Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 157 of 290
Found at i:53499713 original size:24 final size:23
Alignment explanation
Indices: 53499681--53499725 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
53499671 GTAGATCGGT
*
53499681 AAATCCCGAAATGCCGAAAAGTCG
1 AAATCCCGAAAAGCC-AAAAGTCG
*
53499705 AAATGCCGAAAAGCCAAAAGT
1 AAATCCCGAAAAGCCAAAAGT
53499726 TTGGCTACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (23 bp):
AAATCCCGAAAAGCCAAAAGTCG
Found at i:53501375 original size:21 final size:21
Alignment explanation
Indices: 53501351--53501392 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
53501341 TCATCAGATC
*
53501351 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
53501372 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
53501393 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:53503607 original size:30 final size:30
Alignment explanation
Indices: 53503573--53503632 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
53503563 ATTTAATACG
53503573 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
53503603 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
53503633 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:53505686 original size:28 final size:29
Alignment explanation
Indices: 53505574--53505698 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
53505564 GAAAGCATGT
*
53505574 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
53505603 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
53505632 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
53505661 ATATGAATGAGA-TTGGGCCTAGTGGGCG
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
53505689 ATATGCATGT
1 ATATGAATGT
53505699 ATGTAGACTT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 22 0.25
29 66 0.75
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:53507211 original size:15 final size:17
Alignment explanation
Indices: 53507173--53507205 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
53507163 GTAGCTTCGC
53507173 AATGAGATCTATAAAAA
1 AATGAGATCTATAAAAA
53507190 AATGAGATCTATAAAA
1 AATGAGATCTATAAAA
53507206 TAGAGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (17 bp):
AATGAGATCTATAAAAA
Found at i:53507844 original size:48 final size:48
Alignment explanation
Indices: 53507789--53507993 Score: 383
Period size: 48 Copynumber: 4.3 Consensus size: 48
53507779 GCACATCGCC
* * *
53507789 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCGCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
53507837 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
53507885 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
53507933 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
53507981 TACATATTTCACA
1 TACATATTTCACA
53507994 GTACATCAAT
Statistics
Matches: 154, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 154 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
Found at i:53509994 original size:85 final size:85
Alignment explanation
Indices: 53509865--53510043 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
53509855 TATTTTATTG
*
53509865 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
53509930 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
53509950 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
53510015 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
53510035 CCCATGCTC
1 CCCATGCTC
53510044 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:53514074 original size:14 final size:14
Alignment explanation
Indices: 53514055--53514088 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
53514045 TCCCGAAGTG
* *
53514055 GATGATATGATTAT
1 GATGATATCACTAT
53514069 GATGATATCACTAT
1 GATGATATCACTAT
53514083 GATGAT
1 GATGAT
53514089 GAAAGTCCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (14 bp):
GATGATATCACTAT
Found at i:53515310 original size:62 final size:62
Alignment explanation
Indices: 53515212--53515336 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
53515202 TTTTCTCGAA
* *
53515212 TAAGTTAATTTAAGGTTAATGTCTTCAATCGGGATATTCTTGTTATTTTGAGCTGAAGTTAT
1 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
*
53515274 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAATTGAAGTTAT
1 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
53515336 T
1 T
53515337 TTTGAGCTGA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (62 bp):
TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
Found at i:53519098 original size:151 final size:151
Alignment explanation
Indices: 53518824--53519125 Score: 604
Period size: 151 Copynumber: 2.0 Consensus size: 151
53518814 TGGGACAGTG
53518824 ATATCGATTTTTGATTGCATGCAAGACCGCGTCTGGGACGTTGGCATTGTATATGTTTTCCAAGC
1 ATATCGATTTTTGATTGCATGCAAGACCGCGTCTGGGACGTTGGCATTGTATATGTTTTCCAAGC
53518889 TATCCGAGTATCCTTATGTTTCCGAACGGTTCAACGGGCATTCTAAGGAAATGAATGAATAAGTG
66 TATCCGAGTATCCTTATGTTTCCGAACGGTTCAACGGGCATTCTAAGGAAATGAATGAATAAGTG
53518954 AATATATATCCCATTCAGGTA
131 AATATATATCCCATTCAGGTA
53518975 ATATCGATTTTTGATTGCATGCAAGACCGCGTCTGGGACGTTGGCATTGTATATGTTTTCCAAGC
1 ATATCGATTTTTGATTGCATGCAAGACCGCGTCTGGGACGTTGGCATTGTATATGTTTTCCAAGC
53519040 TATCCGAGTATCCTTATGTTTCCGAACGGTTCAACGGGCATTCTAAGGAAATGAATGAATAAGTG
66 TATCCGAGTATCCTTATGTTTCCGAACGGTTCAACGGGCATTCTAAGGAAATGAATGAATAAGTG
53519105 AATATATATCCCATTCAGGTA
131 AATATATATCCCATTCAGGTA
53519126 CGTTCGAATT
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 151 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (151 bp):
ATATCGATTTTTGATTGCATGCAAGACCGCGTCTGGGACGTTGGCATTGTATATGTTTTCCAAGC
TATCCGAGTATCCTTATGTTTCCGAACGGTTCAACGGGCATTCTAAGGAAATGAATGAATAAGTG
AATATATATCCCATTCAGGTA
Found at i:53527077 original size:39 final size:40
Alignment explanation
Indices: 53526977--53527161 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
53526967 TTGAATGATG
* * *
53526977 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
53527016 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
53527057 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
53527096 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
53527135 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
53527162 AACGAGTAAC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 36 0.30
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:53527117 original size:79 final size:78
Alignment explanation
Indices: 53526977--53527184 Score: 215
Period size: 79 Copynumber: 2.6 Consensus size: 78
53526967 TTGAATGATG
* * * ** *
53526977 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGTAACTATATCC-GGTTAAGATCCGAAGGCAATT
53527042 GTGCGAGATACTA-A
64 GTGCGAGATACTATA
* *
53527056 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTAACTATATCC-GGTTAAGAT-CCGAAGGCAA
*
53527119 TTGTGCGAGTTACTATA
62 TTGTGCGAGATACTATA
* * **
53527136 ACCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAACTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTAACTATATCCGGTTAA
53527185 ATTCTGAAGG
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 62 0.57
80 45 0.42
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTAACTATATCCGGTTAAGATCCGAAGGCAATTGT
GCGAGATACTATA
Found at i:53531089 original size:16 final size:16
Alignment explanation
Indices: 53531068--53531100 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
53531058 ACGCGGTTAC
53531068 TATGCTATCTAACCAG
1 TATGCTATCTAACCAG
53531084 TATGCTATCTAACCAG
1 TATGCTATCTAACCAG
53531100 T
1 T
53531101 TAGAACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (16 bp):
TATGCTATCTAACCAG
Found at i:53535205 original size:6 final size:6
Alignment explanation
Indices: 53535177--53535229 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
53535167 GTTTAAAGAC
* * *
53535177 TTTTTA TTTATTA TTTATTA TTTTTA TTTTTA TTTTCA CTTTTA TCTTTA
1 TTTTTA TTT-TTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
53535227 TTT
1 TTT
53535230 ATCTTTCTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
6 27 0.68
7 13 0.32
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:53548270 original size:49 final size:49
Alignment explanation
Indices: 53548198--53548385 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
53548188 TGAGGTCACG
*
53548198 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
53548247 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* * *
53548298 TGTGTAGTACTAAGTGCAGGCTATTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
53548347 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
53548386 GCTTCGGCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 75 0.65
50 2 0.02
51 38 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:53548366 original size:100 final size:100
Alignment explanation
Indices: 53548193--53548380 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
53548183 TATTGTGAGG
* *
53548193 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
53548258 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
53548293 TCACGTGTGTAGTACTAAGTGCAGGCTATTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
53548358 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
53548381 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:53549769 original size:48 final size:48
Alignment explanation
Indices: 53549713--53550076 Score: 480
Period size: 48 Copynumber: 7.6 Consensus size: 48
53549703 ATATCAATGT
* * * *
53549713 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-TACATTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTGGC
* * * * *
53549761 CGATGCCATGTTCCAAACATGGTCTTATACTGGATCTCAT-TACATTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTGGC
*
53549809 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* ** *
53549857 CGATGGCATGTTTCAAACATAGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * *
53549905 TGACGCCACGTCCCAAACATGGTATTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * *
53549953 CGATGCCATGTTCCAAACATGGTCTTTCATTGGCTCACATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
*
53550001 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
*
53550049 CGATGCCATGTCCCAGACATGGTCTTAC
1 CGATGCCATGTCCCAAACATGGTCTTAC
53550077 GCTAGCACAC
Statistics
Matches: 281, Mismatches: 34, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
48 280 1.00
49 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:53557412 original size:48 final size:48
Alignment explanation
Indices: 53557266--53557416 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 48
53557256 TGAATCGCTA
* * * * * * * *
53557266 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATATCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * * * * *
53557314 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCCTCTCAATACCG
1 ATGCCATATCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
* * *
53557362 ATGGCATATCCCAGACATGGTCTTACACTAGCGCACATATCAATGTCG
1 ATGCCATATCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
53557410 ATGCCAT
1 ATGCCAT
53557417 GTCCTGTAAC
Statistics
Matches: 82, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCG
