Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 155 of 290
Found at i:52808627 original size:89 final size:89
Alignment explanation
Indices: 52808476--52808649 Score: 330
Period size: 89 Copynumber: 2.0 Consensus size: 89
52808466 GCCAATCTGC
* *
52808476 GTACTAGTCGCTTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTT
1 GTACTAGTCGCTTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTC
52808541 CCTGAAACTAGACTCATATGGCCA
66 CCTGAAACTAGACTCATATGGCCA
52808565 GTACTAGTCGCTTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTC
1 GTACTAGTCGCTTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTC
52808630 CCTGAAACTAGACTCATATG
66 CCTGAAACTAGACTCATATG
52808650 CCCATCTAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (89 bp):
GTACTAGTCGCTTTAAAAATCATATCTTGAGTTTCACAACTCGAAAATCAGTTTCGTGATTTTTC
CCTGAAACTAGACTCATATGGCCA
Found at i:52814128 original size:27 final size:27
Alignment explanation
Indices: 52814094--52814239 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
52814084 TGGATAAGTT
*
52814094 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
52814121 CTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
52814148 GTAGAATTA-TTACAATACCCTTGTAGG
1 GTAGAATTACCGA-AATACCCCTGTAGG
* *
52814175 GTAAAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
52814202 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
52814229 GTAAAATTACC
1 GTAGAATTACC
52814240 ATTTTGCCCC
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:52814936 original size:27 final size:26
Alignment explanation
Indices: 52814892--52814943 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
52814882 CTCGCTGCAA
*
52814892 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
52814919 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
52814944 GCTGCAATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:52815002 original size:65 final size:59
Alignment explanation
Indices: 52814885--52815008 Score: 140
Period size: 65 Copynumber: 2.0 Consensus size: 59
52814875 TGGCAGCCTC
* * * *
52814885 GCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTG
1 GCTGCAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAATATCTG
* *
52814944 GCTGCAATCTGGTGGCTTCGCCACATATATAAATATATGTTCTGGTGGCCTAGCCACAATATCTG
1 GCTGCAATCTGGTGGCCTCGCCAC----AT--ATATATGTTCTGGTGACCTAGCCACAATATCTG
52815009 TATCTGGTGA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
59 23 0.43
63 2 0.04
65 28 0.53
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (59 bp):
GCTGCAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAATATCTG
Found at i:52821116 original size:27 final size:27
Alignment explanation
Indices: 52821078--52821129 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
52821068 GGGTCGGTAA
*
52821078 TATATGATAAAATGACTATTTTGCCTT
1 TATATAATAAAATGACTATTTTGCCTT
*
52821105 TATATAATAAAATTACTATTTTGCC
1 TATATAATAAAATGACTATTTTGCC
52821130 CCTATGTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.44
Consensus pattern (27 bp):
TATATAATAAAATGACTATTTTGCCTT
Found at i:52825356 original size:48 final size:48
Alignment explanation
Indices: 52825205--52825384 Score: 165
Period size: 48 Copynumber: 3.9 Consensus size: 48
52825195 GGCTATGTAC
* *
52825205 GATCCCATGTAAGACCATGTCTAGGACATGGCTTTAG-CATCGATATGT
1 GATCCCATGTAAGACCATATCTAGGACATGGCATT-GCCATCGATATGT
* ** * * * * * *
52825253 AATATCGTGTAAGACCATAGCTAGG-C-T---ATCGGCATCAATGTGT
1 GATCCCATGTAAGACCATATCTAGGACATGGCATTGCCATCGATATGT
* *
52825296 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCGATATGT
1 GATCCCATGTAAGACCATATCTAGGACATGGCATTGCCATCGATATGT
* * *
52825344 GGTCCCATGTAAGACCATATCTAGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATATCTAGGACATGGCATTGCCATC
52825385 CTACCAAGTA
Statistics
Matches: 100, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 28 0.28
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 67 0.67
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTAGGACATGGCATTGCCATCGATATGT
Found at i:52825360 original size:91 final size:90
Alignment explanation
Indices: 52825205--52825377 Score: 240
Period size: 91 Copynumber: 1.9 Consensus size: 90
52825195 GGCTATGTAC
* * *
52825205 GATCCCATGTAAGACCATGTCTAGGACATGGCTTTAGCATCGATATGTAATATCGTGTAAGACCA
1 GATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCATCGATATGTAATACCATGTAAGACCA
*
52825270 TAGCTAGGCTATCGGCATCAATGTGT
66 TAGCTAGGATAT-GGCATCAATGTGT
* ** *
52825296 GATCCCATGTAAGACCATGTCTGGGACATGGCATT-GCCATCGATATGTGGTCCCATGTAAGACC
1 GATCCCATGTAAGACCATGTCTAGGACATGGCATTAG-CATCGATATGTAATACCATGTAAGACC
*
52825360 ATATCTAGGATATGGCAT
65 ATAGCTAGGATATGGCAT
52825378 TGGCATCCTA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
90 6 0.08
91 66 0.92
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (90 bp):
GATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCATCGATATGTAATACCATGTAAGACCA
TAGCTAGGATATGGCATCAATGTGT
Found at i:52850861 original size:21 final size:20
Alignment explanation
Indices: 52850818--52850861 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
52850808 GATTCCCATA
*
52850818 TTGGCCCGTTTTCTCTATTT
1 TTGGCCCGTTTTCGCTATTT
* *
52850838 TTGGCCTGTTTCTCGCTCTTT
1 TTGGCCCGTTT-TCGCTATTT
52850859 TTG
1 TTG
52850862 CCCTCCTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.02, C:0.25, G:0.18, T:0.55
Consensus pattern (20 bp):
TTGGCCCGTTTTCGCTATTT
Found at i:52853303 original size:28 final size:28
Alignment explanation
Indices: 52853233--52853388 Score: 233
Period size: 28 Copynumber: 5.6 Consensus size: 28
52853223 ATCATGAGAT
* * *
52853233 TAGCACTAAGTGTGCGGGTTTAAATTGTA
1 TAGCACTAAGTGTGCGAGTTT-GATTATA
*
52853262 CAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
52853290 TAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
* *
52853318 TAGCACTAAGTGTGCAAGTTTGATTATG
1 TAGCACTAAGTGTGCGAGTTTGATTATA
52853346 TAGCACTAAGTGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
52853373 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
52853389 GACTTAATAT
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.64
29 19 0.16
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:52867769 original size:29 final size:30
Alignment explanation
Indices: 52867736--52867793 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
52867726 TAATTATTTT
* * *
52867736 TAAAATTTAGTTG-CTCTTTTTATAAATAA
1 TAAAAATTAGATGCCTCTTATTATAAATAA
*
52867765 TAAAAATTAGATGCCTCTTATTGTAAATA
1 TAAAAATTAGATGCCTCTTATTATAAATA
52867794 TTTTCAAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (30 bp):
TAAAAATTAGATGCCTCTTATTATAAATAA
Found at i:52871667 original size:37 final size:37
Alignment explanation
Indices: 52871606--52871713 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
52871596 TAGCTCGAAT
* * *
52871606 AATCCCCACACGTAATTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
52871643 AATCTCCACACGTAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
52871680 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
52871714 ATATATTTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:52871912 original size:48 final size:48
Alignment explanation
Indices: 52871854--52871966 Score: 190
Period size: 48 Copynumber: 2.4 Consensus size: 48
52871844 ATATACACAC
* *
52871854 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATAAAT
1 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCAAATATAAAT
* *
52871902 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCAAATATAAAT
52871950 ATCTCATACATATTTCA
1 ATCTCATACATATTTCA
52871967 TGTAACGCCC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGATTTACCAAATATAAAT
Found at i:52873391 original size:93 final size:93
Alignment explanation
Indices: 52873278--52873449 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
52873268 CGCCCATAAG
*
52873278 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
52873342 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
52873371 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
52873436 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
52873450 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:52873444 original size:46 final size:46
Alignment explanation
Indices: 52873271--52873446 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
52873261 TGTAACCCGC
* *
52873271 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
52873317 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
52873367 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
52873410 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
52873447 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:52877309 original size:200 final size:200
Alignment explanation
Indices: 52876966--52877368 Score: 797
Period size: 200 Copynumber: 2.0 Consensus size: 200
52876956 CACTTTTACT
52876966 AAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCTCAAATGCTCAGCATGCTC
1 AAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCTCAAATGCTCAGCATGCTC
52877031 TGTCTCATCTTTTGAATAAATTAAAATATCATCTATAAACACCACAACAAATCTGTCCAAGTATG
66 TGTCTCATCTTTTGAATAAATTAAAATATCATCTATAAACACCACAACAAATCTGTCCAAGTATG
*
52877096 GCCGAAATATGCGATTCATTAAATCCATAAACACAGCTGGAGCATTTGTCAACCCGAATGGCATA
131 GCCGAAATATGCGATTCATTAAATCCATAAACACAGCAGGAGCATTTGTCAACCCGAATGGCATA
52877161 ACTAA
196 ACTAA
52877166 AAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCTCAAATGCTCAGCATGCTC
1 AAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCTCAAATGCTCAGCATGCTC
52877231 TGTCTCATCTTTTGAATAAATTAAAATATCATCTATAAACACCACAACAAATCTGTCCAAGTATG
66 TGTCTCATCTTTTGAATAAATTAAAATATCATCTATAAACACCACAACAAATCTGTCCAAGTATG
52877296 GCCGAAATATGCGATTCATTAAATCCATAAACACAGCAGGAGCATTTGTCAACCCGAATGGCATA
131 GCCGAAATATGCGATTCATTAAATCCATAAACACAGCAGGAGCATTTGTCAACCCGAATGGCATA
52877361 ACTAA
196 ACTAA
52877366 AAA
1 AAA
52877369 TTCATAATGA
Statistics
Matches: 202, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 202 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (200 bp):
AAACTTAGCATACAGCTGCTTATCTCTCAAAGTTTGCAAAACTATCTCAAATGCTCAGCATGCTC
TGTCTCATCTTTTGAATAAATTAAAATATCATCTATAAACACCACAACAAATCTGTCCAAGTATG
GCCGAAATATGCGATTCATTAAATCCATAAACACAGCAGGAGCATTTGTCAACCCGAATGGCATA
ACTAA
Found at i:52881113 original size:45 final size:45
Alignment explanation
Indices: 52881046--52881172 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 45
52881036 TGTAACCCGC
* * *
52881046 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
* *
52881091 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
52881137 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
52881173 ATGCTCAACC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 32 0.43
46 42 0.57
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:52881192 original size:46 final size:45
Alignment explanation
Indices: 52881054--52881192 Score: 122
Period size: 46 Copynumber: 3.0 Consensus size: 45
52881044 GCCCATAAGC
* * * *
52881054 GAACTCGGACTCAACTCAACGAGCTCGG-CGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
* * *** *
52881099 GAACTCGGATTCAACTCAACGAGTTCAGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
52881145 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
52881191 GA
1 GA
52881193 CATGTCACTT
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
45 25 0.31
46 50 0.62
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:52882529 original size:48 final size:48
Alignment explanation
Indices: 52882471--52882645 Score: 305
Period size: 48 Copynumber: 3.6 Consensus size: 48
