAATTAATTAATATAGCTGTTTATATTAATAAATTCGGTAAAATATT
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATA--
** * * * *
51193859 TATATTATTAATATTTTGTATGGATCAAATTCATATATTAATTATATTCTTTCTAAAAGAATATT
64 TATAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATT
* * *
51193924 AATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAACAAATTCA
129 AATTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCA
*
51193989 GTAAAATATAAACAATTAATATTTTGTATGAATCAAATTCATCTATTAATTATA-TCATTTCCAA
194 GTAAAATATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTC-TTT-C--
*
51194053 AAGAATATTAATTTCAATG
255 --------T-A--GC-ATG
* * * * *
51194072 TATTTTATATTTTGGCTGAAATTAATTAATATAACTGTTTATATTAATAAATT-ATGTAAAATAT
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCA-GTAAAATAT
*** **
51194136 AGGCAATTAATATTTTGTATGAATGAAATTCATATATTAATTATAT
65 ATAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATAT
51194182 CTATGCTCTC
Statistics
Matches: 331, Mismatches: 38, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
262 2 0.01
263 101 0.31
264 1 0.00
265 123 0.37
274 1 0.00
275 1 0.00
276 41 0.12
277 1 0.00
278 60 0.18
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (261 bp):
TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATATA
TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
TTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCAGT
AAAATATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGCAT
G
Found at i:51196846 original size:17 final size:19
Alignment explanation
Indices: 51196824--51196861 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51196814 TGAGAGAAGG
*
51196824 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
51196841 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
51196860 AT
1 AT
51196862 CCTAAAGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 2 0.11
19 10 0.56
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:51197928 original size:22 final size:20
Alignment explanation
Indices: 51197883--51197928 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
51197873 ATACATGCAG
51197883 TAATATTTTTCTAATAATAA
1 TAATATTTTTCTAATAATAA
* *
51197903 TAATAATTTTATCTCATAATAC
1 TAAT-ATTTT-TCTAATAATAA
51197925 TAAT
1 TAAT
51197929 TAAAATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 5 0.23
22 13 0.59
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATATTTTTCTAATAATAA
Found at i:51199981 original size:60 final size:60
Alignment explanation
Indices: 51199903--51200039 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
51199893 CAGTGTTAAC
* *
51199903 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
51199964 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
51200024 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
51200040 TAACATAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:51200003 original size:28 final size:27
Alignment explanation
Indices: 51199902--51200003 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
51199892 TCAGTGTTAA
* *
51199902 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
51199930 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
51199962 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
51199990 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
51200004 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:51203071 original size:137 final size:138
Alignment explanation
Indices: 51202825--51203208 Score: 583
Period size: 137 Copynumber: 2.8 Consensus size: 138
51202815 AATATATGAA
51202825 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTC-AAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* * * *
51202889 ATAAAAGACATGGAAATTAGTGTTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATT
66 ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
*
51202954 CACAATAT
131 CAAAATAT
* * * *
51202962 TAATTGTATATATTTTACCGAATTTATTAATATAAATAGTTATATTACTTAATTTCGGTCAAAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* * *
51203027 ATAAAAGATATGGAAATTAAT-TTTTTTTGGAAATAATATAATTAATATATGAATTTGATTTATA
66 ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
51203091 CAAAATAT
131 CAAAATAT
** * *
51203099 TAATTGTATATATTTTACCGAAGGTATTAATATAAACAATTATATTAATTAATTTCAATCAAAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* *
51203164 ATAAAAGACATAGAAATTAATATTCTTTTTGAAAAGAATATAATT
66 ATAAAAGACATGGAAATTAATATT-TTTTTGGAAAGAATATAATT
51203209 CATTTTTCTA
Statistics
Matches: 222, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
137 179 0.81
138 25 0.11