Found at i:53560893 original size:144 final size:143
Alignment explanation
Indices: 53560626--53560937 Score: 459
Period size: 144 Copynumber: 2.2 Consensus size: 143
53560616 CGGGTTGTTA
* * *
53560626 CATGTCCCAAACATGGTCTTACACTGGCTCTCATTACATTCTGATGCCATGTTTCAAAGATGGTC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATTACATTCTGATGCCAAGTTCCAAACATGGTC
* * * *
53560691 TTACACTAGCTCTTATATCGTGGCTGATTCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
66 TTACACTAGCTCTCATATCGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA
53560756 TCGTGGCCGATGC
131 TCGTGGCCGATGC
*
53560769 CATGTCCCAAACATTGTCTTACACTGGCTCTCA-TAGCATGATC-GATGCCAAGTTCCAAACATG
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATTA-CAT--TCTGATGCCAAGTTCCAAACATG
* *
53560832 GTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAAACATGGT-TCTACATTGGCTCT
63 GTCTTACACTAGCTCTCATATCGTGGCCGATGCCATGTCCCAAACATGGTCT-TACACTGGCTCT
*
53560896 CATATCGTGGTCGATGC
127 CATATCGTGGCCGATGC
*
53560913 CATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAAACATGGTCTTACACT
53560938 AGCACACATA
Statistics
Matches: 152, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
142 2 0.01
143 36 0.24
144 112 0.74
145 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (143 bp):
CATGTCCCAAACATGGTCTTACACTGGCTCTCATTACATTCTGATGCCAAGTTCCAAACATGGTC
TTACACTAGCTCTCATATCGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATA
TCGTGGCCGATGC
Found at i:53560949 original size:48 final size:48
Alignment explanation
Indices: 53560626--53560937 Score: 396
Period size: 48 Copynumber: 6.5 Consensus size: 48
53560616 CGGGTTGTTA
* * *
53560626 CATGTCCCAAACATGGTCTTACACTGGCTCTCAT-TACAT-TCTGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTGGCCGATGC
** * * * * *
53560673 CATGTTTCAAAGATGGTCTTACACTAGCTCTTATATCGTGGCTGATTC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
*
53560721 CATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
* * * **
53560769 CATGTCCCAAACATTGTCTTACACTGGCTCTCATAGCATGATCGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
* *
53560817 CAAGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
* *
53560865 CATGTCCCAAACATGGT-TCTACATTGGCTCTCATATCGTGGTCGATGC
1 CATGTCCCAAACATGGTCT-TACACTGGCTCTCATATCGTGGCCGATGC
*
53560913 CATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAAACATGGTCTTACACT
53560938 AGCACACATA
Statistics
Matches: 228, Mismatches: 33, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
47 32 0.14
48 195 0.86
49 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (48 bp):
CATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGC
Found at i:53564333 original size:20 final size:20
Alignment explanation
Indices: 53564310--53564372 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
53564300 AAGTGCATTT
53564310 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * ** *
53564330 AGGGGCAC-GTATGTGTAATTC
1 AGGGGTACTG-AAGTACAA-AC
53564351 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
53564371 AG
1 AG
53564373 AGGCATGTAT
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
19 1 0.03
20 15 0.50
21 13 0.43
22 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.32, T:0.19
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:53564357 original size:41 final size:41
Alignment explanation
Indices: 53564302--53564392 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
53564292 GGGTACAAAA
* *
53564302 GTGC-ATTTAGGGGTACTGAAGTACAAACAGGGGCACGTAT
1 GTGCAATTCAGGGGTACTGAAGTACAAACAGAGGCACGTAT
* *
53564342 GTGTAATTCAGGGGTACTGAAGTACAAACAGAGGCATGTAT
1 GTGCAATTCAGGGGTACTGAAGTACAAACAGAGGCACGTAT
53564383 GTGCAATTCA
1 GTGCAATTCA
53564393 ACAATATTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 3 0.07
41 42 0.93
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (41 bp):
GTGCAATTCAGGGGTACTGAAGTACAAACAGAGGCACGTAT
Found at i:53573681 original size:42 final size:42
Alignment explanation
Indices: 53573560--53573706 Score: 147
Period size: 42 Copynumber: 3.4 Consensus size: 42
53573550 TTCTGATATG
* *
53573560 TGATTTCGTGTAAGACCATGTCTGAGAC-GTTGGCACCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGAGACAG-TGACATCGTATT
*
53573601 TGAGTTTTACGTGTAAGACCATGTCTGGGACA-TCGACATCGTATT
1 TGA--TTT-CGTGTAAGACCATGTCTGAGACAGT-GACATCGTATT
* *
53573646 TGATTTCGTGTAAGACCCTATCTGAGACAGTGACATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGAGACAGTGACATCG-TATT
* * *
53573689 TGAATACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
53573707 CGATTGGGAC
Statistics
Matches: 88, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 3 0.03
42 27 0.31
43 26 0.30
44 26 0.30
45 6 0.07
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGAGACAGTGACATCGTATT
Found at i:53579857 original size:27 final size:27
Alignment explanation
Indices: 53579827--53580164 Score: 359
Period size: 27 Copynumber: 12.6 Consensus size: 27
53579817 TAATAAAGAG
53579827 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
53579854 AAATTACCGAAATACCC-CTAATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* ** * *
53579881 AAACTACCAAAATA-CCTCCAGTTTCTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
53579908 AAATTACCGAAGTACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
53579935 AAATTACCGAAATACCCTC-ATTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* *
53579962 AAATTA-TCGAAATAACCTCGATTTGAA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
53579989 AAATTACTAAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
*
53580016 AAATTACTGAAATACCCTC-AATTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
53580042 GAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
53580069 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
53580096 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
53580123 AAATTACTGAAACA-CCTCCGATTTGTA
1 AAATTACTGAAATACCCT-CGATTTGTA
*
53580150 AAATTATTGAAATAC
1 AAATTACTGAAATAC
53580165 TCTTGTAGTT
Statistics
Matches: 263, Mismatches: 35, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
26 31 0.12
27 227 0.86
28 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:53580204 original size:81 final size:81
Alignment explanation
Indices: 53579930--53580207 Score: 239
Period size: 81 Copynumber: 3.4 Consensus size: 81
53579920 TACCCCTAGT
* * * * *
53579930 TTGTAAAATTACCGAAATACCCTC-ATTTTGTAAAATTA-TCGAAATAACCTCGATTTGAAAAAT
1 TTGTAAAATTACCAAAATACCATCGA-TTTGTAAAATTACT-GAAACACCCTCGATTTGTAAAAT
* * * *
53579993 TA-CTAAAATACCCTCGAT
64 TATC-GAAACACCTTCGAG
* ** * * * *
53580011 TTATAAAATTACTGAAATACCCTC-AATTGTAGAATTACTGAAATACCCTCGATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCATCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTA
*
53580075 TCGAAACACCTTCGAT
66 TCGAAACACCTTCGAG
* *
53580091 TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAACA-CCTCCGATTTGTAAAATT
1 TTGTAAAATTACCAAAATACCATCGATTTGTAAAATTACTGAAACACCCT-CGATTTGTAAAATT
* *
53580155 ATTGAAATACTCTT-GTAG
65 ATCGAAACAC-CTTCG-AG
*
53580173 TT-TAAAATTACCAAAATACCATTG-TTGTGTAAAAT
1 TTGTAAAATTACCAAAATACCATCGATT-TGTAAAAT
53580208 GATTGACGAA
Statistics
Matches: 170, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
80 71 0.42
81 93 0.55
82 6 0.04
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCATCGATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTA
TCGAAACACCTTCGAG
Found at i:53580709 original size:11 final size:11
Alignment explanation
Indices: 53580693--53580718 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
53580683 ATTGCATGTA
53580693 TGATATTATTG
1 TGATATTATTG
53580704 TGATATTATTG
1 TGATATTATTG
53580715 TGAT
1 TGAT
53580719 GTAGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:53581464 original size:370 final size:370
Alignment explanation
Indices: 53580779--53581518 Score: 1471
Period size: 370 Copynumber: 2.0 Consensus size: 370
53580769 GTTATGGGCT
53580779 GTGACCCAAATGATATTTAATAAATAGTAATTTATACATATTTTTACCCTATGCTTAACGCATTT
1 GTGACCCAAATGATATTTAATAAATAGTAATTTATACATATTTTTACCCTATGCTTAACGCATTT
53580844 TATGGATGATTTCCTATTAGAATTGGTGAATTCGATGCTCTTAATGCTTTAATTTCATGTTTTAT
66 TATGGATGATTTCCTATTAGAATTGGTGAATTCGATGCTCTTAATGCTTTAATTTCATGTTTTAT
53580909 ACTTAGGAGAGCATAGGAGAGTAAAAAGATGAGAAACGGGCCAAAAACGGAGAAAATAGGCCAAA
131 ACTTAGGAGAGCATAGGAGAGTAAAAAGATGAGAAACGGGCCAAAAACGGAGAAAATAGGCCAAA
53580974 GTACGAAATCAACATGGCCTAAACCTCCTCACACGGGCAAACCACACGGGCGTGTCAATTTGGCA
196 GTACGAAATCAACATGGCCTAAACCTCCTCACACGGGCAAACCACACGGGCGTGTCAATTTGGCA
53581039 GTTTCGAAGCACGATTCACACGGGCGTGTCACACTGGCGTGTCTCTGCCGAGCCCAAGTTGAGTC
261 GTTTCGAAGCACGATTCACACGGGCGTGTCACACTGGCGTGTCTCTGCCGAGCCCAAGTTGAGTC
53581104 CAATTCGGAAAAGGCTAATTTTGAGGGATCTTAGGCATTCCAAAG
326 CAATTCGGAAAAGGCTAATTTTGAGGGATCTTAGGCATTCCAAAG
53581149 GTGACCCAAATGATATTTAATAAATAGTAATTTATACATATTTTTACCCTATGCTTAACGCATTT
1 GTGACCCAAATGATATTTAATAAATAGTAATTTATACATATTTTTACCCTATGCTTAACGCATTT
53581214 TATGGATGATTTCCTATTAGAATTGGTGAATTCGATGCTCTTAATGCTTTAATTTCATGTTTTAT
66 TATGGATGATTTCCTATTAGAATTGGTGAATTCGATGCTCTTAATGCTTTAATTTCATGTTTTAT
53581279 ACTTAGGAGAGCATAGGAGAGTAAAAAGATGAGAAACGGGCCAAAAACGGAGAAAATAGGCCAAA
131 ACTTAGGAGAGCATAGGAGAGTAAAAAGATGAGAAACGGGCCAAAAACGGAGAAAATAGGCCAAA
53581344 GTACGAAATCAACATGGCCTAAACCTCCTCACACGGGCAAACCACACGGGCGTGTCAATTTGGCA
196 GTACGAAATCAACATGGCCTAAACCTCCTCACACGGGCAAACCACACGGGCGTGTCAATTTGGCA
*
53581409 GTTTCGAAGCACGATTCACACGGGCGTGTCACACTGGCGTGTCTCTGCTGAGCCCAAGTTGAGTC
261 GTTTCGAAGCACGATTCACACGGGCGTGTCACACTGGCGTGTCTCTGCCGAGCCCAAGTTGAGTC
53581474 CAATTCGGAAAAGGCTAATTTTGAGGGATCTTAGGCATTCCAAAG
326 CAATTCGGAAAAGGCTAATTTTGAGGGATCTTAGGCATTCCAAAG
53581519 CTATAAATAC
Statistics
Matches: 369, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
370 369 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (370 bp):
GTGACCCAAATGATATTTAATAAATAGTAATTTATACATATTTTTACCCTATGCTTAACGCATTT
TATGGATGATTTCCTATTAGAATTGGTGAATTCGATGCTCTTAATGCTTTAATTTCATGTTTTAT
ACTTAGGAGAGCATAGGAGAGTAAAAAGATGAGAAACGGGCCAAAAACGGAGAAAATAGGCCAAA
GTACGAAATCAACATGGCCTAAACCTCCTCACACGGGCAAACCACACGGGCGTGTCAATTTGGCA
GTTTCGAAGCACGATTCACACGGGCGTGTCACACTGGCGTGTCTCTGCCGAGCCCAAGTTGAGTC
CAATTCGGAAAAGGCTAATTTTGAGGGATCTTAGGCATTCCAAAG
Found at i:53582573 original size:3 final size:3
Alignment explanation
Indices: 53582565--53582594 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
53582555 TTTAATTTAA
53582565 TAT TAT TAT TAT TAT TAT TAT TACT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA
53582595 ATTTACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:53588770 original size:12 final size:12
Alignment explanation
Indices: 53588755--53588783 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
53588745 ACTTGTTCTT
53588755 TAAAAAATAAAA
1 TAAAAAATAAAA
53588767 TAAAAAATAAAA
1 TAAAAAATAAAA
53588779 TAAAA
1 TAAAA
53588784 CGTGTATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:53591837 original size:20 final size:21
Alignment explanation
Indices: 53591782--53591840 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
53591772 ATTCGGCATT
53591782 TGTATATGTATAAG-TATATAA