52882461 ACATTTCATG
52882471 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
1 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
* *
52882519 TTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCATA
1 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
52882567 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
1 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
* * *
52882615 CTAGCCATTCGGCTTTACCACACATATATAT
1 TTAGCCATTCGGCTTTACCACATATACATAT
52882646 TTATCTTGTT
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 120 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
Found at i:52882580 original size:96 final size:96
Alignment explanation
Indices: 52882463--52882645 Score: 339
Period size: 96 Copynumber: 1.9 Consensus size: 96
52882453 GAGATATTAC
* *
52882463 ATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATT
1 ATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
*
52882528 CGGCTTTACCACATATATATATCTCATACAT
66 CGGCTTTACCACACATATATATCTCATACAT
52882559 ATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
1 ATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
52882624 CGGCTTTACCACACATATATAT
66 CGGCTTTACCACACATATATAT
52882646 TTATCTTGTT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 84 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (96 bp):
ATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATT
CGGCTTTACCACACATATATATCTCATACAT
Found at i:52885783 original size:45 final size:45
Alignment explanation
Indices: 52885680--52885947 Score: 347
Period size: 45 Copynumber: 5.9 Consensus size: 45
52885670 TGAATTGCTA
* * * * *
52885680 ATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCATCTCAATTCCG
1 ATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACA-ATCAATGCCG
* * **
52885728 AGGCCATGTCCAACATGGTCTTACACTGGCTCACATTCAATGTTG
1 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCCG
**
52885773 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCTA
1 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCCG
**
52885818 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAACACCG
1 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCCG
* * *
52885863 ATGCCATGTCCAACATGGCCTTACACTGGCTCACAATCAACGACG
1 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCCG
* *
52885908 ATGCCATGTCCAACATAGTCTTACACTGGCTTACAATCAA
1 ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAA
52885948 CCCAAATGTC
Statistics
Matches: 198, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
45 167 0.84
46 20 0.10
47 3 0.02
48 8 0.04
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (45 bp):
ATGCCATGTCCAACATGGTCTTACACTGGCTCACAATCAATGCCG
Found at i:52885880 original size:135 final size:138
Alignment explanation
Indices: 52885675--52885947 Score: 399
Period size: 135 Copynumber: 2.0 Consensus size: 138
52885665 GAGGGTGAAT
* * **
52885675 TGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCATCTCAATTCCGAGGCCATGTCCA
1 TGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAACACCGAGGCCATGTCCA
* * * ** *
52885740 ACATGGTCTTACACTGGCTCACATTCAATGTTGATGCCATGTCCAACATGGTCTTACACTGGCTC
66 ACATGGCCTTACACTGGCTCACAATCAACGACGATGCCATGTCCAACATAGTCTTACACTGGCTC
52885805 ACAATCAA
131 ACAATCAA
* * *
52885813 TGCTAATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACA-ATCAACACCGATGCCATGTCCA
1 TGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAACACCGAGGCCATGTCCA
*
52885875 ACATGGCCTTACACTGGCTCACAATCAACGACGATGCCATGTCCAACATAGTCTTACACTGGCTT
66 ACATGGCCTTACACTGGCTCACAATCAACGACGATGCCATGTCCAACATAGTCTTACACTGGCTC
52885940 ACAATCAA
131 ACAATCAA
52885948 CCCAAATGTC
Statistics
Matches: 121, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
135 84 0.69
136 20 0.17
137 3 0.02
138 14 0.12
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (138 bp):
TGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAACACCGAGGCCATGTCCA
ACATGGCCTTACACTGGCTCACAATCAACGACGATGCCATGTCCAACATAGTCTTACACTGGCTC
ACAATCAA
Found at i:52890838 original size:20 final size:20
Alignment explanation
Indices: 52890775--52890839 Score: 51
Period size: 20 Copynumber: 3.0 Consensus size: 20
52890765 ATGAACTCAA
52890775 ACCACAACTCATGAGTTCAG
1 ACCACAACTCATGAGTTCAG
* **
52890795 ATGTCACATTTA-TCATGAACTCAG
1 A--CCACA---ACTCATGAGTTCAG
52890819 ACCACAACTCATGAGTTCAG
1 ACCACAACTCATGAGTTCAG
52890839 A
1 A
52890840 TCACGTATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
19 1 0.03
20 12 0.36
22 8 0.24
24 11 0.33
25 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (20 bp):
ACCACAACTCATGAGTTCAG
Found at i:52893404 original size:46 final size:46
Alignment explanation
Indices: 52893337--52893740 Score: 636
Period size: 46 Copynumber: 8.8 Consensus size: 46
52893327 TGTAACCCGC
* * * * *
52893337 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
* * *
52893383 CCATAAGTGAACTCGGACTCAACTTAACGAGCTC-GA-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGC-A--T
* * *
52893429 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893568 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
52893706 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCA
52893741 CATTTCATAA
Statistics
Matches: 335, Mismatches: 14, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
43 1 0.00
44 3 0.01
45 3 0.01
46 292 0.87
47 27 0.08
48 4 0.01
49 4 0.01
50 1 0.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:52901024 original size:46 final size:45
Alignment explanation
Indices: 52900965--52901131 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 45
52900955 GCCCATAGGC
*
52900965 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATCCATAAGT
* * * * *
52901011 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACATTTCA-C
1 GAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTATCCA--TAAGT
* * * *
52901058 GAACTCGGACTAAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATCCATAAGT
* *
52901104 GAACTCAGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
52901132 ATGCTCAACC
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.03
46 58 0.60
47 32 0.33
48 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTATCCATAAGT
Found at i:52901098 original size:93 final size:93
Alignment explanation
Indices: 52900964--52901135 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
52900954 CGCCCATAGG
* * * * *
52900964 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
52901029 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
52901057 CGAACTCGGACTAAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGAACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
52901122 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
52901136 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTAAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:52901151 original size:46 final size:45
Alignment explanation
Indices: 52901058--52901143 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
52901048 TACATTTCAC
* * *
52901058 GAACTCGGACTAAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTAAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* *
52901104 GAACTCAGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCAGACTAAACTCAACGAGTTCGGAATGCGCAACCAT
52901144 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (45 bp):
GAACTCAGACTAAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:52903761 original size:29 final size:28
Alignment explanation
Indices: 52903725--52903802 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
52903715 TCATGAGATT
52903725 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
52903755 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
52903782 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
52903803 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:52904020 original size:174 final size:174
Alignment explanation
Indices: 52903755--52904082 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
52903745 AAATTGTACA
52903755 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
52903820 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
52903885 TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
* *
52903929 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
52903994 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
52904059 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
52904083 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
Found at i:52908990 original size:27 final size:27
Alignment explanation
Indices: 52908960--52909202 Score: 315
Period size: 27 Copynumber: 9.0 Consensus size: 27
52908950 ATTACCCCTA
* *
52908960 GTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCTTG
* *
52908987 GTTTATAAAATCACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCTTG
* *
52909014 GTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCTTG
*
52909041 GTTTATAAAATCACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCTTG
* *
52909068 GTTTACAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCTTG
* * * *
52909095 CTTTGTAAAATTACTAGAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCTTG
*
52909122 GTTTATAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCTTG
* *
52909149 ATTTATAAAATTACCAAAATACCCCTG
1 GTTTATAAAATTACCAAAATACCCTTG
* * *
52909176 ATTTGTGAAATTACCAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCTTG
52909203 TAGGGTAGAA
Statistics
Matches: 187, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCTTG
Found at i:52909087 original size:81 final size:81
Alignment explanation
Indices: 52908960--52909202 Score: 378
Period size: 81 Copynumber: 3.0 Consensus size: 81
52908950 ATTACCCCTA
* * * *
52908960 GTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAAT
1 GTTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAAT
52909025 TACTAAAATACCCTTG
66 TACTAAAATACCCTTG
* * *
52909041 GTTTATAAAATCACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGCTTTGTAAAAT
1 GTTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAAT
*
52909106 TACTAGAATACCCTTG
66 TACTAAAATACCCTTG
* * *
52909122 GTTTATAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCTGATTTGTGAAAT
1 GTTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAAT
*
52909187 TACCAAAATACCCTTG
66 TACTAAAATACCCTTG
52909203 TAGGGTAGAA
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 147 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (81 bp):
GTTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAAT
TACTAAAATACCCTTG
Found at i:52909214 original size:27 final size:27
Alignment explanation
Indices: 52909130--52909380 Score: 292
Period size: 27 Copynumber: 9.3 Consensus size: 27
52909120 TGGTTTATAA
*** *
52909130 AATTACCAAAATACCCCTG-ATTTATAA
1 AATTACCAAAATACCCCTGTA-GGGTAG
**
52909157 AATTACCAAAATACCCCTG-ATTTGT-G
1 AATTACCAAAATACCCCTGTA-GGGTAG
*
52909183 AAATTACCAAAATACCCTTGTAGGGTAG
1 -AATTACCAAAATACCCCTGTAGGGTAG
*
52909211 AATTACCAAAATACCCCTGTAGAGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
52909238 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
52909265 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
52909292 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
52909319 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
52909346 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
52909373 AATTACCA
1 AATTACCA
52909381 TTTTACCCCT
Statistics
Matches: 200, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
27 198 0.99