139 18 0.08
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (138 bp):
TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
CAAAATAT
Found at i:51209313 original size:43 final size:42
Alignment explanation
Indices: 51209266--51209361 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
51209256 TAGACGTGGT
* * *
51209266 CTTACATGTAATCAAACATCGATGCCGCTGTCCGAGATAAGGG
1 CTTACATGTAATCAAACA-CGATGCCGATGTCCCAGACAAGGG
* * * * * *
51209309 CTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGT
1 CTTACATGTAATCAAACACGATGCCGATGTCCCAGACAAGGG
51209351 CTTACATGTAA
1 CTTACATGTAA
51209362 AGCAAAAGTG
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
42 28 0.67
43 14 0.33
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (42 bp):
CTTACATGTAATCAAACACGATGCCGATGTCCCAGACAAGGG
Found at i:51209355 original size:42 final size:42
Alignment explanation
Indices: 51209252--51209403 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 42
51209242 CAATGCCAAC
* * * * *
51209252 GTCCTAGACGTGGTCTTACATGTAATCAAACATCGATGCCGCT
1 GTCCTAGACATGGTCTTACACGAAATCAAA-AGCGATGCCGAT
* * * * *
51209295 GTCCGAGATAAGGGCTTACACGAAATCAGATA-CGATGCCGAT
1 GTCCTAGACATGGTCTTACACGAAATCA-AAAGCGATGCCGAT
* * * * *
51209337 GTCCCAGACATGGTCTTACATGTAAAGCAAAAGTGATGCCAAT
1 GTCCTAGACATGGTCTTACACG-AAATCAAAAGCGATGCCGAT
*
51209380 GTCCTAGACATGGTTTTACACGAA
1 GTCCTAGACATGGTCTTACACGAA
51209404 TTCACATATC
Statistics
Matches: 85, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
42 30 0.35
43 54 0.64
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (42 bp):
GTCCTAGACATGGTCTTACACGAAATCAAAAGCGATGCCGAT
Found at i:51212195 original size:48 final size:48
Alignment explanation
Indices: 51212058--51212227 Score: 180
Period size: 48 Copynumber: 3.5 Consensus size: 48
51212048 ATGAGATCTC
* ****
51212058 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGACAGCCA
1 GTGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGTCCCA
* * *
51212106 GTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGTGTCCCA
1 GTGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGTCCCA
* * * * **
51212154 GTGTAAGACTATATCTGGGATATGGCATCGGCCTTGGTATGTGATTTCA
1 GTGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTG-TCCCA
* *
51212203 -TGTTAGACCATATCTGGGATATGGC
1 GTGTAAGACCATATCTGGGACATGGC
51212228 TTTGATATGA
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
48 101 0.97
49 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGTCCCA
Found at i:51213699 original size:22 final size:22
Alignment explanation
Indices: 51213674--51213723 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
51213664 GTGTGAAGGG
51213674 CACACGGGCGTGTCCTTGTGTC
1 CACACGGGCGTGTCCTTGTGTC
51213696 CACACGGGCGTGTCCTTGTGTC
1 CACACGGGCGTGTCCTTGTGTC
51213718 CACACG
1 CACACG
51213724 AGCATGTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.12, C:0.34, G:0.30, T:0.24
Consensus pattern (22 bp):
CACACGGGCGTGTCCTTGTGTC
Found at i:51221787 original size:39 final size:40
Alignment explanation
Indices: 51221692--51221953 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
51221682 TTGAATGATG
*
51221692 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
51221730 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51221771 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
51221810 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51221849 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
51221888 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
51221927 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51221954 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51235435 original size:48 final size:48
Alignment explanation
Indices: 51235334--51235437 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 48
51235324 ATGAGATTCG
* * * **
51235334 GTGTAAGACCATGTCTGGGACATGTCATCGGTGTTGATATGAGAGCCA
1 GTGTAAGAACATGTCTGGGACATGACATCAGCATTGATATGAGAGCCA
* * *
51235382 ATGTAAGAACATGTTTGGGACATGACATCAGCATTGATAT-ATGTGCCA
1 GTGTAAGAACATGTCTGGGACATGACATCAGCATTGATATGA-GAGCCA
51235430 GTGTAAGA
1 GTGTAAGA
51235438 CCATATCTAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
47 1 0.02
48 45 0.98
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (48 bp):
GTGTAAGAACATGTCTGGGACATGACATCAGCATTGATATGAGAGCCA
Found at i:51235553 original size:42 final size:42
Alignment explanation
Indices: 51235472--51235591 Score: 116
Period size: 42 Copynumber: 2.9 Consensus size: 42
51235462 CTCAGAATGT
* * * * ** * *