1 TGTATATG-ATAAGATATATAA
* * *
53591803 TGT-TTTGATATGATAT-TTA
1 TGTATATGATAAGATATATAA
53591822 TGTATATGATAAGATATAT
1 TGTATATGATAAGATATAT
53591841 TTGTAATGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 9 0.30
20 17 0.57
21 4 0.13
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.47
Consensus pattern (21 bp):
TGTATATGATAAGATATATAA
Found at i:53591845 original size:20 final size:20
Alignment explanation
Indices: 53591779--53591845 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
53591769 ATGATTCGGC
53591779 ATTTGTATATGTATAAG-TAT
1 ATTTGTATATG-ATAAGATAT
* * *
53591799 ATAATGT-TTTGATATGATAT
1 AT-TTGTATATGATAAGATAT
53591819 -TTATGTATATGATAAGATAT
1 ATT-TGTATATGATAAGATAT
53591839 ATTTGTA
1 ATTTGTA
53591846 ATGTATTTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 8 0.22
20 23 0.64
21 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATTTGTATATGATAAGATAT
Found at i:53603405 original size:40 final size:40
Alignment explanation
Indices: 53603316--53603619 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
53603306 TTGAATGATG
* * *
53603316 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
53603355 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53603395 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
53603434 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
53603474 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
53603514 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53603554 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
53603595 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
53603620 AACGAGGAGC
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 53 0.22
40 183 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:53606992 original size:45 final size:43
Alignment explanation
Indices: 53606897--53607054 Score: 174
Period size: 45 Copynumber: 3.6 Consensus size: 43
53606887 GATGTCCCAT
* * *
53606897 ACATGGTCTTACTCGTAAC-CATATATCGATGCCAACGTCCCAA
1 ACATGGTCTTACACGAAACACATATATCGATGCCAACGT-CCAG
* * * *
53606940 ACGTGGTCTTACACGAAAACACATATATCAATACCAACATCTCAG
1 ACATGGTCTTACACG-AAACACATATATCGATGCCAACGTC-CAG
* *
53606985 ACATGGTCTTACACGAAAAGACATATAGCGATGCCAACGTCCTAG
1 ACATGGTCTTACACG-AAACACATATATCGATGCCAACGTCC-AG
*
53607030 ACGTGGTCTTACACGAAACACATAT
1 ACATGGTCTTACACGAAACACATAT
53607055 CAGAATCCCA
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
43 13 0.14
44 14 0.15
45 69 0.72
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
ACATGGTCTTACACGAAACACATATATCGATGCCAACGTCCAG
Found at i:53614895 original size:42 final size:43
Alignment explanation
Indices: 53614779--53614920 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
53614769 ACATAGGATT
* * ** * *
53614779 TCGATATGTGATTTCGTGTAAGACCACATCTGGGA-AGTTGGTA
1 TCGATATTTGATTTTGTGTAAGACCATGTTTGGGACAG-TGGCA
* *
53614822 TCGAT-TTGAGATTTACGTGTAAGACCATGTTTGGGACA-TCGGCA
1 TCGATATT-TGATTT-TGTGTAAGACCATGTTTGGGACAGT-GGCA
* *
53614866 T-TATATTTGATTTTGTGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGATATTTGATTTTGTGTAAGACCATGTTTGGGACAGTGGCA
53614908 TCGATATTTGATT
1 TCGATATTTGATT
53614921 ACATGTAAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
42 27 0.33
43 29 0.36
44 24 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (43 bp):
TCGATATTTGATTTTGTGTAAGACCATGTTTGGGACAGTGGCA
Found at i:53614916 original size:43 final size:42
Alignment explanation
Indices: 53614838--53614920 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
53614828 TGAGATTTAC
*
53614838 GTGTAAGACCATGTTTGGGACATCGGCATTATATTTGATTTT
1 GTGTAAGACCATGTTTGGGACATCGGCATGATATTTGATTTT
*
53614880 GTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGATT
1 GTGTAAGACCATGTTTGGGACA-TCGGCAT-GATATTTGATT
53614921 ACATGTAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 26 0.70
43 11 0.30
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (42 bp):
GTGTAAGACCATGTTTGGGACATCGGCATGATATTTGATTTT
Found at i:53614929 original size:43 final size:42
Alignment explanation
Indices: 53614834--53614951 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
53614824 GATTTGAGAT
*
53614834 TTACGTGTAAGACCATGTTTGGGACATCGGCATTATATTTGA
1 TTACGTGTAAGACCATGTTTGGGACATCGGCATGATATTTGA
** *
53614876 TTTTGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGA
1 TTACGTGTAAGACCATGTTTGGGACA-TCGGCAT-GATATTTGA
* * * * *
53614919 TTACATGTAAGATCACGTCTGGGACATTGGCAT
1 TTACGTGTAAGACCATGTTTGGGACATCGGCAT
53614952 TGTACTAGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTTTGGGACATCGGCATGATATTTGA
Found at i:53623153 original size:45 final size:45
Alignment explanation
Indices: 53623099--53623348 Score: 387
Period size: 45 Copynumber: 5.6 Consensus size: 45
53623089 CGGCATTTCG
*
53623099 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAA
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTGCATTATAA
* * *
53623144 CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTGCATTATAA
*
53623189 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAA
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTGCATTATAA
* *
53623234 CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCAGCATTA-AA
1 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTGCATTATAA
*
53623278 GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACC-GACATTATAG
1 -CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTG-CATTATAA
*
53623324 TCTGCTAGGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCAAAGGCCCGAATA
53623349 GTACTGTACA
Statistics
Matches: 188, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
44 3 0.02
45 184 0.98
46 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCTGCATTATAA
Found at i:53623203 original size:90 final size:90
Alignment explanation
Indices: 53623085--53623348 Score: 442
Period size: 90 Copynumber: 2.9 Consensus size: 90
53623075 CCGAATTCAT
*
53623085 TCACCGGCATT-TCGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGC
53623149 TAGGCTCAAAAGCCCGAATAATATC
66 TAGGCTCAAAAGCCCGAATAATATC
53623174 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGC
53623239 TAGGCTCAAAAGCCCGAATAATATC
66 TAGGCTCAAAAGCCCGAATAATATC
* * * **
53623264 TCACCAGCATTAAAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACC-GACATTATAGTCTG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTG-CATTATAACCTG
*
53623328 CTAGGCTCAAAGGCCCGAATA
65 CTAGGCTCAAAAGCCCGAATA
53623349 GTACTGTACA
Statistics
Matches: 166, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
89 12 0.07
90 154 0.93
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (90 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGC
TAGGCTCAAAAGCCCGAATAATATC
Found at i:53623341 original size:135 final size:135
Alignment explanation
Indices: 53623099--53623351 Score: 436
Period size: 135 Copynumber: 1.9 Consensus size: 135
53623089 CGGCATTTCG
* * *
53623099 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCATTATAACCTGCTAGGCTCAAAAGCCC
1 CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCAGCATTATAACCTGCTAGGCTCAAAAGCCC
*
53623164 GAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCAT
66 GAATAATATCTCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCAT
53623229 TATAA
131 TATAA
*
53623234 CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCAGCATTA-AAGCCTGCTAGGCTCAAAGGCC
1 CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCAGCATTATAA-CCTGCTAGGCTCAAAAGCC
*
53623298 CGAATAATATCTCACCGACATTATAGTCTGCTAGGCTCAAAGGCCCGAATAGTA
65 CGAATAATATCTCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
53623352 CTGTACAATA
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
134 2 0.02
135 109 0.98
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (135 bp):
CCTGCTAGGCTCAAAAGCCCGAATAATATCTCACCAGCATTATAACCTGCTAGGCTCAAAAGCCC
GAATAATATCTCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCTGCAT
TATAA
Found at i:53630078 original size:32 final size:32
Alignment explanation
Indices: 53630042--53630106 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
53630032 TGGTGATTGA
*
53630042 GCTATAACTAGCGTACACAATAGATTCTAAGT
1 GCTATAACTAGCGTACACAATAGAGTCTAAGT
53630074 GCTATAACTAGCGTACACAATAGAGTCTAAGT
1 GCTATAACTAGCGTACACAATAGAGTCTAAGT
53630106 G
1 G
53630107 GTTACTAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (32 bp):
GCTATAACTAGCGTACACAATAGAGTCTAAGT
Found at i:53634652 original size:79 final size:78
Alignment explanation
Indices: 53634550--53634772 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
53634540 GCTCCTCGTT
* *
53634550 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
53634615 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
53634630 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
53634693 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
53634708 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
53634771 GA
63 GA
53634773 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:53634667 original size:39 final size:40
Alignment explanation
Indices: 53634550--53634772 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
53634540 GCTCCTCGTT
* *
53634550 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
53634590 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
53634630 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
53634669 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
53634708 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
53634749 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
53634773 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:53642676 original size:79 final size:82
Alignment explanation
Indices: 53642565--53642749 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
53642555 GCTACTCGTT
* *
53642565 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
53642628 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
53642645 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
53642708 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
53642725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
53642750 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:53642749 original size:40 final size:40
Alignment explanation
Indices: 53642546--53642749 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
53642536 CGGAATTTAA
** *
53642546 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
53642586 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
53642626 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
53642665 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
53642705 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
53642745 CCGGA
1 CCGGA
53642750 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:53645257 original size:43 final size:43
Alignment explanation
Indices: 53645209--53645360 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
53645199 ACCGATATGA
* *
53645209 GATTACATGTAAGACCATGTCTGGGACATTGGTAATG-TACGGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAATGTTA-GGT
* * * *
53645252 GATTACGTGTAAGACAATGTCTGGGTCATTGGCATTGTTATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAATGTTAGGT