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:52909215 original size:54 final size:53
Alignment explanation
Indices: 52908952--52909380 Score: 287
Period size: 54 Copynumber: 7.9 Consensus size: 53
52908942 TGTTACACAT
* * *** *
52908952 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGT-TTATAAAATCACCAAAA
1 TACCCCT-GTTTGTGAAATTACCAAAATACCCTT-GTAGGGTAAAATTACCAAAA
* * *** *
52909006 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGT-TTATAAAATCACCAAAA
1 TACCCCT-GTTTGTGAAATTACCAAAATACCCTT-GTAGGGTAAAATTACCAAAA
* *** * ** * *
52909060 TACCCTTGGTTTACAAAATTACCAAAATACCCCTGCT-TTGTAAAATTACTAGAA
1 TACCCCT-GTTTGTGAAATTACCAAAATACCCTTG-TAGGGTAAAATTACCAAAA
* * * * ***
52909114 TACCCTTGGTTTATAAAATTACCAAAATACCCCTG-ATTTATAAAATTACCAAAA
1 TACCCCT-GTTTGTGAAATTACCAAAATACCCTTGTA-GGGTAAAATTACCAAAA
*
52909168 TACCCCTGATTTGTGAAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAA
1 TACCCCTG-TTTGTGAAATTACCAAAATACCCTTGTAGGGTAAAATTACCAAAA
* * * * * * *
52909222 TACCCCTG-TAGAGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAA
1 TACCCCTGTTTGTG-A-AATTACCAAAATACCCTTGTAGGGTAAAATTACCAAAA
* * * *
52909276 TACCCCTG-TAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAA
1 TACCCCTGTTTGTG-A-AATTACCAAAATACCCTTGTAGGGTAAAATTACCAAAA
* * *
52909330 TACCCCTGTATG-GTAGAATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 TACCCCTGTTTGTG-A-AATTACCAAAATACCCTTGTAGGGTAAAATTACCA
52909381 TTTTACCCCT
Statistics
Matches: 331, Mismatches: 36, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
52 3 0.01
53 3 0.01
54 323 0.98
55 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (53 bp):
TACCCCTGTTTGTGAAATTACCAAAATACCCTTGTAGGGTAAAATTACCAAAA
Found at i:52909215 original size:81 final size:79
Alignment explanation
Indices: 52908964--52909380 Score: 356
Period size: 81 Copynumber: 5.2 Consensus size: 79
52908954 CCCCTAGTTT
* * * *
52908964 GTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACT
1 GTAAAATTACCAAAATACCCTT-GTTTATAAAATTACCAAAATACCCCT-GTTTGTGAAATTACC
**
52909029 AAAATACCCTTGGT-TT
64 AAAATACCCTT-GTAGG
* * * * *
52909045 ATAAAATCACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGCTTTGTAAAATTACT
1 GTAAAATTACCAAAATACCCTT-GTTTATAAAATTACCAAAATACCCCTG-TTTGTGAAATTACC
* **
52909110 AGAATACCCTTGGT-TT
64 AAAATACCCTT-GTAGG
* *
52909126 ATAAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTACC
1 GTAAAATTACCAAAATACCCTTG-TTTATAAAATTACCAAAATACCCCTG-TTTGTGAAATTACC
52909191 AAAATACCCTTGTAGG
64 AAAATACCCTTGTAGG
* * ** * * * * *
52909207 GTAGAATTACCAAAATACCCCTGTAGAGTAGAATTACCGAAATACCCCTG-TAGGGTAGAATTAT
1 GTAAAATTACCAAAATACCCTTGTTTA-TAAAATTACCAAAATACCCCTGTTTGTG-A-AATTAC
* *
52909271 CGAAATACCCCTGTAGG
63 CAAAATACCCTTGTAGG
* * *** * *
52909288 GTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTATG-GTAGAATTAC
1 GTAAAATTACCAAAATACCCTTGT-TTATAAAATTACCAAAATACCCCTGTTTGTG-A-AATTAC
* *
52909352 CGAGATACCCTTGTAGG
63 CAAAATACCCTTGTAGG
52909369 GTAAAATTACCA
1 GTAAAATTACCA
52909381 TTTTACCCCT
Statistics
Matches: 290, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.01
80 7 0.02
81 278 0.96
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.28
Consensus pattern (79 bp):
GTAAAATTACCAAAATACCCTTGTTTATAAAATTACCAAAATACCCCTGTTTGTGAAATTACCAA
AATACCCTTGTAGG
Found at i:52909390 original size:54 final size:53
Alignment explanation
Indices: 52909157--52909380 Score: 324
Period size: 54 Copynumber: 4.2 Consensus size: 53
52909147 TGATTTATAA
** *
52909157 AATTACCAAAATACCCCTGATTTGT-GAAATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTG-TAGGTAG-AATTACCGAAATACCCTTGTAGGGTAG
*
52909211 AATTACCAAAATACCCCTGTAGAGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAG-GTAGAATTACCGAAATACCCTTGTAGGGTAG
* *
52909265 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTA-GGTAGAATTACCGAAATACCCTTGTAGGGTAG
* *
52909319 AATTACCAAAATACCCCTGTATGGTAGAATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCAAAATACCCCTGTA-GGTAGAATTACCGAAATACCCTTGTAGGGTAG
52909373 AATTACCA
1 AATTACCA
52909381 TTTTACCCCT
Statistics
Matches: 155, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
53 1 0.01
54 152 0.98
55 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (53 bp):
AATTACCAAAATACCCCTGTAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:52909760 original size:22 final size:22
Alignment explanation
Indices: 52909726--52909785 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
52909716 ACACGTTATC
52909726 GATGGC-TCTGTGCCAACCTAAA
1 GATGGCTTC-GTGCCAACCTAAA
* * * * *
52909748 TATGGCTTCGTGCCATCTTGAC
1 GATGGCTTCGTGCCAACCTAAA
52909770 GATGGCTTCGTGCCAA
1 GATGGCTTCGTGCCAA
52909786 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (22 bp):
GATGGCTTCGTGCCAACCTAAA
Found at i:52909973 original size:27 final size:27
Alignment explanation
Indices: 52909943--52910007 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
52909933 ATTCTGTTAA
* * *
52909943 GTGGCTTTGCCA-TATTATCTGATTCTG
1 GTGGCTTTGCCACAAATATCTG-TACTG
*
52909970 GTGGCTATGCCACAAATATCTGTACTG
1 GTGGCTTTGCCACAAATATCTGTACTG
*
52909997 GAGGCTTTGCC
1 GTGGCTTTGCC
52910008 TCAACTTACT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (27 bp):
GTGGCTTTGCCACAAATATCTGTACTG
Found at i:52910183 original size:6 final size:6
Alignment explanation
Indices: 52910168--52910297 Score: 88
Period size: 6 Copynumber: 20.8 Consensus size: 6
52910158 ATTCTGTTAC
* * *
52910168 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
52910217 CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATATT CTG-TCAC
1 CTGATT CTGATT CTGAT--T CTGATT CTGATT CTG--ATT CTGAT--T
*
52910263 CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
52910298 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 13, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
5 5 0.05
6 76 0.78
7 8 0.08
8 9 0.09
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:52910196 original size:31 final size:31
Alignment explanation
Indices: 52910158--52910313 Score: 151
Period size: 31 Copynumber: 5.0 Consensus size: 31
52910148 CTGATTTTTT
*
52910158 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
52910189 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
52910220 ATTCTGATT--CTG-TCACCTAATTCTGATTCTG
1 ATTCTG-TTACCTGAT-A-CTGATTCTGATTCTG
* * *
52910251 ATATTCTGTCACCTAATTCTGATTCTGATTCTG
1 --ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
52910284 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
52910314 TAATGGGTTA
Statistics
Matches: 104, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
29 1 0.01
30 20 0.19
31 55 0.53
32 5 0.05
33 20 0.19
34 2 0.02
35 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:52910209 original size:37 final size:37
Alignment explanation
Indices: 52910168--52910252 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
52910158 ATTCTGTTAC
* * * *
52910168 CTGATACTGATTCTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
*
52910205 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
52910242 CTGATTCTGAT
1 CTGATTCTGAT
52910253 ATTCTGTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATA
Found at i:52910264 original size:27 final size:27
Alignment explanation
Indices: 52910214--52910279 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
52910204 ACTGATTCTG
52910214 ATTCTGATTCTG--ATTCTGTCACCTA
1 ATTCTGATTCTGATATTCTGTCACCTA
52910239 ATTCTGATTCTGATATTCTGTCACCTA
1 ATTCTGATTCTGATATTCTGTCACCTA
52910266 ATTCTGATTCTGAT
1 ATTCTGATTCTGAT
52910280 TCTGATTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 12 0.31
27 27 0.69
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (27 bp):
ATTCTGATTCTGATATTCTGTCACCTA
Found at i:52916190 original size:28 final size:28
Alignment explanation
Indices: 52916154--52916262 Score: 157
Period size: 28 Copynumber: 3.9 Consensus size: 28
52916144 CTGCCAGAAT
* * *
52916154 AGAT-ATTGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
*
52916181 AGATAATTGTGGCAGGGCCACCAGAAAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
*
52916209 AGATATTTGTGGCAGAGCCACCAGAAAC
1 AGATAATTGTGGCAGAGCCACCAGAAAC
*
52916237 AGATATTTGTGGCAGAGCCACCAGAA
1 AGATAATTGTGGCAGAGCCACCAGAA
52916263 CACTTCCTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
27 4 0.05
28 71 0.95
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (28 bp):
AGATAATTGTGGCAGAGCCACCAGAAAC
Found at i:52916424 original size:26 final size:26
Alignment explanation
Indices: 52916370--52916427 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
52916360 TCAACCCTAG
* *
52916370 GGGTATAATGGTCATTTTGCACCTAA
1 GGGTATAATGGTAATTTTGCAACTAA
*
52916396 GGGTATAATGGTAATTTT-CATACTTA
1 GGGTATAATGGTAATTTTGCA-ACTAA
52916422 GGGTAT
1 GGGTAT
52916428 TTTAGAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (26 bp):
GGGTATAATGGTAATTTTGCAACTAA
Found at i:52925636 original size:33 final size:34
Alignment explanation
Indices: 52925557--52925639 Score: 98
Period size: 32 Copynumber: 2.5 Consensus size: 34
52925547 CCTATGGGCC
52925557 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGT
1 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGT
* * * **
52925591 CTAATGTAATCTGAA-AA-GGGCTCTGGCCCAGT
1 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGT
52925623 ATCACTGTTATCTGAAT
1 AT-ACTGTTATCTGAAT
52925640 GGGCTTAGGC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 14 0.36
33 13 0.33
34 12 0.31
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (34 bp):
ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGT
Found at i:52925644 original size:32 final size:30
Alignment explanation
Indices: 52925557--52925652 Score: 75
Period size: 32 Copynumber: 2.9 Consensus size: 30
52925547 CCTATGGGCC
*
52925557 ATACTGTTATCTGAATAAGGGGCTAAGGCCCAGT
1 ATACTGTTATCTGAAT---GGGCT-TGGCCCAGT
* * * *
52925591 CTAATGTAATCTGAAAAGGGCTCTGGCCCAGT
1 ATACTGTTATCTG-AATGGGCT-TGGCCCAGT
52925623 ATCACTGTTATCTGAATGGGCTTAGGCCCA
1 AT-ACTGTTATCTGAATGGGCTT-GGCCCA
52925653 ATGGGCTTGA
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
31 1 0.02
32 27 0.55
33 9 0.18
34 10 0.20
35 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (30 bp):
ATACTGTTATCTGAATGGGCTTGGCCCAGT
Found at i:52930922 original size:33 final size:34
Alignment explanation
Indices: 52930849--52930925 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 34
52930839 GGCCATACTA
*
52930849 TTATCTGAATAAGGGGCTAAGGCCCAGTCTAATG
1 TTATCTGAATAAGGGGCTAAGGCCCAGTATAATG
* ** *
52930883 TAATCTGAA-AA-GGGCTCTGGCCCAGTATCACTG
1 TTATCTGAATAAGGGGCTAAGGCCCAGTAT-AATG
52930916 TTATCTGAAT
1 TTATCTGAAT
52930926 GGGCTTAGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
32 14 0.40
33 13 0.37
34 8 0.23
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (34 bp):
TTATCTGAATAAGGGGCTAAGGCCCAGTATAATG
Found at i:52932136 original size:28 final size:28
Alignment explanation
Indices: 52932064--52932180 Score: 139
Period size: 28 Copynumber: 4.2 Consensus size: 28
52932054 CAGCATGGCT
* * *
52932064 ACCAG-AACAGATA-TTATGACAGAGTC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
* * * * *
52932090 ACCAGATACAGGTAATTGTGGCAGGGCT
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
52932118 ACCATAAACAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
52932146 ACCAGAAACAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
52932174 ACCAGAA
1 ACCAGAA
52932181 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
26 5 0.07
27 6 0.08
28 64 0.85
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCAGAGCC
Found at i:52938241 original size:49 final size:48
Alignment explanation
Indices: 52938169--52938354 Score: 246
Period size: 49 Copynumber: 3.8 Consensus size: 48
52938159 TGAGGTCACG
* *
52938169 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTGGTCGCA
** * * *
52938218 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GT-TGGTCGCA
*
52938268 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTGGTCGCA
* *
52938317 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
52938355 AGCTTCGGCT
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 75 0.64
50 41 0.35
51 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTGGTCGCA
Found at i:52938329 original size:99 final size:99
Alignment explanation
Indices: 52938158--52938342 Score: 327
Period size: 99 Copynumber: 1.9 Consensus size: 99
52938148 ATGAACTATT
* *
52938158 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGT
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGT
52938223 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
66 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
*
52938257 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACT-GTTGGTCGCATGTG
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGA-TAATTGGTCGCATGTG
52938321 TAGTACTAAGTGCAGGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
52938343 TGCGTACCAG
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 81 0.99
100 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (99 bp):
GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:52943303 original size:35 final size:33
Alignment explanation
Indices: 52943189--52943304 Score: 79
Period size: 35 Copynumber: 3.2 Consensus size: 33
52943179 CCAAAATCCT
* **
52943189 TATTATAATTATTGTAATTATAATTTAGGATCGAA
1 TATTATAATTA-TGTAATTATAATTTTGG-TAAAA
* *
52943224 TATTATAATTACTGTAATTCTAATTTTTTTTGTCAAACA
1 TATTATAATTA-TGTAATTATAA---TTTTGGT-AAA-A
*
52943263 TTATTATAATTATGGTAATTATAATATTTGGTTAAA
1 -TATTATAATTAT-GTAATTATAAT-TTTGGTAAAA
52943299 TATTAT
1 TATTAT
52943305 GATTTGATTC
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
35 27 0.42
36 1 0.02
37 4 0.06
38 10 0.16
39 2 0.03
40 20 0.31
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (33 bp):
TATTATAATTATGTAATTATAATTTTGGTAAAA
Found at i:52945439 original size:39 final size:40
Alignment explanation
Indices: 52945322--52945451 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
52945312 GCTCCTCGTT
*
52945322 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
52945362 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
52945402 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
52945441 CAAATGCCTTC
1 CAAATGCCTTC
52945452 TGATCTTAGT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
39 34 0.41
40 46 0.56
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:52949251 original size:17 final size:17
Alignment explanation
Indices: 52949211--52949257 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
52949201 GGTCAAACAT
*
52949211 TATTATAATTGTGGTAAT
1 TATTATAATT-TGGTAAC
52949229 TATTAT-ATTTGGTTAAC
1 TATTATAATTTGG-TAAC
*
52949246 TATTATGATTTG
1 TATTATAATTTG
52949258 ATTCATATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 3 0.12
17 12 0.46
18 11 0.42
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.53
Consensus pattern (17 bp):
TATTATAATTTGGTAAC
Found at i:52957018 original size:531 final size:531
Alignment explanation
Indices: 52956152--52957740 Score: 3021
Period size: 531 Copynumber: 3.0 Consensus size: 531
52956142 TTGCCATCCC
* * *
52956152 AGGTCAATGTACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAGATT
1 AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
52956217 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAAT--AGGGAGGGTGGAAGGAA
66 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
* **
52956280 CTCCAGTTCCATTGCTATGACCAGGCTAATAAATGAAAGGAGATGT--T-GTTGTGAGGGAAATG
131 CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
52956342 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
196 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
52956407 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
261 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
52956472 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
326 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
52956537 AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
391 AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
52956602 AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
456 AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
52956667 ATTATTATTCA
521 ATTATTATTCA
52956678 AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
1 AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
52956743 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
66 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
52956808 CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
131 CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
52956873 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
196 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
52956938 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
261 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
52957003 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
326 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
52957068 AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
391 AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
52957133 AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
456 AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
52957198 ATTATTATTCA
521 ATTATTATTCA
52957209 AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
1 AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
52957274 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
66 TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
52957339 CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
131 CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
52957404 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
196 GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
52957469 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
261 GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
*
52957534 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAATTTCAGAACTAACAGTCAGCTA
326 ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
* * *
52957599 AAGAGAATATAAAAGTA-GGAAACCAATATGCTTCAGATTTAAACGTGTAGATAAAATATCTCAT
391 AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
*
52957663 AAACTTAAAAATTTCAGCTTGATCAAAA-AAAAATTATTTACAACTATTTCCTTCAGTCAAATTC
456 AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
*
52957727 ATTATTATTTA
521 ATTATTATTCA
52957738 AGG
1 AGG
52957741 ATGCATTTGG
Statistics
Matches: 1046, Mismatches: 12, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
526 108 0.10
528 60 0.06
529 48 0.05
530 73 0.07
531 757 0.72
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (531 bp):
AGGTCAACGCACCTGTTTTACTGTGACAGAAATACAAGAGCAATGCTTATGCAGCTGTTCAAATT
TGGTTACATACATTGCATGAGCTATGACCACAGAGAAAAGAGAAATAGAGGGAGGGTGGAAGGAA
CTCCAGTTCCATTGCTACGACTGGGCTAATAAATGAAAGGAGATGTGGTGGTTGTGAGGGAAATG
GTGAAAAAGAAAGGGGGGGAGAATAGGGGGCATTGATCAGGACTCTTGTTTCCATTTCAACTTGA
GTTTCAGAAAGGAACACATATTTGGGCCCAAATTTCATTCTAATTAACTAATTTAATAAAAGTTT
ATGTCTTAGACCAGCCCAGCTCTGAATTGTCTTTTGCTCAAAGTTTCAGAACTAACAGTCAGCTA
AAGAGAATATAAAAGTATTGAAACCAATATGCTTTAGATTTAAAGGTGTAGATAAAATATCTCAT
AAACTTAAAAATTTCAGCTTGATCAAAACAAAAATTATTCACAACTATTTCCTTCAGTCAAATTC
ATTATTATTCA
Found at i:52959632 original size:270 final size:270
Alignment explanation
Indices: 52959151--52959665 Score: 888
Period size: 270 Copynumber: 1.9 Consensus size: 270
52959141 AGCTAATATA
* *
52959151 TGCTTCCAAAAACGTTGTCAAGCATGATTTATAGATACATCCTCCCAGCATAAAAATGCTCTAAT
1 TGCTTCCAAAAACGTTGTCAAGCATGATTTACAGATACATCCTCCAAGCATAAAAATGCTCTAAT
* * * *
52959216 ACATTAACAAAAAAAAACTTCAGTAACTGGAAAAATTTAGCATGCTCGTTGTGTTCTACTTGTTT
66 ACATTAACAAAAAAAAACTTCACTAACTGGAAAAATTTAGCATGCTCGTCGTGTTCTACCTGTCT
52959281 AAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCATAAAACTGCCTTAA
131 AAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCATAAAACTGCCTTAA
* *
52959346 ACATGCTAAGAGAAACAAATGCATGCAACCAAGGATTACAAGCAGAGTTGCTTCCAAATACATAA
196 ACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGCTTCCAAATACATAA
52959411 ATAAATGAAC
261 ATAAATGAAC
* *
52959421 TGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCATAATAATGCTCTAAT
1 TGCTTCCAAAAACGTTGTCAAGCATGATTTACAGATACATCCTCCAAGCATAAAAATGCTCTAAT
* *
52959486 ACATTAACAAAAACAAACTTCACTAACTGG-AAAATTTAGCATGCTGGTCGTGTTCTACCTGTCT
66 ACATTAACAAAAAAAAACTTCACTAACTGGAAAAATTTAGCATGCTCGTCGTGTTCTACCTGTCT
* *
52959550 AAAATCCAATTCTTGAAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCATACAACTGCCTTA
131 AAAATCCAATTCTCG-AAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCATAAAACTGCCTTA
52959615 AACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
195 AACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
52959666 TCAAGGGCAC
Statistics
Matches: 230, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
269 44 0.19
270 186 0.81
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (270 bp):
TGCTTCCAAAAACGTTGTCAAGCATGATTTACAGATACATCCTCCAAGCATAAAAATGCTCTAAT
ACATTAACAAAAAAAAACTTCACTAACTGGAAAAATTTAGCATGCTCGTCGTGTTCTACCTGTCT
AAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCATAAAACTGCCTTAA
ACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGCTTCCAAATACATAA
ATAAATGAAC
Found at i:52964109 original size:22 final size:22
Alignment explanation
Indices: 52964057--52964110 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
52964047 AATAACTCTA
*
52964057 CATAAGTCAACTAAAAAACCTT
1 CATAAGTCGACTAAAAAACCTT
52964079 CATAAGTCGACTAAAAAACCTT
1 CATAAGTCGACTAAAAAACCTT
52964101 CATAAGTCGA
1 CATAAGTCGA
52964111 GCAACATATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.22
Consensus pattern (22 bp):
CATAAGTCGACTAAAAAACCTT
Found at i:52973407 original size:16 final size:18
Alignment explanation
Indices: 52973383--52973415 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
52973373 AAAATAATCC
52973383 AAGATAAAAAAA-AATTA
1 AAGATAAAAAAACAATTA
52973400 AAGA-AAAAAAACAATT
1 AAGATAAAAAAACAATT
52973416 TACCTCAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (18 bp):
AAGATAAAAAAACAATTA
Found at i:52974808 original size:15 final size:16
Alignment explanation
Indices: 52974788--52974827 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
52974778 TAGTTAGATC
52974788 AAATAAATCA-TTAAA
1 AAATAAATCATTTAAA
52974803 AAATAAAAT-ATTTAAA
1 AAAT-AAATCATTTAAA
52974819 AAATAAATC
1 AAATAAATC
52974828 TCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (16 bp):
AAATAAATCATTTAAA
Found at i:52977062 original size:38 final size:38
Alignment explanation
Indices: 52977008--52977182 Score: 206
Period size: 38 Copynumber: 4.6 Consensus size: 38
52976998 TACTACACTA
* * * **
52977008 GCACAAAGCCTGCTAGGCACTATGCCTGATTAACATTG
1 GCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCG
*
52977046 GCACAAAGTCTACTAGGCACTAAGCCTGAATAACACCG
1 GCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCG
* * *
52977084 GCACTAAGCCTACTAGGCACTAAGCCTAAATAATACCG
1 GCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCG
** * * *
52977122 GCATTAAGCCTGCTAGGCACTAAGCCTAAATAACACCA
1 GCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCG
* *
52977160 GCACTAAGCCTGCTAGGCACTAA
1 GCACAAAGCCTACTAGGCACTAA
52977183 ACTTGAATCA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 122 1.00
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (38 bp):
GCACAAAGCCTACTAGGCACTAAGCCTGAATAACACCG
Found at i:52977089 original size:22 final size:21
Alignment explanation
Indices: 52977061--52977171 Score: 71
Period size: 22 Copynumber: 5.6 Consensus size: 21
52977051 AAGTCTACTA
52977061 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAA-ACC
*
52977083 GGCACTAAGCCT-ACT--A--
1 GGCACTAAGCCTGAATAAACC
*
52977099 GGCACTAAGCCTAAATAATACC
1 GGCACTAAGCCTGAATAA-ACC
* *
52977121 GGCATTAAGCCTG-CT--A--
1 GGCACTAAGCCTGAATAAACC
*
52977137 GGCACTAAGCCTAAATAACACC
1 GGCACTAAGCCTGAATAA-ACC
*
52977159 AGCACTAAGCCTG
1 GGCACTAAGCCTG
52977172 CTAGGCACTA
Statistics
Matches: 67, Mismatches: 10, Indels: 24
0.66 0.10 0.24
Matches are distributed among these distances:
16 23 0.34
17 3 0.04
18 2 0.03
20 2 0.03
21 3 0.04
22 34 0.51
ACGTcount: A:0.35, C:0.30, G:0.18, T:0.17
Consensus pattern (21 bp):
GGCACTAAGCCTGAATAAACC
Found at i:52977349 original size:60 final size:60
Alignment explanation
Indices: 52977276--52977403 Score: 238
Period size: 60 Copynumber: 2.1 Consensus size: 60
52977266 ATCACTTGTA
52977276 AGGAAAATGAAATGAAATAAATTATAACATTCTTATATAAAAATAAAAACAAACTTACTT
1 AGGAAAATGAAATGAAATAAATTATAACATTCTTATATAAAAATAAAAACAAACTTACTT
*
52977336 AGGAAAATGAAATGAAATAAATTATAACATTCTTATATAAAAATAAACACAAACTTACTT
1 AGGAAAATGAAATGAAATAAATTATAACATTCTTATATAAAAATAAAAACAAACTTACTT
*
52977396 AGGCAAAT
1 AGGAAAAT
52977404 TTGTAATAGT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.27
Consensus pattern (60 bp):
AGGAAAATGAAATGAAATAAATTATAACATTCTTATATAAAAATAAAAACAAACTTACTT
Found at i:52981229 original size:108 final size:108
Alignment explanation
Indices: 52981094--52981314 Score: 352
Period size: 108 Copynumber: 2.0 Consensus size: 108
52981084 ACACGGTCGA
* * * *
52981094 AGACATGCCCGTGTGCCATGGTCGTGGGAAAACTGATGAGGTTACTGACTTGGGTCACACGGACA
1 AGACATGCCCATGTGCCATGGCCGTGGGAAAACTGAGGAGGTTACTGACTTGGGTCACAAGGACA
52981159 ACCGCACACCCATGTGCCAGCCCGTGTGCCACACACGACCAGT
66 ACCGCACACCCATGTGCCAGCCCGTGTGCCACACACGACCAGT
* * * *
52981202 AGACATGCCTATGTGCCATGGCCGTGGGAAAACTGGGGAGGTTACTGACTTGGGTCACAAGGCCG
1 AGACATGCCCATGTGCCATGGCCGTGGGAAAACTGAGGAGGTTACTGACTTGGGTCACAAGGACA
* *
52981267 ACCGCACACCCATGTGCCAGCCCGTGTGCTACACACGGCCAGT
66 ACCGCACACCCATGTGCCAGCCCGTGTGCCACACACGACCAGT
52981310 AGACA
1 AGACA
52981315 CACCCGTGTG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (108 bp):
AGACATGCCCATGTGCCATGGCCGTGGGAAAACTGAGGAGGTTACTGACTTGGGTCACAAGGACA
ACCGCACACCCATGTGCCAGCCCGTGTGCCACACACGACCAGT
Found at i:52982487 original size:43 final size:42
Alignment explanation
Indices: 52982422--52982550 Score: 134
Period size: 42 Copynumber: 3.0 Consensus size: 42
52982412 AGCTCGTACA
* * *
52982422 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * *
52982464 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATC-GATAGCG
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
52982506 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCATATCTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAATCACATATCG
52982549 AT
1 AT
52982551 AACCTAATGT
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
42 40 0.58
43 29 0.42
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:52985022 original size:16 final size:16
Alignment explanation
Indices: 52985001--52985032 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
52984991 GCTTGGTAAG
52985001 TTTAATTCTTATTATA
1 TTTAATTCTTATTATA
52985017 TTTAATTCTTATTATA
1 TTTAATTCTTATTATA
52985033 CGAACTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAATTCTTATTATA
Found at i:52985450 original size:20 final size:23
Alignment explanation
Indices: 52985401--52985451 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
52985391 TATCATGTAA
*
52985401 AATGTTAGAATTGGCTTGGTTAT
1 AATGTTTGAATTGGCTTGGTTAT
52985424 AATGTTTGAATTGG-TTGG-TAT
1 AATGTTTGAATTGGCTTGGTTAT
52985445 -ATGTTTG
1 AATGTTTG
52985452 CAAGTATTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.26
21 3 0.11
22 4 0.15
23 13 0.48
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (23 bp):
AATGTTTGAATTGGCTTGGTTAT
Found at i:52990551 original size:29 final size:30
Alignment explanation
Indices: 52990498--52990556 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
52990488 TATGGTTTAA
* * *
52990498 TGTGCAGTTGTATACATGAACTTTT-ATTT
1 TGTGCAATTGTATACATAAAATTTTGATTT
*
52990527 TGTGCAATTTTATACATAAAATTTTGATTT
1 TGTGCAATTGTATACATAAAATTTTGATTT
52990557 GATTCGATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (30 bp):
TGTGCAATTGTATACATAAAATTTTGATTT
Found at i:52991063 original size:23 final size:23
Alignment explanation
Indices: 52991037--52991080 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
52991027 CTAGTTATGC
*
52991037 AAATACAAAAAGTTTTATAACTT
1 AAATACAAAAAGTTTCATAACTT
52991060 AAATACAAAAAGTTTCATAAC
1 AAATACAAAAAGTTTCATAAC
52991081 CCTAAACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.30
Consensus pattern (23 bp):
AAATACAAAAAGTTTCATAACTT
Found at i:52991086 original size:24 final size:23
Alignment explanation
Indices: 52991037--52991086 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
52991027 CTAGTTATGC
* *
52991037 AAATACAAAAAGTTTTATAACTT
1 AAATACAAAAAGTTTCATAACCT
52991060 AAATACAAAAAGTTTCATAACCCT
1 AAATACAAAAAGTTTCATAA-CCT
52991084 AAA
1 AAA
52991087 CCCATATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.54, C:0.14, G:0.04, T:0.28
Consensus pattern (23 bp):
AAATACAAAAAGTTTCATAACCT
Found at i:52991763 original size:21 final size:21
Alignment explanation
Indices: 52991737--52991781 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
52991727 TATTGTTAAT
*
52991737 TTTGTTATTATTTTAAAGGCA
1 TTTGTTAATATTTTAAAGGCA
*
52991758 TTTGTTAATATTTTAGAGGCA
1 TTTGTTAATATTTTAAAGGCA
52991779 TTT
1 TTT
52991782 ACATGTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.04, G:0.16, T:0.53
Consensus pattern (21 bp):
TTTGTTAATATTTTAAAGGCA
Found at i:52995550 original size:10 final size:10
Alignment explanation
Indices: 52995521--52995556 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
52995511 AATAGACATG
52995521 AAAATAAATA
1 AAAATAAATA
52995531 AAAATGAAATA
1 AAAAT-AAATA
*
52995542 AGAATAAATA
1 AAAATAAATA
52995552 AAAAT
1 AAAAT
52995557 TATACAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (10 bp):
AAAATAAATA
Found at i:52996142 original size:22 final size:21
Alignment explanation
Indices: 52996092--52996131 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
52996082 GGCAAATTTT
* *
52996092 TTTTTCTTTTATAAAATCAAC
1 TTTTTCTTTGAAAAAATCAAC
52996113 TTTTTCTTTGAAAAAATCA
1 TTTTTCTTTGAAAAAATCA
52996132 TTACTTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (21 bp):
TTTTTCTTTGAAAAAATCAAC
Found at i:52996443 original size:152 final size:151
Alignment explanation
Indices: 52996186--52996557 Score: 475
Period size: 152 Copynumber: 2.5 Consensus size: 151
52996176 AAATTTAAAT
* * * * * **
52996186 TTTCTTTTAGAATGACTTAAAAAATAGATTTTTATTTTTCAAAATCTAAACTTTCTC--CCTT--
1 TTTCCTTTAAAATGACTAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCTTTTTTAA
* * *
52996247 AAAAAAAACACTATTTTTCTTAATGATTAAAACTTTTATTTTGAAATAGTTGAAAACAATCAAAA
66 AAAAAAAACACTATTTTTCTTAAAGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAATCAAAA
* *
52996312 TTTTGTTTTAAAAGTTAAAAC
131 CTTTATTTTAAAAGTTAAAAC
*
52996333 TTTCCTTTAAAATGACTAAAAAAACAAAATTTTATTTTTCAAAATCTAAACTTTCTCATTTTTTA
1 TTTCCTTTAAAATGACTAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTC-TTTTTTA
* * * *
52996398 AAAAAAAAACTCTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATGGTTGAAAAAAATTAAA
65 AAAAAAAAACACTATTTTTCTTAAAGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAATCAAA
* *
52996463 ACTTTATTTTAAAATTTTAAAC
130 ACTTTATTTTAAAAGTTAAAAC
* * *
52996485 TTTCCTTTAAAGTAACTATAAAAAACATATTTTTATTTGTT-AAAATCTAAACTTTCTCTGTTTT
1 TTTCCTTTAAAATGACTA-AAAAAACAAATTTTTATTT-TTCAAAATCTAAACTTTCTCT-TTTT
52996549 TAAAAAAAA
63 TAAAAAAAA
52996558 TCAAAACTTT
Statistics
Matches: 194, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
147 51 0.26
150 2 0.01
152 92 0.47
153 47 0.24
154 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (151 bp):
TTTCCTTTAAAATGACTAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCTTTTTTAA
AAAAAAAACACTATTTTTCTTAAAGATTAAAACTTTTACTTTGAAATAGTTGAAAAAAATCAAAA
CTTTATTTTAAAAGTTAAAAC
Found at i:52997186 original size:22 final size:22
Alignment explanation
Indices: 52997160--52997255 Score: 156
Period size: 22 Copynumber: 4.4 Consensus size: 22
52997150 AAATCAGACA
52997160 CCCGTGTGAGACTGGGGACACG
1 CCCGTGTGAGACTGGGGACACG
52997182 CCCGTGTGAGACTGGGGACACG
1 CCCGTGTGAGACTGGGGACACG
*
52997204 CCCGTGTGAGACTGGGGACATG
1 CCCGTGTGAGACTGGGGACACG
* **
52997226 CCCGTGTGAGACCGGGGACGTG
1 CCCGTGTGAGACTGGGGACACG
52997248 CCCGTGTG
1 CCCGTGTG
52997256 CTTTCAACAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 71 1.00
ACGTcount: A:0.16, C:0.27, G:0.42, T:0.16
Consensus pattern (22 bp):
CCCGTGTGAGACTGGGGACACG
Found at i:53000224 original size:16 final size:16
Alignment explanation
Indices: 53000203--53000233 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
53000193 TGGGCCCCTA
53000203 AATGTAATGAAAAGTC
1 AATGTAATGAAAAGTC
53000219 AATGTAATGAAAAGT
1 AATGTAATGAAAAGT
53000234 AAACTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.19, T:0.26
Consensus pattern (16 bp):
AATGTAATGAAAAGTC
Found at i:53000304 original size:42 final size:43
Alignment explanation
Indices: 53000240--53000375 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 43
53000230 AAGTAAACTA
* * *
53000240 GAAAAGT-AAACGGACCTCCACACCTGGGTCTCTAAATGCAAT
1 GAAAAGTCAAATGGACCTTCACACATGGGTCTCTAAATGCAAT
* *
53000282 GAAAAGTCAAAT-GACCTTCACACATGGATCTCTAAATGAAAT
1 GAAAAGTCAAATGGACCTTCACACATGGGTCTCTAAATGCAAT
* * * * * *
53000324 AAAAAGT-GAATGGACC-TCAAAAATTGAGCCTCTAAATGCAAT
1 GAAAAGTCAAATGGACCTTCACACA-TGGGTCTCTAAATGCAAT
53000366 GAAAAGTCAA
1 GAAAAGTCAA
53000376 TGCAATAAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
41 8 0.11
42 63 0.84
43 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (43 bp):
GAAAAGTCAAATGGACCTTCACACATGGGTCTCTAAATGCAAT
Found at i:53000379 original size:16 final size:16
Alignment explanation
Indices: 53000358--53000388 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53000348 TGAGCCTCTA
*
53000358 AATGCAATGAAAAGTC
1 AATGCAATAAAAAGTC
53000374 AATGCAATAAAAAGT
1 AATGCAATAAAAAGT
53000389 AAACGGACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.16, T:0.19
Consensus pattern (16 bp):
AATGCAATAAAAAGTC
Found at i:53000421 original size:42 final size:42
Alignment explanation
Indices: 53000374--53000689 Score: 422
Period size: 42 Copynumber: 7.5 Consensus size: 42
53000364 ATGAAAAGTC
* * *
53000374 AATGCAATAAAAAGTAAACGGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
53000416 AATGCAATGAAAAGTCAAAT-GACCTCTACACCTAGGTCTCTA
1 AATGCAATGAAAAGT-AAATGGACCTCCACACCTGGGCCTCTA
* * * *
53000458 AATGAAATGAAAAGTGAATGGACCTCAACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * * * *
53000500 AATGCAATAAAAAGTAAATGGACCTTCACACATGAGTCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
53000542 AATGCAATGAAAAG-AGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTA-AATGGACCTCCACACCTGGGCCTCTA
*
53000584 AATGCAATGAAGAG-AGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTA-AATGGACCTCCACACCTGGGCCTCTA