51235472 GATTTCATGTTAGACCATATCTGGGATATGGTGTTGATATGA
1 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATATAA
51235514 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATATAA
1 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATATAA
* * * *
51235556 G-GTCCTGTATAAGACCATGTCTAGGACATGGCATCG
1 GATTTC-GTGTAAGACCATGTCTGGGACATGGCATCG
51235592 GCACCCACAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 2 0.03
42 63 0.97
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATATAA
Found at i:51246648 original size:40 final size:39
Alignment explanation
Indices: 51246559--51246721 Score: 147
Period size: 39 Copynumber: 4.1 Consensus size: 39
51246549 TTGAATGATG
* *
51246559 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTATA
*
51246598 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTATA
* *
51246637 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
* * **
51246677 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATA-CTATA
51246717 TCCGG
1 TCCGG
51246722 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
39 54 0.52
40 41 0.39
41 8 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTATA
Found at i:51246654 original size:39 final size:41
Alignment explanation
Indices: 51246559--51246702 Score: 160
Period size: 39 Copynumber: 3.6 Consensus size: 41
51246549 TTGAATGATG
*
51246559 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
51246598 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
51246638 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
51246677 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51246703 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
38 2 0.02
39 50 0.55
40 27 0.30
41 11 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:51246721 original size:79 final size:79
Alignment explanation
Indices: 51246559--51246708 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 79
51246549 TTGAATGATG
*
51246559 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
**
51246624 TGCGAGATACTAAT
66 AACGAGATACTAAT
* * * * *
51246638 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAACCGGACTAAGAT-CCGAAGGCAT
51246700 TTGAACGAG
63 TTGAACGAG
51246709 TAGCTATATC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 10 0.17
79 44 0.73
80 6 0.10
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGATACTAAT
Found at i:51254801 original size:19 final size:18
Alignment explanation
Indices: 51254758--51254808 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
51254748 TGACAGATTC
*
51254758 TATTATTTGA-TTTCTTGT
1 TATTATTT-ATTTTCTTAT
51254776 TATTTATTTATTTCTCTTAT
1 TA-TTATTTATTT-TCTTAT
51254796 TATTATTTATTTT
1 TATTATTTATTTT
51254809 AAAAATTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 4 0.14
19 18 0.62
20 7 0.24
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.71
Consensus pattern (18 bp):
TATTATTTATTTTCTTAT
Found at i:51259694 original size:84 final size:83
Alignment explanation
Indices: 51259560--51259727 Score: 318
Period size: 84 Copynumber: 2.0 Consensus size: 83
51259550 ACCTCTATAC
51259560 AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
1 AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
51259625 ATACGTTTGACCATACAT
66 ATACGTTTGACCATACAT
51259643 AATACCTGAGCTAAAAAACAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTA
1 AATACCTGAGCTAAAAAA-AATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTA
*
51259708 TATATGTTTGACCATACAT
65 TATACGTTTGACCATACAT
51259727 A
1 A
51259728 TTGAGGGTTA
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 18 0.22
84 65 0.78
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (83 bp):
AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
ATACGTTTGACCATACAT
Found at i:51260865 original size:11 final size:11
Alignment explanation
Indices: 51260849--51260876 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
51260839 GGGCCATAAA
51260849 ATTTCATTCAT
1 ATTTCATTCAT
51260860 ATTTCATTCAT
1 ATTTCATTCAT
51260871 ATTTCA
1 ATTTCA
51260877 GAACGTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.54
Consensus pattern (11 bp):
ATTTCATTCAT
Found at i:51271197 original size:26 final size:26
Alignment explanation
Indices: 51271168--51271275 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
51271158 TGGTACAAAT
51271168 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51271194 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51271220 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51271246 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51271272 TGAT