* * * * * *
53645295 GATTTCGTGTAAGACCATGTCTGGGACATTAGCATTGATATGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAATGTTAGGT
* * *
53645338 GATAACATGTAAGACCATATCTG
1 GATTACGTGTAAGACCATGTCTG
53645361 AGATATGGCA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
43 90 0.98
44 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCAATGTTAGGT
Found at i:53645844 original size:33 final size:33
Alignment explanation
Indices: 53645805--53645882 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
53645795 TAAGTTGCCG
* * *
53645805 AATAAGACCATAGTTGGGCTATGGTAATCGAAT
1 AATAAGACCATAGCTGGACTATGGCAATCGAAT
*
53645838 AATAAGACCATAGCTGGACTATGGCAATCGACT
1 AATAAGACCATAGCTGGACTATGGCAATCGAAT
53645871 AA-AATGACCATA
1 AATAA-GACCATA
53645883 ACCAGGTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.05
33 38 0.95
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (33 bp):
AATAAGACCATAGCTGGACTATGGCAATCGAAT
Found at i:53650792 original size:93 final size:93
Alignment explanation
Indices: 53650681--53650852 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
53650671 GCCCATAAGT
* * * *
53650681 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGGATCCATAAGTGAACCCGGACTCAACTGAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
53650746 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
* *
53650774 GAACTCAGG-CTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTC-GGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCA
53650838 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
53650853 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACCCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:53650848 original size:46 final size:46
Alignment explanation
Indices: 53650673--53650848 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
53650663 TGTAACCCGC
* * * *
53650673 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
53650719 CCATAAGTGAACCCGGACTCAACTGAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
53650765 ACATCTCTCGAACTCAGG-CTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTC-GGACTCAACTCAACGAGTTCGGACATTCGCAT
53650812 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
53650849 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 64 0.62
47 28 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:53652780 original size:15 final size:15
Alignment explanation
Indices: 53652754--53652809 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
53652744 CAAGGAAACC
53652754 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
53652769 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
53652784 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
53652799 GAATAAAGAAA
1 GAATAAAGAAA
53652810 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:53658310 original size:929 final size:929
Alignment explanation
Indices: 53656514--53658371 Score: 3716
Period size: 929 Copynumber: 2.0 Consensus size: 929
53656504 ATATTCTATC
53656514 ATAAAACACCAAAATACACAAATTTCACCTATGGATATTTTTCCAAATATAAAACATAGGTTAAA
1 ATAAAACACCAAAATACACAAATTTCACCTATGGATATTTTTCCAAATATAAAACATAGGTTAAA
53656579 TTATTGCTAAAATAAGCTAAATCAAGTTATCGGGACTCAAAAAATGTAAAAATCATTAAAAACGA
66 TTATTGCTAAAATAAGCTAAATCAAGTTATCGGGACTCAAAAAATGTAAAAATCATTAAAAACGA
53656644 GGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGACATAGTTTCTCCTTGCT
131 GGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGACATAGTTTCTCCTTGCT
53656709 ATATTCGGCCATGGGGTTGAAGATGAGCAAAATTAGCTTTTAATTTTGTATTTTAATTCATTTTA
196 ATATTCGGCCATGGGGTTGAAGATGAGCAAAATTAGCTTTTAATTTTGTATTTTAATTCATTTTA
53656774 CCCCTAAATGACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTT
261 CCCCTAAATGACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTT
53656839 GTCCATAGACTTATAAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAACAAT
326 GTCCATAGACTTATAAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAACAAT
53656904 TTCATGCTTGAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTCGTCCCTAATTTCAATT
391 TTCATGCTTGAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTCGTCCCTAATTTCAATT
53656969 TAAGCACTTTATGCATACAATTTCTTCACGAAATTTTCACACAATCATGCAATCATATCATAGAC
456 TAAGCACTTTATGCATACAATTTCTTCACGAAATTTTCACACAATCATGCAATCATATCATAGAC
53657034 CTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGAAACCACTATTTCGA
521 CTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGAAACCACTATTTCGA
53657099 CTAGGCCCAAAATCAGGATATTACAGTAGCTACGGTGGATAATGTGGAATGTAATACGCCGGCTC
586 CTAGGCCCAAAATCAGGATATTACAGTAGCTACGGTGGATAATGTGGAATGTAATACGCCGGCTC
53657164 CCGCTGAAGAGACCGCGCTAGTTAATAGTGGACCCATGACGATGAGTCATGGCGTGGGCTAGAGA
651 CCGCTGAAGAGACCGCGCTAGTTAATAGTGGACCCATGACGATGAGTCATGGCGTGGGCTAGAGA
53657229 AGCTTACCTCCACATGATGGATGCCTGGTACTCAGAGTTTATTCGTGTGAATCCGAATACTCCAC
716 AGCTTACCTCCACATGATGGATGCCTGGTACTCAGAGTTTATTCGTGTGAATCCGAATACTCCAC
53657294 CTCCCCCACCTCCTCCAATTCCTCAACCCATCCATATAGCTCCTCAAGGAGTAGAGATGGCTAGG
781 CTCCCCCACCTCCTCCAATTCCTCAACCCATCCATATAGCTCCTCAAGGAGTAGAGATGGCTAGG
53657359 AGAGAGAAACCTTTAGTGGATAGAATTAGAAAGCAAGGGGCTGAGGAATTTCAGGTGAATATTGA
846 AGAGAGAAACCTTTAGTGGATAGAATTAGAAAGCAAGGGGCTGAGGAATTTCAGGTGAATATTGA
53657424 TGATGACCCGGAGAGAGCG
911 TGATGACCCGGAGAGAGCG
53657443 ATAAAACACCAAAATACACAAATTTCACCTATGGATATTTTTCCAAATATAAAACATAGGTTAAA
1 ATAAAACACCAAAATACACAAATTTCACCTATGGATATTTTTCCAAATATAAAACATAGGTTAAA
53657508 TTATTGCTAAAATAAGCTAAATCAAGTTATCGGGACTCAAAAAATGTAAAAATCATTAAAAACGA
66 TTATTGCTAAAATAAGCTAAATCAAGTTATCGGGACTCAAAAAATGTAAAAATCATTAAAAACGA
53657573 GGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGACATAGTTTCTCCTTGCT
131 GGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGACATAGTTTCTCCTTGCT
53657638 ATATTCGGCCATGGGGTTGAAGATGAGCAAAATTAGCTTTTAATTTTGTATTTTAATTCATTTTA
196 ATATTCGGCCATGGGGTTGAAGATGAGCAAAATTAGCTTTTAATTTTGTATTTTAATTCATTTTA
53657703 CCCCTAAATGACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTT
261 CCCCTAAATGACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTT
53657768 GTCCATAGACTTATAAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAACAAT
326 GTCCATAGACTTATAAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAACAAT
53657833 TTCATGCTTGAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTCGTCCCTAATTTCAATT
391 TTCATGCTTGAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTCGTCCCTAATTTCAATT
53657898 TAAGCACTTTATGCATACAATTTCTTCACGAAATTTTCACACAATCATGCAATCATATCATAGAC
456 TAAGCACTTTATGCATACAATTTCTTCACGAAATTTTCACACAATCATGCAATCATATCATAGAC
53657963 CTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGAAACCACTATTTCGA
521 CTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGAAACCACTATTTCGA
53658028 CTAGGCCCAAAATCAGGATATTACAGTAGCTACGGTGGATAATGTGGAATGTAATACGCCGGCTC
586 CTAGGCCCAAAATCAGGATATTACAGTAGCTACGGTGGATAATGTGGAATGTAATACGCCGGCTC
53658093 CCGCTGAAGAGACCGCGCTAGTTAATAGTGGACCCATGACGATGAGTCATGGCGTGGGCTAGAGA
651 CCGCTGAAGAGACCGCGCTAGTTAATAGTGGACCCATGACGATGAGTCATGGCGTGGGCTAGAGA
53658158 AGCTTACCTCCACATGATGGATGCCTGGTACTCAGAGTTTATTCGTGTGAATCCGAATACTCCAC
716 AGCTTACCTCCACATGATGGATGCCTGGTACTCAGAGTTTATTCGTGTGAATCCGAATACTCCAC
53658223 CTCCCCCACCTCCTCCAATTCCTCAACCCATCCATATAGCTCCTCAAGGAGTAGAGATGGCTAGG
781 CTCCCCCACCTCCTCCAATTCCTCAACCCATCCATATAGCTCCTCAAGGAGTAGAGATGGCTAGG
53658288 AGAGAGAAACCTTTAGTGGATAGAATTAGAAAGCAAGGGGCTGAGGAATTTCAGGTGAATATTGA
846 AGAGAGAAACCTTTAGTGGATAGAATTAGAAAGCAAGGGGCTGAGGAATTTCAGGTGAATATTGA
53658353 TGATGACCCGGAGAGAGCG
911 TGATGACCCGGAGAGAGCG
53658372 GAGTTTTGGC
Statistics
Matches: 929, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
929 929 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (929 bp):
ATAAAACACCAAAATACACAAATTTCACCTATGGATATTTTTCCAAATATAAAACATAGGTTAAA
TTATTGCTAAAATAAGCTAAATCAAGTTATCGGGACTCAAAAAATGTAAAAATCATTAAAAACGA
GGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGACATAGTTTCTCCTTGCT
ATATTCGGCCATGGGGTTGAAGATGAGCAAAATTAGCTTTTAATTTTGTATTTTAATTCATTTTA
CCCCTAAATGACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCCAATTTTT
GTCCATAGACTTATAAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAACAAT
TTCATGCTTGAAACTTCTAGAATGCAAGTTTTGCAAATTATTCGATTTCGTCCCTAATTTCAATT
TAAGCACTTTATGCATACAATTTCTTCACGAAATTTTCACACAATCATGCAATCATATCATAGAC
CTTAAAATAATCATAAAATAATTATTTCTATCTCAGATTTTGTGGTCACGAAACCACTATTTCGA
CTAGGCCCAAAATCAGGATATTACAGTAGCTACGGTGGATAATGTGGAATGTAATACGCCGGCTC
CCGCTGAAGAGACCGCGCTAGTTAATAGTGGACCCATGACGATGAGTCATGGCGTGGGCTAGAGA
AGCTTACCTCCACATGATGGATGCCTGGTACTCAGAGTTTATTCGTGTGAATCCGAATACTCCAC
CTCCCCCACCTCCTCCAATTCCTCAACCCATCCATATAGCTCCTCAAGGAGTAGAGATGGCTAGG
AGAGAGAAACCTTTAGTGGATAGAATTAGAAAGCAAGGGGCTGAGGAATTTCAGGTGAATATTGA
TGATGACCCGGAGAGAGCG
Found at i:53659409 original size:21 final size:21
Alignment explanation
Indices: 53659368--53659409 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
53659358 AAGAAAGGAA
* **
53659368 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
53659389 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
53659410 GGTTATTACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:53660942 original size:56 final size:56
Alignment explanation
Indices: 53660851--53660973 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
53660841 GAGATTGGCG
* * *
53660851 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
53660908 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
53660963 CTGAGTGTGCG
1 CTAAGTGTGCG
53660974 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:53660960 original size:27 final size:28
Alignment explanation
Indices: 53660851--53660973 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
53660841 GAGATTGGCG
* * * *
53660851 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
53660880 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
53660908 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
53660936 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
53660963 CTGAGTGTGCG
1 CTAAGTGTGCG
53660974 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:53660984 original size:27 final size:27
Alignment explanation
Indices: 53660876--53660986 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
53660866 TAAATTGTAC
* * *
53660876 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
53660904 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
53660932 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
53660959 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
53660986 A
1 A
53660987 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:53665719 original size:21 final size:20
Alignment explanation
Indices: 53665681--53665719 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
53665671 GTAAATGATG
*
53665681 TTTTGGCATGATTATAATTC
1 TTTTGGAATGATTATAATTC
*
53665701 TTTTGGAATTGATTGTAAT
1 TTTTGGAA-TGATTATAAT
53665720 ATGGTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (20 bp):
TTTTGGAATGATTATAATTC
Found at i:53668321 original size:30 final size:30
Alignment explanation
Indices: 53668285--53668346 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