*
53000626 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
53000668 AATGCAATGAAAAGTAAATGGA
1 AATGCAATGAAAAGTAAATGGA
53000690 GCCTAAATGC
Statistics
Matches: 242, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
41 4 0.02
42 234 0.97
43 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:53000422 original size:142 final size:142
Alignment explanation
Indices: 53000241--53000519 Score: 463
Period size: 142 Copynumber: 2.0 Consensus size: 142
53000231 AGTAAACTAG
53000241 AAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTCAAATGACCT-TCACAC
1 AAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTCAAATGACCTCT-ACAC
*
53000305 AT-GGATCTCTAAATGAAATAAAAAGTGAATGGACCTCAAAAATTGAGCCTCTAAATGCAATGAA
65 ATAGG-TCTCTAAATGAAATAAAAAGTGAATGGACCTCAAAAATTGAGCCTCTAAATGCAATAAA
*
53000369 AAGTCAATGCAATA
129 AAGTAAATGCAATA
*
53000383 AAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTCAAATGACCTCTACACC
1 AAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTCAAATGACCTCTACACA
* * * *
53000448 TAGGTCTCTAAATGAAATGAAAAGTGAATGGACCTCAACACTTGGGCCTCTAAATGCAATAAAAA
66 TAGGTCTCTAAATGAAATAAAAAGTGAATGGACCTCAAAAATTGAGCCTCTAAATGCAATAAAAA
53000513 GTAAATG
131 GTAAATG
53000520 GACCTTCACA
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
142 125 0.98
143 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (142 bp):
AAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTCAAATGACCTCTACACA
TAGGTCTCTAAATGAAATAAAAAGTGAATGGACCTCAAAAATTGAGCCTCTAAATGCAATAAAAA
GTAAATGCAATA
Found at i:53001127 original size:9 final size:9
Alignment explanation
Indices: 53001113--53001148 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
53001103 CTCTATTTTA
53001113 TTTTTTTGT
1 TTTTTTTGT
53001122 TTTTTTTGT
1 TTTTTTTGT
53001131 TTTGTTTTGT
1 TTT-TTTTGT
53001141 TGTTTTTT
1 T-TTTTTT
53001149 ATTTAGACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 12 0.48
10 11 0.44
11 2 0.08
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:53009222 original size:19 final size:19
Alignment explanation
Indices: 53009186--53009224 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
53009176 TTTTCATCAT
* *
53009186 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
53009205 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
53009224 A
1 A
53009225 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:53009740 original size:27 final size:27
Alignment explanation
Indices: 53009688--53009777 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
53009678 GTGACAGAGT
53009688 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
53009717 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
53009744 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
53009772 CACCAG
1 CACCAG
53009778 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:53024623 original size:37 final size:37
Alignment explanation
Indices: 53024547--53024623 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
53024537 TTAAAATTAA
*
53024547 TTATATTATGAATTGATACACATAATTTTGGACCTTC
1 TTATATTATGAATTGATACACATAATTTTGGACCGTC
*
53024584 TTATATTATGAATTGATACACATAATTTTGGATCGTC
1 TTATATTATGAATTGATACACATAATTTTGGACCGTC
53024621 TTA
1 TTA
53024624 GGCAGGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (37 bp):
TTATATTATGAATTGATACACATAATTTTGGACCGTC
Found at i:53025979 original size:4 final size:4
Alignment explanation
Indices: 53025970--53026034 Score: 64
Period size: 4 Copynumber: 16.5 Consensus size: 4
53025960 TGAATAAACA
* *
53025970 AATG AATG AAT- AAGTG AATG AATG TATG AATG -ATG AATG AATG AATT
1 AATG AATG AATG AA-TG AATG AATG AATG AATG AATG AATG AATG AATG
*
53026017 AAAG AAAT- AATG AATG AA
1 AATG -AATG AATG AATG AA
53026035 ATTGGGGCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
3 8 0.16
4 38 0.76
5 4 0.08
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:53026007 original size:15 final size:15
Alignment explanation
Indices: 53025971--53026015 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
53025961 GAATAAACAA
53025971 ATGAATGAAT-AAGTG
1 ATGAATGAATGAA-TG
*
53025986 AATGAATGTATGAATG
1 -ATGAATGAATGAATG
53026002 ATGAATGAATGAAT
1 ATGAATGAATGAAT
53026016 TAAAGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
16 11 0.42
17 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (15 bp):
ATGAATGAATGAATG
Found at i:53027948 original size:20 final size:20
Alignment explanation
Indices: 53027902--53027948 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
53027892 AGCTCGTTTC
* *
53027902 CAGCTAACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
53027922 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
53027942 CAGCTCA
1 CAGCTCA
53027949 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.34, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:53030146 original size:18 final size:17
Alignment explanation
Indices: 53030022--53030147 Score: 78
Period size: 18 Copynumber: 7.1 Consensus size: 17
53030012 CGAGAAAAGG
53030022 AGAAA-GAGATTGAAAA
1 AGAAATGAGATTGAAAA
*
53030038 AGAAATGA-A-AGAAAA
1 AGAAATGAGATTGAAAA
* *
53030053 AGAACAAGAAATTGAAAA
1 AGAA-ATGAGATTGAAAA
*
53030071 AGAGAGTGAGATTGAAGAA
1 AGA-AATGAGATTGAA-AA
* * *
53030090 AGAAACGAGAGTGTAAA
1 AGAAATGAGATTGAAAA
* *
53030107 AGAAACGAGTGTCATGGAAAA
1 AGAAATGA--G--ATTGAAAA
53030128 AGAAATTGAGATTGAAAA
1 AGAAA-TGAGATTGAAAA
53030146 AG
1 AG
53030148 GATGTGAAAA
Statistics
Matches: 84, Mismatches: 15, Indels: 20
0.71 0.13 0.17
Matches are distributed among these distances:
15 9 0.11
16 9 0.11
17 13 0.15
18 33 0.39
19 7 0.08
20 1 0.01
21 10 0.12
22 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.26, T:0.13
Consensus pattern (17 bp):
AGAAATGAGATTGAAAA
Found at i:53030202 original size:48 final size:47
Alignment explanation
Indices: 53030123--53030228 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
53030113 GAGTGTCATG
*
53030123 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
53030171 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
53030219 GAAAAAGAAA
1 GAAAAAGAAA
53030229 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:53031945 original size:20 final size:20
Alignment explanation
Indices: 53031899--53031945 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
53031889 AGCTCGTTTC
*
53031899 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
53031919 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
53031939 CAGCTCA
1 CAGCTCA
53031946 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:53038323 original size:53 final size:54
Alignment explanation
Indices: 53038195--53038449 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
53038185 ACACGGGTAC
* * * **
53038195 CTTACCATTGCCATGACTTGTCATGGTCTTATGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
53038244 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
53038297 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
53038352 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
53038405 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
53038450 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:53038386 original size:108 final size:110
Alignment explanation
Indices: 53038242--53038439 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
53038232 ATCCTTTTGA
* *
53038242 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
53038305 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
53038350 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
53038415 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
53038440 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:53040452 original size:10 final size:10
Alignment explanation
Indices: 53040446--53040502 Score: 60
Period size: 10 Copynumber: 5.4 Consensus size: 10
53040436 GTGTAAAAAT
*
53040446 AAATAAATAT
1 AAATAAATAA
*
53040456 AAATAGACATGA
1 AAATA-A-ATAA
53040468 AAATAAATAA
1 AAATAAATAA
53040478 AAATGAAATAA
1 AAAT-AAATAA
*
53040489 GAATAAATAA
1 AAATAAATAA
53040499 AAAT
1 AAAT
53040503 TATACAAGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 21 0.54
11 11 0.28
12 7 0.18
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAATAA
Found at i:53040495 original size:21 final size:22
Alignment explanation
Indices: 53040446--53040502 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
53040436 GTGTAAAAAT
* *
53040446 AAATAAATATAAATAGACATGA
1 AAATAAATAAAAATAGAAATGA
53040468 AAATAAATAAAAAT-GAAAT-A
1 AAATAAATAAAAATAGAAATGA
53040488 AGAATAAATAAAAAT
1 A-AATAAATAAAAAT
53040503 TATACAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 2 0.06
21 17 0.53
22 13 0.41
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (22 bp):
AAATAAATAAAAATAGAAATGA
Found at i:53041199 original size:147 final size:144
Alignment explanation
Indices: 53041048--53041335 Score: 373
Period size: 147 Copynumber: 2.0 Consensus size: 144
53041038 AAGTTTTCTT
* *
53041048 TTAAAAAAAATCATTACTTTTCTTAAAAATCAAAAC-CTTA-TTTCGGAATAGTTAAAAAAAATC
1 TTAAAAAAAA-CACTACTTTTCTTAAAAATCAAAACTCTTACTTT-GAAATAGTTAAAAAAAATC
* * *
53041111 AAAACTTTATTTTAAAAATTTAAAGTTTCCTTTAAAATGACTTAAAAAATATATTTTTATTTTTC
64 AAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATGAC-TAAAAAAAACA-TTTT-TTTTTC
* *
53041176 AAAATCTTAATTTTCTCCC
126 AAAATCTAAACTTTCTCCC
* * ** * *
53041195 TTAAAAAAAACACTATTTTTCTTAAAGATTGAAGCTTTTACTTTGAAATAGTTAAAAAAAATCAA
1 TTAAAAAAAACACTACTTTTCTTAAAAATCAAAACTCTTACTTTGAAATAGTTAAAAAAAATCAA
* * *
53041260 AACTTTGTTTTAGAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAACATTTTTTTTTCAAAAT
66 AACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAAACATTTTTTTTTCAAAAT
53041325 CTAAACTTTCT
131 CTAAACTTTCT
53041336 TCTTTCTTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
144 20 0.16
145 4 0.03
146 28 0.23
147 68 0.55
148 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.41
Consensus pattern (144 bp):
TTAAAAAAAACACTACTTTTCTTAAAAATCAAAACTCTTACTTTGAAATAGTTAAAAAAAATCAA
AACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAAACATTTTTTTTTCAAAAT
CTAAACTTTCTCCC
Found at i:53041868 original size:73 final size:73
Alignment explanation
Indices: 53041785--53041931 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
53041775 TTCATGTTTA
53041785 TACATTGTTTTTTTAATCTTACTCATTTGTAAAAAATAATAATAATATTTACTAATAATAATAGT
1 TACATTGTTTTTTTAATCTTACTCATTTGTAAAAAATAATAATAATATTTACTAATAATAATAGT
53041850 AGTAGTAG
66 AGTAGTAG
53041858 TACATTGTTTTTTTAATCTTACTCATTTGTAAAAAATAATAATAATATTTACTAATAATAATAGT
1 TACATTGTTTTTTTAATCTTACTCATTTGTAAAAAATAATAATAATATTTACTAATAATAATAGT
53041923 AGTAGTAG
66 AGTAGTAG
53041931 T
1 T
53041932 GATAATAATA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (73 bp):
TACATTGTTTTTTTAATCTTACTCATTTGTAAAAAATAATAATAATATTTACTAATAATAATAGT
AGTAGTAG
Found at i:53042318 original size:24 final size:22
Alignment explanation
Indices: 53042278--53042323 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
53042268 AGATAAAAAA
*
53042278 ATTTTTTACCAACTTTAAAATT
1 ATTTTTTACCAAATTTAAAATT
53042300 ATTTTATTAACCAAATTTAAAATT
1 ATTTT-TT-ACCAAATTTAAAATT
53042324 TAAACTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 2 0.10
24 14 0.67
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTTTTACCAAATTTAAAATT
Found at i:53045633 original size:46 final size:46
Alignment explanation
Indices: 53045566--53045712 Score: 120
Period size: 46 Copynumber: 3.2 Consensus size: 46
53045556 GTTCTTGCCC
*
53045566 AGGTTCCCAGCTCCTA-TATATGTTGCAGATAGGAGAATACAGTTTT