1 TGAT
51271276 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51272788 original size:26 final size:26
Alignment explanation
Indices: 51272759--51272811 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
51272749 TTTACAGTTT
51272759 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
51272785 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
51272811 T
1 T
51272812 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:51276564 original size:39 final size:39
Alignment explanation
Indices: 51276521--51276636 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
51276511 CTGGACATAT
* * *
51276521 TTCCAGCACGTAGCCTGTGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
51276560 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
51276599 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
51276637 CATCATTGAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:51277136 original size:54 final size:54
Alignment explanation
Indices: 51277077--51277183 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
51277067 AAATGAAGTT
51277077 TTCTCCCCTTTCCTCTCTTACATTTCGGCCCAAAAGAACAAAGGTGAAGCTTTA
1 TTCTCCCCTTTCCTCTCTTACATTTCGGCCCAAAAGAACAAAGGTGAAGCTTTA
*
51277131 TTCTCCCCTTTCCTCTCTTACATTTCGGCCCAGAAGAACAAAGGTGAAGCTTT
1 TTCTCCCCTTTCCTCTCTTACATTTCGGCCCAAAAGAACAAAGGTGAAGCTTT
51277184 GTTTTCATCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (54 bp):
TTCTCCCCTTTCCTCTCTTACATTTCGGCCCAAAAGAACAAAGGTGAAGCTTTA
Found at i:51278673 original size:17 final size:17
Alignment explanation
Indices: 51278647--51278680 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51278637 AAATTATGAA
*
51278647 GCACACGGCCGTGTGTC
1 GCACAAGGCCGTGTGTC
51278664 GCACAAGGCCGTGTGTC
1 GCACAAGGCCGTGTGTC
51278681 ACTTGTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (17 bp):
GCACAAGGCCGTGTGTC
Found at i:51281093 original size:3 final size:3
Alignment explanation
Indices: 51281085--51281121 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
51281075 AAATTAGAAT
51281085 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
51281122 ATTCAATTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:51284140 original size:47 final size:47
Alignment explanation
Indices: 51284077--51284230 Score: 245
Period size: 47 Copynumber: 3.3 Consensus size: 47
51284067 CCCTTCGGGA
* *
51284077 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
51284124 CTTATCACATATATACACTTTCACATTCATCACATTGGCCGTTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
51284171 CTTATCTCATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
51284218 CTTATCACATATA
1 CTTATCACATATA
51284231 CATATCTTGT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:51287979 original size:7 final size:7
Alignment explanation
Indices: 51287967--51287991 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51287957 CTTACTTTCA
51287967 CCATTTT
1 CCATTTT
51287974 CCATTTT
1 CCATTTT
51287981 CCATTTT
1 CCATTTT
51287988 CCAT
1 CCAT
51287992 CAACCCCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (7 bp):
CCATTTT
Found at i:51291563 original size:15 final size:15
Alignment explanation
Indices: 51291543--51291573 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51291533 GTCATGTAAG
51291543 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
51291558 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
51291573 T
1 T
51291574 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:51291764 original size:17 final size:17
Alignment explanation
Indices: 51291731--51291769 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
51291721 TAAGCTTTTG
51291731 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
51291748 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
51291765 ATTTT
1 ATTTT
51291770 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:51292535 original size:15 final size:15
Alignment explanation
Indices: 51292511--51292540 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51292501 TGGAGATCGA
*
51292511 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
51292526 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
51292541 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:51295922 original size:15 final size:15
Alignment explanation
Indices: 51295902--51295932 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51295892 GTCATGTAAG
51295902 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
51295917 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