53668275 TCTTGAAGTC
53668285 CTTAGAATTTGACTAGGACAGATTTTAACA
1 CTTAGAATTTGACTAGGACAGATTTTAACA
53668315 CTTAGAATTTGACTAGGACAGATTTTAACA
1 CTTAGAATTTGACTAGGACAGATTTTAACA
53668345 CT
1 CT
53668347 CCTAACCCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (30 bp):
CTTAGAATTTGACTAGGACAGATTTTAACA
Found at i:53672277 original size:42 final size:42
Alignment explanation
Indices: 53672175--53672281 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 42
53672165 AGCTCGTACA
* *
53672175 ATGTCCTAGACGTGGTCTTACATATAATCAAATATCGATGCC
1 ATGTCCCAGACATGGTCTTACATATAATCAAATATCGATGCC
* *
53672217 ACTGTCCCAAACAGGGTCTTCAACA-A-AATCAAATA-CGATGCC
1 A-TGTCCCAGACATGGTCTT--ACATATAATCAAATATCGATGCC
53672259 GATGTCCCAGACATGGTCTTACA
1 -ATGTCCCAGACATGGTCTTACA
53672282 CGTAAATCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
40 3 0.05
42 24 0.44
43 24 0.44
44 1 0.02
45 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGTCCCAGACATGGTCTTACATATAATCAAATATCGATGCC
Found at i:53672289 original size:43 final size:41
Alignment explanation
Indices: 53672175--53672303 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 41
53672165 AGCTCGTACA
* *
53672175 ATGTCCTAGACGTGGTCTTACA-TATAATCAAATATCGATGCC
1 ATGTCCCAGACATGGTCTTACACTA-AATCAAATA-CGATGCC
* * *
53672217 ACTGTCCCAAACAGGGTCTT-CAACAAAATCAAATACGATGCC
1 A-TGTCCCAGACATGGTCTTAC-ACTAAATCAAATACGATGCC
53672259 GATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCC
1 -ATGTCCCAGACATGGTCTTACAC-TAAA--TCAAATACGATGCC
53672303 A
1 A
53672304 ACATCCTAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 15
0.76 0.09 0.16
Matches are distributed among these distances:
42 27 0.38
43 30 0.42
44 8 0.11
45 6 0.08
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (41 bp):
ATGTCCCAGACATGGTCTTACACTAAATCAAATACGATGCC
Found at i:53673698 original size:21 final size:21
Alignment explanation
Indices: 53673672--53673725 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
53673662 CACAAGGGGT
*
53673672 ATGTCGCAACATAGGGGGATC
1 ATGTCGCAACATAGGAGGATC
*
53673693 ATGTCGAAACATAGGAGGATC
1 ATGTCGCAACATAGGAGGATC
*
53673714 ATGTCGCGACAT
1 ATGTCGCAACAT
53673726 TAAGGGCAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.20
Consensus pattern (21 bp):
ATGTCGCAACATAGGAGGATC
Found at i:53679563 original size:24 final size:24
Alignment explanation
Indices: 53679531--53679581 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
53679521 GAAAAATCAC
*
53679531 TTAGTAAAAGTTGTTCACTATCCT
1 TTAGTAAAAGTTGTTCACCATCCT
53679555 TTAGTAAAAGTTGTTCACCATCCT
1 TTAGTAAAAGTTGTTCACCATCCT
53679579 TTA
1 TTA
53679582 AACTCTCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (24 bp):
TTAGTAAAAGTTGTTCACCATCCT
Found at i:53686899 original size:63 final size:62
Alignment explanation
Indices: 53686828--53687001 Score: 208
Period size: 62 Copynumber: 2.8 Consensus size: 62
53686818 TGGCAAACCA
* *
53686828 TGTAACTCATTGTTTATGAATTAGAGGCACACGAACTAGGGACACGGGCGTGTGTCCAGGCCG
1 TGTAACTCATTGTTT-TGATTTAGAGGCACACGAGCTAGGGACACGGGCGTGTGTCCAGGCCG
* * * * *
53686891 TGTAACTCACTG-TTTGTATTTTG-GGTCACACGAGCTAGGGACACGAGCGTGTGTCTAGGTCG
1 TGTAACTCATTGTTTTG-ATTTAGAGG-CACACGAGCTAGGGACACGGGCGTGTGTCCAGGCCG
* * *
53686953 TGTAACTCATTGTTTTGGATTTAGAGCCACACGGGCCAGGGACACGGGC
1 TGTAACTCATTGTTTT-GATTTAGAGGCACACGAGCTAGGGACACGGGC
53687002 CTATGTCTAA
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
61 4 0.04
62 49 0.53
63 38 0.41
64 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (62 bp):
TGTAACTCATTGTTTTGATTTAGAGGCACACGAGCTAGGGACACGGGCGTGTGTCCAGGCCG
Found at i:53687009 original size:63 final size:63
Alignment explanation
Indices: 53686828--53687018 Score: 215
Period size: 63 Copynumber: 3.0 Consensus size: 63
53686818 TGGCAAACCA
* * * * *
53686828 TGTAACTCATTGTTTAT-GAATTAGAGGCACACGAACTAGGGACACGGGCGTGTGTCCAGGCCG
1 TGTAACTCATTGTTT-TGGATTTAGAGCCACACGAGCTAGGGACACGGGCGTGTGTCTAGGTCG
* * * * * *
53686891 TGTAACTCACTG-TTTGTATTTTGGGTCACACGAGCTAGGGACACGAGCGTGTGTCTAGGTCG
1 TGTAACTCATTGTTTTGGATTTAGAGCCACACGAGCTAGGGACACGGGCGTGTGTCTAGGTCG
* * * * *
53686953 TGTAACTCATTGTTTTGGATTTAGAGCCACACGGGCCAGGGACACGGGCCTATGTCTAAGTCG
1 TGTAACTCATTGTTTTGGATTTAGAGCCACACGAGCTAGGGACACGGGCGTGTGTCTAGGTCG
53687016 TGT
1 TGT
53687019 GAGGGTTTGT
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
61 1 0.01
62 50 0.48
63 54 0.51
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (63 bp):
TGTAACTCATTGTTTTGGATTTAGAGCCACACGAGCTAGGGACACGGGCGTGTGTCTAGGTCG
Found at i:53687694 original size:22 final size:22
Alignment explanation
Indices: 53687669--53687722 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
53687659 GAATCTAATA
53687669 TGTTCTGCATTTGTATATGATT-
1 TGTTCTGCATTTGTATATG-TTC
53687691 TGTTCTGCATTTGTATATGTTC
1 TGTTCTGCATTTGTATATGTTC
*
53687713 TATTCTGCAT
1 TGTTCTGCAT
53687723 CTATATCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.54
Consensus pattern (22 bp):
TGTTCTGCATTTGTATATGTTC
Found at i:53694875 original size:17 final size:18
Alignment explanation
Indices: 53694853--53694896 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
53694843 TCTTGATATT
53694853 ATCATATTTA-AAATAAA
1 ATCATATTTATAAATAAA
*
53694870 ATCATATTTATATATAAA
1 ATCATATTTATAAATAAA
*
53694888 ATTATATTT
1 ATCATATTT
53694897 TTTAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
ATCATATTTATAAATAAA
Found at i:53697769 original size:14 final size:14
Alignment explanation
Indices: 53697750--53697788 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
53697740 TATGTCATAA
53697750 TTTAAAATAAAAAT
1 TTTAAAATAAAAAT
*
53697764 TTTAAAAAATAAATAT
1 TTT--AAAATAAAAAT
53697780 TTTAAAATA
1 TTTAAAATA
53697789 TTAATTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTTAAAATAAAAAT
Found at i:53697786 original size:15 final size:16
Alignment explanation
Indices: 53697753--53697786 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
53697743 GTCATAATTT
53697753 AAAATAAAAATTTTAA
1 AAAATAAAAATTTTAA
*
53697769 AAAATAAATATTTTAA
1 AAAATAAAAATTTTAA
53697785 AA
1 AA
53697787 TATTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAATAAAAATTTTAA
Found at i:53698301 original size:6 final size:6
Alignment explanation
Indices: 53698290--53698321 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
53698280 AATAAAAAAA
*
53698290 TATTTT TATTTT CATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TATTTT TA
53698322 GCAGGAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:53698529 original size:36 final size:36
Alignment explanation
Indices: 53698488--53698562 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
53698478 AAATCATCTC
53698488 TTTTACAAAATAATAAACACTATTTTAAAAGTATTT
1 TTTTACAAAATAATAAACACTATTTTAAAAGTATTT
53698524 TTTTACAAAATAATAAACACTATTTTAAAAGTATTT
1 TTTTACAAAATAATAAACACTATTTTAAAAGTATTT
53698560 TTT
1 TTT
53698563 CATTTTAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (36 bp):
TTTTACAAAATAATAAACACTATTTTAAAAGTATTT
Found at i:53698708 original size:5 final size:5
Alignment explanation
Indices: 53698698--53698727 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
53698688 GCAATTGAGA
53698698 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
53698728 AATAAAGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:53702005 original size:27 final size:27
Alignment explanation
Indices: 53701975--53702152 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
53701965 ATATTGAGTC
* * * *
53701975 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
53702002 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
53702029 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
53702057 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
53702084 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
53702111 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
53702138 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
53702153 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:53702114 original size:82 final size:81
Alignment explanation
Indices: 53701996--53702151 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
53701986 TGCTATATAA
* *
53701996 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
53702061 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
53702078 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
53702142 CACTTAGTGC
65 CACTTAGTGC
53702152 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:53705804 original size:5 final size:5
Alignment explanation
Indices: 53705768--53705797 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
53705758 CAATTTGAAA
53705768 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
53705798 AATAAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:53706802 original size:25 final size:25
Alignment explanation
Indices: 53706755--53706802 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53706745 TAGGTTAATC
* *
53706755 AGAGTTTAAGTGGGAAAATAAAGAT
1 AGAGTTTAACTGGGAAAAGAAAGAT
*
53706780 AGAGTTTAACTGGGAGAAGAAAG
1 AGAGTTTAACTGGGAAAAGAAAG
53706803 CTGAAAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.46, C:0.02, G:0.31, T:0.21
Consensus pattern (25 bp):
AGAGTTTAACTGGGAAAAGAAAGAT
Found at i:53710266 original size:22 final size:22
Alignment explanation
Indices: 53710236--53710287 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
53710226 GGTCTTTAGT
*
53710236 CGTCCTGTCTACGGTGTTGAGC
1 CGTCCTGTCTACGGCGTTGAGC
*
53710258 CGTCTTGTCTACGGCGTTGAGC
1 CGTCCTGTCTACGGCGTTGAGC
53710280 CGTCCTGT
1 CGTCCTGT
53710288 TGACTTAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.08, C:0.29, G:0.31, T:0.33
Consensus pattern (22 bp):
CGTCCTGTCTACGGCGTTGAGC
Found at i:53721179 original size:20 final size:20
Alignment explanation
Indices: 53721154--53721192 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
53721144 TTTACGGTAC
53721154 ATGAAAGAATTACTTAAAAT
1 ATGAAAGAATTACTTAAAAT
**
53721174 ATGAAATTATTACTTAAAA
1 ATGAAAGAATTACTTAAAA
53721193 CATAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (20 bp):
ATGAAAGAATTACTTAAAAT
Found at i:53721204 original size:20 final size:20
Alignment explanation
Indices: 53721162--53721204 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
53721152 ACATGAAAGA
* * *
53721162 ATTACTTAAAATATGAAATT
1 ATTACTTAAAACATAAAAAT
53721182 ATTACTTAAAACATAAAAAT
1 ATTACTTAAAACATAAAAAT
53721202 ATT
1 ATT
53721205 TTTAAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.37
Consensus pattern (20 bp):
ATTACTTAAAACATAAAAAT
Found at i:53721316 original size:110 final size:110
Alignment explanation
Indices: 53721092--53721340 Score: 281
Period size: 110 Copynumber: 2.3 Consensus size: 110
53721082 CAATAATTTT
* * * * * *
53721092 TTTTTAAAAAACTAAGTAATTCATAAAACATGAAAGAGTTCTAAAAATTTAGTTTACGGTACATG
1 TTTTTAAAAAATTAAGTAATTCGTAAAACATGAAAAAATTCTAAAAA-TTAATTTACAGTACATG
*
53721157 AAAGAATTACTTAAAATATGAAATTATTACTTAAAACATAAAAATA
65 AAAGAATTACTTAAAATATGAAATTATTACTTAAAACATAAAAAGA
* *
53721203 TTTTTAAAATATTAAGTAATTCGTAAAACAT-AAAAAATTCTAGGAAAA-TAATTTATAGTACAT