1 AGGTTCCCAGCTCC-AGCATATGTTGCAGATAGGAGAATACAGTTTT
* * ** * * *
53045612 AGGTTCCCAGTTTCAGCATATGTTGTGGACT-GGAGAATATAGATTC
1 AGGTTCCCAGCTCCAGCATATGTTGCAGA-TAGGAGAATACAGTTTT
* * * **
53045658 AAGTTCCCAGCTCCTGCATATGTTGGAGGCAGGAGAATACA-TGTTT
1 AGGTTCCCAGCTCCAGCATATGTTGCAGATAGGAGAATACAGT-TTT
*
53045704 AGATTCCCA
1 AGGTTCCCA
53045713 AATCCTATAT
Statistics
Matches: 76, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
45 1 0.01
46 74 0.97
47 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (46 bp):
AGGTTCCCAGCTCCAGCATATGTTGCAGATAGGAGAATACAGTTTT
Found at i:53045725 original size:92 final size:92
Alignment explanation
Indices: 53045568--53045742 Score: 219
Period size: 92 Copynumber: 1.9 Consensus size: 92
53045558 TCTTGCCCAG
* * * ** *
53045568 GTTCCCAGCTCCTATATATGTTGCAGATAGGAGAATACAGTTTTAGGTTCCCAGTTTCAGCATAT
1 GTTCCCAGCTCCTACATATGTTGCAGACAGGAGAATACAGTTTTAGATTCCCAAATCCAGCATAT
*
53045633 GTTGTGGACTGGAGAATATAGATTCAA
66 GTTGTGGACAGGAGAATATAGATTCAA
* * * *
53045660 GTTCCCAGCTCCTGCATATGTTGGAGGCAGGAGAATACA-TGTTTAGATTCCCAAATCCTA-TAT
1 GTTCCCAGCTCCTACATATGTTGCAGACAGGAGAATACAGT-TTTAGATTCCCAAATCC-AGCAT
53045723 ATGTTGTGGACAGGAGAATA
64 ATGTTGTGGACAGGAGAATA
53045743 CAGTAATAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
91 1 0.01
92 68 0.97
93 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (92 bp):
GTTCCCAGCTCCTACATATGTTGCAGACAGGAGAATACAGTTTTAGATTCCCAAATCCAGCATAT
GTTGTGGACAGGAGAATATAGATTCAA
Found at i:53052502 original size:40 final size:39
Alignment explanation
Indices: 53052418--53052509 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 39
53052408 GACTATGTTT
*
53052418 GGCACTAAGTGTGCGATTCAAACTGCTTTGGCTATAAATA
1 GGCACTAAGTGTGCGATTCAAACTACTTTGGCTAT-AATA
** *
53052458 -GCACTAAGTGTGCGAGTTGGAATTACTTTGGCTAT-ATGA
1 GGCACTAAGTGTGCGA-TTCAAACTACTTTGGCTATAAT-A
53052497 GGCACTAAGTGTG
1 GGCACTAAGTGTG
53052510 AGACACTGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.04
39 16 0.36
40 27 0.60
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (39 bp):
GGCACTAAGTGTGCGATTCAAACTACTTTGGCTATAATA
Found at i:53055698 original size:8 final size:8
Alignment explanation
Indices: 53055687--53055716 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
53055677 AAAATTTCAA
53055687 GATTTTGG
1 GATTTTGG
*
53055695 GATTTTTG
1 GATTTTGG
53055703 GATTTTGG
1 GATTTTGG
53055711 GATTTT
1 GATTTT
53055717 TGGGGCGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (8 bp):
GATTTTGG
Found at i:53055703 original size:9 final size:9
Alignment explanation
Indices: 53055689--53055720 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
53055679 AATTTCAAGA
53055689 TTTTGGGAT
1 TTTTGGGAT
53055698 TTTT-GGA-
1 TTTTGGGAT
53055705 TTTTGGGAT
1 TTTTGGGAT
53055714 TTTTGGG
1 TTTTGGG
53055721 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 4 0.19
8 6 0.29
9 11 0.52
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (9 bp):
TTTTGGGAT
Found at i:53055706 original size:16 final size:16
Alignment explanation
Indices: 53055687--53055719 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
53055677 AAAATTTCAA
53055687 GATTTTGGGATTTTTG
1 GATTTTGGGATTTTTG
53055703 GATTTTGGGATTTTTG
1 GATTTTGGGATTTTTG
53055719 G
1 G
53055720 GGCGTTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.33, T:0.55
Consensus pattern (16 bp):
GATTTTGGGATTTTTG
Found at i:53061921 original size:16 final size:16
Alignment explanation
Indices: 53061896--53061928 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
53061886 GAAAATTCAA
*
53061896 GATTTTAGGATTTTTG
1 GATTTCAGGATTTTTG
53061912 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
53061928 G
1 G
53061929 GGCGTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:53063598 original size:5 final size:5
Alignment explanation
Indices: 53063588--53063616 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
53063578 GTATTTATAT
53063588 ATGTA ATGTA ATGTA ATGTA ATGTA ATGT
1 ATGTA ATGTA ATGTA ATGTA ATGTA ATGT
53063617 TGTATCATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (5 bp):
ATGTA
Found at i:53065996 original size:22 final size:22
Alignment explanation
Indices: 53065968--53066013 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
53065958 ATAGCATAAT
53065968 GCAACTCAATTTGAATTCAAAA
1 GCAACTCAATTTGAATTCAAAA
53065990 GCAACTCAATTTGAATTCAAAA
1 GCAACTCAATTTGAATTCAAAA
53066012 GC
1 GC
53066014 CTAACACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (22 bp):
GCAACTCAATTTGAATTCAAAA
Found at i:53086769 original size:52 final size:52
Alignment explanation
Indices: 53086697--53086975 Score: 461
Period size: 52 Copynumber: 5.4 Consensus size: 52
53086687 TATCTAGGAT
* * *
53086697 ATGGCATTGTGCTAATTGAAATAAGACCATGTCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
53086749 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
* * *
53086801 ATGACAATGTGCTAAGTGAAATAAGACCATGTCATCTAAATGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
*
53086853 ATGGAAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
*
53086905 ATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
*
53086957 ATGGC-ATGGTGCCAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
53086976 GAAATTTCCC
Statistics
Matches: 213, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
51 2 0.01
52 211 0.99
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
Found at i:53087080 original size:51 final size:51
Alignment explanation
Indices: 53087000--53087197 Score: 326
Period size: 51 Copynumber: 3.9 Consensus size: 51
53086990 GAACCTTAGT
* *
53087000 AATAAAATAACTTTGGACACAAGTATGGTACTATGTGAAGGCCACTTTGTG
1 AATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
* * *
53087051 AATATAATAGCTTTGGAAACAAGTGTGGTACTATGTGAAGGCCACTTTATG
1 AATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
53087102 AATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 AATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
*
53087153 AATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 AATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
53087198 CGTGTATCCG
Statistics
Matches: 137, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 1 0.01
51 136 0.99
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
AATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
Found at i:53100775 original size:8 final size:8
Alignment explanation
Indices: 53100758--53100807 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
53100748 AAGTCGTACC
53100758 TTCGACTT
1 TTCGACTT
*
53100766 TTCGAATTT
1 TTCG-ACTT
*
53100775 TTGGA-TT
1 TTCGACTT
53100782 TTCGACTT
1 TTCGACTT
53100790 TTCGACTT
1 TTCGACTT
*
53100798 TTCGGCTT
1 TTCGACTT
53100806 TT
1 TT
53100808 AAGCTTTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 6 0.17
8 24 0.67
9 6 0.17
ACGTcount: A:0.12, C:0.18, G:0.16, T:0.54
Consensus pattern (8 bp):
TTCGACTT
Found at i:53100807 original size:24 final size:24
Alignment explanation
Indices: 53100758--53100807 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
53100748 AAGTCGTACC
*
53100758 TTCGACTTTTCGAATTTTTGGATT
1 TTCGACTTTTCGAATTTTCGGATT
* *
53100782 TTCGACTTTTCGACTTTTCGGCTT
1 TTCGACTTTTCGAATTTTCGGATT
53100806 TT
1 TT
53100808 AAGCTTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.18, G:0.16, T:0.54
Consensus pattern (24 bp):
TTCGACTTTTCGAATTTTCGGATT
Found at i:53116128 original size:326 final size:321
Alignment explanation
Indices: 53115534--53116175 Score: 919
Period size: 326 Copynumber: 2.0 Consensus size: 321
53115524 ATATGAAATG
53115534 TGTATATATGCCGTGATGGAATTGACTTGTGATGATTCAATGAAAATGTGATGATAGCTTTGTAT
1 TGTATATATGCCGTGATGGAATTGACTTGTGATGATTCAATGAAAATGTGATGATAGCTTTGTAT
* * * * **
53115599 CTCGGAAGTCCTGGGTGACCTTGAGGTAGGATTCGTATATCATGACACCATGGTTAATGAGATCC
66 CTCGAAAGTCCTAGGTGACCCTGAGGTAGGATTCGGATATCAAAACACCATGGTTAATGAGATCC
* ** * * *
53115664 CGTGTAAGACGATGTTTGGGACTTGGCATCAGCATCAAGATGTGATCCCGTATAAGACCATGTCA
131 CGTGTAAGACCATGCCTGGGACATGGCATCAACATCAAGATGTGATCCCGTATAAGACCATATCA
* * *
53115729 GGGATATGGCTTCGATATCGTTAAGTGATTTCGTGTAAGACCATATCTCGGACATGGCATTGATA
196 GGGATATGACTTCGACATCGTTAAGTGATTTCGTGTAAGACCATATCTCGGACATGGCATAGATA
53115794 AGAGATCCCGTATAAGACCATATCTGGGACATGGCATC-GACATCAGTATGAGATCCTGATC
261 AGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAG-CATCAGTATGAGATCCTGATC
* *
53115855 TGTATATATGCCTTGATGGAATTGACTTGTGATGATTTAATGAAAATGTGATGATAGCTTT-TAT
1 TGTATATATGCCGTGATGGAATTGACTTGTGATGATTCAATGAAAATGTGATGATAGCTTTGTAT
*
53115919 CTTGAAAGTCCTAGGTGACCCTGAGGAATGCTTAGGATTCGGATATCAAAACACCATGGTTAATG
66 CTCGAAAGTCCTAGGTGACCCTGA-G---G--TAGGATTCGGATATCAAAACACCATGGTTAATG
* * * * *
53115984 AGATCCTGTGTAAGACCATGCCTGGGACATGGCATCAACATTAATATGTGTTCCTGTATAAGACC
125 AGATCCCGTGTAAGACCATGCCTGGGACATGGCATCAACATCAAGATGTGATCCCGTATAAGACC
* * * * * *
53116049 ATATTAGGGATATGACTTCGGCATCGTTAAGTGATTTTGTGTAAGACTATATTTGGGACATGGCA
190 ATATCAGGGATATGACTTCGACATCGTTAAGTGATTTCGTGTAAGACCATATCTCGGACATGGCA
* * *
53116114 TAGATAATAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGTATGAGATCC
255 TAGATAAGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTATGAGATCC
53116176 CATGTAAGGC
Statistics
Matches: 282, Mismatches: 32, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
320 23 0.08
321 60 0.21
324 1 0.00
326 197 0.70
327 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (321 bp):
TGTATATATGCCGTGATGGAATTGACTTGTGATGATTCAATGAAAATGTGATGATAGCTTTGTAT
CTCGAAAGTCCTAGGTGACCCTGAGGTAGGATTCGGATATCAAAACACCATGGTTAATGAGATCC
CGTGTAAGACCATGCCTGGGACATGGCATCAACATCAAGATGTGATCCCGTATAAGACCATATCA
GGGATATGACTTCGACATCGTTAAGTGATTTCGTGTAAGACCATATCTCGGACATGGCATAGATA
AGAGATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCAGTATGAGATCCTGATC
Found at i:53116196 original size:48 final size:48
Alignment explanation
Indices: 53115981--53116340 Score: 187
Period size: 48 Copynumber: 7.8 Consensus size: 48
53115971 ACCATGGTTA
* * * * *
53115981 ATGAGATCCTGTGTAAGACCATGCCTGGGACATGGCATCAACATTAAT
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
* * * * * * * * *
53116029 ATGTGTTCCTGTATAAGACCATAT-TAGGGATATGACTTCGGCA-TCGTT
1 ATGAGATCCCGTATAAGACCATGTCT-GGGACATGGCATCAGCATTAG-T
* * *** * * * *
53116077 AAGTGATTTTGTGTAAGACTATATTTGGGACATGGCAT-AG-A-TA--
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
53116120 AT-AGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
* * * * * ** * *
53116167 ATGAGATCCCATGTAAGGCCATATCTGGGATATGGCATTGGCATCAAT
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
* * **
53116215 GTGAGGTTTCGTATAAGACCATGTCTGGGACATGGCATCAGCATT-GAT
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAG-T
* * *
53116263 ATGAGA-CTTCGTATAAGACCATATCTGGGATATGGCATC-G-A-TATGT
1 ATGAGATC-CCGTATAAGACCATGTCTGGGACATGGCATCAGCATTA-GT
* *
53116309 -T--G-TCCCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGATCCCGTATAAGACCATGTCTGGGACATGGC
53116341 TTTAGCACTC
Statistics
Matches: 234, Mismatches: 64, Indels: 34
0.70 0.19 0.10
Matches are distributed among these distances:
42 50 0.21
43 5 0.02
44 1 0.00
45 4 0.02
46 4 0.02
47 7 0.03
48 162 0.69
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (48 bp):
ATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGT
Found at i:53116232 original size:138 final size:140
Alignment explanation
Indices: 53115978--53116301 Score: 322
Period size: 138 Copynumber: 2.3 Consensus size: 140
53115968 AACACCATGG
* * * * * **
53115978 TTAATGAGATCCTGTGTAAGACCATGCCTGGGACATGGCATCAACATTAATATGTGTTCCTGTAT