51295932 T
1 T
51295933 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:51302465 original size:15 final size:15
Alignment explanation
Indices: 51302445--51302475 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51302435 AATTATATAA
51302445 TTCAGATATAGCCCT
1 TTCAGATATAGCCCT
51302460 TTCAGATATAGCCCT
1 TTCAGATATAGCCCT
51302475 T
1 T
51302476 CTTTAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (15 bp):
TTCAGATATAGCCCT
Found at i:51305023 original size:40 final size:40
Alignment explanation
Indices: 51304968--51305085 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
51304958 TGGAAAAGAA
* *
51304968 TATAATCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
51305008 TATAACCGGGTTAAGTCCCGAAGGCATTCATGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
51305048 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
51305086 GTTACATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:51312039 original size:75 final size:75
Alignment explanation
Indices: 51311929--51312077 Score: 262
Period size: 75 Copynumber: 2.0 Consensus size: 75
51311919 AATTACTAAG
* * *
51311929 TTCCTTATTAGACCCATGTTAACTTTTTGATATTTGGTGAATGAATATGGTTTTCGGTCATGGTA
1 TTCCTTATTACACCCATGTTAAATTTTTGATATTTGGTGAATGAATATGGTTTTCAGTCATGGTA
51311994 AATAATAAAA
66 AATAATAAAA
*
51312004 TTCCTTATTACACCCATGTTAAATTTTTTATATTTGGTGAATGAATATGGTTTTCAGTCATGGTA
1 TTCCTTATTACACCCATGTTAAATTTTTGATATTTGGTGAATGAATATGGTTTTCAGTCATGGTA
51312069 AATAATAAA
66 AATAATAAA
51312078 GAATGTGGTT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (75 bp):
TTCCTTATTACACCCATGTTAAATTTTTGATATTTGGTGAATGAATATGGTTTTCAGTCATGGTA
AATAATAAAA
Found at i:51313383 original size:40 final size:40
Alignment explanation
Indices: 51313328--51313405 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
51313318 TGGAAAAAAA
*
51313328 TATAACCGGGTTAAGT-CTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGCTAAGTCCT-GAAGGCATTCGTGCGGGTTAT
* *
51313368 TATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTGGTT
1 TATAACCGGGCTAAGTCCTGAAGGCATTCGTGCGGGTT
51313406 GTTACATCTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (40 bp):
TATAACCGGGCTAAGTCCTGAAGGCATTCGTGCGGGTTAT
Found at i:51337672 original size:40 final size:40
Alignment explanation
Indices: 51336669--51337660 Score: 1858
Period size: 40 Copynumber: 24.8 Consensus size: 40
51336659 GAGAATTAAG
* *
51336669 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
51336709 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * *
51336749 AGTGATATATCCGGGCTAAGTCTCGAAGAACATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336789 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336829 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336869 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336909 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336949 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51336989 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337029 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337069 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337109 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337149 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337189 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337229 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337269 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337309 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337349 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337389 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337429 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337469 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337509 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
51337549 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
51337589 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
51337629 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
51337661 ATCATGCTGG
Statistics
Matches: 935, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 935 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:51344897 original size:150 final size:150
Alignment explanation
Indices: 51344626--51344930 Score: 601
Period size: 150 Copynumber: 2.0 Consensus size: 150
51344616 ATGAAAAATT
51344626 TGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAATAGTGAAACAGGGGAAACTTTAAGAAAAATC
1 TGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAATAGTGAAACAGGGGAAACTTTAAGAAAAATC