1 TTTTTAAAAAATTAAGTAATTCGTAAAACATGAAAAAATTCTA--AAAATTAATTTACAGTACAT
* * * *
53721266 GAAAGAATTACTTAAAATATGAAA-TAGTTATTTCAAACGTGAAAAGA
64 GAAAGAATTACTTAAAATATGAAATTA-TTACTTAAAACATAAAAAGA
* * *
53721313 TTTTGAAGAGATTACA-TAATTCGTAAAA
1 TTTTTAAAAAATTA-AGTAATTCGTAAAA
53721341 ATATGAAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
109 2 0.02
110 83 0.70
111 29 0.25
112 4 0.03
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.33
Consensus pattern (110 bp):
TTTTTAAAAAATTAAGTAATTCGTAAAACATGAAAAAATTCTAAAAATTAATTTACAGTACATGA
AAGAATTACTTAAAATATGAAATTATTACTTAAAACATAAAAAGA
Found at i:53721684 original size:60 final size:59
Alignment explanation
Indices: 53721591--53721708 Score: 200
Period size: 60 Copynumber: 2.0 Consensus size: 59
53721581 AACAAATAAT
* *
53721591 AAATGAATAATGTTAGACAATATTTGTTAATTTTGAAGGGTTTTAATATTCCTTCTTTTC
1 AAATGAATAAGGTTAGACAATATTTGTTAATTTTGAAAGGTTTTAATATTCCTT-TTTTC
*
53721651 AAATGAATAAGGTTATACAATATTTGTTAATTTTGAAAGGTTTTAATATTCCTTTTTT
1 AAATGAATAAGGTTAGACAATATTTGTTAATTTTGAAAGGTTTTAATATTCCTTTTTT
53721709 ATCAGTTGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (59 bp):
AAATGAATAAGGTTAGACAATATTTGTTAATTTTGAAAGGTTTTAATATTCCTTTTTTC
Found at i:53721985 original size:32 final size:32
Alignment explanation
Indices: 53721947--53722014 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
53721937 CAAAGTATAA
53721947 TTTTAAGGCCATTAACCCATGATATCTCCTTT
1 TTTTAAGGCCATTAACCCATGATATCTCCTTT
*
53721979 TTTTAAGGCCATTAACCCATTATATCTCCTTT
1 TTTTAAGGCCATTAACCCATGATATCTCCTTT
53722011 TTTT
1 TTTT
53722015 CTTCTTGATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.46
Consensus pattern (32 bp):
TTTTAAGGCCATTAACCCATGATATCTCCTTT
Found at i:53726926 original size:8 final size:8
Alignment explanation
Indices: 53726915--53726942 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
53726905 AGAAATTAAT
53726915 ATAATATA
1 ATAATATA
53726923 ATAATATA
1 ATAATATA
53726931 ATAATATA
1 ATAATATA
53726939 ATAA
1 ATAA
53726943 AACATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATAATATA
Found at i:53727004 original size:4 final size:4
Alignment explanation
Indices: 53726995--53727025 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
53726985 GTGGAACGAA
*
53726995 AAAG AAAG AAAG AAAG AAAG AAGG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
53727026 AAGAAAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:53741543 original size:42 final size:43
Alignment explanation
Indices: 53741436--53741579 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 43
53741426 TAGAAATTCG
* * * *
53741436 AGCTCGTTGAGCGATCCGAGTTCGTGATATATGTGAGAATCCTA
1 AGCTCGTTGAGAGGTCCAAGTTCGTGATATATGTGAGCATCC-A
* *
53741480 A-CTTGTTGAGTGGTCCAAGTTCGTGATATATGTG-GCATCCA
1 AGCTCGTTGAGAGGTCCAAGTTCGTGATATATGTGAGCATCCA
* * ** **
53741521 AGCTCGTTGAGAGGTCCAAGTTCATTATGGATGTGAGCATCTG
1 AGCTCGTTGAGAGGTCCAAGTTCGTGATATATGTGAGCATCCA
*
53741564 AGCTCATTGAGAGGTC
1 AGCTCGTTGAGAGGTC
53741580 TGAGTTCATG
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 32 0.38
43 49 0.58
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
AGCTCGTTGAGAGGTCCAAGTTCGTGATATATGTGAGCATCCA
Found at i:53741575 original size:43 final size:42
Alignment explanation
Indices: 53741485--53741596 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
53741475 TCCTAACTTG
* * * *
53741485 TTGAGTGGTCCAAGTTCGTGATATATGTGGCATCCAAGCTCG
1 TTGAGAGGTCCAAGTTCATGATAGATGTGGCATCCAAGCTCA
* * **
53741527 TTGAGAGGTCCAAGTTCATTATGGATGTGAGCATCTGAGCTCA
1 TTGAGAGGTCCAAGTTCATGATAGATGTG-GCATCCAAGCTCA
**
53741570 TTGAGAGGTCTGAGTTCATGATAGATG
1 TTGAGAGGTCCAAGTTCATGATAGATG
53741597 CGATTCATGT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (42 bp):
TTGAGAGGTCCAAGTTCATGATAGATGTGGCATCCAAGCTCA
Found at i:53749040 original size:48 final size:47
Alignment explanation
Indices: 53748967--53749285 Score: 311
Period size: 48 Copynumber: 6.6 Consensus size: 47
53748957 ATGTGTGCTG
53748967 GTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCCACATTATGAGAGCCA
* * * ** * * *
53749015 ATGTAAGACCATGTCTGGGATATGGCATCGGC-GTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGCCACAT--TATGAGAGCCA
*
53749063 GTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCG-CCACATTATGAGAGCCA
* * *
53749111 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCCACATTATGAGAGCCA
* * * * * * * *
53749159 ATGTAGGACCATGTTTGGAACATGGCATCG--AAATTATCATATGTGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGCCACATTAT--GA-GAGCCA
*
53749207 GTGTAAGACCATGTCTGGGACATGGCATCGACACTGATGTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGCCAC--AT-TATGAGAGCCA
* *
53749257 GTGTAAGACCATGTTTGGCACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
53749286 AGCATTTTAC
Statistics
Matches: 217, Mismatches: 41, Indels: 24
0.77 0.15 0.09
Matches are distributed among these distances:
45 4 0.02
46 1 0.00
47 3 0.01
48 168 0.77
49 2 0.01
50 33 0.15
51 1 0.00
52 2 0.01
53 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGCCACATTATGAGAGCCA
Found at i:53749116 original size:96 final size:96
Alignment explanation
Indices: 53748951--53749285 Score: 379
Period size: 96 Copynumber: 3.5 Consensus size: 96
53748941 AAGACATTTG
* ** *
53748951 GTTGATATGTGTGCTGGTGTAAGACCATGTCTGGGACATGGCATC-AGCCACATTATGAGAGCCA
1 GTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCATATTATGAGAGCCA
* *
53749015 ATGTAAGACCATGTCTGGGATATGGCATCGGC
65 GTGTAAGACCATGTCTGGGACATGGCATCGGC
* *
53749047 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGAGCCAG
1 GTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGAGCCAG
53749112 TGTAAGACCATGTCTGGGACATGGCATCGGC
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
* ** * * * * * * * *
53749143 CTCAATATGTGAGCCAATGTAGGACCATGTTTGGAACATGGCATCGA-AATTATCAT-ATGTGTC
1 GTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TATTATGA-GAGCC
*
53749206 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
64 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
** * * *
53749239 ACTGATGTATGAGAGCCAGTGTAAGACCATGTTTGGCACATGGCATC
1 GTTGA--TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
53749286 AGCATTTTAC
Statistics
Matches: 208, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
95 2 0.01
96 169 0.81
97 1 0.00
98 36 0.17
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
GTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCATATTATGAGAGCCAG
TGTAAGACCATGTCTGGGACATGGCATCGGC
Found at i:53749227 original size:144 final size:146
Alignment explanation
Indices: 53748967--53749288 Score: 456
Period size: 144 Copynumber: 2.2 Consensus size: 146
53748957 ATGTGTGCTG
*
53748967 GTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAATGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGAGCCAATGTAAGACCATGTCTG
* * ** *
53749032 GGATATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-C
66 GAACATGGCATCGAAGTTCATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAC
53749096 AT-AT-TATGAGAGCCA
131 -TGATGTATGAGAGCCA
* * * * *
53749111 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAATGTAGGACCATGTTTG
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGAGCCAATGTAAGACCATGTCTG
*
53749176 GAACATGGCATCGAAATTATCATATGTGT-C-AGTGTAAGACCATGTCTGGGACATGGCATCGAC
66 GAACATGGCATCG-AAGT-TCATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
53749239 ACTGATGTATGAGAGCCA
129 ACTGATGTATGAGAGCCA
* *
53749257 GTGTAAGACCATGTTTGGCACATGGCATCAGC
1 GTGTAAGACCATGTCTGGGACATGGCATCAGC
53749289 ATTTTACCCT
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
144 104 0.66
145 5 0.03
146 49 0.31
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (146 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCCACAATATGAGAGCCAATGTAAGACCATGTCTG
GAACATGGCATCGAAGTTCATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAC
TGATGTATGAGAGCCA
Found at i:53760659 original size:132 final size:131
Alignment explanation
Indices: 53760439--53760787 Score: 409
Period size: 132 Copynumber: 2.6 Consensus size: 131
53760429 TTATTGAACG
* * * * ***
53760439 AACGGGAAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAAGATCGAGTATTAC
1 AACGGGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGA-AACCGC
* *
53760503 CTTCG-TTTAAAAGATTTTTTAGAAGTCATGAACGAAATTCTAAAGGGACATTCGAT-TACTTTG
65 CTTCGTTTTAAAGGA-TTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCT-CTTTG
53760566 AGCA
128 AGCA
* * *
53760570 AACGAGAAATTGCAACCCAGCACGTTAGGGCATGATTCCGCGAATTGTCAAATATCGAACACCGC
1 AACGGGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAA-ACCGC
* * * * *
53760635 CTTCGTTTTAAAGGATTTTTAGAAGACATGTACGAAATTTTGAAGGGATATTCGATCTTTTTGAG
65 CTTCGTTTTAAAGGATTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCTCTTTGAG
53760700 CA
130 CA
* * *
53760702 AGCGGGAAATTGCAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATC-AAATCTCG
1 AACGGGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAAA-C-CG
* * *
53760766 TCTTCATTTTAAAGAATTTTTA
64 CCTTCGTTTTAAAGGATTTTTA
53760788 AATGAATAAT
Statistics
Matches: 186, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
130 1 0.01
131 38 0.20
132 138 0.74
133 9 0.05
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (131 bp):
AACGGGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAAACCGCC
TTCGTTTTAAAGGATTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCTCTTTGAGC
A
Found at i:53764726 original size:8 final size:8
Alignment explanation
Indices: 53764709--53764767 Score: 82
Period size: 8 Copynumber: 7.4 Consensus size: 8
53764699 GTATATCGGC
53764709 AAAAGCCG
1 AAAAGCCG
*
53764717 AAATGCCG
1 AAAAGCCG
*
53764725 AAAAGTCG
1 AAAAGCCG
*
53764733 AAAAGCCA
1 AAAAGCCG
53764741 AAAAGCCG
1 AAAAGCCG
*
53764749 AAATGCCG
1 AAAAGCCG
53764757 AAAAGCCG
1 AAAAGCCG
53764765 AAA
1 AAA
53764768 GTTTGGCTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:53764734 original size:16 final size:16
Alignment explanation
Indices: 53764709--53764767 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
53764699 GTATATCGGC
53764709 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* * *
53764725 AAAAGTCGAAAAGCCA
1 AAAAGCCGAAATGCCG
53764741 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
53764757 AAAAGCCGAAA
1 AAAAGCCGAAA
53764768 GTTTGGCTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:53765053 original size:29 final size:29
Alignment explanation
Indices: 53764983--53765056 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
53764973 GCATGAATAT
* * * *
53764983 AATGTGATTTGGACCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAAAGGCCCACACA
*
53765012 AATGTGATTTGGGCCTAAAGGCCCATACA
1 AATGTGATTTGGGCCTAAAGGCCCACACA
53765041 AATGTGATTTGGGCCT
1 AATGTGATTTGGGCCT
53765057 CATAGGCCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAAAGGCCCACACA
Found at i:53765066 original size:29 final size:28
Alignment explanation
Indices: 53764983--53765067 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
53764973 GCATGAATAT
* * * *
53764983 AATGTGATTTGGACCTAATGGGCCACATA
1 AATGTGATTTGGGCCT-ATAGGCCATACA
*