1 TTAATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAACATTAATATGAGATCCCATAT
* * * *
53116043 AAGACCATATTAGGGATATGACTTCGGCATCGTTAAGTGATTTTGTGTAAGACTATATTTGGGAC
66 AAGACCATATTAGGGATATGACTTCGGCATC--TAAGTGATTTCGTATAAGACCATATCTGGGAC
53116108 ATGGCAT-AG-A
129 ATGGCATCAGCA
* * *
53116118 -TAAT-AGATCCCGTATAAGACCATGTCTGGGACATGGCATCAGCATTAGTATGAGATCCCATGT
1 TTAATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAACATTAATATGAGATCCCATAT
* * *
53116181 AAGGCCATATCT-GGGATATGGCATT-GGCATC-AATGTGAGGTTTCGTATAAGACCATGTCTGG
66 AAGACCATAT-TAGGGATATGAC-TTCGGCATCTAA-GTGA--TTTCGTATAAGACCATATCTGG
53116243 GACATGGCATCAGCA
126 GACATGGCATCAGCA
* * *
53116258 TTGATATGAGA-CTTCGTATAAGACCATATCTGGGATATGGCATC
1 TT-A-ATGAGATC-CCGTATAAGACCATGTCTGGGACATGGCATC
53116302 GATATGTTGT
Statistics
Matches: 152, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
135 2 0.01
136 4 0.03
138 100 0.66
139 9 0.06
140 1 0.01
141 1 0.01
142 1 0.01
143 3 0.02
144 31 0.20
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (140 bp):
TTAATGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCAACATTAATATGAGATCCCATAT
AAGACCATATTAGGGATATGACTTCGGCATCTAAGTGATTTCGTATAAGACCATATCTGGGACAT
GGCATCAGCA
Found at i:53117454 original size:13 final size:13
Alignment explanation
Indices: 53117438--53117463 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53117428 CTTAGGACAT
53117438 GGGCGTGTACCCA
1 GGGCGTGTACCCA
53117451 GGGCGTGTACCCA
1 GGGCGTGTACCCA
53117464 AGCCGTGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
GGGCGTGTACCCA
Found at i:53123974 original size:93 final size:93
Alignment explanation
Indices: 53123866--53124781 Score: 1787
Period size: 93 Copynumber: 9.8 Consensus size: 93
53123856 CGCCCATAAG
* ** * *
53123866 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53123931 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53123959 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124024 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124052 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124117 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124145 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124210 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124238 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124303 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124331 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124396 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124424 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124489 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124517 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124582 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124610 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124675 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
53124703 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53124768 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
53124782 TCAACCATCC
Statistics
Matches: 818, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 818 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:53126718 original size:48 final size:49
Alignment explanation
Indices: 53126658--53126755 Score: 153
Period size: 48 Copynumber: 2.0 Consensus size: 49
53126648 TGAGATGCTT
* * *
53126658 AAGAGAGTTCTGACTGAGGCCCCTGTCTTAATACAGCCGGAGTCTGGGA
1 AAGAGAGTTCTGACTGAGGCCCCTATCTTAATACAGCCAGAATCTGGGA
*
53126707 AAGA-AGTTCTGACTGAGGCCCCTATCTTAATATAGCCAGAATCTGGGA
1 AAGAGAGTTCTGACTGAGGCCCCTATCTTAATACAGCCAGAATCTGGGA
53126755 A
1 A
53126756 GAAATTTACT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 41 0.91
49 4 0.09
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
AAGAGAGTTCTGACTGAGGCCCCTATCTTAATACAGCCAGAATCTGGGA
Found at i:53132062 original size:11 final size:11
Alignment explanation
Indices: 53132046--53132078 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
53132036 ATAAAAAGGC
53132046 ATTCAATACCA
1 ATTCAATACCA
53132057 ATTCAATACCA
1 ATTCAATACCA
*
53132068 A-CCAATACCA
1 ATTCAATACCA
53132078 A
1 A
53132079 ACATATCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.21
Consensus pattern (11 bp):
ATTCAATACCA
Found at i:53139999 original size:27 final size:27
Alignment explanation
Indices: 53139891--53140001 Score: 107
Period size: 27 Copynumber: 4.1 Consensus size: 27
53139881 AATCTCATAT
* * *
53139891 TTGTAGGCTAGTATTACTGAAAT-ACC
1 TTGTAGGGTAGAATTACTGAAATGCCC
*
53139917 TCTGCAGGGTAGAATTACTGAAATGCCC
1 T-TGTAGGGTAGAATTACTGAAATGCCC
* * *** *
53139945 CTATACCTTAGAATTATTGAAATGCCC
1 TTGTAGGGTAGAATTACTGAAATGCCC
*
53139972 TTGTAGGGTAGAATTACTAAAATGCCC
1 TTGTAGGGTAGAATTACTGAAATGCCC
53139999 TTG
1 TTG
53140002 GTTTACAAAA
Statistics
Matches: 65, Mismatches: 18, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
26 1 0.02
27 62 0.95
28 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (27 bp):
TTGTAGGGTAGAATTACTGAAATGCCC
Found at i:53140027 original size:26 final size:26
Alignment explanation
Indices: 53139983--53140052 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 26
53139973 TGTAGGGTAG
*
53139983 AATTACTAAAATGCCCTTGGTTTACAA
1 AATTACT-AAATACCCTTGGTTTACAA
53140010 AATTACTAAATACCCTTGGTTTACAA
1 AATTACTAAATACCCTTGGTTTACAA
*
53140036 AATTACCAAAATACCCT
1 AATTA-CTAAATACCCT
53140053 CGATTAGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 23 0.57
27 17 0.43
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (26 bp):
AATTACTAAATACCCTTGGTTTACAA
Found at i:53140327 original size:27 final size:27
Alignment explanation
Indices: 53139983--53140349 Score: 266
Period size: 27 Copynumber: 13.7 Consensus size: 27
53139973 TGTAGGGTAG
* * * **
53139983 AATTACTAAAATGCCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * **
53140010 AATTA-CTAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
53140036 AATTACCAAAATACCCTCGATTAGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
53140063 AATTACCAAACTACCCCT-ATTTTGTGA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* ** ** *
53140090 AATTACCGAAATACCCTCAACCTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
53140117 AATTATCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
53140144 AATTACCAAAATACCCTCGATTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
53140171 AATTACCAAAATACCCTTGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
53140198 AATTACCAAAATACCCTTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
53140225 AATTA--AAAGAAACCAC-TGA-TT-TAC
1 AATTACCAAA-ATACC-CTTGATTTGTAA
* **
53140249 AATTACAAAAATACCCTTGACTTTCAAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * *
53140277 AAATA-CAGAAATACCATT-AGTTTGCAA
1 AATTACCA-AAATACCCTTGA-TTTGTAA
* *
53140304 AATTACCAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
53140331 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
53140350 TAGGGTGAAA
Statistics
Matches: 272, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
24 7 0.03
25 12 0.04
26 33 0.12
27 203 0.75
28 17 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:53140641 original size:41 final size:41
Alignment explanation
Indices: 53140584--53140701 Score: 182
Period size: 41 Copynumber: 2.9 Consensus size: 41
53140574 GAAGAAATTG
* *
53140584 AGGATCACATGGTTGCTTGACGACCGTGGACCCACCGATTC
1 AGGATCACATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * *
53140625 AGGATCACATGGTTGCTTGACAACTGTAGATCCACCGATTA
1 AGGATCACATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
53140666 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
1 AGGATCACATGGTTGCTTGACGACCGTGGATCCACC
53140702 AGTGGCTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (41 bp):
AGGATCACATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:53143975 original size:26 final size:27
Alignment explanation
Indices: 53143930--53144330 Score: 148
Period size: 27 Copynumber: 14.9 Consensus size: 27
53143920 GTATTATAGC
*
53143930 AATTACTGAAATAGCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
53143957 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
** *
53143983 AATTACCAAAATACCCTCT--ATTAGCAA
1 AATTACTGAAATACCCT-TGGTTTA-CAA
** ** **
53144010 AATTACCAAAATACCCTTGACTTGTAA
1 AATTACTGAAATACCCTTGGTTTACAA
** * * **
53144037 AATTACCAAAACACCCCTGGTTTGTAA
1 AATTACTGAAATACCCTTGGTTTACAA
** ** ***
53144064 AATTACCAAAATACCCTTAATTTGTGA
1 AATTACTGAAATACCCTTGGTTTACAA
* *** **
53144091 AATTA-TCGAAATACCCTCGACCTGTAA
1 AATTACT-GAAATACCCTTGGTTTACAA
** * ** ** *
53144118 AATTACCAAAATACCCTCGACTTGTAT
1 AATTACTGAAATACCCTTGGTTTACAA
** * **
53144145 AATTACCAAAATACCCTTGATTTGTAA
1 AATTACTGAAATACCCTTGGTTTACAA
** * *
53144172 AATTACCAAAATACCCCTGATTTGA-AA
1 AATTACTGAAATACCCTTGGTTT-ACAA
* * * **
53144199 AATTACCGAAATACCTTTGATTTGGAA
1 AATTACTGAAATACCCTTGGTTTACAA
* **
53144226 AATTACAGAAATACCCTTAATTTACAA
1 AATTACTGAAATACCCTTGGTTTACAA
* ** *
53144253 AATTACAGAAATACCCTTAATTTTCAA
1 AATTACTGAAATACCCTTGGTTTACAA
* **
53144280 AACTTACAGAAATACGATTGGTTTGA-AA
1 AA-TTACTGAAATACCCTTGGTTT-ACAA
*
53144308 AATTACCGAAATACCCTTGGTTT
1 AATTACTGAAATACCCTTGGTTT
53144331 GTAGATTTAC
Statistics
Matches: 313, Mismatches: 50, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
26 27 0.09
27 262 0.84
28 24 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTTACAA
Found at i:53144010 original size:27 final size:28
Alignment explanation
Indices: 53143981--53144344 Score: 303
Period size: 27 Copynumber: 13.4 Consensus size: 28
53143971 CTTGGTTTAC
* *
53143981 AAAATTACCAAAATACCCTCT-ATTAGC
1 AAAATTACCAAAATACCCTCTGATTTGT
*
53144008 AAAATTACCAAAATACCCT-TGACTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* *
53144035 AAAATTACCAAAACACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
53144062 AAAATTACCAAAATACCCT-TAATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* * * **
53144089 GAAATTATCGAAATACCCTC-GACCTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
53144116 AAAATTACCAAAATACCCTC-GACTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
53144143 ATAATTACCAAAATACCCT-TGATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
53144170 AAAATTACCAAAATACCC-CTGATTTGA
1 AAAATTACCAAAATACCCTCTGATTTGT
* * *
53144197 AAAATTACCGAAATA-CCTTTGATTTGG
1 AAAATTACCAAAATACCCTCTGATTTGT
* **
53144224 AAAATTA-CAGAAATACCCT-TAATTTAC
1 AAAATTACCA-AAATACCCTCTGATTTGT
*
53144251 AAAATTA-CAGAAATACCCT-TAATTT-T
1 AAAATTACCA-AAATACCCTCTGATTTGT
** * *
53144277 CAAAACTTA-CAGAAATACGAT-TGGTTTGA
1 -AAAA-TTACCA-AAATACCCTCTGATTTGT
* *
53144306 AAAATTACCGAAATACCCT-TGGTTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* *
53144333 AGATTTACCAAA
1 AAAATTACCAAA
53144345 GCACCCTTAT
Statistics
Matches: 281, Mismatches: 43, Indels: 26
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.01
27 252 0.90
28 25 0.09
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
AAAATTACCAAAATACCCTCTGATTTGT
Found at i:53144649 original size:41 final size:40
Alignment explanation
Indices: 53144604--53144710 Score: 160
Period size: 41 Copynumber: 2.6 Consensus size: 40
53144594 GATGATCACG
* *
53144604 TGGTTGCTTGATGAGCGTGGATCCACCGATTGAGGATCGCA
1 TGGTTGCTTGATGA-CGTGGATCCACCAATTAAGGATCGCA
*
53144645 TGGTTGCTTGACGACTGTGGATCCACCAATTAAGGATCGCA
1 TGGTTGCTTGATGAC-GTGGATCCACCAATTAAGGATCGCA
53144686 TGGTTGCTTGATGACCGTGGATCCA
1 TGGTTGCTTGATGA-CGTGGATCCA
53144711 TCGGTGGCTT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 1 0.02
41 58 0.97
42 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (40 bp):
TGGTTGCTTGATGACGTGGATCCACCAATTAAGGATCGCA
Done.