51344691 TGGTATTGATTGGCCAACCTAAAATTTTGGAAATTTTATGGATGGAAGATATACGAGTCTATATT
66 TGGTATTGATTGGCCAACCTAAAATTTTGGAAATTTTATGGATGGAAGATATACGAGTCTATATT
*
51344756 CATGGAAAATTAACGGCAAG
131 CAGGGAAAATTAACGGCAAG
51344776 TGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAATAGTGAAACAGGGGAAACTTTAAGAAAAATC
1 TGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAATAGTGAAACAGGGGAAACTTTAAGAAAAATC
51344841 TGGTATTGATTGGCCAACCTAAAATTTTGGAAATTTTATGGATGGAAGATATACGAGTCTATATT
66 TGGTATTGATTGGCCAACCTAAAATTTTGGAAATTTTATGGATGGAAGATATACGAGTCTATATT
51344906 CAGGGAAAATTAACGGCAAG
131 CAGGGAAAATTAACGGCAAG
51344926 TGATT
1 TGATT
51344931 TGGAGTTTTG
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 154 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (150 bp):
TGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAATAGTGAAACAGGGGAAACTTTAAGAAAAATC
TGGTATTGATTGGCCAACCTAAAATTTTGGAAATTTTATGGATGGAAGATATACGAGTCTATATT
CAGGGAAAATTAACGGCAAG
Found at i:51345383 original size:47 final size:47
Alignment explanation
Indices: 51345329--51345522 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
51345319 TTAGGATTTT
** * * *
51345329 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51345376 ATGTGATGAATGTGAACATGCATATATGTGATACGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51345423 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51345470 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51345517 ATGTGA
1 ATGTGA
51345523 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51345651 original size:98 final size:96
Alignment explanation
Indices: 51345493--51345676 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
51345483 GAACATGCAT
*
51345493 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
51345558 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
51345589 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
51345653 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
51345677 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:51345692 original size:50 final size:48
Alignment explanation
Indices: 51345492--51345676 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
51345482 TGAACATGCA
*
51345492 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
51345540 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
51345588 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
51345638 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
51345677 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:51347103 original size:47 final size:47
Alignment explanation
Indices: 51347034--51347127 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
51347024 ACTATCCATG
*
51347034 GTCTAATTACAACATAAGGACCTTTCATTTAATAAGTCATGGCAATT
1 GTCTAATTACAACATAAGGACCTTTCATTTAACAAGTCATGGCAATT
51347081 GTCTAATTACAACATAAGGACCTTTCATTTAACAAGTCATGGCAATT
1 GTCTAATTACAACATAAGGACCTTTCATTTAACAAGTCATGGCAATT
51347128 AAGCACTTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (47 bp):
GTCTAATTACAACATAAGGACCTTTCATTTAACAAGTCATGGCAATT
Found at i:51350558 original size:50 final size:50
Alignment explanation
Indices: 51350483--51351412 Score: 1618
Period size: 50 Copynumber: 18.6 Consensus size: 50
51350473 GGGATATATG
* *
51350483 AGAGCTAGTATAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
* ** * *
51350533 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCAGCCTCGATATATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CAACGATAGATA
*
51350583 AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350633 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350683 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350733 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350783 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350833 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350883 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350933 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51350983 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51351033 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51351083 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51351133 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51351183 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
51351233 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
* ** * *
51351283 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCAGCCTCGATATATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CAACGATAGATA
* * ****