53765012 AATGTGATTTGGGCCTAAAGGCCCATACA
1 AATGTGATTTGGGCCTATAGG-CCATACA
53765041 AATGTGATTTGGGCCTCATAGGCCATA
1 AATGTGATTTGGGCCT-ATAGGCCATA
53765068 TGAAAGAGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.06
29 41 0.85
30 4 0.08
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (28 bp):
AATGTGATTTGGGCCTATAGGCCATACA
Found at i:53774717 original size:31 final size:31
Alignment explanation
Indices: 53774682--53774755 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
53774672 CTACTATCTT
* *
53774682 AGCAGACTATCTATTTTATGTTAATTGTCCC
1 AGCAGACTATCTATTATATGTTAACTGTCCC
* * * *
53774713 AGCAGACTATTTGTTATGTGTTTACTGTCCC
1 AGCAGACTATCTATTATATGTTAACTGTCCC
53774744 AGCAGACTATCT
1 AGCAGACTATCT
53774756 CTGTAGGTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (31 bp):
AGCAGACTATCTATTATATGTTAACTGTCCC
Found at i:53822614 original size:56 final size:56
Alignment explanation
Indices: 53822547--53822778 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
53822537 TATTAGTTTA
* *
53822547 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
53822603 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
53822659 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
53822715 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
53822771 TTGCCCAT
1 TTGCCCAT
53822779 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:53825214 original size:47 final size:45
Alignment explanation
Indices: 53825145--53825498 Score: 239
Period size: 47 Copynumber: 7.6 Consensus size: 45
53825135 GATTCATGCA
* * *
53825145 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACA-GATGAGAG
* * *
53825191 CCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCCAAACGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGAG
* * * * * * *
53825239 CTAGTGTAAGTCATGTTTGGGACATGCATCAGCCATACTATGATAA
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACA-GATGAGAG
* * * **
53825285 CCAGTGTAAGACCATGTCTGGGACACGGCATCGGCACAGAGATGAGTT
1 CCAGTGTAAGA-CATGTCTGGGACA-TGCATCAGC-CACAGATGAGAG
* ** *
53825333 CCAGAGTAAGACATGTCTGGGACATGCATGGGCCTCGACAGA-GATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG-C-C-ACAGATGAGAG
* * ** * * *
53825380 CTAGTGTAAGACGTGTCTGGGACACACATCAGCTA-AGA-GCTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATG-AGAG
* * *
53825424 CTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGC-CAC--AGATGAGAG
53825472 CCAGTGTAAGACCATGTCTGGGACATG
1 CCAGTGTAAGA-CATGTCTGGGACATG
53825499 GTATCAGCAA
Statistics
Matches: 238, Mismatches: 52, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.02
44 32 0.13
45 1 0.00
46 37 0.16
47 85 0.36
48 58 0.24
49 21 0.09
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAG
Found at i:53825308 original size:94 final size:92
Alignment explanation
Indices: 53825147--53825507 Score: 319
Period size: 94 Copynumber: 3.9 Consensus size: 92
53825137 TTCATGCACC
* * * *
53825147 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
53825212 GACATGGCATCAGCATCCAAACGAGGGCT
66 GACATGGCATCAGCAT-CAAA-GAGGGCT
* * * *
53825241 AGTGTAAGTCATGTTTGGGACATGCATCAGCCATACTATGATAACCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * ** *
53825306 GACACGGCATCGGCA-CAGAGATGAGTTCC
66 GACATGGCATCAGCATCA-A-A-GAGGGCT
* ** * *
53825335 AGAGTAAGACATGTCTGGGACATGCATGGGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
**
53825396 CTGGGACA-CACATCAGC-T--AAGAGCTGTGCT
62 CTGGGACATGGCATCAGCATCAAAGAG--G-GCT
*
53825426 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
*
53825490 TGGGACATGGTATCAGCA
63 TGGGACATGGCATCAGCA
53825508 ATATATCCCA
Statistics
Matches: 211, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
88 3 0.01
89 1 0.00
90 1 0.00
91 28 0.13
92 14 0.07
93 25 0.12
94 125 0.59
95 14 0.07
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATCAAAGAGGGCT
Found at i:53825410 original size:141 final size:140
Alignment explanation
Indices: 53825144--53825507 Score: 330
Period size: 141 Copynumber: 2.6 Consensus size: 140
53825134 TGATTCATGC
* * ** *
53825144 ACCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 ACCAGTGTAAGACATGTCTGGGACAGGCATCGGCCACAAGATGAGAGCCAGAGTAAGACCATGTC
* * * **
53825209 TGGGACATGGCATCAGCATCCAAACGAGGGCTAGTGTAAGTCATGTTTGGGACATGCATCAGCCA
66 TGGGACATGGCATCAGCATCCAAACGAGAGCTAGTGTAAGACATGTCTGGGACACACATCAGCCA
53825274 TACTATGATA
131 TACTATGATA
**
53825284 ACCAGTGTAAGACCATGTCTGGGACACGGCATCGG-CACAGAGATGAGTTCCAGAGTAAGA-CAT
1 ACCAGTGTAAGA-CATGTCTGGGACA-GGCATCGGCCACA-AGATGAGAGCCAGAGTAAGACCAT
** * * * *
53825347 GTCTGGGACAT-GCATGGGCCTCGACAGA-GATAGCTAGTGTAAGACGTGTCTGGGACACACATC
63 GTCTGGGACATGGCATCAGCATC--CAAACGAGAGCTAGTGTAAGACATGTCTGGGACACACATC
**
53825410 AG-C-TAAGAGCTG-T-
126 AGCCATACTA--TGATA
* * * * * * * *
53825423 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATG
1 ACCAGTGTAAGACATGTCTGGGACAGGCATCGGC-CAC-AAGATGAGAGCCAGAGTAAGACCATG
*
53825488 TCTGGGACATGGTATCAGCA
64 TCTGGGACATGGCATCAGCA
53825508 ATATATCCCA
Statistics
Matches: 178, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
137 6 0.03
138 13 0.07
139 31 0.17
140 36 0.20
141 68 0.38
142 24 0.13
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (140 bp):
ACCAGTGTAAGACATGTCTGGGACAGGCATCGGCCACAAGATGAGAGCCAGAGTAAGACCATGTC
TGGGACATGGCATCAGCATCCAAACGAGAGCTAGTGTAAGACATGTCTGGGACACACATCAGCCA
TACTATGATA
Found at i:53838953 original size:134 final size:134
Alignment explanation
Indices: 53838713--53838980 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
53838703 CTTCACTTGT
53838713 TATTTGACTTTGAATCGGACGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAATTAAATT
1 TATTTGACTTTGAATCGGACGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAATTAAATT
53838778 ATTATCTCTCTCGAGACTAACAACGTCTAACCCTAGTTTGAATAATTGAAATCTCTTTCTAAATA
66 ATTATCTCTCTCGAGACTAACAACGTCTAACCCTAGTTTGAATAATTGAAATCTCTTTCTAAATA
53838843 ACCC
131 ACCC
53838847 TATTTGACTTTGAATCGGACGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAATTAAATT
1 TATTTGACTTTGAATCGGACGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAATTAAATT
53838912 ATTATCTCTCTCGAGACTAACAACGTCTAACCCTAGTTTGAATAATTGAAATCTCTTTCTAAATA
66 ATTATCTCTCTCGAGACTAACAACGTCTAACCCTAGTTTGAATAATTGAAATCTCTTTCTAAATA
53838977 ACCC
131 ACCC
53838981 CTCAGGGTTG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (134 bp):
TATTTGACTTTGAATCGGACGATTTATTCATTCAACTTGTTCCGTAGAGATCCCTAAATTAAATT
ATTATCTCTCTCGAGACTAACAACGTCTAACCCTAGTTTGAATAATTGAAATCTCTTTCTAAATA
ACCC
Found at i:53840923 original size:46 final size:46
Alignment explanation
Indices: 53840873--53841091 Score: 393
Period size: 46 Copynumber: 4.8 Consensus size: 46
53840863 TTTGGGCATT
53840873 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
53840919 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
53840965 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
53841011 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
53841057 CGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
53841092 GCGGGTTACA
Statistics
Matches: 168, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 168 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:53844221 original size:15 final size:15
Alignment explanation
Indices: 53844182--53844261 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
53844172 GTATCTTGGG
*
53844182 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
53844197 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
53844212 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
53844227 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
53844242 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
53844256 TTTCTT
1 TTTCTT
53844262 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:53844251 original size:30 final size:30
Alignment explanation
Indices: 53844173--53844260 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
53844163 CATAGTATCG
* * *
53844173 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
53844203 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
53844233 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
53844261 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:53851003 original size:33 final size:34
Alignment explanation
Indices: 53850965--53851035 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
53850955 CATCCCTCCT
*
53850965 AACAC-ACTAAAGCGAACAT-GTGCCAAGCCACCA
1 AACACAACT-AAGCGAACATAGTGCCAAACCACCA
* * *
53850998 AACACAACTAAGGGCACATATTGCCAAACCACCA
1 AACACAACTAAGCGAACATAGTGCCAAACCACCA
53851032 AACA
1 AACA
53851036 TAACAAAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 13 0.41
34 19 0.59
ACGTcount: A:0.45, C:0.32, G:0.13, T:0.10
Consensus pattern (34 bp):
AACACAACTAAGCGAACATAGTGCCAAACCACCA
Found at i:53852760 original size:49 final size:48
Alignment explanation
Indices: 53852703--53853020 Score: 201
Period size: 49 Copynumber: 6.6 Consensus size: 48
53852693 TATGTGTGTC
* *
53852703 AGTGTAAGACCTGTTTGGGACACGGCATCGACACAGATAAGTGAGAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGACTCAGATAAGTGA-AGCT
* * * * * *
53852752 AGTGTAAGACCTGTCTGGGACATGGCATTAGCCTCAAGACACG-CAAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCA-TCGACTC-AGATAAGTGAAGCT
* * * *
53852801 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGAGAT--GT---GTT
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-TCAGATAAGTGAAGCT
* * * * *
53852845 AGTGTAAGACTTATTTGGGACATGGCATCGGCAT-AGATAAATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCGAC-TCAGATAAGTGA-AGCT
* * * *
53852894 AGTATGAGACCTGTTTGGGACATGGCATCAGCCTCA-ATGTA-TGTAAG-T
1 AGTGTAAGACCTGTTTGGGACATGGCATC-GACTCAGAT-AAGTG-AAGCT
* * * * *
53852942 CAGTTTAAGACTTGTCTGGGACTTGGCATCGACTTAGAT--GTGAGAGCT
1 -AGTGTAAGACCTGTTTGGGACATGGCATCGACTCAGATAAGTGA-AGCT
*
53852990 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTTTGGGACATGGCATCG
53853021 GCATCGTACC
Statistics
Matches: 210, Mismatches: 39, Indels: 41
0.72 0.13 0.14
Matches are distributed among these distances:
43 4 0.02
44 32 0.15
45 1 0.00
46 2 0.01
47 13 0.06
48 27 0.13
49 116 0.55
50 10 0.05
51 5 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCGACTCAGATAAGTGAAGCT
Found at i:53852958 original size:142 final size:141
Alignment explanation
Indices: 53852697--53853024 Score: 372
Period size: 142 Copynumber: 2.3 Consensus size: 141
53852687 GGGTGATATG
* * * * * * * *
53852697 TGTGTCAGTGTAAGACCTGTTTGGGACACGGCATCGACACAGATAAGTGAGAGCTAGTGTAAGAC
1 TGTGTTAGTGTAAGACATGTTTGGGACATGGCATCGGCATAGATAAATGAGAGCCAGTATAAGAC
*
53852762 CTGTCTGGGACATGGCATTAGCCTCAAGACACGCAAGCTAGTGTAAGACCTGTCTGGGACATGGC
66 CTGTCTGGGACATGGCATCAGCCTCAAGACACGCAAGCTAGTGTAAGACCTGTCTGGGACATGGC
*
53852827 ATCGGCTTGAGA
131 ATCGACTT-AGA
* * *
53852839 TGTGTTAGTGTAAGACTTATTTGGGACATGGCATCGGCATAGATAAATGAGAGCCAGTATGAGAC
1 TGTGTTAGTGTAAGACATGTTTGGGACATGGCATCGGCATAGATAAATGAGAGCCAGTATAAGAC
* * * * * * *
53852904 CTGTTTGGGACATGGCATCAGCCTCAATG-TATGTAAG-TCAGTTTAAGACTTGTCTGGGACTTG
66 CTGTCTGGGACATGGCATCAGCCTCAA-GACACGCAAGCT-AGTGTAAGACCTGTCTGGGACATG
53852967 GCATCGACTTAGA
129 GCATCGACTTAGA
* *