51351333 AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAGTTTGAT-GAGT-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGA-TA
*
51351382 -GAGCCAGTGTAAGACCATGTCCGGGACATGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGG
51351413 TGTTGGTACC
Statistics
Matches: 847, Mismatches: 28, Indels: 12
0.95 0.03 0.01
Matches are distributed among these distances:
48 29 0.03
49 5 0.01
50 810 0.96
51 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (50 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAACGATAGATA
Found at i:51354701 original size:88 final size:88
Alignment explanation
Indices: 51354552--51354724 Score: 301
Period size: 88 Copynumber: 2.0 Consensus size: 88
51354542 TTGACAAATC
* *
51354552 GTCGGTAATAACCGGCGAGTCCCAAAAAGCTCCGAACTTCAGTAATATTTCTTGGAGGCTTCCAG
1 GTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTTGGAGGCTTCCAG
51354617 TTAAGTATGGCTGAAATTTTGCT
66 TTAAGTATGGCTGAAATTTTGCT
** *
51354640 GTCGGTAATAACCGGCGAGCCCCAGGAAGCTCCGAACTTCGGTAACATTTCTTGGAGGCTTCCAG
1 GTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTTGGAGGCTTCCAG
51354705 TTAAGTATGGCTGAAATTTT
66 TTAAGTATGGCTGAAATTTT
51354725 ACTCGGGTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 80 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (88 bp):
GTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTTGGAGGCTTCCAG
TTAAGTATGGCTGAAATTTTGCT
Found at i:51354972 original size:106 final size:106
Alignment explanation
Indices: 51354787--51354998 Score: 370
Period size: 106 Copynumber: 2.0 Consensus size: 106
51354777 ACCTCTCTTA
*
51354787 ACCAGAACTCACACTTACTGAACTTAGCATATAACTTCTTATCGCGCAAAACTTGCAACACTAAT
1 ACCAGAACTCACACTTACTGAACTTAGCATATAACTTCTTATCCCGCAAAACTTGCAACACTAAT
* *
51354852 CTCAAGTGTTCAGCATGTTCGATCTCATCTCTTGAATAGAC
66 CTCAAGTGCTCAGCATGTTCGATCTCATCTCCTGAATAGAC
*
51354893 ACCAGAACTCACACTTACTGAACTTAGCATATAACTTCTTATCCCGCAAAATTTGCAACACTAAT
1 ACCAGAACTCACACTTACTGAACTTAGCATATAACTTCTTATCCCGCAAAACTTGCAACACTAAT
* *
51354958 CTCAGGTGCTCAGCATGTTCGGTCTCATCTCCTGAATAGAC
66 CTCAAGTGCTCAGCATGTTCGATCTCATCTCCTGAATAGAC
51354999 TAAGATATCA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (106 bp):
ACCAGAACTCACACTTACTGAACTTAGCATATAACTTCTTATCCCGCAAAACTTGCAACACTAAT
CTCAAGTGCTCAGCATGTTCGATCTCATCTCCTGAATAGAC
Found at i:51355577 original size:99 final size:99
Alignment explanation
Indices: 51355446--51355634 Score: 333
Period size: 99 Copynumber: 1.9 Consensus size: 99
51355436 CGGTTGGTGC
51355446 CATACGATACGGAGCTATCGAAATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACCT
1 CATACGATACGGAGCTATCGAAATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACCT
*
51355511 CCCGAACAGGTGGTAAACCCGGTAATATTAGTGT
66 CCCGAACAGGTGGAAAACCCGGTAATATTAGTGT
* * * *
51355545 CATATGATACGGAGCTATCGAAATTGGCGTAGTTCCAGGTACAAGCTCAATACCAAACTCTATCT
1 CATACGATACGGAGCTATCGAAATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACCT
51355610 CCCGAACAGGTGGAAAACCCGGTAA
66 CCCGAACAGGTGGAAAACCCGGTAA
51355635 CTCTTCAGGA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 85 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (99 bp):
CATACGATACGGAGCTATCGAAATCGGCGTAGTCCCAGGTACAAGCTCAATACCAAACTCTACCT
CCCGAACAGGTGGAAAACCCGGTAATATTAGTGT
Found at i:51355967 original size:75 final size:75
Alignment explanation
Indices: 51355883--51356030 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
51355873 GCATCATGCA
* * *
51355883 CGGTCAACCAATCCAACCCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCC
1 CGGTCAACCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAATCCGCC
51355948 GGAAAACATG
66 GGAAAACATG
* *
51355958 CGGTCAACCAATCCAAACCAAGAATAACATCAAATTCGTCAAACGGCAAAAGCATCAAATCGGCC
1 CGGTCAACCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAATCCGCC
51356023 GGAAAACA
66 GGAAAACA
51356031 AGATTCTCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.43, C:0.28, G:0.16, T:0.13
Consensus pattern (75 bp):
CGGTCAACCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAATCCGCC
GGAAAACATG
Found at i:51361807 original size:305 final size:305
Alignment explanation
Indices: 51361256--51361865 Score: 1121
Period size: 305 Copynumber: 2.0 Consensus size: 305
51361246 GCCCAAGTAG
* *
51361256 GGATGCATCACTATAATTGACAAACTCTTTACCGGACTCCGGTTGCACTAGCACTGGAGCTTCGG
1 GGATGCATCACTATAAATGACAAACTCTTTACCGGACTCCGGTTGCACTAGCACTGGAGCTTCGA
*
51361321 TTAAACAGGTCTTTAGTCGATCGAAACTCTTCCGACAGTTTTCTGTCCATTCAAACTCAACATCT
66 TTAAACAGGTCTTTAGTCGATCGAAACTCTTCCGACAGTTTTCTATCCATTCAAACTCAACATCT