53852980 TGTGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
1 TGT----GTTAGTGTAAGA-CATGTTTGGGACATGGCATCGGCAT
53853025 CGTACCCTAT
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
141 7 0.04
142 115 0.74
143 1 0.01
145 11 0.07
146 22 0.14
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (141 bp):
TGTGTTAGTGTAAGACATGTTTGGGACATGGCATCGGCATAGATAAATGAGAGCCAGTATAAGAC
CTGTCTGGGACATGGCATCAGCCTCAAGACACGCAAGCTAGTGTAAGACCTGTCTGGGACATGGC
ATCGACTTAGA
Found at i:53853620 original size:16 final size:16
Alignment explanation
Indices: 53853599--53853632 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
53853589 GATGCTTCCC
53853599 TGAATGAACAAATGTA
1 TGAATGAACAAATGTA
* *
53853615 TGAATGATCAAGTGTA
1 TGAATGAACAAATGTA
53853631 TG
1 TG
53853633 TTCGATTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (16 bp):
TGAATGAACAAATGTA
Found at i:53858586 original size:27 final size:28
Alignment explanation
Indices: 53858528--53858590 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
53858518 GAACAAATCC
*
53858528 ATCATTTTACCTTATCAGGGTATTATAG
1 ATCATTTTACCTTATAAGGGTATTATAG
* *
53858556 -TCATTTTACCTTATAAGGGT-TTTTCG
1 ATCATTTTACCTTATAAGGGTATTATAG
53858582 ATCATTTTA
1 ATCATTTTA
53858591 TTACATAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.48
Consensus pattern (28 bp):
ATCATTTTACCTTATAAGGGTATTATAG
Found at i:53860196 original size:10 final size:10
Alignment explanation
Indices: 53860181--53860206 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
53860171 TGGCTAGGAA
53860181 CAAACTTATT
1 CAAACTTATT
53860191 CAAACTTATT
1 CAAACTTATT
53860201 CAAACT
1 CAAACT
53860207 CTTGGTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (10 bp):
CAAACTTATT
Found at i:53864756 original size:16 final size:16
Alignment explanation
Indices: 53864737--53864775 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
53864727 AGTGTAATGC
53864737 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
53864753 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
53864769 TCCAAAA
1 CCCAAAA
53864776 CTTTCTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.51, C:0.36, G:0.05, T:0.08
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:53866008 original size:16 final size:16
Alignment explanation
Indices: 53865983--53866027 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
53865973 ATGAATCGGT
* *
53865983 AAAAGTTGAAAAGCCG
1 AAAAGCTGAAAAGCCA
*
53865999 AAAAGCTGAAATGCCA
1 AAAAGCTGAAAAGCCA
*
53866015 AAAAGCCGAAAAG
1 AAAAGCTGAAAAG
53866028 TTGAAATGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.16, G:0.22, T:0.09
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCA
Found at i:53866022 original size:24 final size:24
Alignment explanation
Indices: 53865991--53866043 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
53865981 GTAAAAGTTG
53865991 AAAAGCCGAAAAGCTGAAATGCCA
1 AAAAGCCGAAAAGCTGAAATGCCA
* *
53866015 AAAAGCCGAAAAGTTGAAATGTCA
1 AAAAGCCGAAAAGCTGAAATGCCA
53866039 AAAAG
1 AAAAG
53866044 TAAAAAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.15, G:0.21, T:0.11
Consensus pattern (24 bp):
AAAAGCCGAAAAGCTGAAATGCCA
Found at i:53866318 original size:29 final size:29
Alignment explanation
Indices: 53866276--53866347 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
53866266 ATATGATTTA
* *
53866276 GGCCTAATGGGCCATATGAAGGTGAATTG
1 GGCCTAATGGGCCATAAGAAGATGAATTG
* *
53866305 GGCCTAGTGGGCCATAAGAATATGAATTG
1 GGCCTAATGGGCCATAAGAAGATGAATTG
**
53866334 GGCGAAATGGGCCA
1 GGCCTAATGGGCCA
53866348 GTTGAACAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.21
Consensus pattern (29 bp):
GGCCTAATGGGCCATAAGAAGATGAATTG
Found at i:53873387 original size:16 final size:16
Alignment explanation
Indices: 53873366--53873402 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
53873356 ATGAATCGGC
*
53873366 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATGCCG
*
53873382 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
53873398 AAAAG
1 AAAAG
53873403 TCAAAAGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:53873537 original size:19 final size:19
Alignment explanation
Indices: 53873505--53873551 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
53873495 ACTTGGGTTG
* *
53873505 AGAATTGGCCAAATGGGCC
1 AGAATGGGCTAAATGGGCC
53873524 AGAATGGGCTAAATGGGCC
1 AGAATGGGCTAAATGGGCC
*
53873543 TG-ATGGGCT
1 AGAATGGGCT
53873552 GTTGTGCCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.19
Consensus pattern (19 bp):
AGAATGGGCTAAATGGGCC
Found at i:53873689 original size:29 final size:29
Alignment explanation
Indices: 53873624--53873732 Score: 96
Period size: 29 Copynumber: 3.8 Consensus size: 29
53873614 GCATGAGTAT
* * *
53873624 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
** *
53873653 AAGGTGAATTAGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAGTGGGCCATAAG
* **
53873682 AATATGAACTGGGCC-AGATGGGCCATTTG
1 AATATGAATTGGGCCTAG-TGGGCCATAAG
* *
53873711 AACAAG-ATTGGGCCTAGTGGGC
1 AATATGAATTGGGCCTAGTGGGC
53873733 TATATGCATG
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
28 14 0.22
29 49 0.78
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
AATATGAATTGGGCCTAGTGGGCCATAAG
Found at i:53877208 original size:30 final size:30
Alignment explanation
Indices: 53877174--53877517 Score: 336
Period size: 30 Copynumber: 11.5 Consensus size: 30
53877164 TCATTGGCTA
* *
53877174 ATGAAAAGGGATGG-TGACGACCATCGAATT
1 ATGAAAAGGGATGGCT-TCGACTATCGAATT
* *
53877204 ATGAAAAGGGATGGCTTCGGCTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * *
53877234 ATGAAAATGGATGGCTTTGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
*
53877264 ATGAAAAGGGATGGCTTCAACTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* *
53877294 ATGAAAAGGGATGGCTTCGGCTATTGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * ** *
53877324 ATGAAAATGGATGTCTTTGGTTATCCAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * *
53877354 ATGAAAAGGCATGGCTTTGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
*
53877384 ATGGAAAGGGATGGCTTCGACTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * *
53877414 ATGTAAAGAGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAATT
* * * *
53877444 ATGGAAAGGGATGG-TGAT-GACCATCAAAAT
1 ATGAAAAGGGATGGCT--TCGACTATCGAATT
* * *
53877474 ATGGAAAGGGATAGCTTC-ATCTATCGAACT
1 ATGAAAAGGGATGGCTTCGA-CTATCGAATT
*
53877504 ACGAAAAGGGATGG
1 ATGAAAAGGGATGG
53877518 TAACAACCAT
Statistics
Matches: 262, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
29 3 0.01
30 256 0.98
31 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCGAATT
Found at i:53884729 original size:18 final size:18
Alignment explanation
Indices: 53884708--53884751 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
53884698 ATTCTGGTGA
53884708 TTCTAATAAAAGCAACAG
1 TTCTAATAAAAGCAACAG
**
53884726 TTCTGAAT-TGAGCAACAG
1 TTCT-AATAAAAGCAACAG
53884744 TTCTAATA
1 TTCTAATA
53884752 GAATCCCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (18 bp):
TTCTAATAAAAGCAACAG
Found at i:53886955 original size:292 final size:292
Alignment explanation
Indices: 53886431--53886979 Score: 1098
Period size: 292 Copynumber: 1.9 Consensus size: 292
53886421 CAGTCTGCTG
53886431 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
1 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
53886496 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
66 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
53886561 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
131 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
53886626 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
196 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
53886691 CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
261 CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
53886723 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
1 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
53886788 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
66 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
53886853 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
131 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
53886918 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGT
196 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGT
53886980 TCGAACCGCT
Statistics
Matches: 257, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
292 257 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (292 bp):
CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
Found at i:53893641 original size:40 final size:40
Alignment explanation
Indices: 53893597--53893820 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
53893587 AAGTGAATAT
* * * * **
53893597 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
53893637 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
53893677 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
53893717 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
53893757 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
53893796 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
53893821 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:53893695 original size:80 final size:80
Alignment explanation
Indices: 53893558--53893820 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
53893548 TTGAATGCTG
* * * * *
53893558 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
53893620 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
53893638 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
53893703 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
53893718 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
53893782 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
53893797 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
53893821 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:53893772 original size:120 final size:120
Alignment explanation
Indices: 53893558--53893820 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
53893548 TTGAATGCTG
* * *
53893558 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
53893622 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
53893678 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
53893740 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
53893797 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
53893821 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:53895266 original size:28 final size:26
Alignment explanation
Indices: 53895225--53895312 Score: 131
Period size: 28 Copynumber: 3.3 Consensus size: 26
53895215 TGGAAGAAGC
53895225 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
53895252 GTTTCTGGTGGCTATGCCACGAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
53895280 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
53895306 GTTCTGG
1 GTTCTGG
53895313 CAACCATTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 14 0.25
27 17 0.30
28 26 0.46
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Done.