51361386 TTTTGGAGTAGTTTTGTCAACGGTGCAGCTATCATCGAGAAACCCCTTACAAACCGTCGGTAGTA
131 TTTTGGAGTAGTTTTGTCAACGGTGCAGCTATCATCGAGAAACCCCTTACAAACCGTCGGTAGTA
51361451 TCCGGCAAGTCCCAAAAAGCTCCTAACTTCAGTAATATTCCTCGGAGGTTTCCAATCGAGTATGG
196 TCCGGCAAGTCCCAAAAAGCTCCTAACTTCAGTAATATTCCTCGGAGGTTTCCAATCGAGTATGG
*
51361516 CCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCGGACACCA
261 CCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCA
* *
51361561 GGATGCATCACTATAAATGACAAACTCTTTGCCGGACTCCGGTTGTACTAGCACTGGAGCTTCGA
1 GGATGCATCACTATAAATGACAAACTCTTTACCGGACTCCGGTTGCACTAGCACTGGAGCTTCGA
* * * *
51361626 TTAAATAGGTCTTTAGTCTATCGAAACTCTTCTGACAGTTTTCTATTCATTCAAACTCAACATCT
66 TTAAACAGGTCTTTAGTCGATCGAAACTCTTCCGACAGTTTTCTATCCATTCAAACTCAACATCT
51361691 TTTTGGAGTAGTTTTGTCAACGGTGCAGCTATCATCGAGAAACCCCTTACAAACCGTCGGTAGTA
131 TTTTGGAGTAGTTTTGTCAACGGTGCAGCTATCATCGAGAAACCCCTTACAAACCGTCGGTAGTA
51361756 TCCGGCAAGTCCCAAAAAGCTCCTAACTTCAGTAATATTCCTCGGAGGTTTCCAATCGAGTATGG
196 TCCGGCAAGTCCCAAAAAGCTCCTAACTTCAGTAATATTCCTCGGAGGTTTCCAATCGAGTATGG
*
51361821 CCGAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCA
261 CCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCA
51361866 CGTGCCCCAA
Statistics
Matches: 294, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
305 294 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (305 bp):
GGATGCATCACTATAAATGACAAACTCTTTACCGGACTCCGGTTGCACTAGCACTGGAGCTTCGA
TTAAACAGGTCTTTAGTCGATCGAAACTCTTCCGACAGTTTTCTATCCATTCAAACTCAACATCT
TTTTGGAGTAGTTTTGTCAACGGTGCAGCTATCATCGAGAAACCCCTTACAAACCGTCGGTAGTA
TCCGGCAAGTCCCAAAAAGCTCCTAACTTCAGTAATATTCCTCGGAGGTTTCCAATCGAGTATGG
CCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCA
Found at i:51362166 original size:206 final size:206
Alignment explanation
Indices: 51361812--51362223 Score: 806
Period size: 206 Copynumber: 2.0 Consensus size: 206
51361802 GGTTTCCAAT
*
51361812 CGAGTATGGCCGAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCACGTGCCCCAAA
1 CGAGTATGGCCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCACGTGCCCCAAA
51361877 AAGCTAACCTCTCTCAACCAAAATTCACATTTACTGAATTTTGCGTATAACTGCTTGTCTCGCAA
66 AAGCTAACCTCTCTCAACCAAAATTCACATTTACTGAATTTTGCGTATAACTGCTTGTCTCGCAA
51361942 AATCTGTAATACTAACCTCAAATGCTCGGCGTGTTCGGCTTCACCTTGTGAATAAACTAAAATAT
131 AATCTGTAATACTAACCTCAAATGCTCGGCGTGTTCGGCTTCACCTTGTGAATAAACTAAAATAT
51362007 CATCAATAAAC
196 CATCAATAAAC
*
51362018 CGAGTATGGCCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCGGACACCACGTGCCCCAAA
1 CGAGTATGGCCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCACGTGCCCCAAA
51362083 AAGCTAACCTCTCTCAACCAAAATTCACATTTACTGAATTTTGCGTATAACTGCTTGTCTCGCAA
66 AAGCTAACCTCTCTCAACCAAAATTCACATTTACTGAATTTTGCGTATAACTGCTTGTCTCGCAA
51362148 AATCTGTAATACTAACCTCAAATGCTCGGCGTGTTCGGCTTCACCTTGTGAATAAACTAAAATAT
131 AATCTGTAATACTAACCTCAAATGCTCGGCGTGTTCGGCTTCACCTTGTGAATAAACTAAAATAT
51362213 CATCAATAAAC
196 CATCAATAAAC
51362224 ACAACCACAA
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
206 204 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (206 bp):
CGAGTATGGCCAAAATTTTGTTCGGATCCACTCTAACACCCGATGCAGACACCACGTGCCCCAAA
AAGCTAACCTCTCTCAACCAAAATTCACATTTACTGAATTTTGCGTATAACTGCTTGTCTCGCAA
AATCTGTAATACTAACCTCAAATGCTCGGCGTGTTCGGCTTCACCTTGTGAATAAACTAAAATAT
CATCAATAAAC
Found at i:51369112 original size:40 final size:40
Alignment explanation
Indices: 51369080--51369387 Score: 465
Period size: 40 Copynumber: 7.7 Consensus size: 40
51369070 CCAGCATGAT
* * * *
51369080 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
51369120 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
51369160 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
51369200 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
51369240 TGCTCTTCGAGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
51369280 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51369320 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
51369360 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
51369388 GTCGAGACCT
Statistics
Matches: 248, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
39 4 0.02
40 244 0.98
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:51369483 original size:38 final size:38
Alignment explanation
Indices: 51369441--51369515 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
51369431 GAATTTTAAT
*
51369441 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
51369479 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
51369516 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Done.